HEADER SIGNALING PROTEIN 04-JUN-25 9VBD TITLE CRYO-EM STRUCTURE OF CARD1 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE HPCA1, COMPND 3 MALTOSE/MALTODEXTRIN-BINDING PERIPLASMIC PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PROTEIN HYDROGEN-PEROXIDE-INDUCED CALCIUM INCREASES 1,MMBP, COMPND 6 MALTODEXTRIN-BINDING PROTEIN,MALTOSE-BINDING PROTEIN,MBP; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA, ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702, 83333; SOURCE 5 GENE: HPCA1, AT5G49760, K2I5, MALE, B4034, JW3994; SOURCE 6 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE, SIGNALING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.FUKUDA,N.ISHIHAMA,A.LAOHAVISIT REVDAT 1 08-APR-26 9VBD 0 JRNL AUTH N.ISHIHAMA,Y.FUKUDA,K.TAKIZAWA,R.HIROYAMA,Y.SHIRANO,K.KANNO, JRNL AUTH 2 E.MISHIRO,H.ITO,M.NISHIMURA,K.J.FUJIMOTO,T.YANAI,T.INOUE, JRNL AUTH 3 K.SHIRASU,A.LAOHAVISIT JRNL TITL A COPPER-MEDIATED, REDOX-BASED HYDROGEN PEROXIDE PERCEPTION JRNL TITL 2 IN PLANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, CRYOSPARC, UCSF REMARK 3 CHIMERA, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.260 REMARK 3 NUMBER OF PARTICLES : 130138 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9VBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300060326. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CARD1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.20 REMARK 245 SAMPLE SUPPORT DETAILS : 20 MA CURRENT REMARK 245 SAMPLE VITRIFICATION DETAILS : 3 MICROLITERS DROPLET, 5 REMARK 245 SECONDS DELAY BEFORE BLOTTING, REMARK 245 3 SECONDS BLOT, 0 SECOND DELAY REMARK 245 BEFORE PLUNGING. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1100 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL CRYO ARM 200 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 24 REMARK 465 THR A 25 REMARK 465 GLY A 547 REMARK 465 SER A 548 REMARK 465 ALA A 549 REMARK 465 MET A 550 REMARK 465 LYS A 551 REMARK 465 ILE A 552 REMARK 465 GLU A 553 REMARK 465 GLU A 554 REMARK 465 GLY A 555 REMARK 465 LYS A 556 REMARK 465 LEU A 557 REMARK 465 VAL A 558 REMARK 465 ILE A 559 REMARK 465 TRP A 560 REMARK 465 ILE A 561 REMARK 465 ASN A 562 REMARK 465 GLY A 563 REMARK 465 ASP A 564 REMARK 465 LYS A 565 REMARK 465 GLY A 566 REMARK 465 TYR A 567 REMARK 465 ASN A 568 REMARK 465 GLY A 569 REMARK 465 LEU A 570 REMARK 465 ALA A 571 REMARK 465 GLU A 572 REMARK 465 VAL A 573 REMARK 465 GLY A 574 REMARK 465 LYS A 575 REMARK 465 LYS A 576 REMARK 465 PHE A 577 REMARK 465 GLU A 578 REMARK 465 LYS A 579 REMARK 465 ASP A 580 REMARK 465 THR A 581 REMARK 465 GLY A 582 REMARK 465 ILE A 583 REMARK 465 LYS A 584 REMARK 465 VAL A 585 REMARK 465 THR A 586 REMARK 465 VAL A 587 REMARK 465 GLU A 588 REMARK 465 HIS A 589 REMARK 465 PRO A 590 REMARK 465 ASP A 591 REMARK 465 LYS A 592 REMARK 465 LEU A 593 REMARK 465 GLU A 594 REMARK 465 GLU A 595 REMARK 465 LYS A 596 REMARK 465 PHE A 597 REMARK 465 PRO A 598 REMARK 465 GLN A 599 REMARK 465 VAL