data_9V3A # _entry.id 9V3A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.413 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9V3A pdb_00009v3a 10.2210/pdb9v3a/pdb WWPDB D_1300059162 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-05-27 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9V3A _pdbx_database_status.recvd_initial_deposition_date 2025-05-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email caolongxing@westlake.edu.cn _pdbx_contact_author.name_first Longxing _pdbx_contact_author.name_last Cao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4002-3648 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Y.' 1 0009-0005-1995-1476 'Liu, J.' 2 0009-0001-4884-3985 'Cao, L.' 3 0000-0003-4002-3648 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'De novo design of ligand binder and sensor usign a physically generative approach' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.' 1 0009-0005-1995-1476 primary 'Cao, L.' 2 0000-0003-4002-3648 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Crystal structure of de novo designed serotonin binder SROb2_26_L7F' 13966.005 1 ? ? ? ? 2 non-polymer syn SEROTONIN 176.215 1 ? ? ? ? 3 non-polymer nat GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 194 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGDAARKVFEYAEELEKEGVPEEEIQKKFVELAEKLLEEESKETGVPLEEVRKKFVAELIALTIEKYGLEYAVKIADKI KNGSKHPLLQEFAEKVYEIEKEVKGKENPEKLALELAKKLAEA ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGDAARKVFEYAEELEKEGVPEEEIQKKFVELAEKLLEEESKETGVPLEEVRKKFVAELIALTIEKYGLEYAVKIADKI KNGSKHPLLQEFAEKVYEIEKEVKGKENPEKLALELAKKLAEA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SEROTONIN SRO 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 ASP n 1 5 ALA n 1 6 ALA n 1 7 ARG n 1 8 LYS n 1 9 VAL n 1 10 PHE n 1 11 GLU n 1 12 TYR n 1 13 ALA n 1 14 GLU n 1 15 GLU n 1 16 LEU n 1 17 GLU n 1 18 LYS n 1 19 GLU n 1 20 GLY n 1 21 VAL n 1 22 PRO n 1 23 GLU n 1 24 GLU n 1 25 GLU n 1 26 ILE n 1 27 GLN n 1 28 LYS n 1 29 LYS n 1 30 PHE n 1 31 VAL n 1 32 GLU n 1 33 LEU n 1 34 ALA n 1 35 GLU n 1 36 LYS n 1 37 LEU n 1 38 LEU n 1 39 GLU n 1 40 GLU n 1 41 GLU n 1 42 SER n 1 43 LYS n 1 44 GLU n 1 45 THR n 1 46 GLY n 1 47 VAL n 1 48 PRO n 1 49 LEU n 1 50 GLU n 1 51 GLU n 1 52 VAL n 1 53 ARG n 1 54 LYS n 1 55 LYS n 1 56 PHE n 1 57 VAL n 1 58 ALA n 1 59 GLU n 1 60 LEU n 1 61 ILE n 1 62 ALA n 1 63 LEU n 1 64 THR n 1 65 ILE n 1 66 GLU n 1 67 LYS n 1 68 TYR n 1 69 GLY n 1 70 LEU n 1 71 GLU n 1 72 TYR n 1 73 ALA n 1 74 VAL n 1 75 LYS n 1 76 ILE n 1 77 ALA n 1 78 ASP n 1 79 LYS n 1 80 ILE n 1 81 LYS n 1 82 ASN n 1 83 GLY n 1 84 SER n 1 85 LYS n 1 86 HIS n 1 87 PRO n 1 88 LEU n 1 89 LEU n 1 90 GLN n 1 91 GLU n 1 92 PHE n 1 93 ALA n 1 94 GLU n 1 95 LYS n 1 96 VAL n 1 97 TYR n 1 98 GLU n 1 99 ILE n 1 100 GLU n 1 101 LYS n 1 102 GLU n 1 103 VAL n 1 104 LYS n 1 105 GLY n 1 106 LYS n 1 107 GLU n 1 108 ASN n 1 109 PRO n 1 110 GLU n 1 111 LYS n 1 112 LEU n 1 113 ALA n 1 114 LEU n 1 115 GLU n 1 116 LEU n 1 117 ALA n 1 118 LYS n 1 119 LYS n 1 120 LEU n 1 121 ALA n 1 122 GLU n 1 123 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 123 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 469008 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SRO non-polymer . SEROTONIN '3-(2-AMINOETHYL)-1H-INDOL-5-OL' 'C10 H12 N2 O' 176.215 