HEADER PEPTIDE BINDING PROTEIN 30-MAY-25 9V99 TITLE CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF CADF FROM CAMPYLOBACTER TITLE 2 JEJUNI IN COMPLEX WITH A PEPTIDOGLYCAN PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE BETA-BARREL DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CADF; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: API-DAL-DAL; COMPND 8 CHAIN: I; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: C3H42_04770, C3H48_01715, C3H57_06665; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CADF, CAMPYLOBACTER JEJUNI, PEPTIDOGLYCAN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.B.OH,S.I.YOON REVDAT 1 06-MAY-26 9V99 0 JRNL AUTH H.B.OH,S.I.YOON JRNL TITL CRYSTAL STRUCTURES OF CAMPYLOBACTER JEJUNI CADF REVEAL A JRNL TITL 2 POTENTIAL ROLE FOR THE ARGININE RESIDUE R268 IN JRNL TITL 3 PEPTIDOGLYCAN RECOGNITION AND POCKET FORMATION. JRNL REF SCI REP V. 15 36733 2025 JRNL REFN ESSN 2045-2322 JRNL PMID 41120626 JRNL DOI 10.1038/S41598-025-20604-7 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3900 - 3.4400 0.99 2816 163 0.1842 0.1951 REMARK 3 2 3.4400 - 2.7300 0.99 2790 142 0.1961 0.2135 REMARK 3 3 2.7300 - 2.3900 1.00 2807 152 0.2104 0.2816 REMARK 3 4 2.3900 - 2.1700 1.00 2811 110 0.2016 0.2557 REMARK 3 5 2.1700 - 2.0100 0.99 2758 149 0.2229 0.2563 REMARK 3 6 2.0100 - 1.8900 0.99 2735 170 0.2501 0.2848 REMARK 3 7 1.8900 - 1.8000 0.99 2759 157 0.2971 0.3369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.244 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.818 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1845 REMARK 3 ANGLE : 0.773 2481 REMARK 3 CHIRALITY : 0.054 270 REMARK 3 PLANARITY : 0.005 337 REMARK 3 DIHEDRAL : 27.852 702 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9534 -13.9314 21.0123 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1276 REMARK 3 T33: 0.1724 T12: -0.0160 REMARK 3 T13: 0.0378 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 5.8216 L22: 1.8300 REMARK 3 L33: 4.2575 L12: -0.4194 REMARK 3 L13: 2.0854 L23: 0.6529 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.4191 S13: 0.1009 REMARK 3 S21: -0.1861 S22: -0.0011 S23: -0.1036 REMARK 3 S31: -0.0102 S32: 0.0270 S33: 0.0094 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2784 -9.2309 17.0337 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.1945 REMARK 3 T33: 0.2734 T12: 0.0883 REMARK 3 T13: 0.0507 T23: 0.0770 REMARK 3 L TENSOR REMARK 3 L11: 8.0065 L22: 6.8936 REMARK 3 L33: 5.0249 L12: 6.8674 REMARK 3 L13: 3.9485 L23: 3.8813 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: 0.2837 S13: 0.9861 REMARK 3 S21: -0.5859 S22: -0.1936 S23: 0.3689 REMARK 3 S31: -0.4342 S32: -0.1921 S33: 0.3123 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4308 -20.7832 22.8254 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.0863 REMARK 3 T33: 0.2065 T12: -0.0118 REMARK 3 T13: 0.0225 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 8.0990 L22: 2.0418 REMARK 3 L33: 7.2492 L12: -0.3106 REMARK 3 L13: 6.0656 L23: -0.7378 REMARK 3 S TENSOR REMARK 3 S11: 0.1540 S12: -0.0981 S13: -0.9727 REMARK 3 S21: -0.1277 S22: 0.1994 S23: 0.1879 REMARK 3 S31: 0.1368 S32: -0.3357 S33: -0.3508 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7192 -16.3383 31.2442 REMARK 3 T TENSOR REMARK 3 T11: 0.1233 T22: 0.1343 REMARK 3 T33: 0.1548 T12: -0.0079 REMARK 3 T13: 0.0472 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 7.7682 L22: 6.4213 REMARK 3 L33: 6.3809 L12: -6.0037 REMARK 3 L13: 6.7926 L23: -5.4804 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: -0.2946 S13: -0.0201 REMARK 3 S21: 0.1551 S22: 0.1791 S23: 0.2504 REMARK 3 S31: -0.0079 S32: -0.2255 S33: -0.0947 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8042 -20.5363 24.5964 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1201 REMARK 3 T33: 0.1477 T12: -0.0249 REMARK 3 T13: 0.0241 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.5661 L22: 3.1855 REMARK 3 L33: 1.2066 L12: -2.0068 REMARK 3 L13: 1.6444 L23: -0.1858 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: -0.0767 S13: -0.5610 REMARK 3 S21: -0.0109 S22: -0.0142 S23: 0.3221 REMARK 3 S31: 0.0459 S32: -0.0890 S33: -0.0697 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5156 -19.1993 20.4702 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.0945 REMARK 3 T33: 0.1677 T12: 0.0119 REMARK 3 T13: 0.0332 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 7.2017 L22: 2.3544 REMARK 3 L33: 3.2604 L12: -0.6897 REMARK 3 L13: 2.4520 L23: 1.1229 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: 0.2662 S13: -0.0041 REMARK 3 S21: -0.1506 S22: -0.0213 S23: -0.0304 REMARK 3 S31: -0.0754 S32: -0.0038 S33: 0.0625 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 206 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3686 0.1255 4.7184 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.1507 REMARK 3 T33: 0.3060 T12: -0.0202 REMARK 3 T13: 0.0119 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.9288 L22: 4.5274 REMARK 3 L33: 3.8399 L12: -0.6263 REMARK 3 L13: 1.5080 L23: -2.0297 REMARK 3 S TENSOR REMARK 3 S11: 0.1955 S12: -0.2523 S13: -0.1172 REMARK 3 S21: 0.0474 S22: -0.0420 S23: 0.3249 REMARK 3 S31: 0.1194 S32: -0.0071 S33: -0.1703 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8689 4.6759 8.9865 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.1936 REMARK 3 T33: 0.3092 T12: -0.0906 REMARK 3 T13: -0.0139 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 8.9991 L22: 5.4317 REMARK 3 L33: 3.0066 L12: -6.2756 REMARK 3 L13: 3.5563 L23: -2.7731 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: -0.3246 S13: 0.7871 REMARK 3 S21: 0.6466 S22: -0.0591 S23: -0.3789 REMARK 3 S31: -0.4190 S32: 0.1689 S33: 0.2380 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 241 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2093 -6.5071 2.0702 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1132 REMARK 3 T33: 0.3175 T12: -0.0131 REMARK 3 T13: 0.0130 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 8.2840 L22: 2.6332 REMARK 3 L33: 5.5425 L12: 2.1893 REMARK 3 L13: 5.0021 L23: 1.2602 REMARK 3 S TENSOR REMARK 3 S11: 0.5648 S12: -0.3220 S13: -0.9404 REMARK 3 S21: -0.0298 S22: 0.0227 S23: -0.0645 REMARK 3 S31: 0.2856 S32: -0.0643 S33: -0.5940 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 258 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4763 -1.3774 -5.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.2199 REMARK 3 T33: 0.2061 T12: -0.0289 REMARK 3 T13: 0.0292 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.0123 L22: 2.0148 REMARK 3 L33: 7.9253 L12: 2.0016 REMARK 3 L13: 8.8126 L23: 7.0363 REMARK 3 S TENSOR REMARK 3 S11: -0.2849 S12: 0.6283 S13: 0.0145 REMARK 3 S21: -0.3915 S22: 0.2239 S23: -0.0968 REMARK 3 S31: -0.2706 S32: 0.2894 S33: 0.0490 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 279 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6971 -2.2994 0.4948 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.2284 REMARK 3 T33: 0.4304 T12: -0.0129 REMARK 3 T13: 0.0584 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 3.7993 L22: 0.7342 