A 600 REMARK 465 ALA A 601 REMARK 465 ALA A 602 REMARK 465 THR A 603 REMARK 465 GLY A 604 REMARK 465 ASP A 605 REMARK 465 GLY A 606 REMARK 465 PRO A 607 REMARK 465 ASP A 608 REMARK 465 ILE A 609 REMARK 465 ILE A 610 REMARK 465 PHE A 611 REMARK 465 TRP A 612 REMARK 465 ALA A 613 REMARK 465 HIS A 614 REMARK 465 ASP A 615 REMARK 465 ARG A 616 REMARK 465 PHE A 617 REMARK 465 GLY A 618 REMARK 465 GLY A 619 REMARK 465 TYR A 620 REMARK 465 ALA A 621 REMARK 465 GLN A 622 REMARK 465 SER A 623 REMARK 465 GLY A 624 REMARK 465 LEU A 625 REMARK 465 LEU A 626 REMARK 465 ALA A 627 REMARK 465 GLU A 628 REMARK 465 ILE A 629 REMARK 465 THR A 630 REMARK 465 PRO A 631 REMARK 465 ASP A 632 REMARK 465 LYS A 633 REMARK 465 ALA A 634 REMARK 465 PHE A 635 REMARK 465 GLN A 636 REMARK 465 ASP A 637 REMARK 465 LYS A 638 REMARK 465 LEU A 639 REMARK 465 TYR A 640 REMARK 465 PRO A 641 REMARK 465 PHE A 642 REMARK 465 THR A 643 REMARK 465 TRP A 644 REMARK 465 ASP A 645 REMARK 465 ALA A 646 REMARK 465 VAL A 647 REMARK 465 ARG A 648 REMARK 465 TYR A 649 REMARK 465 ASN A 650 REMARK 465 GLY A 651 REMARK 465 LYS A 652 REMARK 465 LEU A 653 REMARK 465 ILE A 654 REMARK 465 ALA A 655 REMARK 465 TYR A 656 REMARK 465 PRO A 657 REMARK 465 ILE A 658 REMARK 465 ALA A 659 REMARK 465 VAL A 660 REMARK 465 GLU A 661 REMARK 465 ALA A 662 REMARK 465 LEU A 663 REMARK 465 SER A 664 REMARK 465 LEU A 665 REMARK 465 ILE A 666 REMARK 465 TYR A 667 REMARK 465 ASN A 668 REMARK 465 LYS A 669 REMARK 465 ASP A 670 REMARK 465 LEU A 671 REMARK 465 LEU A 672 REMARK 465 PRO A 673 REMARK 465 ASN A 674 REMARK 465 PRO A 675 REMARK 465 PRO A 676 REMARK 465 LYS A 677 REMARK 465 THR A 678 REMARK 465 TRP A 679 REMARK 465 GLU A 680 REMARK 465 GLU A 681 REMARK 465 ILE A 682 REMARK 465 PRO A 683 REMARK 465 ALA A 684 REMARK 465 LEU A 685 REMARK 465 ASP A 686 REMARK 465 LYS A 687 REMARK 465 GLU A 688 REMARK 465 LEU A 689 REMARK 465 LYS A 690 REMARK 465 ALA A 691 REMARK 465 LYS A 692 REMARK 465 GLY A 693 REMARK 465 LYS A 694 REMARK 465 SER A 695 REMARK 465 ALA A 696 REMARK 465 LEU A 697 REMARK 465 MET A 698 REMARK 465 PHE A 699 REMARK 465 ASN A 700 REMARK 465 LEU A 701 REMARK 465 GLN A 702 REMARK 465 GLU A 703 REMARK 465 PRO A 704 REMARK 465 TYR A 705 REMARK 465 PHE A 706 REMARK 465 THR A 707 REMARK 465 TRP A 708 REMARK 465 PRO A 709 REMARK 465 LEU A 710 REMARK 465 ILE A 711 REMARK 465 ALA A 712 REMARK 465 ALA A 713 REMARK 465 ASP A 714 REMARK 465 GLY A 715 REMARK 465 GLY A 716 REMARK 465 TYR A 717 REMARK 465 ALA A 718 REMARK 465 PHE A 719 REMARK 465 LYS A 720 REMARK 465 TYR A 721 REMARK 465 GLU A 722 REMARK 465 ASN A 723 REMARK 465 GLY A 724 REMARK 465 LYS A 725 REMARK 465 TYR A 726 REMARK 465 ASP A 727 REMARK 465 ILE A 728 REMARK 465 LYS A 729 REMARK 465 ASP A 730 REMARK 465 VAL A 731 REMARK 465 GLY A 732 REMARK 465 VAL A 733 REMARK 465 ASP A 734 REMARK 465 ASN A 735 REMARK 465 ALA A 736 REMARK 465 GLY A 737 REMARK 465 ALA A 738 REMARK 465 LYS A 739 REMARK 465 ALA A 740 REMARK 465 GLY A 741 REMARK 