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 PRO 2 -1 -1 PRO PRO A . n A 1 3 GLY 3 0 0 GLY GLY A . n A 1 4 ASP 4 1 1 ASP ASP A . n A 1 5 ALA 5 2 2 ALA ALA A . n A 1 6 ALA 6 3 3 ALA ALA A . n A 1 7 ARG 7 4 4 ARG ARG A . n A 1 8 LYS 8 5 5 LYS LYS A . n A 1 9 VAL 9 6 6 VAL VAL A . n A 1 10 PHE 10 7 7 PHE PHE A . n A 1 11 GLU 11 8 8 GLU GLU A . n A 1 12 TYR 12 9 9 TYR TYR A . n A 1 13 ALA 13 10 10 ALA ALA A . n A 1 14 GLU 14 11 11 GLU GLU A . n A 1 15 GLU 15 12 12 GLU GLU A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 LYS 18 15 15 LYS LYS A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 VAL 21 18 18 VAL VAL A . n A 1 22 PRO 22 19 19 PRO PRO A . n A 1 23 GLU 23 20 20 GLU GLU A . n A 1 24 GLU 24 21 21 GLU GLU A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 ILE 26 23 23 ILE ILE A . n A 1 27 GLN 27 24 24 GLN GLN A . n A 1 28 LYS 28 25 25 LYS LYS A . n A 1 29 LYS 29 26 26 LYS LYS A . n A 1 30 PHE 30 27 27 PHE PHE A . n A 1 31 VAL 31 28 28 VAL VAL A . n A 1 32 GLU 32 29 29 GLU GLU A . n A 1 33 LEU 33 30 30 LEU LEU A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 GLU 35 32 32 GLU GLU A . n A 1 36 LYS 36 33 33 LYS LYS A . n A 1 37 LEU 37 34 34 LEU LEU A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 GLU 39 36 36 GLU GLU A . n A 1 40 GLU 40 37 37 GLU GLU A . n A 1 41 GLU 41 38 38 GLU GLU A . n A 1 42 SER 42 39 39 SER SER A . n A 1 43 LYS 43 40 40 LYS LYS A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 THR 45 42 42 THR THR A . n A 1 46 GLY 46 43 43 GLY GLY A . n A 1 47 VAL 47 44 44 VAL VAL A . n A 1 48 PRO 48 45 45 PRO PRO A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 GLU 50 47 47 GLU GLU A . n A 1 51 GLU 51 48 48 GLU GLU A . n A 1 52 VAL 52 49 49 VAL VAL A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 LYS 54 51 51 LYS LYS A . n A 1 55 LYS 55 52 52 LYS LYS A . n A 1 56 PHE 56 53 53 PHE PHE A . n A 1 57 VAL 57 54 54 VAL VAL A . n A 1 58 ALA 58 55 55 ALA ALA A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 ILE 61 58 58 ILE ILE A . n A 1 62 ALA 62 59 59 ALA ALA A . n A 1 63 LEU 63 60 60 LEU LEU A . n A 1 64 THR 64 61 61 THR THR A . n A 1 65 ILE 65 62 62 ILE ILE A . n A 1 66 GLU 66 63 63 GLU GLU A . n A 1 67 LYS 67 64 64 LYS LYS A . n A 1 68 TYR 68 65 65 TYR TYR A . n A 1 69 GLY 69 66 66 GLY GLY A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 GLU 71 68 68 GLU GLU A . n A 1 72 TYR 72 69 69 TYR TYR A . n A 1 73 ALA 73 70 70 ALA ALA A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 LYS 75 72 72 LYS LYS A . n A 1 76 ILE 76 73 73 ILE ILE A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 ASP 78 75 75 ASP ASP A . n A 1 79 LYS 79 76 76 LYS LYS A . n A 1 80 ILE 80 77 77 ILE ILE A . n A 1 81 LYS 81 78 ? ? ? A . n A 1 82 ASN 82 79 ? ? ? A . n A 1 83 GLY 83 80 ? ? ? A . n A 1 84 SER 84 81 81 SER SER A . n A 1 85 LYS 85 82 82 LYS LYS A . n A 1 86 HIS 86 83 83 HIS HIS A . n A 1 87 PRO 87 84 84 PRO PRO A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 LEU 89 86 86 LEU LEU A . n A 1 90 GLN 90 87 87 GLN GLN A . n A 1 91 GLU 91 88 88 GLU GLU A . n A 1 92 PHE 92 89 89 PHE PHE A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 GLU 94 91 91 GLU GLU A . n A 1 95 LYS 95 92 92 LYS LYS A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 TYR 97 94 94 TYR TYR A . n A 1 98 GLU 98 95 95 GLU GLU A . n A 1 99 ILE 99 96 