data_9V88 # _entry.id 9V88 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.413 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9V88 pdb_00009v88 10.2210/pdb9v88/pdb WWPDB D_1300058309 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-06-03 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9V88 _pdbx_database_status.recvd_initial_deposition_date 2025-05-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email mhho@nchu.edu.tw _pdbx_contact_author.name_first Ming-Hon _pdbx_contact_author.name_last Hou _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4170-1527 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, S.C.' 1 0000-0001-5617-8447 'Hou, M.H.' 2 0000-0003-4170-1527 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of d(CGTTAACG)2 with a four-carbon linker containing quinoxaline-acridine asymmetric intercalator compound' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, S.C.' 1 0000-0001-5617-8447 primary 'Hou, M.H.' 2 0000-0003-4170-1527 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*CP*GP*TP*TP*AP*AP*CP*G)-3') ; 2426.617 2 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 3 non-polymer syn 'N-[4-(acridin-9-ylamino)butyl]quinoxaline-2-carboxamide' 421.494 1 ? ? ? ? 4 non-polymer nat 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DT)(DA)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTTAACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'N-[4-(acridin-9-ylamino)butyl]quinoxaline-2-carboxamide' XAU 4 'CALCIUM ION' CA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DC n 1 8 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 XAU non-polymer . 'N-[4-(acridin-9-ylamino)butyl]quinoxaline-2-carboxamide' ? 'C26 H23 N5 O' 421.494 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DG 8 8 8 DG DG B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id XAU _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id XAU _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT 1 101 101 ACT ACT A . D 3 XAU 1 102 101 XAU LIG A . E 2 ACT 1 103 23 ACT ACT A . F 4 CA 1 101 1 CA CA B . G 5 HOH 1 201 12 HOH HOH A . G 5 HOH 2 202 19 HOH HOH A . G 5 HOH 3 203 5 HOH HOH A . G 5 HOH 4 204 13 HOH HOH A . G 5 HOH 5 205 7 HOH HOH A . G 5 HOH 6 206 21 HOH HOH A . G 5 HOH 7 207 5 HOH HOH A . G 5 HOH 8 208 2 HOH HOH A . G 5 HOH 9 209 14 HOH HOH A . G 5 HOH 10 210 10 HOH HOH A . G 5 HOH 11 211 2 HOH HOH A . H 5 HOH 1 201 16 HOH HOH B . H 5 HOH 2 202 20 HOH HOH B . H 5 HOH 3 203 6 HOH HOH B . H 5 HOH 4 204 4 HOH HOH B . H 5 HOH 5 205 1 HOH HOH B . H 5 HOH 6 206 17 HOH HOH B . H 5 HOH 7 207 4 HOH HOH B . H 5 HOH 8 208 8 HOH HOH B . H 5 HOH 9 209 3 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487)' ? 