465 LEU A 742 REMARK 465 THR A 743 REMARK 465 PHE A 744 REMARK 465 LEU A 745 REMARK 465 VAL A 746 REMARK 465 ASP A 747 REMARK 465 LEU A 748 REMARK 465 ILE A 749 REMARK 465 LYS A 750 REMARK 465 ASN A 751 REMARK 465 LYS A 752 REMARK 465 HIS A 753 REMARK 465 MET A 754 REMARK 465 ASN A 755 REMARK 465 ALA A 756 REMARK 465 ASP A 757 REMARK 465 THR A 758 REMARK 465 ASP A 759 REMARK 465 TYR A 760 REMARK 465 SER A 761 REMARK 465 ILE A 762 REMARK 465 ALA A 763 REMARK 465 GLU A 764 REMARK 465 ALA A 765 REMARK 465 ALA A 766 REMARK 465 PHE A 767 REMARK 465 ASN A 768 REMARK 465 LYS A 769 REMARK 465 GLY A 770 REMARK 465 GLU A 771 REMARK 465 THR A 772 REMARK 465 ALA A 773 REMARK 465 MET A 774 REMARK 465 THR A 775 REMARK 465 ILE A 776 REMARK 465 ASN A 777 REMARK 465 GLY A 778 REMARK 465 PRO A 779 REMARK 465 TRP A 780 REMARK 465 ALA A 781 REMARK 465 TRP A 782 REMARK 465 SER A 783 REMARK 465 ASN A 784 REMARK 465 ILE A 785 REMARK 465 ASP A 786 REMARK 465 THR A 787 REMARK 465 SER A 788 REMARK 465 LYS A 789 REMARK 465 VAL A 790 REMARK 465 ASN A 791 REMARK 465 TYR A 792 REMARK 465 GLY A 793 REMARK 465 VAL A 794 REMARK 465 THR A 795 REMARK 465 VAL A 796 REMARK 465 LEU A 797 REMARK 465 PRO A 798 REMARK 465 THR A 799 REMARK 465 PHE A 800 REMARK 465 LYS A 801 REMARK 465 GLY A 802 REMARK 465 GLN A 803 REMARK 465 PRO A 804 REMARK 465 SER A 805 REMARK 465 LYS A 806 REMARK 465 PRO A 807 REMARK 465 PHE A 808 REMARK 465 VAL A 809 REMARK 465 GLY A 810 REMARK 465 VAL A 811 REMARK 465 LEU A 812 REMARK 465 SER A 813 REMARK 465 ALA A 814 REMARK 465 GLY A 815 REMARK 465 ILE A 816 REMARK 465 ASN A 817 REMARK 465 ALA A 818 REMARK 465 ALA A 819 REMARK 465 SER A 820 REMARK 465 PRO A 821 REMARK 465 ASN A 822 REMARK 465 LYS A 823 REMARK 465 GLU A 824 REMARK 465 LEU A 825 REMARK 465 ALA A 826 REMARK 465 LYS A 827 REMARK 465 GLU A 828 REMARK 465 PHE A 829 REMARK 465 LEU A 830 REMARK 465 GLU A 831 REMARK 465 ASN A 832 REMARK 465 TYR A 833 REMARK 465 LEU A 834 REMARK 465 LEU A 835 REMARK 465 THR A 836 REMARK 465 ASP A 837 REMARK 465 GLU A 838 REMARK 465 GLY A 839 REMARK 465 LEU A 840 REMARK 465 GLU A 841 REMARK 465 ALA A 842 REMARK 465 VAL A 843 REMARK 465 ASN A 844 REMARK 465 LYS A 845 REMARK 465 ASP A 846 REMARK 465 LYS A 847 REMARK 465 PRO A 848 REMARK 465 LEU A 849 REMARK 465 GLY A 850 REMARK 465 ALA A 851 REMARK 465 VAL A 852 REMARK 465 ALA A 853 REMARK 465 LEU A 854 REMARK 465 LYS A 855 REMARK 465 SER A 856 REMARK 465 TYR A 857 REMARK 465 GLU A 858 REMARK 465 GLU A 859 REMARK 465 GLU A 860 REMARK 465 LEU A 861 REMARK 465 VAL A 862 REMARK 465 LYS A 863 REMARK 465 ASP A 864 REMARK 465 PRO A 865 REMARK 465 ARG A 866 REMARK 465 ILE A 867 REMARK 465 ALA A 868 REMARK 465 ALA A 869 REMARK 465 THR A 870 REMARK 465 MET A 871 REMARK 465 GLU A 872 REMARK 465 ASN A 873 REMARK 465 ALA A 874 REMARK 465 GLN A 875 REMARK 465 LYS A 876 REMARK 465 GLY A 877 REMARK 465 GLU A 878 REMARK 465 ILE A 879 REMARK 465 MET A 880 REMARK 465 PRO A 881 REMARK 465 ASN A 882 REMARK 465 ILE A 883 