data_9VA3 # _entry.id 9VA3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9VA3 pdb_00009va3 10.2210/pdb9va3/pdb WWPDB D_1300060111 ? ? BMRB 36761 ? 10.13018/BMR36761 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-02-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9VA3 _pdbx_database_status.recvd_initial_deposition_date 2025-06-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 36761 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email leizeng@jlu.edu.cn _pdbx_contact_author.name_first Zeng _pdbx_contact_author.name_last Lei _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4236-6735 # _audit_author.name 'Zeng, L.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Dual Targeting of Topoisomerase I and DNA G-quadruplexes Enhances Senescence Response and Chemosensitivity in Colorectal Cancer Cells ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, Y.' 1 ? primary 'Ji, D.' 2 ? primary 'Jia, Y.' 3 ? primary 'Liang, Y.' 4 ? primary 'Wei, E.' 5 ? primary 'Gao, C.' 6 ? primary 'Li, Y.' 7 ? primary 'Zeng, C.' 8 ? primary 'Wang, L.' 9 ? primary 'Wang, C.' 10 ? primary 'Guo, Z.' 11 ? primary 'Zhang, Y.' 12 ? primary 'Zhou, M.-M.' 13 ? primary 'Wu, D.' 14 ? primary 'Zeng, L.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*TP*GP*GP*GP*AP*GP*GP*GP*TP*CP*TP*GP*GP*GP*AP*GP*GP*GP*CP*C)-3') ; 6938.463 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn ;(S)-4,11-diethyl-4-hydroxy-3,14-dioxo-3,4,12,14-tetrahydro-1H-pyrano[3',4':6,7]indolizino[1,2-b]quinolin-9-yl (2-(4-methylpiperazin-1-yl)-2-oxoethyl)carbamate ; 575.612 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DA)(DT)(DG)(DG)(DG)(DA)(DG)(DG)(DG)(DT)(DC)(DT)(DG)(DG)(DG)(DA)(DG)(DG)(DG) (DC)(DC) ; _entity_poly.pdbx_seq_one_letter_code_can AATGGGAGGGTCTGGGAGGGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 ;(S)-4,11-diethyl-4-hydroxy-3,14-dioxo-3,4,12,14-tetrahydro-1H-pyrano[3',4':6,7]indolizino[1,2-b]quinolin-9-yl (2-(4-methylpiperazin-1-yl)-2-oxoethyl)carbamate ; A1EQ9 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DC n 1 13 DT n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DA n 1 18 DG n 1 19 DG n 1 20 DG n 1 21 DC n 1 22 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1EQ9 non-polymer . ;(S)-4,11-diethyl-4-hydroxy-3,14-dioxo-3,4,12,14-tetrahydro-1H-pyrano[3',4':6,7]indolizino[1,2-b]quinolin-9-yl (2-(4-methylpiperazin-1-yl)-2-oxoethyl)carbamate ; ? 'C30 H33 N5 O7' 575.612 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DA 17 17 17 DA DA A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DC 21 21 21 DC DC A . n A 1 22 DC 22 22 22 DC DC A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1EQ9 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1EQ9 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 501 501 K K A . C 2 K 1 502 601 K K A . D 3 A1EQ9 1 503 201 A1EQ9 ZBH A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9VA3 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9VA3 _struct.title 'Solution NMR structures of hTERT DNA G-quadruplexes (G4s) in complex with small molecule ZBH-01' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9VA3 _struct_keywords.text 'G-quadruplexes, Topoisomerase I, ZBH-01, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9VA3 _struct_ref.pdbx_db_accession 9VA3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9VA3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9VA3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 501 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc2 metalc ? ? A DG 5 O6 ? ? ? 