96 ILE ILE A . n A 1 100 GLU 100 97 97 GLU GLU A . n A 1 101 LYS 101 98 98 LYS LYS A . n A 1 102 GLU 102 99 99 GLU GLU A . n A 1 103 VAL 103 100 100 VAL VAL A . n A 1 104 LYS 104 101 101 LYS LYS A . n A 1 105 GLY 105 102 102 GLY GLY A . n A 1 106 LYS 106 103 103 LYS LYS A . n A 1 107 GLU 107 104 104 GLU GLU A . n A 1 108 ASN 108 105 105 ASN ASN A . n A 1 109 PRO 109 106 106 PRO PRO A . n A 1 110 GLU 110 107 107 GLU GLU A . n A 1 111 LYS 111 108 108 LYS LYS A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 ALA 113 110 110 ALA ALA A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 GLU 115 112 112 GLU GLU A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 LYS 118 115 115 LYS LYS A . n A 1 119 LYS 119 116 116 LYS LYS A . n A 1 120 LEU 120 117 117 LEU LEU A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 GLU 122 119 119 GLU GLU A . n A 1 123 ALA 123 120 120 ALA ALA A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id SRO _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id SRO _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SRO 1 201 1 SRO SRO A . C 3 GOL 1 202 2 GOL GOL A . D 3 GOL 1 203 3 GOL GOL A . E 4 HOH 1 301 136 HOH HOH A . E 4 HOH 2 302 123 HOH HOH A . E 4 HOH 3 303 159 HOH HOH A . E 4 HOH 4 304 192 HOH HOH A . E 4 HOH 5 305 164 HOH HOH A . E 4 HOH 6 306 94 HOH HOH A . E 4 HOH 7 307 97 HOH HOH A . E 4 HOH 8 308 102 HOH HOH A . E 4 HOH 9 309 16 HOH HOH A . E 4 HOH 10 310 149 HOH HOH A . E 4 HOH 11 311 36 HOH HOH A . E 4 HOH 12 312 85 HOH HOH A . E 4 HOH 13 313 7 HOH HOH A . E 4 HOH 14 314 54 HOH HOH A . E 4 HOH 15 315 19 HOH HOH A . E 4 HOH 16 316 86 HOH HOH A . E 4 HOH 17 317 39 HOH HOH A . E 4 HOH 18 318 56 HOH HOH A . E 4 HOH 19 319 63 HOH HOH A . E 4 HOH 20 320 142 HOH HOH A . E 4 HOH 21 321 35 HOH HOH A . E 4 HOH 22 322 21 HOH HOH A . E 4 HOH 23 323 122 HOH HOH A . E 4 HOH 24 324 89 HOH HOH A . E 4 HOH 25 325 3 HOH HOH A . E 4 HOH 26 326 99 HOH HOH A . E 4 HOH 27 327 68 HOH HOH A . E 4 HOH 28 328 23 HOH HOH A . E 4 HOH 29 329 118 HOH HOH A . E 4 HOH 30 330 44 HOH HOH A . E 4 HOH 31 331 6 HOH HOH A . E 4 HOH 32 332 64 HOH HOH A . E 4 HOH 33 333 60 HOH HOH A . E 4 HOH 34 334 42 HOH HOH A . E 4 HOH 35 335 24 HOH HOH A . E 4 HOH 36 336 179 HOH HOH A . E 4 HOH 37 337 103 HOH HOH A . E 4 HOH 38 338 14 HOH HOH A . E 4 HOH 39 339 182 HOH HOH A . E 4 HOH 40 340 52 HOH HOH A . E 4 HOH 41 341 88 HOH HOH A . E 4 HOH 42 342 117 HOH HOH A . E 4 HOH 43 343 32 HOH HOH A . E 4 HOH 44 344 77 HOH HOH A . E 4 HOH 45 345 137 HOH HOH A . E 4 HOH 46 346 96 HOH HOH A . E 4 HOH 47 347 8 HOH HOH A . E 4 HOH 48 348 100 HOH HOH A . E 4 HOH 49 349 126 HOH HOH A . E 4 HOH 50 350 10 HOH HOH A . E 4 HOH 51 351 150 HOH HOH A . E 4 HOH 52 352 13 HOH HOH A . E 4 HOH 53 353 48 HOH HOH A . E 4 HOH 54 354 65 HOH HOH A . E 4 HOH 55 355 9 HOH HOH A . E 4 HOH 56 356 57 HOH HOH A . E 4 HOH 57 357 5 HOH HOH A . E 4 HOH 58 358 113 HOH HOH A . E 4 HOH 59 359 109 HOH HOH A . E 4 HOH 60 360 4 HOH HOH A . E 4 HOH 61 361 31 HOH HOH A . E 4 HOH 62 362 59 HOH HOH A . E 4 HOH 63 363 115 HOH HOH A . E 4 HOH 64 364 15 HOH HOH A . E 4 HOH 65 365 87 HOH HOH A . E 4 HOH 66 366 69 HOH HOH A . E 4 HOH 67 367 53 HOH HOH A . E 4 HOH 68 368 45 HOH HOH A . E 4 HOH 69 369 80 HOH HOH A . E 4 HOH 70 370 82 HOH HOH A . E 4 HOH 71 371 11 HOH HOH A . E 4 HOH 72 372 92 HOH HOH A . E 4 HOH 73 