REMARK 465 PRO A 884 REMARK 465 GLN A 885 REMARK 465 MET A 886 REMARK 465 SER A 887 REMARK 465 ALA A 888 REMARK 465 PHE A 889 REMARK 465 TRP A 890 REMARK 465 TYR A 891 REMARK 465 ALA A 892 REMARK 465 VAL A 893 REMARK 465 ARG A 894 REMARK 465 THR A 895 REMARK 465 ALA A 896 REMARK 465 VAL A 897 REMARK 465 ILE A 898 REMARK 465 ASN A 899 REMARK 465 ALA A 900 REMARK 465 ALA A 901 REMARK 465 SER A 902 REMARK 465 GLY A 903 REMARK 465 ARG A 904 REMARK 465 GLN A 905 REMARK 465 THR A 906 REMARK 465 VAL A 907 REMARK 465 ASP A 908 REMARK 465 GLU A 909 REMARK 465 ALA A 910 REMARK 465 LEU A 911 REMARK 465 LYS A 912 REMARK 465 ASP A 913 REMARK 465 ALA A 914 REMARK 465 GLN A 915 REMARK 465 THR A 916 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 108 OG SER A 133 2.14 REMARK 500 ND2 ASN A 523 O5 NAG B 1 2.17 REMARK 500 OD2 ASP A 95 OG SER A 522 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 56 59.97 34.87 REMARK 500 ASP A 65 -1.43 72.15 REMARK 500 SER A 185 -33.11 -134.18 REMARK 500 GLU A 352 -158.30 65.52 REMARK 500 ASP A 359 78.51 -118.25 REMARK 500 PRO A 402 -175.13 -69.49 REMARK 500 PRO A 426 55.38 -66.90 REMARK 500 PRO A 432 44.55 -76.91 REMARK 500 THR A 433 17.42 -142.27 REMARK 500 SER A 448 86.64 -156.35 REMARK 500 GLN A 524 41.51 70.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 411 THR A 412 137.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1004 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 197 ND1 REMARK 620 2 HIS A 199 NE2 119.8 REMARK 620 3 HIS A 222 ND1 86.5 150.5 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-64920 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF CARD1 ECTODOMAIN DBREF 9VBD A 24 546 UNP Q8GZ99 HPCA1_ARATH 24 546 DBREF 9VBD A 551 916 UNP P0AEX9 MALE_ECOLI 27 392 SEQADV 9VBD GLY A 547 UNP Q8GZ99 LINKER SEQADV 9VBD SER A 548 UNP Q8GZ99 LINKER SEQADV 9VBD ALA A 549 UNP Q8GZ99 LINKER SEQADV 9VBD MET A 550 UNP Q8GZ99 LINKER SEQADV 9VBD VAL A 862 UNP P0AEX9 ALA 338 CONFLICT SEQRES 1 A 893 LEU THR ASN GLY LEU ASP ALA SER ALA LEU ASN ALA LEU SEQRES 2 A 893 LYS SER GLU TRP THR THR PRO PRO ASP GLY TRP GLU GLY SEQRES 3 A 893 SER ASP PRO CYS GLY THR ASN TRP VAL GLY ILE THR CYS SEQRES 4 A 893 GLN ASN ASP ARG VAL VAL SER ILE SER LEU GLY ASN LEU SEQRES 5 A 893 ASP LEU GLU GLY LYS LEU PRO ALA ASP ILE SER PHE LEU SEQRES 6 A 893 SER GLU LEU ARG ILE LEU ASP LEU SER TYR ASN PRO LYS SEQRES 7 A 893 LEU SER GLY PRO LEU PRO PRO ASN ILE GLY ASN LEU GLY SEQRES 8 A 893 LYS LEU ARG ASN LEU ILE LEU VAL GLY CYS SER PHE SER SEQRES 9 A 893 GLY GLN ILE PRO GLU SER ILE GLY THR LEU LYS GLU LEU SEQRES 10 A 893 ILE TYR LEU SER LEU ASN LEU ASN LYS PHE SER GLY THR SEQRES 11 A 893 ILE PRO PRO SER ILE GLY LEU LEU SER LYS LEU TYR TRP SEQRES 12 A 893 PHE ASP ILE ALA ASP ASN GLN ILE GLU GLY GLU LEU PRO SEQRES 13 A 893 VAL SER ASN GLY THR SER ALA PRO GLY LEU ASP MET LEU SEQRES 14 A 893 LEU GLN THR LYS HIS PHE HIS PHE GLY LYS ASN LYS LEU SEQRES 15 A 893 SER GLY ASN ILE PRO LYS GLU LEU PHE SER SER ASN MET