data_9V89 # _entry.id 9V89 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.413 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9V89 pdb_00009v89 10.2210/pdb9v89/pdb WWPDB D_1300058310 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-06-03 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9V89 _pdbx_database_status.recvd_initial_deposition_date 2025-05-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email mhho@nchu.edu.tw _pdbx_contact_author.name_first Ming-Hon _pdbx_contact_author.name_last Hou _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4170-1527 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, S.C.' 1 0000-0001-5617-8447 'Hou, M.H.' 2 0000-0003-4170-1527 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of d(CGTTAACG)2 with a five-carbon linker containing quinoxaline-acridine asymmetric intercalator compound' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, S.C.' 1 0000-0001-5617-8447 primary 'Hou, M.H.' 2 0000-0003-4170-1527 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*CP*GP*TP*TP*AP*AP*CP*G)-3') ; 2426.617 2 ? ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 2 ? ? ? ? 3 non-polymer syn 'N-[5-(acridin-9-ylamino)pentyl]quinoxaline-2-carboxamide' 435.520 1 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 5 water nat water 18.015 80 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DT)(DA)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTTAACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 'N-[5-(acridin-9-ylamino)pentyl]quinoxaline-2-carboxamide' W1H 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DC n 1 8 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 W1H non-polymer . 'N-[5-(acridin-9-ylamino)pentyl]quinoxaline-2-carboxamide' ? 'C27 H25 N5 O' 435.520 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DG 8 8 8 DG DG B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id W1H _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id W1H _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO 1 101 2 CO CO A . D 2 CO 1 102 3 CO CO A . E 3 W1H 1 101 101 W1H F1R B . F 4 MPD 1 102 111 MPD MPD B . G 5 HOH 1 201 9 HOH HOH A . G 5 HOH 2 202 50 HOH HOH A . G 5 HOH 3 203 30 HOH HOH A . G 5 HOH 4 204 3 HOH HOH A . G 5 HOH 5 205 19 HOH HOH A . G 5 HOH 6 206 84 HOH HOH A . G 5 HOH 7 207 57 HOH HOH A . G 5 HOH 8 208 45 HOH HOH A . G 5 HOH 9 209 14 HOH HOH A . G 5 HOH 10 210 12 HOH HOH A . G 5 HOH 11 211 24 HOH HOH A . G 5 HOH 12 212 23 HOH HOH A . G 5 HOH 13 213 106 HOH HOH A . G 5 HOH 14 214 53 HOH HOH A . G 5 HOH 15 215 87 HOH HOH A . G 5 HOH 16 216 69 HOH HOH A . G 5 HOH 17 217 7 HOH HOH A . G 5 HOH 18 218 81 HOH HOH A . G 5 HOH 19 219 29 HOH HOH A . G 5 HOH 20 220 75 HOH HOH A . G 5 HOH 21 221 73 HOH HOH A . G 5 HOH 22 222 74 HOH HOH A . G 5 HOH 23 223 68 HOH HOH A . G 5 HOH 24 224 109 HOH HOH A . G 5 HOH 25 225 83 HOH HOH A . G 5 HOH 26 226 76 HOH HOH A . G 5 HOH 27 227 77 HOH HOH A . G 5 HOH 28 228 78 HOH HOH A . G 5 HOH 29 229 80 HOH HOH A . G 5 HOH 30 230 48 HOH HOH A . G 5 HOH 31 231 58 HOH HOH A . G 5 HOH 32 232 88 HOH HOH A . G 5 HOH 33 233 98 HOH HOH A . G 5 HOH 34 234 38 HOH HOH A . G 5 HOH 35 235 51 HOH HOH A . G 5 HOH 36 236 34 HOH HOH A . G 5 HOH 37 237 104 HOH HOH A . H 5 HOH 1 201 64 HOH HOH B . H 5 HOH 2 202 44 HOH HOH B . H 5 HOH 3 203 56 HOH HOH B . H 5 HOH 4 204 40 HOH HOH B . H 5 HOH 5 205 49 HOH HOH B . H 5 HOH 6 206 21 HOH HOH B . H 5 HOH 7 207 4 HOH HOH B . H 5 HOH 8 208 86 HOH HOH B . H 5 HOH 9 209 6 HOH HOH B . H 5 HOH 10 210 22 HOH HOH B . H 