1_555 B K . K ? ? A DG 5 A K 501 1_555 ? ? ? ? ? ? ? 2.804 ? ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 502 1_555 ? ? ? ? ? ? ? 2.811 ? ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 C K . K ? ? A DG 6 A K 502 1_555 ? ? ? ? ? ? ? 2.796 ? ? metalc5 metalc ? ? A DG 8 O6 ? ? ? 1_555 B K . K ? ? A DG 8 A K 501 1_555 ? ? ? ? ? ? ? 2.792 ? ? metalc6 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 501 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc7 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 502 1_555 ? ? ? ? ? ? ? 2.806 ? ? metalc8 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 502 1_555 ? ? ? ? ? ? ? 2.808 ? ? metalc9 metalc ? ? A DG 14 O6 ? ? ? 1_555 B K . K ? ? A DG 14 A K 501 1_555 ? ? ? ? ? ? ? 2.803 ? ? metalc10 metalc ? ? A DG 15 O6 ? ? ? 1_555 B K . K ? ? A DG 15 A K 501 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc11 metalc ? ? A DG 15 O6 ? ? ? 1_555 C K . K ? ? A DG 15 A K 502 1_555 ? ? ? ? ? ? ? 2.803 ? ? metalc12 metalc ? ? A DG 16 O6 ? ? ? 1_555 C K . K ? ? A DG 16 A K 502 1_555 ? ? ? ? ? ? ? 2.801 ? ? metalc13 metalc ? ? A DG 18 O6 ? ? ? 1_555 B K . K ? ? A DG 18 A K 501 1_555 ? ? ? ? ? ? ? 2.789 ? ? metalc14 metalc ? ? A DG 19 O6 ? ? ? 1_555 B K . K ? ? A DG 19 A K 501 1_555 ? ? ? ? ? ? ? 2.796 ? ? metalc15 metalc ? ? A DG 19 O6 ? ? ? 1_555 C K . K ? ? A DG 19 A K 502 1_555 ? ? ? ? ? ? ? 2.802 ? ? metalc16 metalc ? ? A DG 20 O6 ? ? ? 1_555 C K . K ? ? A DG 20 A K 502 1_555 ? ? ? ? ? ? ? 2.803 ? ? hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 5 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 5 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 5 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 5 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 6 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 6 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DT 11 O4 ? ? A DG 8 A DT 11 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog14 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 8 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 9 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 10 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 14 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 14 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 76.0 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 60.2 ? 3 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 99.9 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 119.2 ? 5 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 71.0 ? 6 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 77.0 ? 7 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 98.5 ? 8 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 159.6 ? 9 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 61.1 ? 10 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 14 ? A DG 14 ? 1_555 95.7 ? 11 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 165.0 ? 12 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 114.1 ? 13 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 125.2 ? 14 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 75.4 ? 15 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 75.7 ? 16 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 67.3 ? 17 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 123.0 ? 18 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 97.8 ? 19 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 165.9 ? 20 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 70.5 ? 21 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 97.8 ? 22 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 101.1 ? 23 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 71.3 ? 24 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 161.2 ? 25 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 113.9 ? 26 O6 ? A DG 14 ? A DG 14 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 129.1 ? 27 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 73.4 ? 28 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? B K . ? A K 501 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 74.8 ? 29 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 74.2 ? 30 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 70.7 ? 31 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 90.3 ? 32 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 133.2 ? 33 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 75.2 ? 34 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 75.0 ? 35 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 113.6 ? 36 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 159.0 ? 37 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 75.1 ? 38 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 15 ? A DG 15 ? 1_555 86.4 ? 39 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 158.1 ? 40 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 107.2 ? 41 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 130.5 ? 42 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 66.1 ? 43 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 73.2 ? 44 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 71.1 ? 45 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 127.2 ? 46 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 113.4 ? 47 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 154.2 ? 48 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 73.2 ? 49 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 92.5 ? 50 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 90.5 ? 51 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 67.5 ? 52 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 154.5 ? 53 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 109.2 ? 54 O6 ? A DG 15 ? A DG 15 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 129.5 ? 55 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 70.8 ? 56 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? C K . ? A K 502 ? 1_555 O6 ? A DG 20 ? A DG 20 ? 1_555 74.3 ? # _pdbx_entry_details.entry_id 9VA3 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 102.00 104.50 -2.50 0.40 N 2 2 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.91 104.50 -2.59 0.40 N 3 4 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.74 104.50 -2.76 0.40 N 4 5 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.96 104.50 -2.54 0.40 N 5 6 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 102.04 104.50 -2.46 0.40 N 6 7 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.85 104.50 -2.65 0.40 N 7 9 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.68 104.50 -2.82 0.40 N 8 15 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 102.02 104.50 -2.48 0.40 N 9 18 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.74 104.50 -2.76 0.40 N 10 19 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.93 104.50 -2.57 0.40 N 11 20 "O4'" A DC 12 ? ? "C4'" A DC 12 ? ? "C3'" A DC 12 ? ? 101.96 104.50 -2.54 0.40 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 12 _pdbx_validate_planes.auth_comp_id DG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 20 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.057 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 9VA3 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9VA3 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '20 mM potassium phosphate, 70 mM potassium chloride, 90% H2O/10% D2O' '90% H2O/10% D2O' sample-h2o#1 solution ? 2 '20 mM potassium phosphate, 70 mM potassium chloride, 100% D2O' '100% D2O' sample-d2o#2 solution ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'potassium phosphate' 20 ? mM 'natural abundance' 1 'potassium chloride' 70 ? mM 'natural abundance' 2 'potassium phosphate' 20 ? mM 'natural abundance' 2 'potassium chloride' 70 ? mM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 6.5 null ? ? 'Not defined' condition_298_#1 ? pH ? ? K 2 298 atm 1 6.5 null ? ? 'Not defined' condition_288_#2 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 2 '2D 1H-1H NOESY' 1 isotropic 2 2 2 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 2 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 9VA3 'torsion angle dynamics' ? 1 9VA3 'torsion angle dynamics' ? 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement ARIA ? ;Linge, O'Donoghue and Nilges ; 2 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 5 collection TopSpin ? 'Bruker Biospin' 6 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1EQ9 C01 C N N 1 A1EQ9 C03 C Y N 2 A1EQ9 C06 C N N 3 A1EQ9 C07 C N N 4 A1EQ9 C08 C N N 5 A1EQ9 C09 C N N 6 A1EQ9 C12 C N N 7 A1EQ9 C14 C N N 8 A1EQ9 C0P C Y N 9 A1EQ9 C00 C N N 10 A1EQ9 C0A C N N 11 A1EQ9 C0C C N N 12 A1EQ9 C0E C N S 13 A1EQ9 C0G C N N 14 A1EQ9 C0H C N N 15 A1EQ9 C0I C N N 16 A1EQ9 C0K C Y N 17 A1EQ9 C0N C Y N 18 A1EQ9 C0O C Y N 19 A1EQ9 C0Q C Y N 20 A1EQ9 C0S C N N 21 A1EQ9 C0V C N N 22 A1EQ9 C0W C N N 23 A1EQ9 C0Z C N N 24 A1EQ9 N0M N Y N 25 A1EQ9 N0U N N N 26 A1EQ9 N0Y N N N 27 A1EQ9 O0B O N N 28 A1EQ9 O0D O N N 29 A1EQ9 O0F O N N 30 A1EQ9 O0J O N N 31 A1EQ9 O0R O N N 32 A1EQ9 O0T O N N 33 A1EQ9 O0X O N N 34 A1EQ9 C02 C Y N 35 A1EQ9 C04 C N N 36 A1EQ9 N05 N N N 37 A1EQ9 C10 C N N 38 A1EQ9 N11 N N N 39 A1EQ9 C13 C N N 40 A1EQ9 C15 C Y N 41 A1EQ9 C16 C Y N 42 A1EQ9 H1A H N N 43 A1EQ9 H1B H N N 44 A1EQ9 H1E H N N 45 A1EQ9 H1Z H N N 46 A1EQ9 H1Y H N N 47 A1EQ9 H1X H N N 48 A1EQ9 H22 H N N 49 A1EQ9 H23 H N N 50 A1EQ9 H1P H N N 51 A1EQ9 H17 H N N 52 A1EQ9 H19 H N N 53 A1EQ9 H18 H N N 54 A1EQ9 H1G H N N 55 A1EQ9 H1F H N N 56 A1EQ9 H1J H N N 57 A1EQ9 H1I H N N 58 A1EQ9 H1K H N N 59 A1EQ9 H1N H N N 60 A1EQ9 H1M H N N 61 A1EQ9 H1O H N N 62 A1EQ9 H1R H N N 63 A1EQ9 H1S H N N 64 A1EQ9 H1U H N N 65 A1EQ9 H1T H N N 66 A1EQ9 H1Q H N N 67 A1EQ9 H1H H N N 68 A1EQ9 H1C H N N 69 A1EQ9 H1D H N N 70 A1EQ9 H1W H N N 71 A1EQ9 H1V H N N 72 A1EQ9 H21 H N N 73 A1EQ9 H20 H N N 74 A1EQ9 H24 H N N 75 DA OP3 O N N 76 DA P P N N 77 DA OP1 O N N 78 DA OP2 O N N 79 DA "O5'" O N N 80 DA "C5'" C N N 81 DA "C4'" C N R 82 DA "O4'" O N N 83 DA "C3'" C N S 84 DA "O3'" O N N 85 DA "C2'" C N N 86 DA "C1'" C N R 87 DA N9 N Y N 88 DA C8 C Y N 89 DA N7 N Y N 90 DA C5 C Y N 91 DA C6 C Y N 92 DA N6 N N N 93 DA N1 N Y N 94 DA C2 C Y N 95 DA N3 N Y N 96 DA C4 C Y N 97 DA HOP3 H N N 98 DA HOP2 H N N 99 DA "H5'" H N N 100 DA "H5''" H N N 101 DA "H4'" H N N 102 DA "H3'" H N N 103 DA "HO3'" H N N 104 DA "H2'" H N N 105 DA "H2''" H N N 106 DA "H1'" H N N 107 DA H8 H N N 108 DA H61 H N N 109 DA H62 H N N 110 DA H2 H N N 111 DC OP3 O N N 112 DC P P N N 113 DC OP1 O N N 114 DC OP2 O N N 115 DC "O5'" O N N 116 DC "C5'" C N N 117 DC "C4'" C N R 118 DC "O4'" O N N 119 DC "C3'" C N S 120 DC "O3'" O N N 121 DC "C2'" C N N 122 DC "C1'" C N R 123 DC N1 N N N 124 DC C2 C N N 125 DC O2 O N N 126 DC N3 N N N 127 DC C4 C N N 128 DC N4 N N N 129 DC C5 C N N 130 DC C6 C N N 131 DC HOP3 H N N 132 DC HOP2 H N N 133 DC "H5'" H N N 134 DC "H5''" H N N 135 DC "H4'" H N N 136 DC "H3'" H N N 137 DC "HO3'" H N N 138 DC "H2'" H N N 139 DC "H2''" H N N 140 DC "H1'" H N N 141 DC H41 H N N 142 DC H42 H N N 143 DC H5 H N N 144 DC H6 H N N 145 DG OP3 O N N 146 DG P P N N 147 DG OP1 O N N 148 DG OP2 O N N 149 DG "O5'" O N N 150 DG "C5'" C N N 151 DG "C4'" C N R 152 DG "O4'" O N N 153 DG "C3'" C N S 154 DG "O3'" O N N 155 DG "C2'" C N N 156 DG "C1'" C N R 157 DG N9 N Y N 158 DG C8 C Y N 159 DG N7 N Y N 160 DG C5 C Y N 161 DG C6 C N N 162 DG O6 O N N 163 DG N1 N N N 164 DG C2 C N N 165 DG N2 N N N 166 DG N3 N N N 167 DG C4 C Y N 168 DG HOP3 H N N 169 DG HOP2 H N N 170 DG "H5'" H N N 171 DG "H5''" H N N 172 DG "H4'" H N N 173 DG "H3'" H N N 174 DG "HO3'" H N N 175 DG "H2'" H N N 176 DG "H2''" H N N 177 DG "H1'" H N N 178 DG H8 H N N 179 DG H1 H N N 180 DG H21 H N N 181 DG H22 H N N 182 DT OP3 O N N 183 DT P P N N 184 DT OP1 O N N 185 DT OP2 O N N 186 DT "O5'" O N N 187 DT "C5'" C N N 188 DT "C4'" C N R 189 DT "O4'" O N N 190 DT "C3'" C N S 191 DT "O3'" O N N 192 DT "C2'" C N N 193 DT "C1'" C N R 194 DT N1 N N N 195 DT C2 C N N 196 DT O2 O N N 197 DT N3 N N N 198 DT C4 C N N 199 DT O4 O N N 200 DT C5 C N N 201 DT C7 C N N 202 DT C6 C N N 203 DT HOP3 H N N 204 DT HOP2 H N N 205 DT "H5'" H N N 206 DT "H5''" H N N 207 DT "H4'" H N N 208 DT "H3'" H N N 209 DT "HO3'" H N N 210 DT "H2'" H N N 211 DT "H2''" H N N 212 DT "H1'" H N N 213 DT H3 H N N 214 DT H71 H N N 215 DT H72 H N N 216 DT H73 H N N 217 DT H6 H N N 218 K K K N N 219 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EQ9 C0Z C10 sing N N 1 A1EQ9 C0Z N0Y sing N N 2 A1EQ9 O0X C0W doub N N 3 A1EQ9 C10 N11 sing N N 4 A1EQ9 N0Y C0W sing N N 5 A1EQ9 N0Y C14 sing N N 6 A1EQ9 C0W C0V sing N N 7 A1EQ9 C14 C13 sing N N 8 A1EQ9 C00 C01 sing N N 9 A1EQ9 C13 N11 sing N N 10 A1EQ9 N11 C12 sing N N 11 A1EQ9 C0V N0U sing N N 12 A1EQ9 O0R C0Q sing N N 13 A1EQ9 O0R C0S sing N N 14 A1EQ9 C0Q C15 doub Y N 15 A1EQ9 C0Q C0P sing Y N 16 A1EQ9 C15 C16 sing Y N 17 A1EQ9 N0U C0S sing N N 18 A1EQ9 C0P C0O doub Y N 19 A1EQ9 C01 C02 sing N N 20 A1EQ9 C16 C02 doub Y N 21 A1EQ9 C16 C0N sing Y N 22 A1EQ9 C0O C0N sing Y N 23 A1EQ9 C0S O0T doub N N 24 A1EQ9 C02 C03 sing Y N 25 A1EQ9 C0N N0M doub Y N 26 A1EQ9 C03 C0K doub Y N 27 A1EQ9 C03 C04 sing N N 28 A1EQ9 N0M C0K sing Y N 29 A1EQ9 C0K C06 sing N N 30 A1EQ9 C04 N05 sing N N 31 A1EQ9 O0F C0E sing N N 32 A1EQ9 C06 N05 sing N N 33 A1EQ9 C06 C07 doub N N 34 A1EQ9 N05 C0I sing N N 35 A1EQ9 C0H C0G sing N N 36 A1EQ9 O0J C0I doub N N 37 A1EQ9 C07 C08 sing N N 38 A1EQ9 C0I C09 sing N N 39 A1EQ9 C09 C08 doub N N 40 A1EQ9 C09 C0A sing N N 41 A1EQ9 C08 C0E sing N N 42 A1EQ9 C0E C0G sing N N 43 A1EQ9 C0E C0C sing N N 44 A1EQ9 C0A O0B sing N N 45 A1EQ9 O0B C0C sing N N 46 A1EQ9 C0C O0D doub N N 47 A1EQ9 C01 H1A sing N N 48 A1EQ9 C01 H1B sing N N 49 A1EQ9 C07 H1E sing N N 50 A1EQ9 C12 H1Z sing N N 51 A1EQ9 C12 H1Y sing N N 52 A1EQ9 C12 H1X sing N N 53 A1EQ9 C14 H22 sing N N 54 A1EQ9 C14 H23 sing N N 55 A1EQ9 C0P H1P sing N N 56 A1EQ9 C00 H17 sing N N 57 A1EQ9 C00 H19 sing N N 58 A1EQ9 C00 H18 sing N N 59 A1EQ9 C0A H1G sing N N 60 A1EQ9 C0A H1F sing N N 61 A1EQ9 C0G H1J sing N N 62 A1EQ9 C0G H1I sing N N 63 A1EQ9 C0H H1K sing N N 64 A1EQ9 C0H H1N sing N N 65 A1EQ9 C0H H1M sing N N 66 A1EQ9 C0O H1O sing N N 67 A1EQ9 C0V H1R sing N N 68 A1EQ9 C0V H1S sing N N 69 A1EQ9 C0Z H1U sing N N 70 A1EQ9 C0Z H1T sing N N 71 A1EQ9 N0U H1Q sing N N 72 A1EQ9 O0F H1H sing N N 73 A1EQ9 C04 H1C sing N N 74 A1EQ9 C04 H1D sing N N 75 A1EQ9 C10 H1W sing N N 76 A1EQ9 C10 H1V sing N N 77 A1EQ9 C13 H21 sing N N 78 A1EQ9 C13 H20 sing N N 79 A1EQ9 C15 H24 sing N N 80 DA OP3 P sing N N 81 DA OP3 HOP3 sing N N 82 DA P OP1 doub N N 83 DA P OP2 sing N N 84 DA P "O5'" sing N N 85 DA OP2 HOP2 sing N N 86 DA "O5'" "C5'" sing N N 87 DA "C5'" "C4'" sing N N 88 DA "C5'" "H5'" sing N N 89 DA "C5'" "H5''" sing N N 90 DA "C4'" "O4'" sing N N 91 DA "C4'" "C3'" sing N N 92 DA "C4'" "H4'" sing N N 93 DA "O4'" "C1'" sing N N 94 DA "C3'" "O3'" sing N N 95 DA "C3'" "C2'" sing N N 96 DA "C3'" "H3'" sing N N 97 DA "O3'" "HO3'" sing N N 98 DA "C2'" "C1'" sing N N 99 DA "C2'" "H2'" sing N N 100 DA "C2'" "H2''" sing N N 101 DA "C1'" N9 sing N N 102 DA "C1'" "H1'" sing N N 103 DA N9 C8 sing Y N 104 DA N9 C4 sing Y N 105 DA C8 N7 doub Y N 106 DA C8 H8 sing N N 107 DA N7 C5 sing Y N 108 DA C5 C6 sing Y N 109 DA C5 C4 doub Y N 110 DA C6 N6 sing N N 111 DA C6 N1 doub Y N 112 DA N6 H61 sing N N 113 DA N6 H62 sing N N 114 DA N1 C2 sing Y N 115 DA C2 N3 doub Y N 116 DA C2 H2 sing N N 117 DA N3 C4 sing Y N 118 DC OP3 P sing N N 119 DC OP3 HOP3 sing N N 120 DC P OP1 doub N N 121 DC P OP2 sing N N 122 DC P "O5'" sing N N 123 DC OP2 HOP2 sing N N 124 DC "O5'" "C5'" sing N N 125 DC "C5'" "C4'" sing N N 126 DC "C5'" "H5'" sing N N 127 DC "C5'" "H5''" sing N N 128 DC "C4'" "O4'" sing N N 129 DC "C4'" "C3'" sing N N 130 DC "C4'" "H4'" sing N N 131 DC "O4'" "C1'" sing N N 132 DC "C3'" "O3'" sing N N 133 DC "C3'" "C2'" sing N N 134 DC "C3'" "H3'" sing N N 135 DC "O3'" "HO3'" sing N N 136 DC "C2'" "C1'" sing N N 137 DC "C2'" "H2'" sing N N 138 DC "C2'" "H2''" sing N N 139 DC "C1'" N1 sing N N 140 DC "C1'" "H1'" sing N N 141 DC N1 C2 sing N N 142 DC N1 C6 sing N N 143 DC C2 O2 doub N N 144 DC C2 N3 sing N N 145 DC N3 C4 doub N N 146 DC C4 N4 sing N N 147 DC C4 C5 sing N N 148 DC N4 H41 sing N N 149 DC N4 H42 sing N N 150 DC C5 C6 doub N N 151 DC C5 H5 sing N N 152 DC C6 H6 sing N N 153 DG OP3 P sing N N 154 DG OP3 HOP3 sing N N 155 DG P OP1 doub N N 156 DG P OP2 sing N N 157 DG P "O5'" sing N N 158 DG OP2 HOP2 sing N N 159 DG "O5'" "C5'" sing N N 160 DG "C5'" "C4'" sing N N 161 DG "C5'" "H5'" sing N N 162 DG "C5'" "H5''" sing N N 163 DG "C4'" "O4'" sing N N 164 DG "C4'" "C3'" sing N N 165 DG "C4'" "H4'" sing N N 166 DG "O4'" "C1'" sing N N 167 DG "C3'" "O3'" sing N N 168 DG "C3'" "C2'" sing N N 169 DG "C3'" "H3'" sing N N 170 DG "O3'" "HO3'" sing N N 171 DG "C2'" "C1'" sing N N 172 DG "C2'" "H2'" sing N N 173 DG "C2'" "H2''" sing N N 174 DG "C1'" N9 sing N N 175 DG "C1'" "H1'" sing N N 176 DG N9 C8 sing Y N 177 DG N9 C4 sing Y N 178 DG C8 N7 doub Y N 179 DG C8 H8 sing N N 180 DG N7 C5 sing Y N 181 DG C5 C6 sing N N 182 DG C5 C4 doub Y N 183 DG C6 O6 doub N N 184 DG C6 N1 sing N N 185 DG N1 C2 sing N N 186 DG N1 H1 sing N N 187 DG C2 N2 sing N N 188 DG C2 N3 doub N N 189 DG N2 H21 sing N N 190 DG N2 H22 sing N N 191 DG N3 C4 sing N N 192 DT OP3 P sing N N 193 DT OP3 HOP3 sing N N 194 DT P OP1 doub N N 195 DT P OP2 sing N N 196 DT P "O5'" sing N N 197 DT OP2 HOP2 sing N N 198 DT "O5'" "C5'" sing N N 199 DT "C5'" "C4'" sing N N 200 DT "C5'" "H5'" sing N N 201 DT "C5'" "H5''" sing N N 202 DT "C4'" "O4'" sing N N 203 DT "C4'" "C3'" sing N N 204 DT "C4'" "H4'" sing N N 205 DT "O4'" "C1'" sing N N 206 DT "C3'" "O3'" sing N N 207 DT "C3'" "C2'" sing N N 208 DT "C3'" "H3'" sing N N 209 DT "O3'" "HO3'" sing N N 210 DT "C2'" "C1'" sing N N 211 DT "C2'" "H2'" sing N N 212 DT "C2'" "H2''" sing N N 213 DT "C1'" N1 sing N N 214 DT "C1'" "H1'" sing N N 215 DT N1 C2 sing N N 216 DT N1 C6 sing N N 217 DT C2 O2 doub N N 218 DT C2 N3 sing N N 219 DT N3 C4 sing N N 220 DT N3 H3 sing N N 221 DT C4 O4 doub N N 222 DT C4 C5 sing N N 223 DT C5 C7 sing N N 224 DT C5 C6 doub N N 225 DT C7 H71 sing N N 226 DT C7 H72 sing N N 227 DT C7 H73 sing N N 228 DT C6 H6 sing N N 229 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9VA3 'double helix' 9VA3 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 4 1_555 A DG 8 1_555 0.750 3.948 -0.294 -10.171 0.429 -86.921 1 A_DG4:DG8_A A 4 ? A 8 ? 6 3 1 A DG 5 1_555 A DG 9 1_555 1.495 3.691 -0.091 -0.655 -0.445 -89.063 2 A_DG5:DG9_A A 5 ? A 9 ? 6 3 1 A DG 6 1_555 A DG 10 1_555 1.607 3.855 -0.096 -1.224 2.540 -91.914 3 A_DG6:DG10_A A 6 ? A 10 ? 6 3 1 A DG 14 1_555 A DG 18 1_555 1.325 4.008 -0.024 -1.988 -6.778 -90.265 4 A_DG14:DG18_A A 14 ? A 18 ? 6 3 1 A DG 15 1_555 A DG 19 1_555 1.582 3.724 0.102 -11.843 -6.379 -89.933 5 A_DG15:DG19_A A 15 ? A 19 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 4 1_555 A DG 8 1_555 A DG 5 1_555 A DG 9 1_555 -0.068 -0.234 3.584 -9.264 1.309 28.580 -0.747 -1.959 3.424 2.565 18.160 30.042 1 AA_DG4DG5:DG9DG8_AA A 4 ? A 8 ? A 5 ? A 9 ? 1 A DG 14 1_555 A DG 18 1_555 A DG 15 1_555 A DG 19 1_555 -0.650 -0.347 3.185 -0.074 3.264 28.743 -1.395 1.286 3.129 6.549 0.149 28.924 2 AA_DG14DG15:DG19DG18_AA A 14 ? A 18 ? A 15 ? A 19 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE NEO' ? Bruker 800 ? 2 'AVANCE NEO' ? Bruker 600 ? # _atom_sites.entry_id 9VA3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H K N O P # loop_ #