SEQRES 16 A 893 SER LEU ILE HIS VAL LEU PHE ASP GLY ASN GLN PHE THR SEQRES 17 A 893 GLY GLU ILE PRO GLU THR LEU SER LEU VAL LYS THR LEU SEQRES 18 A 893 THR VAL LEU ARG LEU ASP ARG ASN LYS LEU ILE GLY ASP SEQRES 19 A 893 ILE PRO SER TYR LEU ASN ASN LEU THR ASN LEU ASN GLU SEQRES 20 A 893 LEU TYR LEU ALA ASN ASN ARG PHE THR GLY THR LEU PRO SEQRES 21 A 893 ASN LEU THR SER LEU THR SER LEU TYR THR LEU ASP VAL SEQRES 22 A 893 SER ASN ASN THR LEU ASP PHE SER PRO ILE PRO SER TRP SEQRES 23 A 893 ILE SER SER LEU PRO SER LEU SER THR LEU ARG MET GLU SEQRES 24 A 893 GLY ILE GLN LEU ASN GLY PRO ILE PRO ILE SER PHE PHE SEQRES 25 A 893 SER PRO PRO GLN LEU GLN THR VAL ILE LEU LYS ARG ASN SEQRES 26 A 893 SER ILE VAL GLU SER LEU ASP PHE GLY THR ASP VAL SER SEQRES 27 A 893 SER GLN LEU GLU PHE VAL ASP LEU GLN TYR ASN GLU ILE SEQRES 28 A 893 THR ASP TYR LYS PRO SER ALA ASN LYS VAL LEU GLN VAL SEQRES 29 A 893 ILE LEU ALA ASN ASN PRO VAL CYS LEU GLU ALA GLY ASN SEQRES 30 A 893 GLY PRO SER TYR CYS SER ALA ILE GLN HIS ASN THR SER SEQRES 31 A 893 PHE SER THR LEU PRO THR ASN CYS SER PRO CYS GLU PRO SEQRES 32 A 893 GLY MET GLU ALA SER PRO THR CYS ARG CYS ALA TYR PRO SEQRES 33 A 893 PHE MET GLY THR LEU TYR PHE ARG SER PRO SER PHE SER SEQRES 34 A 893 GLY LEU PHE ASN SER THR ASN PHE SER ILE LEU GLN LYS SEQRES 35 A 893 ALA ILE ALA ASP PHE PHE LYS LYS PHE ASN TYR PRO VAL SEQRES 36 A 893 ASP SER VAL GLY VAL ARG ASN ILE ARG GLU ASN PRO THR SEQRES 37 A 893 ASP HIS GLN LEU LEU ILE ASP LEU LEU VAL PHE PRO LEU SEQRES 38 A 893 GLY ARG GLU SER PHE ASN GLN THR GLY MET SER LEU VAL SEQRES 39 A 893 GLY PHE ALA PHE SER ASN GLN THR TYR LYS PRO PRO PRO SEQRES 40 A 893 ILE PHE GLY PRO TYR ILE PHE LYS ALA ASP LEU TYR LYS SEQRES 41 A 893 GLN PHE SER GLY SER ALA MET LYS ILE GLU GLU GLY LYS SEQRES 42 A 893 LEU VAL ILE TRP ILE ASN GLY ASP LYS GLY TYR ASN GLY SEQRES 43 A 893 LEU ALA GLU VAL GLY LYS LYS PHE GLU LYS ASP THR GLY SEQRES 44 A 893 ILE LYS VAL THR VAL GLU HIS PRO ASP LYS LEU GLU GLU SEQRES 45 A 893 LYS PHE PRO GLN VAL ALA ALA THR GLY ASP GLY PRO ASP SEQRES 46 A 893 ILE ILE PHE TRP ALA HIS ASP ARG PHE GLY GLY TYR ALA SEQRES 47 A 893 GLN SER GLY LEU LEU ALA GLU ILE THR PRO ASP LYS ALA SEQRES 48 A 893 PHE GLN ASP LYS LEU TYR PRO PHE THR TRP ASP ALA VAL SEQRES 49 A 893 ARG TYR ASN GLY LYS LEU ILE ALA TYR PRO ILE ALA VAL SEQRES 50 A 893 GLU ALA LEU SER LEU ILE TYR ASN LYS ASP LEU LEU PRO SEQRES 51 A 893 ASN PRO PRO LYS THR TRP GLU GLU ILE PRO ALA LEU ASP SEQRES 52 A 893 LYS GLU LEU LYS ALA LYS GLY LYS SER ALA LEU MET PHE SEQRES 53 A 893 ASN LEU GLN GLU PRO TYR PHE THR TRP PRO LEU ILE ALA SEQRES 54 A 893 ALA ASP GLY GLY TYR ALA PHE LYS TYR GLU ASN GLY LYS SEQRES 55 A 893 TYR ASP ILE LYS ASP VAL GLY VAL ASP ASN ALA GLY ALA SEQRES 56 A 893 LYS ALA GLY LEU THR PHE LEU VAL ASP LEU ILE LYS ASN SEQRES 57 A 893 LYS HIS MET ASN ALA ASP THR ASP TYR SER ILE ALA GLU SEQRES 58 A 893 ALA ALA PHE ASN LYS GLY GLU THR ALA MET THR ILE ASN SEQRES 59 A 893 GLY PRO TRP ALA TRP SER ASN ILE