5 HOH 11 211 8 HOH HOH B . H 5 HOH 12 212 28 HOH HOH B . H 5 HOH 13 213 10 HOH HOH B . H 5 HOH 14 214 2 HOH HOH B . H 5 HOH 15 215 15 HOH HOH B . H 5 HOH 16 216 41 HOH HOH B . H 5 HOH 17 217 18 HOH HOH B . H 5 HOH 18 218 31 HOH HOH B . H 5 HOH 19 219 36 HOH HOH B . H 5 HOH 20 220 37 HOH HOH B . H 5 HOH 21 221 13 HOH HOH B . H 5 HOH 22 222 70 HOH HOH B . H 5 HOH 23 223 107 HOH HOH B . H 5 HOH 24 224 32 HOH HOH B . H 5 HOH 25 225 11 HOH HOH B . H 5 HOH 26 226 43 HOH HOH B . H 5 HOH 27 227 25 HOH HOH B . H 5 HOH 28 228 16 HOH HOH B . H 5 HOH 29 229 66 HOH HOH B . H 5 HOH 30 230 72 HOH HOH B . H 5 HOH 31 231 71 HOH HOH B . H 5 HOH 32 232 67 HOH HOH B . H 5 HOH 33 233 65 HOH HOH B . H 5 HOH 34 234 91 HOH HOH B . H 5 HOH 35 235 26 HOH HOH B . H 5 HOH 36 236 60 HOH HOH B . H 5 HOH 37 237 108 HOH HOH B . H 5 HOH 38 238 92 HOH HOH B . H 5 HOH 39 239 110 HOH HOH B . H 5 HOH 40 240 59 HOH HOH B . H 5 HOH 41 241 55 HOH HOH B . H 5 HOH 42 242 20 HOH HOH B . H 5 HOH 43 243 54 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.18.2_3874: ???)' ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487)' ? 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9V89 _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.835 _cell.length_a_esd ? _cell.length_b 34.948 _cell.length_b_esd ? _cell.length_c 47.901 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9V89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9V89 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.6mM oligonucleotides, 0.6mM QA5, 50mM 2-(N-morpholino)ethanesulfonic acid hydrate (pH 6.5), 200mM potassium chloride, 5mM hexammine cobalt(III) chloride, 15% (v/v) 2-methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-09-28 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97626 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE TPS 07A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97626 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'TPS 07A' _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9V89 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.27 _reflns.d_resolution_low 30.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10857 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.054 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.066 _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star 1.000 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.27 1.32 ? ? ? ? ? ? 1052 ? ? ? ? ? ? ? ? ? ? ? 6.4 1.038 ? ? 0.221 0.086 ? 1 1 0.973 0.993 ? 96.8 ? 0.203 ? ? ? ? ? ? ? ? ? 1.32 1.37 ? ? ? ? ? ? 1045 ? ? ? ? ? ? ? ? ? ? ? 6.3 1.089 ? ? 0.193 0.076 ? 2 1 0.973 0.993 ? 96.7 ? 0.176 ? ? ? ? ? ? ? ? ? 1.37 1.43 ? ? ? ? ? ? 1034 ? ? ? ? ? ? ? ? ? ? ? 6.4 1.093 ? ? 0.166 0.065 ? 3 1 0.979 0.995 ? 95.8 ? 0.152 ? ? ? ? ? ? ? ? ? 1.43 1.51 ? ? ? ? ? ? 1060 ? ? ? ? ? ? ? ? ? ? ? 6.3 1.005 ? ? 0.139 0.055 ? 4 1 0.987 0.997 ? 97.1 ? 0.127 ? ? ? ? ? ? ? ? ? 1.51 1.60 ? ? ? ? ? ? 1105 ? ? ? ? ? ? ? ? ? ? ? 6.1 1.078 ? ? 0.115 0.047 ? 5 1 0.990 0.998 ? 98.7 ? 0.105 ? ? ? ? ? ? ? ? ? 1.60 1.72 ? ? ? ? ? ? 1074 ? ? ? ? ? ? ? ? ? ? ? 5.8 1.071 ? ? 0.092 0.039 ? 6 1 0.992 0.998 ? 98.3 ? 0.083 ? ? ? ? ? ? ? ? ? 1.72 1.90 ? ? ? ? ? ? 1070 ? ? ? ? ? ? ? ? ? ? ? 5.7 1.034 ? ? 0.081 0.034 ? 7 1 0.994 0.998 ? 97.3 ? 0.073 ? ? ? ? ? ? ? ? ? 1.90 2.17 ? ? ? ? ? ? 1099 ? ? ? ? ? ? ? ? ? ? ? 5.5 1.010 ? ? 0.070 0.029 ? 8 1 0.995 0.999 ? 97.7 ? 0.063 ? ? ? ? ? ? ? ? ? 2.17 2.74 ? ? ? ? ? ? 1123 ? ? ? ? ? ? ? ? ? ? ? 5.7 1.080 ? ? 0.061 0.025 ? 9 1 0.997 0.999 ? 99.1 ? 0.055 ? ? ? ? ? ? ? ? ? 