373 70 HOH HOH A . E 4 HOH 74 374 66 HOH HOH A . E 4 HOH 75 375 38 HOH HOH A . E 4 HOH 76 376 25 HOH HOH A . E 4 HOH 77 377 33 HOH HOH A . E 4 HOH 78 378 91 HOH HOH A . E 4 HOH 79 379 128 HOH HOH A . E 4 HOH 80 380 131 HOH HOH A . E 4 HOH 81 381 1 HOH HOH A . E 4 HOH 82 382 30 HOH HOH A . E 4 HOH 83 383 135 HOH HOH A . E 4 HOH 84 384 12 HOH HOH A . E 4 HOH 85 385 114 HOH HOH A . E 4 HOH 86 386 40 HOH HOH A . E 4 HOH 87 387 152 HOH HOH A . E 4 HOH 88 388 194 HOH HOH A . E 4 HOH 89 389 62 HOH HOH A . E 4 HOH 90 390 186 HOH HOH A . E 4 HOH 91 391 74 HOH HOH A . E 4 HOH 92 392 17 HOH HOH A . E 4 HOH 93 393 37 HOH HOH A . E 4 HOH 94 394 22 HOH HOH A . E 4 HOH 95 395 174 HOH HOH A . E 4 HOH 96 396 58 HOH HOH A . E 4 HOH 97 397 27 HOH HOH A . E 4 HOH 98 398 2 HOH HOH A . E 4 HOH 99 399 81 HOH HOH A . E 4 HOH 100 400 153 HOH HOH A . E 4 HOH 101 401 120 HOH HOH A . E 4 HOH 102 402 138 HOH HOH A . E 4 HOH 103 403 184 HOH HOH A . E 4 HOH 104 404 61 HOH HOH A . E 4 HOH 105 405 34 HOH HOH A . E 4 HOH 106 406 93 HOH HOH A . E 4 HOH 107 407 75 HOH HOH A . E 4 HOH 108 408 132 HOH HOH A . E 4 HOH 109 409 156 HOH HOH A . E 4 HOH 110 410 71 HOH HOH A . E 4 HOH 111 411 162 HOH HOH A . E 4 HOH 112 412 67 HOH HOH A . E 4 HOH 113 413 72 HOH HOH A . E 4 HOH 114 414 177 HOH HOH A . E 4 HOH 115 415 76 HOH HOH A . E 4 HOH 116 416 181 HOH HOH A . E 4 HOH 117 417 28 HOH HOH A . E 4 HOH 118 418 188 HOH HOH A . E 4 HOH 119 419 183 HOH HOH A . E 4 HOH 120 420 166 HOH HOH A . E 4 HOH 121 421 168 HOH HOH A . E 4 HOH 122 422 187 HOH HOH A . E 4 HOH 123 423 141 HOH HOH A . E 4 HOH 124 424 167 HOH HOH A . E 4 HOH 125 425 127 HOH HOH A . E 4 HOH 126 426 50 HOH HOH A . E 4 HOH 127 427 189 HOH HOH A . E 4 HOH 128 428 84 HOH HOH A . E 4 HOH 129 429 90 HOH HOH A . E 4 HOH 130 430 155 HOH HOH A . E 4 HOH 131 431 178 HOH HOH A . E 4 HOH 132 432 148 HOH HOH A . E 4 HOH 133 433 83 HOH HOH A . E 4 HOH 134 434 79 HOH HOH A . E 4 HOH 135 435 134 HOH HOH A . E 4 HOH 136 436 172 HOH HOH A . E 4 HOH 137 437 111 HOH HOH A . E 4 HOH 138 438 130 HOH HOH A . E 4 HOH 139 439 185 HOH HOH A . E 4 HOH 140 440 146 HOH HOH A . E 4 HOH 141 441 173 HOH HOH A . E 4 HOH 142 442 49 HOH HOH A . E 4 HOH 143 443 26 HOH HOH A . E 4 HOH 144 444 193 HOH HOH A . E 4 HOH 145 445 104 HOH HOH A . E 4 HOH 146 446 151 HOH HOH A . E 4 HOH 147 447 165 HOH HOH A . E 4 HOH 148 448 175 HOH HOH A . E 4 HOH 149 449 163 HOH HOH A . E 4 HOH 150 450 129 HOH HOH A . E 4 HOH 151 451 169 HOH HOH A . E 4 HOH 152 452 144 HOH HOH A . E 4 HOH 153 453 41 HOH HOH A . E 4 HOH 154 454 112 HOH HOH A . E 4 HOH 155 455 47 HOH HOH A . E 4 HOH 156 456 161 HOH HOH A . E 4 HOH 157 457 143 HOH HOH A . E 4 HOH 158 458 110 HOH HOH A . E 4 HOH 159 459 154 HOH HOH A . E 4 HOH 160 460 119 HOH HOH A . E 4 HOH 161 461 107 HOH HOH A . E 4 HOH 162 462 139 HOH HOH A . E 4 HOH 163 463 147 HOH HOH A . E 4 HOH 164 464 51 HOH HOH A . E 4 HOH 165 465 106 HOH HOH A . E 4 HOH 166 466 140 HOH HOH A . E 4 HOH 167 467 108 HOH HOH A . E 4 HOH 168 468 176 HOH HOH A . E 4 HOH 169 469 78 HOH HOH A . E 4 HOH 170 470 73 HOH HOH A . E 4 HOH 171 471 121 HOH HOH A . E 4 HOH 172 472 124 HOH HOH A . E 4 HOH 173 473 95 HOH HOH A . E 4 HOH 174 474 158 HOH HOH A . E 4 HOH 175 475 46 HOH HOH A . E 4 HOH 176 476 105 HOH HOH A . E 4 HOH 177 477 43 HOH HOH A . E 4 HOH 178 478 191 HOH HOH A . E 4 HOH 179 479 