ASP THR SER LYS VAL SEQRES 60 A 893 ASN TYR GLY VAL THR VAL LEU PRO THR PHE LYS GLY GLN SEQRES 61 A 893 PRO SER LYS PRO PHE VAL GLY VAL LEU SER ALA GLY ILE SEQRES 62 A 893 ASN ALA ALA SER PRO ASN LYS GLU LEU ALA LYS GLU PHE SEQRES 63 A 893 LEU GLU ASN TYR LEU LEU THR ASP GLU GLY LEU GLU ALA SEQRES 64 A 893 VAL ASN LYS ASP LYS PRO LEU GLY ALA VAL ALA LEU LYS SEQRES 65 A 893 SER TYR GLU GLU GLU LEU VAL LYS ASP PRO ARG ILE ALA SEQRES 66 A 893 ALA THR MET GLU ASN ALA GLN LYS GLY GLU ILE MET PRO SEQRES 67 A 893 ASN ILE PRO GLN MET SER ALA PHE TRP TYR ALA VAL ARG SEQRES 68 A 893 THR ALA VAL ILE ASN ALA ALA SER GLY ARG GLN THR VAL SEQRES 69 A 893 ASP GLU ALA LEU LYS ASP ALA GLN THR HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET BMA E 4 11 HET NAG F 1 14 HET NAG F 2 14 HET NAG A1001 14 HET NAG A1002 14 HET NAG A1003 14 HET CU A1004 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 13(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 10 CU CU 2+ HELIX 1 AA1 ASN A 26 TRP A 40 1 15 HELIX 2 AA2 PRO A 82 LEU A 88 5 7 HELIX 3 AA3 PRO A 108 LEU A 113 5 6 HELIX 4 AA4 PRO A 131 LEU A 137 5 7 HELIX 5 AA5 PRO A 155 LEU A 161 5 7 HELIX 6 AA6 GLY A 188 LEU A 192 5 5 HELIX 7 AA7 PRO A 210 PHE A 214 5 5 HELIX 8 AA8 PRO A 235 VAL A 241 5 7 HELIX 9 AA9 SER A 260 LEU A 265 5 6 HELIX 10 AB1 SER A 308 LEU A 313 5 6 HELIX 11 AB2 ILE A 332 SER A 336 5 5 HELIX 12 AB3 ASN A 392 LEU A 396 5 5 HELIX 13 AB4 PRO A 402 SER A 406 5 5 HELIX 14 AB5 SER A 457 PHE A 474 1 18 HELIX 15 AB6 ASN A 510 ASN A 523 1 14 HELIX 16 AB7 PRO A 529 GLY A 533 5 5 SHEET 1 AA115 ILE A 60 GLN A 63 0 SHEET 2 AA115 ARG A 66 SER A 71 -1 O VAL A 68 N THR A 61 SHEET 3 AA115 ILE A 93 ASP A 95 1 O ASP A 95 N ILE A 70 SHEET 4 AA115 ASN A 118 ILE A 120 1 O ILE A 120 N LEU A 94 SHEET 5 AA115 TYR A 142 SER A 144 1 O SER A 144 N LEU A 119 SHEET 6 AA115 TRP A 166 ASP A 168 1 O TRP A 166 N LEU A 143 SHEET 7 AA115 HIS A 197 HIS A 199 1 O HIS A 197 N PHE A 167 SHEET 8 AA115 HIS A 222 LEU A 224 1 O HIS A 222 N PHE A 198 SHEET 9 AA115 VAL A 246 ARG A 248 1 O VAL A 246 N VAL A 223 SHEET 10 AA115 GLU A 270 TYR A 272 1 O GLU A 270 N LEU A 247 SHEET 11 AA115 THR A 293 ASP A 295 1 O THR A 293 N LEU A 271 SHEET 12 AA115 THR A 318 ARG A 320 1 O THR A 318 N LEU A 294 SHEET 13 AA115 THR A 342 ILE A 344 1 O THR A 342 N LEU A 319 SHEET 14 AA115 PHE A 366 ASP A 368 1 O ASP A 368 N VAL A 343 SHEET 15 AA115 GLN A 386 ILE A 388 1 O ILE A 388 N VAL A 367 SHEET 1 AA2 2 GLU A 175 GLY A 176 0 SHEET 2 AA2 2 LYS A 204 LEU A 205 1 O LYS A 204 N GLY A 176 SHEET 1 AA3 3 THR A 231 GLY A 232 0 SHEET 2 AA3 3 LYS A 253 ASP A 257 1 O ILE A 255 N GLY A 232 SHEET 3 AA3 3 ARG A 277 THR A 279 1 O THR A 279 N GLY A 256 SHEET 1 AA4 3 ASN A 327 GLY A 328 0 SHEET 2 AA4 3 SER A 349 LEU A 354 1 O SER A 349 N GLY A 328 SHEET 3 AA4 3 GLU A 373 TYR A 377 1 O GLU A 373 N ILE A 350 SHEET 1 AA5 4 VAL A 478 GLU A 488 0 SHEET 2 AA5 4 LEU A 495 PRO A 503 -1 O LEU A 496 N ARG A 487 SHEET 3 AA5 4 PHE A 440 PHE A 446 -1 N LEU A 444 O ILE A 497 SHEET 4 AA5 4 TYR A 535 ALA A 539 -1 O LYS A 538 N THR A 443 SSBOND 1 CYS A 53 CYS A 62 1555 1555 2.03 SSBOND 2 CYS A 395 CYS A 405 1555 1555 2.03 SSBOND 3 CYS A 421 CYS A 434 1555 1555 2.03 SSBOND 4 CYS A 424 CYS A 436 1555 1555 2.03 LINK ND2 ASN A 182 C1 NAG A1001 1555 1555 1.44 LINK ND2 ASN A 217 C1 NAG A1002 1555 1555 1.45 LINK ND2 ASN A 264 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 284 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 298 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 411 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN A 456 C1 NAG A1003 1555 1555 1.44 LINK ND2 ASN A 523 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O6 BMA E 3 C1 BMA E 4 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46 LINK ND1 HIS A 197 CU CU A1004 1555 1555 2.33 LINK NE2 HIS A 199 CU CU A1004 1555 1555 2.17 LINK ND1 HIS A 222 CU CU A1004 1555 1555 2.16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 205 270 CONECT 270 205 CONECT 1189 4202 CONECT 1294 4244 CONECT 1318 4244 CONECT 1457 4216 CONECT 1494 4244 CONECT 1829 4096 CONECT 1989 4068 CONECT 2095 4124 CONECT 2852 2921 CONECT 2921 2852 CONECT 2967 4174 CONECT 3040 3127 CONECT 3059 3144 CONECT 3127 3040 CONECT 3144 3059 CONECT 3307 4230 CONECT 3842 4040 CONECT 4040 3842 4041 4051 CONECT 4041 4040 4042 4048 CONECT 4042 4041 4043 4049 CONECT 4043 4042 4044 4050 CONECT 4044 4043 4045 4051 CONECT 4045 4044 4052 CONECT 4046 4047 4048 4053 CONECT 4047 4046 CONECT 4048 4041 4046 CONECT 4049 4042 CONECT 4050 4043 4054 CONECT 4051 4040 4044 CONECT 4052 4045 CONECT 4053 4046 CONECT 4054 4050 4055 4065 CONECT 4055 4054 4056 4062 CONECT 4056 4055 4057 4063 CONECT 4057 4056 4058 4064 CONECT 4058 4057 4059 4065 CONECT 4059 4058 4066 CONECT 4060 4061 4062 4067 CONECT 4061 4060 CONECT 4062 4055 4060 CONECT 4063 4056 CONECT 4064 4057 CONECT 4065 4054 4058 CONECT 4066 4059 CONECT 4067 4060 CONECT 4068 1989 4069 4079 CONECT 4069 4068 4070 4076 CONECT 4070 4069 4071 4077 CONECT 4071 4070 4072 4078 CONECT 4072 4071 4073 4079 CONECT 4073 4072 4080 CONECT 4074 4075 4076 4081 CONECT 4075 4074 CONECT 4076 4069 4074 CONECT 4077 4070 CONECT 4078 4071 4082 CONECT 4079 4068 4072 CONECT 4080 4073 CONECT 4081 4074 CONECT 4082 4078 4083 4093 CONECT 4083 4082 4084 4090 CONECT 4084 4083 4085 4091 CONECT 4085 4084 4086 4092 CONECT 4086 4085 4087 4093 CONECT 4087 4086 4094 CONECT 4088 4089 4090 4095 CONECT 4089 4088 CONECT 4090 4083 4088 CONECT 4091 4084 CONECT 4092 4085 CONECT 4093 4082 4086 CONECT 4094 4087 CONECT 4095 4088 CONECT 4096 1829 4097 4107 CONECT 4097 4096 4098 4104 CONECT 4098 4097 4099 4105 CONECT 4099 4098 4100 4106 CONECT 4100 4099 4101 4107 CONECT 4101 4100 4108 CONECT 4102 4103 4104 4109 CONECT 4103 4102 CONECT 4104 4097 4102 CONECT 4105 4098 CONECT 4106 4099 4110 CONECT 4107 4096 4100 CONECT 4108 4101 CONECT 4109 4102 CONECT 4110 4106 4111 4121 CONECT 4111 4110 4112 4118 CONECT 4112 4111 4113 4119 CONECT 4113 4112 4114 4120 CONECT 4114 4113 4115 4121 CONECT 4115 4114 4122 CONECT 4116 4117 4118 4123 CONECT 4117 4116 CONECT 4118 4111 4116 CONECT 4119 4112 CONECT 4120 4113 CONECT 4121 4110 4114 CONECT 4122 4115 CONECT 4123 4116 CONECT 4124 2095 4125 4135 CONECT 4125 4124 4126 4132 CONECT 4126 4125 4127 4133 CONECT 4127 4126 4128 4134 CONECT 4128 4127 4129 4135 CONECT 4129 4128 4136 CONECT 4130 4131 4132 4137 CONECT 4131 4130 CONECT 4132 4125 4130 CONECT 4133 4126 CONECT 4134 4127 4138 CONECT 4135 4124 4128 CONECT 4136 4129 CONECT 4137 4130 CONECT 4138 4134 4139 4149 CONECT 4139 4138 4140 4146 CONECT 4140 4139 4141 4147 CONECT 4141 4140 4142 4148 CONECT 4142 4141 4143 4149 CONECT 4143 4142 4150 CONECT 4144 4145 4146 4151 CONECT 4145 4144 CONECT 4146 4139 4144 CONECT 4147 4140 CONECT 4148 4141 4152 CONECT 4149 4138 4142 CONECT 4150 4143 CONECT 4151 4144 CONECT 4152 4148 4153 4161 CONECT 4153 4152 4154 4158 CONECT 4154 4153 4155 4159 CONECT 4155 4154 4156 4160 CONECT 4156 4155 4157 4161 CONECT 4157 4156 4162 CONECT 4158 4153 CONECT 4159 4154 CONECT 4160 4155 CONECT 4161 4152 4156 CONECT 4162 4157 4163 CONECT 4163 4162 4164 4172 CONECT 4164 4163 4165 4169 CONECT 4165 4164 4166 4170 CONECT 4166 4165 4167 4171 CONECT 4167 4166 4168 4172 CONECT 4168 4167 4173 CONECT 4169 4164 CONECT 4170 4165 CONECT 4171 4166 CONECT 4172 4163 4167 CONECT 4173 4168 CONECT 4174 2967 4175 4185 CONECT 4175 4174 4176 4182 CONECT 4176 4175 4177 4183 CONECT 4177 4176 4178 4184 CONECT 4178 4177 4179 4185 CONECT 4179 4178 4186 CONECT 4180 4181 4182 4187 CONECT 4181 4180 CONECT 4182 4175 4180 CONECT 4183 4176 CONECT 4184 4177 4188 CONECT 4185 4174 4178 CONECT 4186 4179 CONECT 4187 4180 CONECT 4188 4184 4189 4199 CONECT 4189 4188 4190 4196 CONECT 4190 4189 4191 4197 CONECT 4191 4190 4192 4198 CONECT 4192 4191 4193 4199 CONECT 4193 4192 4200 CONECT 4194 4195 4196 4201 CONECT 4195 4194 CONECT 4196 4189 4194 CONECT 4197 4190 CONECT 4198 4191 CONECT 4199 4188 4192 CONECT 4200 4193 CONECT 4201 4194 CONECT 4202 1189 4203 4213 CONECT 4203 4202 4204 4210 CONECT 4204 4203 4205 4211 CONECT 4205 4204 4206 4212 CONECT 4206 4205 4207 4213 CONECT 4207 4206 4214 CONECT 4208 4209 4210 4215 CONECT 4209 4208 CONECT 4210 4203 4208 CONECT 4211 4204 CONECT 4212 4205 CONECT 4213 4202 4206 CONECT 4214 4207 CONECT 4215 4208 CONECT 4216 1457 4217 4227 CONECT 4217 4216 4218 4224 CONECT 4218 4217 4219 4225 CONECT 4219 4218 4220 4226 CONECT 4220 4219 4221 4227 CONECT 4221 4220 4228 CONECT 4222 4223 4224 4229 CONECT 4223 4222 CONECT 4224 4217 4222 CONECT 4225 4218 CONECT 4226 4219 CONECT 4227 4216 4220 CONECT 4228 4221 CONECT 4229 4222 CONECT 4230 3307 4231 4241 CONECT 4231 4230 4232 4238 CONECT 4232 4231 4233 4239 CONECT 4233 4232 4234 4240 CONECT 4234 4233 4235 4241 CONECT 4235 4234 4242 CONECT 4236 4237 4238 4243 CONECT 4237 4236 CONECT 4238 4231 4236 CONECT 4239 4232 CONECT 4240 4233 CONECT 4241 4230 4234 CONECT 4242 4235 CONECT 4243 4236 CONECT 4244 1294 1318 1494 MASTER 544 0 16 16 27 0 0 6 4243 1 224 69 END