REMARK 3 L33: 1.7353 L12: 1.5162 REMARK 3 L13: 2.3518 L23: 1.1234 REMARK 3 S TENSOR REMARK 3 S11: 0.2377 S12: 0.3210 S13: -0.8853 REMARK 3 S21: -0.1187 S22: 0.0925 S23: -0.9709 REMARK 3 S31: -0.0505 S32: 0.2568 S33: -0.3127 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 291 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1843 -6.5872 1.3722 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1630 REMARK 3 T33: 0.5071 T12: 0.0037 REMARK 3 T13: 0.0142 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 5.7125 L22: 0.6929 REMARK 3 L33: 3.5678 L12: -0.7123 REMARK 3 L13: 0.7271 L23: -0.7610 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: -0.0699 S13: -0.2154 REMARK 3 S21: 0.1340 S22: 0.0711 S23: 0.7690 REMARK 3 S31: -0.0485 S32: -0.3261 S33: -0.0633 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 311 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4216 -7.3963 6.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.2007 T22: 0.1563 REMARK 3 T33: 0.4458 T12: -0.0355 REMARK 3 T13: -0.0088 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 1.7342 L22: 2.3721 REMARK 3 L33: 2.7767 L12: 0.8354 REMARK 3 L13: -1.2377 L23: -0.4592 REMARK 3 S TENSOR REMARK 3 S11: -0.0672 S12: -0.2767 S13: -0.9560 REMARK 3 S21: 0.3898 S22: -0.1770 S23: -0.1229 REMARK 3 S31: 0.1543 S32: 0.0596 S33: 0.2426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 206 THROUGH 219 OR REMARK 3 (RESID 220 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 221 THROUGH 231 OR (RESID REMARK 3 232 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB OR NAME CG OR NAME CD )) REMARK 3 OR RESID 233 THROUGH 241 OR (RESID 242 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 243 THROUGH 269 REMARK 3 OR (RESID 270 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 271 THROUGH 319)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 206 THROUGH 286 OR REMARK 3 (RESID 287 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 288 REMARK 3 THROUGH 319)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9V99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300060066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20881 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.61300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 202 REMARK 465 SER A 203 REMARK 465 ALA A 204 REMARK 465 LYS A 205 REMARK 465 GLY B 202 REMARK 465 SER B 203 REMARK 465 ALA B 204 REMARK 465 LYS B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 LYS A 263 CD CE NZ REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 LYS B 220 CE NZ REMARK 470 LYS B 232 CE NZ REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 LYS B 263 CD CE NZ REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 LYS B 283 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 API I 403 O - C - N ANGL. DEV. = 11.3 DEGREES REMARK 500 DAL I 404 C - N - CA ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 API B 401 DBREF1 9V99 A 208 319 UNP A0A1E7NJR0_CAMJU DBREF2 9V99 A A0A1E7NJR0 208 319 DBREF1 9V99 B 208 319 UNP A0A1E7NJR0_CAMJU DBREF2 9V99 B A0A1E7NJR0 208 319 DBREF 9V99 I 403 405 PDB 9V99 9V99 403 405 SEQADV 9V99 GLY A 202 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 SER A 203 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 ALA A 204 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 LYS A 205 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 ASP A 206 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 PRO A 207 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 GLY B 202 