157 HOH HOH A . E 4 HOH 180 480 29 HOH HOH A . E 4 HOH 181 481 55 HOH HOH A . E 4 HOH 182 482 98 HOH HOH A . E 4 HOH 183 483 145 HOH HOH A . E 4 HOH 184 484 171 HOH HOH A . E 4 HOH 185 485 18 HOH HOH A . E 4 HOH 186 486 101 HOH HOH A . E 4 HOH 187 487 180 HOH HOH A . E 4 HOH 188 488 133 HOH HOH A . E 4 HOH 189 489 20 HOH HOH A . E 4 HOH 190 490 116 HOH HOH A . E 4 HOH 191 491 160 HOH HOH A . E 4 HOH 192 492 190 HOH HOH A . E 4 HOH 193 493 170 HOH HOH A . E 4 HOH 194 494 125 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 20 ? CG ? A GLU 23 CG 2 1 Y 1 A GLU 20 ? CD ? A GLU 23 CD 3 1 Y 1 A GLU 20 ? OE1 ? A GLU 23 OE1 4 1 Y 1 A GLU 20 ? OE2 ? A GLU 23 OE2 5 1 Y 1 A LYS 25 ? CG ? A LYS 28 CG 6 1 Y 1 A LYS 25 ? CD ? A LYS 28 CD 7 1 Y 1 A LYS 25 ? CE ? A LYS 28 CE 8 1 Y 1 A LYS 25 ? NZ ? A LYS 28 NZ 9 1 Y 1 A GLU 36 ? CG ? A GLU 39 CG 10 1 Y 1 A GLU 36 ? CD ? A GLU 39 CD 11 1 Y 1 A GLU 36 ? OE1 ? A GLU 39 OE1 12 1 Y 1 A GLU 36 ? OE2 ? A GLU 39 OE2 13 1 Y 1 A GLU 37 ? CG ? A GLU 40 CG 14 1 Y 1 A GLU 37 ? CD ? A GLU 40 CD 15 1 Y 1 A GLU 37 ? OE1 ? A GLU 40 OE1 16 1 Y 1 A GLU 37 ? OE2 ? A GLU 40 OE2 17 1 Y 1 A LYS 40 ? CG ? A LYS 43 CG 18 1 Y 1 A LYS 40 ? CD ? A LYS 43 CD 19 1 Y 1 A LYS 40 ? CE ? A LYS 43 CE 20 1 Y 1 A LYS 40 ? NZ ? A LYS 43 NZ 21 1 Y 1 A GLU 47 ? CG ? A GLU 50 CG 22 1 Y 1 A GLU 47 ? CD ? A GLU 50 CD 23 1 Y 1 A GLU 47 ? OE1 ? A GLU 50 OE1 24 1 Y 1 A GLU 47 ? OE2 ? A GLU 50 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20 ? 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20 ? 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.8.1 ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . ? 6 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . ? 7 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.70 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9V3A _cell.details ? _cell.formula_units_Z ? _cell.length_a 29.501 _cell.length_a_esd ? _cell.length_b 65.893 _cell.length_b_esd ? _cell.length_c 29.513 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 2 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9V3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9V3A _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25.5% (w/v) PEG 4000, 170 mM Ammonium sulfate, 15% (v/v) Glycerol' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 181 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU HyPix-6000HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-05-25 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'Cu FINE FOCUS' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 17.91 _reflns.entry_id 9V3A _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 26.93 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7301 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.96 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.88 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star 0.999 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.13 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 6.83 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1121 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.1481 _reflns_shell.pdbx_Rpim_I_all 0.0798 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.969 _reflns_shell.pdbx_CC_star 0.992 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.1238 