2.74 30.00 ? ? ? ? ? ? 1195 ? ? ? ? ? ? ? ? ? ? ? 5.1 1.035 ? ? 0.056 0.025 ? 10 1 0.996 0.999 ? 97.6 ? 0.050 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9V89 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.27 _refine.ls_d_res_low 23.95 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10803 _refine.ls_number_reflns_R_free 1081 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.57 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2141 _refine.ls_R_factor_R_free 0.2297 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2123 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.09 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.13 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.27 _refine_hist.d_res_low 23.95 _refine_hist.number_atoms_solvent 80 _refine_hist.number_atoms_total 451 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 328 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.011 ? 410 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.430 ? 620 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 34.419 ? 163 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.059 ? 65 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.014 ? 19 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.27 1.33 . . 131 1180 96.00 . . . . 0.2519 . . . . . . . . . . . . . . . 0.2895 'X-RAY DIFFRACTION' 1.33 1.40 . . 130 1165 96.00 . . . . 0.2392 . . . . . . . . . . . . . . . 0.2453 'X-RAY DIFFRACTION' 1.40 1.49 . . 132 1193 97.00 . . . . 0.2259 . . . . . . . . . . . . . . . 0.2511 'X-RAY DIFFRACTION' 1.49 1.60 . . 135 1214 98.00 . . . . 0.2144 . . . . . . . . . . . . . . . 0.2511 'X-RAY DIFFRACTION' 1.60 1.76 . . 134 1206 98.00 . . . . 0.1893 . . . . . . . . . . . . . . . 0.1998 'X-RAY DIFFRACTION' 1.76 2.02 . . 135 1212 98.00 . . . . 0.2020 . . . . . . . . . . . . . . . 0.2334 'X-RAY DIFFRACTION' 2.02 2.54 . . 137 1239 98.00 . . . . 0.2339 . . . . . . . . . . . . . . . 0.2599 'X-RAY DIFFRACTION' 2.54 23.95 . . 147 1313 98.00 . . . . 0.2034 . . . . . . . . . . . . . . . 0.2091 # _struct.entry_id 9V89 _struct.title 'Crystal structure of d(CGTTAACG)2 with a five-carbon linker containing quinoxaline-acridine asymmetric intercalator compound' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9V89 _struct_keywords.text 'Ligand-DNA complex, Asymmetric intercalator, Bis-intercalation, Quinoxaline, Acridine, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9V89 _struct_ref.pdbx_db_accession 9V89 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9V89 A 1 ? 8 ? 9V89 1 ? 8 ? 1 8 2 1 9V89 B 1 ? 8 ? 9V89 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1140 ? 1 MORE -20 ? 1 'SSA (A^2)' 4140 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 101 A HOH 216 1_555 ? ? ? ? ? ? ? 1.835 ? ? metalc2 metalc ? ? C CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 101 A HOH 223 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc3 metalc ? ? C CO . CO ? ? ? 1_555 H HOH . O ? ? A CO 101 B HOH 222 2_554 ? ? ? ? ? ? ? 2.057 ? ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 H HOH . O ? ? A CO 101 B HOH 230 2_554 ? ? ? ? ? ? ? 2.083 ? ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 H HOH . O ? ? A CO 101 B HOH 231 3_654 ? ? ? ? ? ? ? 1.983 ? ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 H HOH . O ? ? A CO 101 B HOH 232 3_654 ? ? ? ? ? ? ? 2.063 ? ? metalc7 metalc ? ? D CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 102 A HOH 220 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc8 metalc ? ? D CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 102 A HOH 221 3_644 ? ? ? ? ? ? ? 1.944 ? ? metalc9 metalc ? ? D CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 102 A HOH 222 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc10 metalc ? ? D CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 102 A HOH 226 1_555 ? ? ? ? ? ? ? 1.951 ? ? metalc11 metalc ? ? D CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 102 A HOH 227 3_644 ? ? ? ? ? ? ? 2.231 ? ? metalc12 metalc ? ? D CO . CO ? ? ? 1_555 G HOH . O ? ? A CO 102 A HOH 228 3_644 ? ? ? ? ? ? ? 2.196 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 1 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 4 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 4 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 5 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 5 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 6 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 6 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 8 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 8 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 8 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? G HOH . ? A HOH 216 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? G HOH . ? A HOH 223 ? 1_555 91.6 ? 2 O ? G HOH . ? A HOH 216 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 222 ? 2_554 91.8 ? 3 O ? G HOH . ? A HOH 223 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 222 ? 2_554 96.6 ? 4 O ? G HOH . ? A HOH 216 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 230 ? 2_554 87.9 ? 5 O ? G HOH . ? A HOH 223 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 230 ? 2_554 178.9 ? 6 O ? H HOH . ? B HOH 222 ? 2_554 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 230 ? 2_554 82.4 ? 7 O ? G HOH . ? A HOH 216 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 3_654 176.0 ? 8 O ? G HOH . ? A HOH 223 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 3_654 90.1 ? 9 O ? H HOH . ? B HOH 222 ? 2_554 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 3_654 91.6 ? 10 O ? H HOH . ? B HOH 230 ? 2_554 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 231 ? 3_654 90.5 ? 11 O ? G HOH . ? A HOH 216 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 232 ? 3_654 89.4 ? 12 O ? G HOH . ? A HOH 223 ? 1_555 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 232 ? 3_654 91.4 ? 13 O ? H HOH . ? B HOH 222 ? 2_554 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 232 ? 3_654 171.8 ? 14 O ? H HOH . ? B HOH 230 ? 2_554 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 232 ? 3_654 89.5 ? 15 O ? H HOH . ? B HOH 231 ? 3_654 CO ? C CO . ? A CO 101 ? 1_555 O ? H HOH . ? B HOH 232 ? 3_654 87.0 ? 16 O ? G HOH . ? A HOH 220 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 221 ? 3_644 87.3 ? 17 O ? G HOH . ? A HOH 220 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 222 ? 1_555 90.4 ? 18 O ? G HOH . ? A HOH 221 ? 3_644 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 222 ? 1_555 97.1 ? 19 O ? G HOH . ? A HOH 220 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 90.0 ? 20 O ? G HOH . ? A HOH 221 ? 3_644 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 176.0 ? 21 O ? G HOH . ? A HOH 222 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 226 ? 1_555 85.8 ? 22 O ? G HOH . ? A HOH 220 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 3_644 95.1 ? 23 O ? G HOH . ? A HOH 221 ? 3_644 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 3_644 84.5 ? 