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 SER B 203 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 ALA B 204 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 LYS B 205 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 ASP B 206 UNP A0A1E7NJR EXPRESSION TAG SEQADV 9V99 PRO B 207 UNP A0A1E7NJR EXPRESSION TAG SEQRES 1 A 118 GLY SER ALA LYS ASP PRO LYS THR ILE SER LEU GLU GLY SEQRES 2 A 118 HIS PHE GLY PHE ASP LYS THR THR ILE ASN PRO THR PHE SEQRES 3 A 118 GLN GLU LYS ILE LYS GLU ILE ALA LYS VAL LEU ASP GLU SEQRES 4 A 118 ASN GLU ARG TYR ASP THR ILE LEU GLU GLY HIS THR ASP SEQRES 5 A 118 ASN ILE GLY SER ARG ALA TYR ASN GLN LYS LEU SER GLU SEQRES 6 A 118 ARG ARG ALA LYS SER VAL ALA ASN GLU LEU GLU LYS TYR SEQRES 7 A 118 GLY VAL GLU LYS SER ARG ILE LYS THR VAL GLY TYR GLY SEQRES 8 A 118 GLN ASP ASN PRO ARG SER SER ASN ASP THR LYS GLU GLY SEQRES 9 A 118 ARG ALA ASP ASN ARG ARG VAL ASP ALA LYS PHE ILE LEU SEQRES 10 A 118 ARG SEQRES 1 B 118 GLY SER ALA LYS ASP PRO LYS THR ILE SER LEU GLU GLY SEQRES 2 B 118 HIS PHE GLY PHE ASP LYS THR THR ILE ASN PRO THR PHE SEQRES 3 B 118 GLN GLU LYS ILE LYS GLU ILE ALA LYS VAL LEU ASP GLU SEQRES 4 B 118 ASN GLU ARG TYR ASP THR ILE LEU GLU GLY HIS THR ASP SEQRES 5 B 118 ASN ILE GLY SER ARG ALA TYR ASN GLN LYS LEU SER GLU SEQRES 6 B 118 ARG ARG ALA LYS SER VAL ALA ASN GLU LEU GLU LYS TYR SEQRES 7 B 118 GLY VAL GLU LYS SER ARG ILE LYS THR VAL GLY TYR GLY SEQRES 8 B 118 GLN ASP ASN PRO ARG SER SER ASN ASP THR LYS GLU GLY SEQRES 9 B 118 ARG ALA ASP ASN ARG ARG VAL ASP ALA LYS PHE ILE LEU SEQRES 10 B 118 ARG SEQRES 1 I 3 API DAL DAL HET API I 403 12 HET DAL I 404 5 HET DAL I 405 6 HET API B 401 5 HETNAM API 2,6-DIAMINOPIMELIC ACID HETNAM DAL D-ALANINE FORMUL 3 API 2(C7 H14 N2 O4) FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 5 HOH *108(H2 O) HELIX 1 AA1 ASP A 206 THR A 209 5 4 HELIX 2 AA2 ASN A 224 ASN A 241 1 18 HELIX 3 AA3 SER A 257 TYR A 279 1 23 HELIX 4 AA4 GLU A 282 SER A 284 5 3 HELIX 5 AA5 THR A 302 ASN A 309 1 8 HELIX 6 AA6 ASP B 206 THR B 209 5 4 HELIX 7 AA7 ASN B 224 ASN B 241 1 18 HELIX 8 AA8 SER B 257 TYR B 279 1 23 HELIX 9 AA9 GLU B 282 SER B 284 5 3 HELIX 10 AB1 THR B 302 ARG B 310 1 9 SHEET 1 AA1 4 SER A 211 HIS A 215 0 SHEET 2 AA1 4 ARG A 311 LEU A 318 -1 O ALA A 314 N LEU A 212 SHEET 3 AA1 4 TYR A 244 HIS A 251 -1 N ILE A 247 O LYS A 315 SHEET 4 AA1 4 ILE A 286 GLY A 290 1 O LYS A 287 N LEU A 248 SHEET 1 AA2 4 SER B 211 HIS B 215 0 SHEET 2 AA2 4 ARG B 311 LEU B 318 -1 O ALA B 314 N LEU B 212 SHEET 3 AA2 4 TYR B 244 HIS B 251 -1 N ASP B 245 O ILE B 317 SHEET 4 AA2 4 ILE B 286 GLY B 290 1 O LYS B 287 N LEU B 248 LINK C API I 403 N DAL I 404 1555 1555 1.43 LINK C DAL I 404 N DAL I 405 1555 1555 1.33 CRYST1 43.855 49.226 55.981 90.00 112.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022802 0.000000 0.009241 0.00000 SCALE2 0.000000 0.020314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019275 0.00000 CONECT 1799 1800 1806 1811 CONECT 1800 1799 1801 1809 CONECT 1801 1800 1802 CONECT 1802 1801 1803 CONECT 1803 1802 1804 CONECT 1804 1803 1805 1810 CONECT 1805 1804 1807 1808 CONECT 1806 1799 CONECT 1807 1805 CONECT 1808 1805 CONECT 1809 1800 CONECT 1810 1804 CONECT 1811 1799 1812 CONECT 1812 1811 1813 1814 CONECT 1813 1812 CONECT 1814 1812 1815 1816 CONECT 1815 1814 CONECT 1816 1814 1817 CONECT 1817 1816 1818 1819 CONECT 1818 1817 CONECT 1819 1817 1820 1821 CONECT 1820 1819 CONECT 1821 1819 CONECT 1823 1824 1827 CONECT 1824 1823 1825 1826 CONECT 1825 1824 CONECT 1826 1824 CONECT 1827 1823 MASTER 468 0 4 10 8 0 0 6 1932 3 28 21 END