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9V3A _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 26.93 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7301 _refine.ls_number_reflns_R_free 774 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.96 _refine.ls_percent_reflns_R_free 10.19 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2341 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2021 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.06 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.13 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.24 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 26.93 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 1157 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 938 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 953 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.887 ? 1278 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 16.942 ? 369 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.045 ? 143 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 162 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.00 2.13 . . 134 1115 97.00 . . . . 0.1925 . . . . . . . . . . . . . . . 0.2879 'X-RAY DIFFRACTION' 2.13 2.29 . . 132 1120 99.00 . . . . 0.1773 . . . . . . . . . . . . . . . 0.2516 'X-RAY DIFFRACTION' 2.29 2.52 . . 128 1134 99.00 . . . . 0.1958 . . . . . . . . . . . . . . . 0.3038 'X-RAY DIFFRACTION' 2.52 2.88 . . 118 1138 99.00 . . . . 0.1922 . . . . . . . . . . . . . . . 0.2528 'X-RAY DIFFRACTION' 2.88 3.63 . . 127 1141 100.00 . . . . 0.1793 . . . . . . . . . . . . . . . 0.2311 'X-RAY DIFFRACTION' 3.63 26.93 . . 135 1170 100.00 . . . . 0.1790 . . . . . . . . . . . . . . . 0.2144 # _struct.entry_id 9V3A _struct.title 'Crystal structure of de novo designed serotonin binder SROb2_26_L7F' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9V3A _struct_keywords.text 'small molecule binding complex, de novo protein, serotonin binding protein' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9V3A _struct_ref.pdbx_db_accession 9V3A _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9V3A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 123 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9V3A _struct_ref_seq.db_align_beg -2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 120 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -2 _struct_ref_seq.pdbx_auth_seq_align_end 120 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 810 ? 1 MORE -5 ? 1 'SSA (A^2)' 7130 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 1 ? GLY A 20 ? GLY A -2 GLY A 17 1 ? 20 HELX_P HELX_P2 AA2 PRO A 22 ? GLY A 46 ? PRO A 19 GLY A 43 1 ? 25 HELX_P HELX_P3 AA3 PRO A 48 ? GLY A 69 ? PRO A 45 GLY A 66 1 ? 22 HELX_P HELX_P4 AA4 GLY A 69 ? LYS A 79 ? GLY A 66 LYS A 76 1 ? 11 HELX_P HELX_P5 AA5 HIS A 86 ? LYS A 104 ? HIS A 83 LYS A 101 1 ? 