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 98.88 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9V88 _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.817 _cell.length_a_esd ? _cell.length_b 40.150 _cell.length_b_esd ? _cell.length_c 24.318 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9V88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9V88 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.37 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.6mM Oligonucleotide, 0.6mM QA4, 100mM Sodium cacodylate pH 6.5, 200mM Calcium acetate hydrate, 18% v/v PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-09-02 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97626 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE TPS 07A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97626 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'TPS 07A' _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9V88 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.92 _reflns.d_resolution_low 30.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3366 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.049 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.052 _reflns.pdbx_Rpim_I_all 0.030 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star 1.000 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.93 2.00 ? ? ? ? ? ? 349 ? ? ? ? ? ? ? ? ? ? ? 3.2 1.069 ? ? 0.166 0.092 ? 1 1 0.980 0.995 ? 96.7 ? 0.138 ? ? ? ? ? ? ? ? ? 2.00 2.08 ? ? ? ? ? ? 313 ? ? ? ? ? ? ? ? ? ? ? 3.3 1.048 ? ? 0.137 0.076 ? 2 1 0.983 0.996 ? 95.7 ? 0.113 ? ? ? ? ? ? ? ? ? 2.08 2.17 ? ? ? ? ? ? 352 ? ? ? ? ? ? ? ? ? ? ? 3.2 1.073 ? ? 0.113 0.063 ? 3 1 0.993 0.998 ? 97.2 ? 0.093 ? ? ? ? ? ? ? ? ? 2.17 2.29 ? ? ? ? ? ? 328 ? ? ? ? ? ? ? ? ? ? ? 3.2 1.094 ? ? 0.099 0.054 ? 4 1 0.988 0.997 ? 97.3 ? 0.083 ? ? ? ? ? ? ? ? ? 2.29 2.43 ? ? ? ? ? ? 358 ? ? ? ? ? ? ? ? ? ? ? 3.1 1.040 ? ? 0.078 0.045 ? 5 1 0.993 0.998 ? 97.8 ? 0.064 ? ? ? ? ? ? ? ? ? 2.43 2.62 ? ? ? ? ? ? 344 ? ? ? ? ? ? ? ? ? ? ? 2.8 1.080 ? ? 0.066 0.038 ? 6 1 0.994 0.999 ? 98.0 ? 0.054 ? ? ? ? ? ? ? ? ? 2.62 2.88 ? ? ? ? ? ? 328 ? ? ? ? ? ? ? ? ? ? ? 2.9 1.016 ? ? 0.059 0.035 ? 7 1 0.995 0.999 ? 96.5 ? 0.048 ? ? ? ? ? ? ? ? ? 2.88 3.30 ? ? ? ? ? ? 332 ? ? ? ? ? ? ? ? ? ? ? 2.7 1.004 ? ? 0.057 0.035 ? 8 1 0.996 0.999 ? 95.7 ? 0.045 ? ? ? ? ? ? ? ? ? 3.30 4.15 ? ? ? ? ? ? 329 ? ? ? ? ? ? ? ? ? ? ? 2.6 1.022 ? ? 0.048 0.028 ? 9 1 0.996 0.999 ? 91.9 ? 0.038 ? ? ? ? ? ? ? ? ? 4.15 30.00 ? ? ? ? ? ? 333 ? ? ? ? ? ? ? ? ? ? ? 2.6 1.014 ? ? 0.041 0.024 ? 10 1 0.996 0.999 ? 90.2 ? 0.033 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9V88 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.92 _refine.ls_d_res_low 15.41 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3352 _refine.ls_number_reflns_R_free 342 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.72 _refine.ls_percent_reflns_R_free 10.20 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2303 _refine.ls_R_factor_R_free 0.2643 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2266 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.46 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.38 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.28 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.92 _refine_hist.d_res_low 15.41 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 389 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 328 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 408 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 2.019 ? 615 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 34.375 ? 160 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.231 ? 64 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 21 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.92 2.00 . . 172 1517 97.00 . . . . 0.2798 . . . . . . . . . . . . . . . 0.3343 'X-RAY DIFFRACTION' 2.42 15.41 . . 170 1493 95.00 . . . . 0.2128 . . . . . . . . . . . . . . . 0.2461 # _struct.entry_id 9V88 _struct.title 'Crystal structure of d(CGTTAACG)2 with a four-carbon linker containing quinoxaline-acridine asymmetric intercalator compound' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9V88 _struct_keywords.text 'Ligand-DNA complex, Asymmetric intercalator, Bis-intercalation, Quinoxaline, Acridine, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9V88 _struct_ref.pdbx_db_accession 9V88 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9V88 A 1 ? 8 ? 9V88 1 ? 8 ? 1 8 2 1 9V88 B 1 ? 8 ? 9V88 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1080 ? 1 MORE -12 ? 1 'SSA (A^2)' 4140 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 OP1 ? ? ? 1_555 F CA . CA ? ? A DG 2 B CA 101 1_556 ? ? ? ? ? ? ? 2.336 ? ? metalc2 metalc ? ? G HOH . O ? ? ? 1_455 F CA . CA ? ? A HOH 202 B CA 101 1_555 ? ? ? ? ? ? ? 2.453 ? ? metalc3 metalc ? ? G HOH . O ? ? ? 1_554 F CA . CA ? ? A HOH 206 B CA 101 1_555 ? ? ? ? ? ? ? 2.247 ? ? metalc4 metalc ? ? B DG 2 OP1 ? ? ? 1_555 F CA . CA ? ? B DG 2 B CA 101 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc5 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 101 B HOH 202 1_454 ? ? ? ? ? ? ? 2.174 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 4 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 4 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 5 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 5 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 6 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 6 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 8 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 8 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 8 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? B CA 101 ? 1_556 O ? G HOH . ? A HOH 202 ? 1_455 51.4 ? 2 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? B CA 101 ? 1_556 O ? G HOH . ? A HOH 206 ? 1_554 47.8 ? 3 O ? G HOH . ? A HOH 202 ? 1_455 CA ? F CA . ? B CA 101 ? 1_556 O ? G HOH . ? A HOH 206 ? 1_554 4.6 ? 4 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? B CA 101 ? 1_556 OP1 ? B DG 2 ? B DG 2 ? 1_555 44.1 ? 5 O ? G HOH . ? A HOH 202 ? 1_455 CA ? F CA . ? B CA 101 ? 1_556 OP1 ? B DG 2 ? B DG 2 ? 1_555 7.9 ? 6 O ? G HOH . ? A HOH 206 ? 1_554 CA ? F CA . ? B CA 101 ? 1_556 OP1 ? B DG 2 ? B DG 2 ? 1_555 6.9 ? 7 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? F CA . ? B CA 101 ? 1_556 O ? H HOH . ? B HOH 202 ? 1_454 44.8 ? 8 O ? G HOH . ? A HOH 202 ? 1_455 CA ? F CA . ? B CA 101 ? 1_556 O ? H HOH . ? B HOH 202 ? 1_454 7.9 ? 9 O ? G HOH . ? A HOH 206 ? 1_554 CA ? F CA . ? B CA 101 ? 1_556 O ? H HOH . ? B HOH 202 ? 1_454 3.4 ? 10 OP1 ? B DG 2 ? B DG 2 ? 1_555 CA ? F CA . ? B CA 101 ? 1_556 O ? H HOH . ? B HOH 202 ? 1_454 7.2 ? # _pdbx_entry_details.entry_id 9V88 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 CA CA CA N N 8 DA OP3 O N N 9 DA P P N N 10 DA OP1 O N N 11 DA OP2 O N N 12 DA "O5'" O N N 13 DA "C5'" C N N 14 DA "C4'" C N R 15 DA "O4'" O N N 16 DA "C3'" C N S 17 DA "O3'" O N N 18 DA "C2'" C N N 19 DA "C1'" C N R 20 DA N9 N Y N 21 DA C8 C Y N 22 DA N7 N Y N 23 DA C5 C Y N 24 DA C6 C Y N 25 DA N6 N N N 26 DA N1 N Y N 27 DA C2 C Y N 28 DA N3 N Y N 29 DA C4 C Y N 30 DA HOP3 H N N 31 DA HOP2 H N N 32 DA "H5'" H N N 33 DA "H5''" H N N 34 DA "H4'" H N N 35 DA "H3'" H N N 36 DA "HO3'" H N N 37 DA "H2'" H N N 38 DA "H2''" H N N 39 DA "H1'" H N N 40 DA H8 H N N 41 DA H61 H N N 42 DA H62 H N N 43 DA H2 H N N 44 DC OP3 O N N 45 DC P P N N 46 DC OP1 O N N 47 DC OP2 O N N 48 DC "O5'" O N N 49 DC "C5'" C N N 50 DC "C4'" C N R 51 DC "O4'" O N N 52 DC "C3'" C N S 53 DC "O3'" O N N 54 DC "C2'" C N N 55 DC "C1'" C N R 56 DC N1 N N N 57 DC C2 C N N 58 DC O2 O N N 59 DC N3 N N N 60 DC C4 C N N 61 DC N4 N N N 62 DC C5 C N N 63 DC C6 C N N 64 DC HOP3 H N N 65 DC HOP2 H N N 66 DC "H5'" H N N 67 DC "H5''" H N N 68 DC "H4'" H N N 69 DC "H3'" H N N 70 DC "HO3'" H N N 71 DC "H2'" H N N 72 DC "H2''" H N N 73 DC "H1'" H N N 74 DC H41 H N N 75 DC H42 H N N 76 DC H5 H N N 77 DC H6 H N N 78 DG OP3 O N N 79 DG P P N N 80 DG OP1 O N N 81 DG OP2 O N N 82 DG "O5'" O N N 83 DG "C5'" C N N 84 DG "C4'" C N R 85 DG "O4'" O N N 86 DG "C3'" C N S 87 DG "O3'" O N N 88 DG "C2'" C N N 89 DG "C1'" C N R 90 DG N9 N Y N 91 DG C8 C Y N 92 DG N7 N Y N 93 DG C5 C Y N 94 DG C6 C N N 95 DG O6 O N N 96 DG N1 N N N 97 DG C2 C N N 98 DG N2 N N N 99 DG N3 N N N 100 DG C4 C Y N 101 DG HOP3 H N N 102 DG HOP2 H N N 103 DG "H5'" H N N 104 DG "H5''" H N N 105 DG "H4'" H N N 106 DG "H3'" H N N 107 DG "HO3'" H N N 108 DG "H2'" H N N 109 DG "H2''" H N N 110 DG "H1'" H N N 111 DG H8 H N N 112 DG H1 H N N 113 DG H21 H N N 114 DG H22 H N N 115 DT OP3 O N N 116 DT P P N N 117 DT OP1 O N N 118 DT OP2 O N N 119 DT "O5'" O N N 120 DT "C5'" C N N 121 DT "C4'" C N R 122 DT "O4'" O N N 123 DT "C3'" C N S 124 DT "O3'" O N N 125 DT "C2'" C N N 126 DT "C1'" C N R 127 DT N1 N N N 128 DT C2 C N N 129 DT O2 O N N 130 DT N3 N N N 131 DT C4 C N N 132 DT O4 O N N 133 DT C5 C N N 134 DT C7 C N N 135 DT C6 C N N 136 DT HOP3 H N N 137 DT HOP2 H N N 138 DT "H5'" H N N 139 DT "H5''" H N N 140 DT "H4'" H N N 141 DT "H3'" H N N 142 DT "HO3'" H N N 143 DT "H2'" H N N 144 DT "H2''" H N N 145 DT "H1'" H N N 146 DT H3 H N N 147 DT H71 H N N 148 DT H72 H N N 149 DT H73 H N N 150 DT H6 H N N 151 HOH O O N N 152 HOH H1 H N N 153 HOH H2 H N N 154 XAU C17 C N N 155 XAU C20 C Y N 156 XAU C21 C Y N 157 XAU C24 C Y N 158 XAU C26 C Y N 159 XAU C28 C Y N 160 XAU C19 C Y N 161 XAU C23 C Y N 162 XAU C25 C Y N 163 XAU C27 C Y N 164 XAU C29 C Y N 165 XAU C30 C Y N 166 XAU C31 C Y N 167 XAU C32 C Y N 168 XAU CBD C N N 169 XAU CBE C N N 170 XAU CBF C N N 171 XAU CBH C N N 172 XAU CBI C Y N 173 XAU CBL C Y N 174 XAU CBM C Y N 175 XAU CBO C Y N 176 XAU CBP C Y N 177 XAU CBQ C Y N 178 XAU CBS C Y N 179 XAU CBY C Y N 180 XAU N18 N N N 181 XAU N22 N Y N 182 XAU NBG N N N 183 XAU NBK N Y N 184 XAU NBN N Y N 185 XAU OBJ O N N 186 XAU H1 H N N 187 XAU H2 H N N 188 XAU H3 H N N 189 XAU H4 H N N 190 XAU H5 H N N 191 XAU H6 H N N 192 XAU H7 H N N 193 XAU H8 H N N 194 XAU H9 H N N 195 XAU H10 H N N 196 XAU H11 H N N 197 XAU H12 H N N 198 XAU H13 H N N 199 XAU H14 H N N 200 XAU H15 H N N 201 XAU H16 H N N 202 XAU H17 H N N 203 XAU H18 H N N 204 XAU H19 H N N 205 XAU H20 H N N 206 XAU H21 H N N 207 XAU H22 H N N 208 XAU H23 H N N 209 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 DA OP3 P sing N N 7 DA OP3 HOP3 sing N N 8 DA P OP1 doub N N 9 DA P OP2 sing N N 10 DA P "O5'" sing N N 11 DA OP2 HOP2 sing N N 12 DA "O5'" "C5'" sing N N 13 DA "C5'" "C4'" sing N N 14 DA "C5'" "H5'" sing N N 15 DA "C5'" "H5''" sing N N 16 DA "C4'" "O4'" sing N N 17 DA "C4'" "C3'" sing N N 18 DA "C4'" "H4'" sing N N 19 DA "O4'" "C1'" sing N N 20 DA "C3'" "O3'" sing N N 21 DA "C3'" "C2'" sing N N 22 DA "C3'" "H3'" sing N N 23 DA "O3'" "HO3'" sing N N 24 DA "C2'" "C1'" sing N N 25 DA "C2'" "H2'" sing N N 26 DA "C2'" "H2''" sing N N 27 DA "C1'" N9 sing N N 28 DA "C1'" "H1'" sing N N 29 DA N9 C8 sing Y N 30 DA N9 C4 sing Y N 31 DA C8 N7 doub Y N 32 DA C8 H8 sing N N 33 DA N7 C5 sing Y N 34 DA C5 C6 sing Y N 35 DA C5 C4 doub Y N 36 DA C6 N6 sing N N 37 DA C6 N1 doub Y N 38 DA N6 H61 sing N N 39 DA N6 H62 sing N N 40 DA N1 C2 sing Y N 41 DA C2 N3 doub Y N 42 DA C2 H2 sing N N 43 DA N3 C4 sing Y N 44 DC OP3 P sing N N 45 DC OP3 HOP3 sing N N 46 DC P OP1 doub N N 47 DC P OP2 sing N N 48 DC P "O5'" sing N N 49 DC OP2 HOP2 sing N N 50 DC "O5'" "C5'" sing N N 51 DC "C5'" "C4'" sing N N 52 DC "C5'" "H5'" sing N N 53 DC "C5'" "H5''" sing N N 54 DC "C4'" "O4'" sing N N 55 DC "C4'" "C3'" sing N N 56 DC "C4'" "H4'" sing N N 57 DC "O4'" "C1'" sing N N 58 DC "C3'" "O3'" sing N N 59 DC "C3'" "C2'" sing N N 60 DC "C3'" "H3'" sing N N 61 DC "O3'" "HO3'" sing N N 62 DC "C2'" "C1'" sing N N 63 DC "C2'" "H2'" sing N N 64 DC "C2'" "H2''" sing N N 65 DC "C1'" N1 sing N N 66 DC "C1'" "H1'" sing N N 67 DC N1 C2 sing N N 68 DC N1 C6 sing N N 69 DC C2 O2 doub N N 70 DC C2 N3 sing N N 71 DC N3 C4 doub N N 72 DC C4 N4 sing N N 73 DC C4 C5 sing N N 74 DC N4 H41 sing N N 75 DC N4 H42 sing N N 76 DC C5 C6 doub N N 77 DC C5 