24 O ? G HOH . ? A HOH 222 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 3_644 174.3 ? 25 O ? G HOH . ? A HOH 226 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 227 ? 3_644 92.8 ? 26 O ? G HOH . ? A HOH 220 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 3_644 179.7 ? 27 O ? G HOH . ? A HOH 221 ? 3_644 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 3_644 92.4 ? 28 O ? G HOH . ? A HOH 222 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 3_644 89.5 ? 29 O ? G HOH . ? A HOH 226 ? 1_555 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 3_644 90.3 ? 30 O ? G HOH . ? A HOH 227 ? 3_644 CO ? D CO . ? A CO 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 3_644 85.0 ? # _pdbx_entry_details.entry_id 9V89 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CO CO CO N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 MPD C1 C N N 148 MPD C2 C N N 149 MPD O2 O N N 150 MPD CM C N N 151 MPD C3 C N N 152 MPD C4 C N S 153 MPD O4 O N N 154 MPD C5 C N N 155 MPD H11 H N N 156 MPD H12 H N N 157 MPD H13 H N N 158 MPD HO2 H N N 159 MPD HM1 H N N 160 MPD HM2 H N N 161 MPD HM3 H N N 162 MPD H31 H N N 163 MPD H32 H N N 164 MPD H4 H N N 165 MPD HO4 H N N 166 MPD H51 H N N 167 MPD H52 H N N 168 MPD H53 H N N 169 W1H CAI C Y N 170 W1H CAJ C Y N 171 W1H CAK C Y N 172 W1H CAL C Y N 173 W1H CAM C Y N 174 W1H CAN C Y N 175 W1H CAO C Y N 176 W1H CAP C Y N 177 W1H CAQ C Y N 178 W1H CAR C Y N 179 W1H CAS C Y N 180 W1H CAU C Y N 181 W1H CAV C Y N 182 W1H CBB C N N 183 W1H CBC C N N 184 W1H CBD C N N 185 W1H CBE C N N 186 W1H NAA N Y N 187 W1H NAB N N N 188 W1H CBF C N N 189 W1H NBG N N N 190 W1H CBH C N N 191 W1H CBI C Y N 192 W1H OBJ O N N 193 W1H NBK N Y N 194 W1H CBL C Y N 195 W1H CBM C Y N 196 W1H NBN N Y N 197 W1H CBO C Y N 198 W1H CBP C Y N 199 W1H CBQ C Y N 200 W1H CBS C Y N 201 W1H CBY C Y N 202 W1H H1 H N N 203 W1H H2 H N N 204 W1H H3 H N N 205 W1H H4 H N N 206 W1H H5 H N N 207 W1H H6 H N N 208 W1H H7 H N N 209 W1H H8 H N N 210 W1H H9 H N N 211 W1H H10 H N N 212 W1H H11 H N N 213 W1H H12 H N N 214 W1H H13 H N N 215 W1H H14 H N N 216 W1H H15 H N N 217 W1H H16 H N N 218 W1H H17 H N N 219 W1H H18 H N N 220 W1H H19 H N N 221 W1H H20 H N N 222 W1H H21 H N N 223 W1H H22 H N N 224 W1H H23 H N N 225 W1H H24 H N N 226 W1H H25 H N N 227 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 MPD C1 C2 sing N N 152 MPD C1 H11 sing N N 153 MPD C1 H12 sing N N 154 MPD C1 H13 sing N N 155 MPD C2 O2 sing N N 156 MPD C2 CM sing N N 157 MPD C2 C3 sing N N 158 MPD O2 HO2 sing N N 159 MPD CM HM1 sing N N 160 MPD CM HM2 sing N N 161 MPD CM HM3 sing N N 162 MPD C3 C4 sing N N 163 MPD C3 H31 sing N N 164 MPD C3 H32 sing N N 165 MPD C4 O4 sing N N 166 MPD C4 C5 sing N N 167 MPD C4 H4 sing N N 168 MPD O4 HO4 sing N N 169 MPD C5 H51 sing N N 170 MPD C5 H52 sing N N 171 MPD C5 H53 sing N N 172 W1H CAJ CAI doub Y N 173 W1H CAJ CAK sing Y N 174 W1H CAI CAN sing Y N 175 W1H CAK CAL doub Y N 176 W1H CAN CAM doub Y N 177 W1H CAL CAM sing Y N 178 W1H CAL CAQ sing Y N 179 W1H CBE CBF sing N N 180 W1H CBE CBD sing N N 181 W1H CAM NAA sing Y N 182 W1H CBF NBG sing N N 183 W1H CBC CBD sing N N 184 W1H CBC CBB sing N N 185 W1H NAB CAQ sing N N 186 W1H NAB CBB sing N N 187 W1H CAQ CAP doub Y N 188 W1H NAA CAO doub Y N 189 W1H OBJ CBH doub N N 190 W1H NBG CBH sing N N 191 W1H CBH CBI sing N N 192 W1H CAP CAO sing Y N 193 W1H CAP CAR sing Y N 194 W1H CAO CAV sing Y N 195 W1H CAR CAS doub Y N 196 W1H CAV CAU doub Y N 197 W1H CBI CBO sing Y N 198 W1H CBI NBK doub Y N 199 W1H CBO NBN doub Y N 200 W1H NBK CBL sing Y N 201 W1H CAS CAU sing Y N 202 W1H NBN CBM sing Y N 203 W1H CBL CBM sing Y N 204 W1H CBL CBY doub Y N 205 W1H CBM CBP doub Y N 206 W1H CBY CBS sing Y N 207 W1H CBP CBQ sing Y N 208 W1H CBS CBQ doub Y N 209 W1H CAI H1 sing N N 210 W1H CAJ H2 sing N N 211 W1H CAK H3 sing N N 212 W1H CAN H4 sing N N 213 W1H CAR H5 sing N N 214 W1H CAS H6 sing N N 215 W1H CAU H7 sing N N 216 W1H CAV H8 sing N N 217 W1H CBB H9 sing N N 218 W1H CBB H10 sing N N 219 W1H CBC H11 sing N N 220 W1H CBC H12 sing N N 221 W1H CBD H13 sing N N 222 W1H CBD H14 sing N N 223 W1H CBE H15 sing N N 224 W1H CBE H16 sing N N 225 W1H NAB H17 sing N N 226 W1H CBF H18 sing N N 227 W1H CBF H19 sing N N 228 W1H NBG H20 sing N N 229 W1H CBO H21 sing N N 230 W1H CBP H22 sing N N 231 W1H CBQ H23 sing N N 232 W1H CBS H24 sing N N 233 W1H CBY H25 sing N N 234 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9V89 'double helix' 9V89 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 8 1_555 0.305 -0.280 -0.664 4.840 2.223 -0.463 1 A_DC1:DG8_B A 1 ? B 8 ? 19 1 1 A DG 2 1_555 B DC 7 1_555 -0.223 -0.099 -0.120 -14.420 1.583 -0.504 2 A_DG2:DC7_B A 2 ? B 7 ? 19 1 1 A DT 3 1_555 B DA 6 1_555 -0.075 -0.100 0.259 -5.109 -10.175 3.120 3 A_DT3:DA6_B A 3 ? B 6 ? 20 1 1 A DT 4 1_555 B DA 5 1_555 -0.105 -0.130 -0.270 0.145 -16.462 3.875 4 A_DT4:DA5_B A 4 ? B 5 ? 20 1 1 A DA 5 1_555 B DT 4 1_555 0.020 -0.241 -0.323 -1.378 -15.330 6.631 5 A_DA5:DT4_B A 5 ? B 4 ? 20 1 1 A DA 6 1_555 B DT 3 1_555 0.191 -0.119 0.171 3.593 -8.311 1.541 6 A_DA6:DT3_B A 6 ? B 3 ? 20 1 1 A DC 7 1_555 B DG 2 1_555 0.254 -0.142 -0.107 12.703 -2.212 -0.786 7 A_DC7:DG2_B A 7 ? B 2 ? 19 1 1 A DG 8 1_555 B DC 1 1_555 -0.048 -0.219 -0.205 0.745 21.965 -2.128 8 A_DG8:DC1_B A 8 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.373 -0.045 3.160 -4.362 7.328 23.734 -2.195 -0.390 3.030 17.125 10.193 25.199 1 AA_DG2DT3:DA6DC7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DT 3 1_555 B DA 6 1_555 A DT 4 1_555 B DA 5 1_555 -0.319 -0.171 3.059 2.277 4.854 32.183 -1.087 0.935 2.974 8.680 -4.072 32.615 2 AA_DT3DT4:DA5DA6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DT 4 1_555 B DA 5 1_555 A DA 5 1_555 B DT 4 1_555 0.227 1.382 3.517 0.793 12.624 35.937 0.275 -0.232 3.778 19.723 -1.239 38.028 3 AA_DT4DA5:DT4DA5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DA 5 1_555 B DT 4 1_555 A DA 6 1_555 B DT 3 1_555 0.224 -0.151 3.087 -2.955 7.396 31.197 -1.511 -0.898 2.941 13.479 5.385 32.174 4 AA_DA5DA6:DT3DT4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DA 6 1_555 B DT 3 1_555 A DC 7 1_555 B DG 2 1_555 0.522 -0.285 3.129 2.811 1.938 26.228 -1.119 -0.424 3.138 4.248 -6.160 26.446 5 AA_DA6DC7:DG2DT3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DC 7 1_555 B DG 2 1_555 A DG 8 1_555 B DC 1 1_555 2.864 0.960 6.653 14.985 -7.092 22.044 5.961 2.311 6.644 -15.961 -33.722 27.520 6 AA_DC7DG8:DC1DG2_BB A 7 ? B 2 ? A 8 ? B 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Science and Technology (MoST, Taiwan)' Taiwan 109-2628-M-005-001-MY4 1 'Ministry of Science and Technology (MoST, Taiwan)' Taiwan 109-2311-B-005-007-MY3 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'BIOVIA Discovery Studio' # _atom_sites.entry_id 9V89 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.041955 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028614 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020876 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CO N O P # loop_ # loop_ #