19 HELX_P HELX_P6 AA6 ASN A 108 ? ALA A 123 ? ASN A 105 ALA A 120 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 9V3A _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y+1/2,-z # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 78 ? A LYS 81 2 1 Y 1 A ASN 79 ? A ASN 82 3 1 Y 1 A GLY 80 ? A GLY 83 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GOL C1 C N N 123 GOL O1 O N N 124 GOL C2 C N N 125 GOL O2 O N N 126 GOL C3 C N N 127 GOL O3 O N N 128 GOL H11 H N N 129 GOL H12 H N N 130 GOL HO1 H N N 131 GOL H2 H N N 132 GOL HO2 H N N 133 GOL H31 H N N 134 GOL H32 H N N 135 GOL HO3 H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 PHE N N N N 230 PHE CA C N S 231 PHE C C N N 232 PHE O O N N 233 PHE CB C N N 234 PHE CG C Y N 235 PHE CD1 C Y N 236 PHE CD2 C Y N 237 PHE CE1 C Y N 238 PHE CE2 C Y N 239 PHE CZ C Y N 240 PHE OXT O N N 241 PHE H H N N 242 PHE H2 H N N 243 PHE HA H N N 244 PHE HB2 H N N 245 PHE HB3 H N N 246 PHE HD1 H N N 247 PHE HD2 H N N 248 PHE HE1 H N N 249 PHE HE2 H N N 250 PHE HZ H N N 251 PHE HXT H N N 252 PRO N N N N 253 PRO CA C N S 254 PRO C C N N 255 PRO O O N N 256 PRO CB C N N 257 PRO CG C N N 258 PRO CD C N N 259 PRO OXT O N N 260 PRO H H N N 261 PRO HA H N N 262 PRO HB2 H N N 263 PRO HB3 H N N 264 PRO HG2 H N N 265 PRO HG3 H N N 266 PRO HD2 H N N 267 PRO HD3 H N N 268 PRO HXT H N N 269 SER N N N N 270 SER CA C N S 271 SER C C N N 272 SER O O N N 273 SER CB C N N 274 SER OG O N N 275 SER OXT O N N 276 SER H H N N 277 SER H2 H N N 278 SER HA H N N 279 SER HB2 H N N 280 SER HB3 H N N 281 SER HG H N N 282 SER HXT H N N 283 SRO OH O N N 284 SRO CZ3 C Y N 285 SRO CH2 C Y N 286 SRO CZ2 C Y N 287 SRO CE2 C Y N 288 SRO NE1 N Y N 289 SRO CD1 C Y N 290 SRO CG C Y N 291 SRO CD2 C Y N 292 SRO CE3 C Y N 293 SRO CB C N N 294 SRO CA C N N 295 SRO NZ N N N 296 SRO HOH H N N 297 SRO HH2 H N N 298 SRO HZ2 H N N 299 SRO HNE1 H N N 300 SRO HD1 H N N 301 SRO HE3 H N N 302 SRO HB1 H N N 303 SRO HB2 H N N 304 SRO HA1 H N N 305 SRO HA2 H N N 306 SRO HNZ1 H N N 307 SRO HNZ2 H N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TYR N N N N 326 TYR CA C N S 327 TYR C C N N 328 TYR O O N N 329 TYR CB C N N 330 TYR CG C Y N 331 TYR CD1 C Y N 332 TYR CD2 C Y N 333 TYR CE1 C Y N 334 TYR CE2 C Y N 335 TYR CZ C Y N 336 TYR OH O N N 337 TYR OXT O N N 338 TYR H H N N 339 TYR H2 H N N 340 TYR HA H N N 341 TYR HB2 H N N 342 TYR HB3 H N N 343 TYR HD1 H N N 344 TYR HD2 H N N 345 TYR HE1 H N N 346 TYR HE2 H N N 347 TYR HH H N N 348 TYR HXT H N N 349 VAL N N N N 350 VAL CA C N S 351 VAL C C N N 352 VAL O O N N 353 VAL CB C N N 354 VAL CG1 C N N 355 VAL CG2 C N N 356 VAL OXT O N N 357 VAL H H N N 358 VAL H2 H N N 359 VAL HA H N N 360 VAL HB H N N 361 VAL HG11 H N N 362 VAL HG12 H N N 363 VAL HG13 H N N 364 VAL HG21 H N N 365 VAL HG22 H N N 366 VAL HG23 H N N 367 VAL HXT H N N 368 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GOL C1 O1 sing N N 116 GOL C1 C2 sing N N 117 GOL C1 H11 sing N N 118 GOL C1 H12 sing N N 119 GOL O1 HO1 sing N N 120 GOL C2 O2 sing N N 121 GOL C2 C3 sing N N 122 GOL C2 H2 sing N N 123 GOL O2 HO2 sing N N 124 GOL C3 O3 sing N N 125 GOL C3 H31 sing N N 126 GOL C3 H32 sing N N 127 GOL O3 HO3 sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 PHE N CA sing N N 218 PHE N H sing N N 219 PHE N H2 sing N N 220 PHE CA C sing N N 221 PHE CA CB sing N N 222 PHE CA HA sing N N 223 PHE C O doub N N 224 PHE C OXT sing N N 225 PHE CB CG sing N N 226 PHE CB HB2 sing N N 227 PHE CB HB3 sing N N 228 PHE CG CD1 doub Y N 229 PHE CG CD2 sing Y N 230 PHE CD1 CE1 sing Y N 231 PHE CD1 HD1 sing N N 232 PHE CD2 CE2 doub Y N 233 PHE CD2 HD2 sing N N 234 PHE CE1 CZ doub Y N 235 PHE CE1 HE1 sing N N 236 PHE CE2 CZ sing Y N 237 PHE CE2 HE2 sing N N 238 PHE CZ HZ sing N N 239 PHE OXT HXT sing N N 