H5 sing N N 78 DC C6 H6 sing N N 79 DG OP3 P sing N N 80 DG OP3 HOP3 sing N N 81 DG P OP1 doub N N 82 DG P OP2 sing N N 83 DG P "O5'" sing N N 84 DG OP2 HOP2 sing N N 85 DG "O5'" "C5'" sing N N 86 DG "C5'" "C4'" sing N N 87 DG "C5'" "H5'" sing N N 88 DG "C5'" "H5''" sing N N 89 DG "C4'" "O4'" sing N N 90 DG "C4'" "C3'" sing N N 91 DG "C4'" "H4'" sing N N 92 DG "O4'" "C1'" sing N N 93 DG "C3'" "O3'" sing N N 94 DG "C3'" "C2'" sing N N 95 DG "C3'" "H3'" sing N N 96 DG "O3'" "HO3'" sing N N 97 DG "C2'" "C1'" sing N N 98 DG "C2'" "H2'" sing N N 99 DG "C2'" "H2''" sing N N 100 DG "C1'" N9 sing N N 101 DG "C1'" "H1'" sing N N 102 DG N9 C8 sing Y N 103 DG N9 C4 sing Y N 104 DG C8 N7 doub Y N 105 DG C8 H8 sing N N 106 DG N7 C5 sing Y N 107 DG C5 C6 sing N N 108 DG C5 C4 doub Y N 109 DG C6 O6 doub N N 110 DG C6 N1 sing N N 111 DG N1 C2 sing N N 112 DG N1 H1 sing N N 113 DG C2 N2 sing N N 114 DG C2 N3 doub N N 115 DG N2 H21 sing N N 116 DG N2 H22 sing N N 117 DG N3 C4 sing N N 118 DT OP3 P sing N N 119 DT OP3 HOP3 sing N N 120 DT P OP1 doub N N 121 DT P OP2 sing N N 122 DT P "O5'" sing N N 123 DT OP2 HOP2 sing N N 124 DT "O5'" "C5'" sing N N 125 DT "C5'" "C4'" sing N N 126 DT "C5'" "H5'" sing N N 127 DT "C5'" "H5''" sing N N 128 DT "C4'" "O4'" sing N N 129 DT "C4'" "C3'" sing N N 130 DT "C4'" "H4'" sing N N 131 DT "O4'" "C1'" sing N N 132 DT "C3'" "O3'" sing N N 133 DT "C3'" "C2'" sing N N 134 DT "C3'" "H3'" sing N N 135 DT "O3'" "HO3'" sing N N 136 DT "C2'" "C1'" sing N N 137 DT "C2'" "H2'" sing N N 138 DT "C2'" "H2''" sing N N 139 DT "C1'" N1 sing N N 140 DT "C1'" "H1'" sing N N 141 DT N1 C2 sing N N 142 DT N1 C6 sing N N 143 DT C2 O2 doub N N 144 DT C2 N3 sing N N 145 DT N3 C4 sing N N 146 DT N3 H3 sing N N 147 DT C4 O4 doub N N 148 DT C4 C5 sing N N 149 DT C5 C7 sing N N 150 DT C5 C6 doub N N 151 DT C7 H71 sing N N 152 DT C7 H72 sing N N 153 DT C7 H73 sing N N 154 DT C6 H6 sing N N 155 HOH O H1 sing N N 156 HOH O H2 sing N N 157 XAU C30 C31 doub Y N 158 XAU C30 C29 sing Y N 159 XAU C31 C32 sing Y N 160 XAU C29 C21 doub Y N 161 XAU C32 C20 doub Y N 162 XAU C21 C20 sing Y N 163 XAU C21 N22 sing Y N 164 XAU C20 C19 sing Y N 165 XAU N22 C23 doub Y N 166 XAU C17 N18 sing N N 167 XAU C17 CBD sing N N 168 XAU C19 N18 sing N N 169 XAU C19 C24 doub Y N 170 XAU C23 C24 sing Y N 171 XAU C23 C28 sing Y N 172 XAU CBE CBD sing N N 173 XAU CBE CBF sing N N 174 XAU C24 C25 sing Y N 175 XAU CBS CBY doub Y N 176 XAU CBS CBQ sing Y N 177 XAU CBY CBL sing Y N 178 XAU C28 C27 doub Y N 179 XAU CBQ CBP doub Y N 180 XAU C25 C26 doub Y N 181 XAU CBF NBG sing N N 182 XAU CBL NBK doub Y N 183 XAU CBL CBM sing Y N 184 XAU CBP CBM sing Y N 185 XAU NBK CBI sing Y N 186 XAU C27 C26 sing Y N 187 XAU CBM NBN doub Y N 188 XAU NBG CBH sing N N 189 XAU CBI CBH sing N N 190 XAU CBI CBO doub Y N 191 XAU NBN CBO sing Y N 192 XAU CBH OBJ doub N N 193 XAU C17 H1 sing N N 194 XAU C17 H2 sing N N 195 XAU C26 H3 sing N N 196 XAU C28 H4 sing N N 197 XAU C25 H5 sing N N 198 XAU C27 H6 sing N N 199 XAU C29 H7 sing N N 200 XAU C30 H8 sing N N 201 XAU C31 H9 sing N N 202 XAU C32 H10 sing N N 203 XAU CBD H11 sing N N 204 XAU CBD H12 sing N N 205 XAU CBE H13 sing N N 206 XAU CBE H14 sing N N 207 XAU CBF H15 sing N N 208 XAU CBF H16 sing N N 209 XAU CBO H17 sing N N 210 XAU CBP H18 sing N N 211 XAU CBQ H19 sing N N 212 XAU CBS H20 sing N N 213 XAU CBY H21 sing N N 214 XAU N18 H22 sing N N 215 XAU NBG H23 sing N N 216 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9V88 'double helix' 9V88 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 8 1_555 0.240 -0.233 -0.216 7.220 -2.163 -2.335 1 A_DC1:DG8_B A 1 ? B 8 ? 19 1 1 A DG 2 1_555 B DC 7 1_555 -0.306 -0.285 0.052 -17.382 -3.615 -1.986 2 A_DG2:DC7_B A 2 ? B 7 ? 19 1 1 A DT 3 1_555 B DA 6 1_555 -0.585 -0.222 0.427 -9.644 -10.599 2.781 3 A_DT3:DA6_B A 3 ? B 6 ? 20 1 1 A DT 4 1_555 B DA 5 1_555 -0.042 -0.265 -0.106 -0.768 -13.275 5.432 4 A_DT4:DA5_B A 4 ? B 5 ? 20 1 1 A DA 5 1_555 B DT 4 1_555 0.082 -0.193 -0.035 1.408 -12.992 4.989 5 A_DA5:DT4_B A 5 ? B 4 ? 20 1 1 A DA 6 1_555 B DT 3 1_555 0.518 -0.157 0.388 7.527 -8.746 3.738 6 A_DA6:DT3_B A 6 ? B 3 ? 20 1 1 A DC 7 1_555 B DG 2 1_555 0.560 -0.258 -0.658 29.632 -10.252 2.048 7 A_DC7:DG2_B A 7 ? B 2 ? 19 1 1 A DG 8 1_555 B DC 1 1_555 -0.106 -0.265 -0.351 -2.536 0.576 -2.834 8 A_DG8:DC1_B A 8 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.076 -0.016 3.219 -4.267 4.815 25.698 -1.293 -0.950 3.135 10.615 9.406 26.478 1 AA_DG2DT3:DA6DC7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DT 3 1_555 B DA 6 1_555 A DT 4 1_555 B DA 5 1_555 -0.072 0.175 3.068 3.392 7.618 31.345 -0.952 0.693 3.003 13.796 -6.144 32.408 2 AA_DT3DT4:DA5DA6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DT 4 1_555 B DA 5 1_555 A DA 5 1_555 B DT 4 1_555 0.025 1.048 3.325 -0.436 13.755 36.909 -0.203 -0.093 3.483 20.857 0.661 39.307 3 AA_DT4DA5:DT4DA5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DA 5 1_555 B DT 4 1_555 A DA 6 1_555 B DT 3 1_555 0.233 0.168 3.156 -2.951 7.635 31.803 -0.972 -0.903 3.079 13.652 5.276 32.813 4 AA_DA5DA6:DT3DT4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DA 6 1_555 B DT 3 1_555 A DC 7 1_555 B DG 2 1_555 0.026 0.163 2.808 10.228 1.889 26.572 -0.042 1.964 2.641 3.923 -21.247 28.501 5 AA_DA6DC7:DG2DT3_BB A 6 ? B 3 ? A 7 ? B 2 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Science and Technology (MoST, Taiwan)' Taiwan '109-2628-M- 005-001-MY4' 1 'Ministry of Science and Technology (MoST, Taiwan)' Taiwan 109-2311-B-005-007-MY3 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'BIOVIA Discovery Studio' # _atom_sites.entry_id 9V88 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.041987 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006560 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024907 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041621 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O P # loop_ #