240 PRO N CA sing N N 241 PRO N CD sing N N 242 PRO N H sing N N 243 PRO CA C sing N N 244 PRO CA CB sing N N 245 PRO CA HA sing N N 246 PRO C O doub N N 247 PRO C OXT sing N N 248 PRO CB CG sing N N 249 PRO CB HB2 sing N N 250 PRO CB HB3 sing N N 251 PRO CG CD sing N N 252 PRO CG HG2 sing N N 253 PRO CG HG3 sing N N 254 PRO CD HD2 sing N N 255 PRO CD HD3 sing N N 256 PRO OXT HXT sing N N 257 SER N CA sing N N 258 SER N H sing N N 259 SER N H2 sing N N 260 SER CA C sing N N 261 SER CA CB sing N N 262 SER CA HA sing N N 263 SER C O doub N N 264 SER C OXT sing N N 265 SER CB OG sing N N 266 SER CB HB2 sing N N 267 SER CB HB3 sing N N 268 SER OG HG sing N N 269 SER OXT HXT sing N N 270 SRO OH CZ3 sing N N 271 SRO OH HOH sing N N 272 SRO CZ3 CE3 doub Y N 273 SRO CZ3 CH2 sing Y N 274 SRO CH2 CZ2 doub Y N 275 SRO CH2 HH2 sing N N 276 SRO CZ2 CE2 sing Y N 277 SRO CZ2 HZ2 sing N N 278 SRO CE2 NE1 sing Y N 279 SRO CE2 CD2 doub Y N 280 SRO NE1 CD1 sing Y N 281 SRO NE1 HNE1 sing N N 282 SRO CD1 CG doub Y N 283 SRO CD1 HD1 sing N N 284 SRO CG CB sing N N 285 SRO CG CD2 sing Y N 286 SRO CD2 CE3 sing Y N 287 SRO CE3 HE3 sing N N 288 SRO CB CA sing N N 289 SRO CB HB1 sing N N 290 SRO CB HB2 sing N N 291 SRO CA NZ sing N N 292 SRO CA HA1 sing N N 293 SRO CA HA2 sing N N 294 SRO NZ HNZ1 sing N N 295 SRO NZ HNZ2 sing N N 296 THR N CA sing N N 297 THR N H sing N N 298 THR N H2 sing N N 299 THR CA C sing N N 300 THR CA CB sing N N 301 THR CA HA sing N N 302 THR C O doub N N 303 THR C OXT sing N N 304 THR CB OG1 sing N N 305 THR CB CG2 sing N N 306 THR CB HB sing N N 307 THR OG1 HG1 sing N N 308 THR CG2 HG21 sing N N 309 THR CG2 HG22 sing N N 310 THR CG2 HG23 sing N N 311 THR OXT HXT sing N N 312 TYR N CA sing N N 313 TYR N H sing N N 314 TYR N H2 sing N N 315 TYR CA C sing N N 316 TYR CA CB sing N N 317 TYR CA HA sing N N 318 TYR C O doub N N 319 TYR C OXT sing N N 320 TYR CB CG sing N N 321 TYR CB HB2 sing N N 322 TYR CB HB3 sing N N 323 TYR CG CD1 doub Y N 324 TYR CG CD2 sing Y N 325 TYR CD1 CE1 sing Y N 326 TYR CD1 HD1 sing N N 327 TYR CD2 CE2 doub Y N 328 TYR CD2 HD2 sing N N 329 TYR CE1 CZ doub Y N 330 TYR CE1 HE1 sing N N 331 TYR CE2 CZ sing Y N 332 TYR CE2 HE2 sing N N 333 TYR CZ OH sing N N 334 TYR OH HH sing N N 335 TYR OXT HXT sing N N 336 VAL N CA sing N N 337 VAL N H sing N N 338 VAL N H2 sing N N 339 VAL CA C sing N N 340 VAL CA CB sing N N 341 VAL CA HA sing N N 342 VAL C O doub N N 343 VAL C OXT sing N N 344 VAL CB CG1 sing N N 345 VAL CB CG2 sing N N 346 VAL CB HB sing N N 347 VAL CG1 HG11 sing N N 348 VAL CG1 HG12 sing N N 349 VAL CG1 HG13 sing N N 350 VAL CG2 HG21 sing N N 351 VAL CG2 HG22 sing N N 352 VAL CG2 HG23 sing N N 353 VAL OXT HXT sing N N 354 # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 2022YFA1303700 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'de novo designed model' # _space_group.crystal_system monoclinic _space_group.IT_number 4 _space_group.name_H-M_alt 'P 1 21 1' _space_group.name_Hall 'P 2yb' _space_group.id 1 # _atom_sites.entry_id 9V3A _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.033897 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000413 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015176 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033885 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #