data_9VBH # _entry.id 9VBH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9VBH pdb_00009vbh 10.2210/pdb9vbh/pdb WWPDB D_1300056453 ? ? EMDB EMD-64922 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-12-24 ? 2 'EM metadata' 1 0 2025-12-24 ? 3 'Half map' 1 0 2025-12-24 1 4 'Half map' 1 0 2025-12-24 2 5 Image 1 0 2025-12-24 ? 6 'Primary map' 1 0 2025-12-24 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9VBH _pdbx_database_status.recvd_initial_deposition_date 2025-06-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))' _pdbx_database_related.db_id EMD-64922 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email y-h@mol.f.u-tokyo.ac.jp _pdbx_contact_author.name_first Yoshinori _pdbx_contact_author.name_last Hirano _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9888-1616 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hirano, Y.' 1 0000-0001-9888-1616 'Ezaki, W.' 2 ? 'Ohto, U.' 3 ? 'Shimizu, T.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Mechanistic insights into single-stranded DNA degradation by lysosomal exonucleases PLD3 and PLD4 from structural snapshots.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-66261-2 _citation.pdbx_database_id_PubMed 41381514 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hirano, Y.' 1 0000-0001-9888-1616 primary 'Ezaki, W.' 2 ? primary 'Sato, R.' 3 ? primary 'Ohto, U.' 4 ? primary 'Miyake, K.' 5 ? primary 'Shimizu, T.' 6 0000-0002-0547-8922 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;5'-3' exonuclease PLD3 ; 48467.531 2 3.1.16.1,3.1.4.- H201A/H416A ? 'C-terminal 6 residues are derived from the expression tag.' 2 polymer syn ;DNA (5'-D(*TP*TP*TP*T)-3') ; 14860.490 2 ? ? ? ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 4 ? ? ? ? 4 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 2 ? ? ? ? 5 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '(S,S)-bis(monoacylglycero)phosphate synthase PLD3,HindIII K4L homolog,Hu-K4,Phospholipase D3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EYGDLHLFGPNQRPAPCYDPCEAVLVESIPEGLDFPNASTGNPSTSQAWLGLLAGAHSSLDIASFYWTLTNNDTHTQEPS AQQGEEVLRQLQTLAPKGVNVRIAVSKPSGPQPQADLQALLQSGAQVRMVDMQKLTHGVLATKFWVVDQTHFYLGSANMD WRSLTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRFYDTRYNQETPMEICLNGTPALAYLASAPPPLC PSGRTPDLKALLNVVDNARSFIYVAVMNYLPTLEFSHPHRFWPAIDDGLRRATYERGVKVRLLISCWGHSEPSMRAFLLS LAALRDNHTHSDIQVKLFVVPADEAQARIPYARVNANKYMVTERATYIGTSNWSGNYFTETAGTSLLVTQNGRGGLRSQL EAIFLRDWDSPYSHDLDTSADSVGNACRLLLEVLFQ ; ;EYGDLHLFGPNQRPAPCYDPCEAVLVESIPEGLDFPNASTGNPSTSQAWLGLLAGAHSSLDIASFYWTLTNNDTHTQEPS AQQGEEVLRQLQTLAPKGVNVRIAVSKPSGPQPQADLQALLQSGAQVRMVDMQKLTHGVLATKFWVVDQTHFYLGSANMD WRSLTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRFYDTRYNQETPMEICLNGTPALAYLASAPPPLC PSGRTPDLKALLNVVDNARSFIYVAVMNYLPTLEFSHPHRFWPAIDDGLRRATYERGVKVRLLISCWGHSEPSMRAFLLS LAALRDNHTHSDIQVKLFVVPADEAQARIPYARVNANKYMVTERATYIGTSNWSGNYFTETAGTSLLVTQNGRGGLRSQL EAIFLRDWDSPYSHDLDTSADSVGNACRLLLEVLFQ ; A,C ? 2 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) (DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT) ; TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 TYR n 1 3 GLY n 1 4 ASP n 1 5 LEU n 1 6 HIS n 1 7 LEU n 1 8 PHE n 1 9 GLY n 1 10 PRO n 1 11 ASN n 1 12 GLN n 1 13 ARG n 1 14 PRO n 1 15 ALA n 1 16 PRO n 1 17 CYS n 1 18 TYR n 1 19 ASP n 1 20 PRO n 1 21 CYS n 1 22 GLU n 1 23 ALA n 1 24 VAL n 1 25 LEU n 1 26 VAL n 1 27 GLU n 1 28 SER n 1 29 ILE n 1 30 PRO n 1 31 GLU n 1 32 GLY n 1 33 LEU n 1 34 ASP n 1 35 PHE n 1 36 PRO n 1 37 ASN n 1 38 ALA n 1 39 SER n 1 40 THR n 1 41 GLY n 1 42 ASN n 1 43 PRO n 1 44 SER n 1 45 THR n 1 46 SER n 1 47 GLN n 1 48 ALA n 1 49 TRP n 1 50 LEU n 1 51 GLY n 1 52 LEU n 1 53 LEU n 1 54 ALA n 1 55 GLY n 1 56 ALA n 1 57 HIS n 1 58 SER n 1 59 SER n 1 60 LEU n 1 61 ASP n 1 62 ILE n 1 63 ALA n 1 64 SER n 1 65 PHE n 1 66 TYR n 1 67 TRP n 1 68 THR n 1 69 LEU n 1 70 THR n 1 71 ASN n 1 72 ASN n 1 73 ASP n 1 74 THR n 1 75 HIS n 1 76 THR n 1 77 GLN n 1 78 GLU n 1 79 PRO n 1 80 SER n 1 81 ALA n 1 82 GLN n 1 83 GLN n 1 84 GLY n 1 85 GLU n 1 86 GLU n 1 87 VAL n 1 88 LEU n 1 89 ARG n 1 90 GLN n 1 91 LEU n 1 92 GLN n 1 93 THR n 1 94 LEU n 1 95 ALA n 1 96 PRO n 1 97 LYS n 1 98 GLY n 1 99 VAL n 1 100 ASN n 1 101 VAL n 1 102 ARG n 1 103 ILE n 1 104 ALA n 1 105 VAL n 1 106 SER n 1 107 LYS n 1 108 PRO n 1 109 SER n 1 110 GLY n 1 111 PRO n 1 112 GLN n 1 113 PRO n 1 114 GLN n 1 115 ALA n 1 116 ASP n 1 117 LEU n 1 118 GLN n 1 119 ALA n 1 120 LEU n 1 121 LEU n 1 122 GLN n 1 123 SER n 1 124 GLY n 1 125 ALA n 1 126 GLN n 1 127 VAL n 1 128 ARG n 1 129 MET n 1 130 VAL n 1 131 ASP n 1 132 MET n 1 133 GLN n 1 134 LYS n 1 135 LEU n 1 136 THR n 1 137 HIS n 1 138 GLY n 1 139 VAL n 1 140 LEU n 1 141 ALA n 1 142 THR n 1 143 LYS n 1 144 PHE n 1 145 TRP n 1 146 VAL n 1 147 VAL n 1 148 ASP n 1 149 GLN n 1 150 THR n 1 151 HIS n 1 152 PHE n 1 153 TYR n 1 154 LEU n 1 155 GLY n 1 156 SER n 1 157 ALA n 1 158 ASN n 1 159 MET n 1 160 ASP n 1 161 TRP n 1 162 ARG n 1 163 SER n 1 164 LEU n 1 165 THR n 1 166 GLN n 1 167 VAL n 1 168 LYS n 1 169 GLU n 1 170 LEU n 1 171 GLY n 1 172 VAL n 1 173 VAL n 1 174 MET n 1 175 TYR n 1 176 ASN n 1 177 CYS n 1 178 SER n 1 179 CYS n 1 180 LEU n 1 181 ALA n 1 182 ARG n 1 183 ASP n 1 184 LEU n 1 185 THR n 1 186 LYS n 1 187 ILE n 1 188 PHE n 1 189 GLU n 1 190 ALA n 1 191 TYR n 1 192 TRP n 1 193 PHE n 1 194 LEU n 1 195 GLY n 1 196 GLN n 1 197 ALA n 1 198 GLY n 1 199 SER n 1 200 SER n 1 201 ILE n 1 202 PRO n 1 203 SER n 1 204 THR n 1 205 TRP n 1 206 PRO n 1 207 ARG n 1 208 PHE n 1 209 TYR n 1 210 ASP n 1 211 THR n 1 212 ARG n 1 213 TYR n 1 214 ASN n 1 215 GLN n 1 216 GLU n 1 217 THR n 1 218 PRO n 1 219 MET n 1 220 GLU n 1 221 ILE n 1 222 CYS n 1 223 LEU n 1 224 ASN n 1 225 GLY n 1 226 THR n 1 227 PRO n 1 228 ALA n 1 229 LEU n 1 230 ALA n 1 231 TYR n 1 232 LEU n 1 233 ALA n 1 234 SER n 1 235 ALA n 1 236 PRO n 1 237 PRO n 1 238 PRO n 1 239 LEU n 1 240 CYS n 1 241 PRO n 1 242 SER n 1 243 GLY n 1 244 ARG n 1 245 THR n 1 246 PRO n 1 247 ASP n 1 248 LEU n 1 249 LYS n 1 250 ALA n 1 251 LEU n 1 252 LEU n 1 253 ASN n 1 254 VAL n 1 255 VAL n 1 256 ASP n 1 257 ASN n 1 258 ALA n 1 259 ARG n 1 260 SER n 1 261 PHE n 1 262 ILE n 1 263 TYR n 1 264 VAL n 1 265 ALA n 1 266 VAL n 1 267 MET n 1 268 ASN n 1 269 TYR n 1 270 LEU n 1 271 PRO n 1 272 THR n 1 273 LEU n 1 274 GLU n 1 275 PHE n 1 276 SER n 1 277 HIS n 1 278 PRO n 1 279 HIS n 1 280 ARG n 1 281 PHE n 1 282 TRP n 1 283 PRO n 1 284 ALA n 1 285 ILE n 1 286 ASP n 1 287 ASP n 1 288 GLY n 1 289 LEU n 1 290 ARG n 1 291 ARG n 1 292 ALA n 1 293 THR n 1 294 TYR n 1 295 GLU n 1 296 ARG n 1 297 GLY n 1 298 VAL n 1 299 LYS n 1 300 VAL n 1 301 ARG n 1 302 LEU n 1 303 LEU n 1 304 ILE n 1 305 SER n 1 306 CYS n 1 307 TRP n 1 308 GLY n 1 309 HIS n 1 310 SER n 1 311 GLU n 1 312 PRO n 1 313 SER n 1 314 MET n 1 315 ARG n 1 316 ALA n 1 317 PHE n 1 318 LEU n 1 319 LEU n 1 320 SER n 1 321 LEU n 1 322 ALA n 1 323 ALA n 1 324 LEU n 1 325 ARG n 1 326 ASP n 1 327 ASN n 1 328 HIS n 1 329 THR n 1 330 HIS n 1 331 SER n 1 332 ASP n 1 333 ILE n 1 334 GLN n 1 335 VAL n 1 336 LYS n 1 337 LEU n 1 338 PHE n 1 339 VAL n 1 340 VAL n 1 341 PRO n 1 342 ALA n 1 343 ASP n 1 344 GLU n 1 345 ALA n 1 346 GLN n 1 347 ALA n 1 348 ARG n 1 349 ILE n 1 350 PRO n 1 351 TYR n 1 352 ALA n 1 353 ARG n 1 354 VAL n 1 355 ASN n 1 356 ALA n 1 357 ASN n 1 358 LYS n 1 359 TYR n 1 360 MET n 1 361 VAL n 1 362 THR n 1 363 GLU n 1 364 ARG n 1 365 ALA n 1 366 THR n 1 367 TYR n 1 368 ILE n 1 369 GLY n 1 370 THR n 1 371 SER n 1 372 ASN n 1 373 TRP n 1 374 SER n 1 375 GLY n 1 376 ASN n 1 377 TYR n 1 378 PHE n 1 379 THR n 1 380 GLU n 1 381 THR n 1 382 ALA n 1 383 GLY n 1 384 THR n 1 385 SER n 1 386 LEU n 1 387 LEU n 1 388 VAL n 1 389 THR n 1 390 GLN n 1 391 ASN n 1 392 GLY n 1 393 ARG n 1 394 GLY n 1 395 GLY n 1 396 LEU n 1 397 ARG n 1 398 SER n 1 399 GLN n 1 400 LEU n 1 401 GLU n 1 402 ALA n 1 403 ILE n 1 404 PHE n 1 405 LEU n 1 406 ARG n 1 407 ASP n 1 408 TRP n 1 409 ASP n 1 410 SER n 1 411 PRO n 1 412 TYR n 1 413 SER n 1 414 HIS n 1 415 ASP n 1 416 LEU n 1 417 ASP n 1 418 THR n 1 419 SER n 1 420 ALA n 1 421 ASP n 1 422 SER n 1 423 VAL n 1 424 GLY n 1 425 ASN n 1 426 ALA n 1 427 CYS n 1 428 ARG n 1 429 LEU n 1 430 LEU n 1 431 LEU n 1 432 GLU n 1 433 VAL n 1 434 LEU n 1 435 PHE n 1 436 GLN n 2 1 DT n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DT n 2 11 DT n 2 12 DT n 2 13 DT n 2 14 DT n 2 15 DT n 2 16 DT n 2 17 DT n 2 18 DT n 2 19 DT n 2 20 DT n 2 21 DT n 2 22 DT n 2 23 DT n 2 24 DT n 2 25 DT n 2 26 DT n 2 27 DT n 2 28 DT n 2 29 DT n 2 30 DT n 2 31 DT n 2 32 DT n 2 33 DT n 2 34 DT n 2 35 DT n 2 36 DT n 2 37 DT n 2 38 DT n 2 39 DT n 2 40 DT n 2 41 DT n 2 42 DT n 2 43 DT n 2 44 DT n 2 45 DT n 2 46 DT n 2 47 DT n 2 48 DT n 2 49 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 436 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PLD3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line Expi293F _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 49 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 3 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ? 4 4 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 4 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 6 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}' LINUCS PDB-CARE ? 7 5 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 8 5 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 9 5 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 3 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? 4 5 2 NAG C1 O1 1 NAG O4 HO4 sing ? 5 5 3 BMA C1 O1 2 NAG O4 HO4 sing ? 6 5 4 MAN C1 O1 3 BMA O3 HO3 sing ? 7 5 5 MAN C1 O1 3 BMA O6 HO6 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 61 ? ? ? A . n A 1 2 TYR 2 62 ? ? ? A . n A 1 3 GLY 3 63 ? ? ? A . n A 1 4 ASP 4 64 ? ? ? A . n A 1 5 LEU 5 65 ? ? ? A . n A 1 6 HIS 6 66 ? ? ? A . n A 1 7 LEU 7 67 ? ? ? A . n A 1 8 PHE 8 68 ? ? ? A . n A 1 9 GLY 9 69 ? ? ? A . n A 1 10 PRO 10 70 ? ? ? A . n A 1 11 ASN 11 71 ? ? ? A . n A 1 12 GLN 12 72 ? ? ? A . n A 1 13 ARG 13 73 ? ? ? A . n A 1 14 PRO 14 74 74 PRO PRO A . n A 1 15 ALA 15 75 75 ALA ALA A . n A 1 16 PRO 16 76 76 PRO PRO A . n A 1 17 CYS 17 77 77 CYS CYS A . n A 1 18 TYR 18 78 78 TYR TYR A . n A 1 19 ASP 19 79 79 ASP ASP A . n A 1 20 PRO 20 80 80 PRO PRO A . n A 1 21 CYS 21 81 81 CYS CYS A . n A 1 22 GLU 22 82 82 GLU GLU A . n A 1 23 ALA 23 83 83 ALA ALA A . n A 1 24 VAL 24 84 84 VAL VAL A . n A 1 25 LEU 25 85 85 LEU LEU A . n A 1 26 VAL 26 86 86 VAL VAL A . n A 1 27 GLU 27 87 87 GLU GLU A . n A 1 28 SER 28 88 88 SER SER A . n A 1 29 ILE 29 89 89 ILE ILE A . n A 1 30 PRO 30 90 90 PRO PRO A . n A 1 31 GLU 31 91 91 GLU GLU A . n A 1 32 GLY 32 92 92 GLY GLY A . n A 1 33 LEU 33 93 93 LEU LEU A . n A 1 34 ASP 34 94 94 ASP ASP A . n A 1 35 PHE 35 95 95 PHE PHE A . n A 1 36 PRO 36 96 96 PRO PRO A . n A 1 37 ASN 37 97 97 ASN ASN A . n A 1 38 ALA 38 98 98 ALA ALA A . n A 1 39 SER 39 99 99 SER SER A . n A 1 40 THR 40 100 100 THR THR A . n A 1 41 GLY 41 101 101 GLY GLY A . n A 1 42 ASN 42 102 102 ASN ASN A . n A 1 43 PRO 43 103 103 PRO PRO A . n A 1 44 SER 44 104 104 SER SER A . n A 1 45 THR 45 105 105 THR THR A . n A 1 46 SER 46 106 106 SER SER A . n A 1 47 GLN 47 107 107 GLN GLN A . n A 1 48 ALA 48 108 108 ALA ALA A . n A 1 49 TRP 49 109 109 TRP TRP A . n A 1 50 LEU 50 110 110 LEU LEU A . n A 1 51 GLY 51 111 111 GLY GLY A . n A 1 52 LEU 52 112 112 LEU LEU A . n A 1 53 LEU 53 113 113 LEU LEU A . n A 1 54 ALA 54 114 114 ALA ALA A . n A 1 55 GLY 55 115 115 GLY GLY A . n A 1 56 ALA 56 116 116 ALA ALA A . n A 1 57 HIS 57 117 117 HIS HIS A . n A 1 58 SER 58 118 118 SER SER A . n A 1 59 SER 59 119 119 SER SER A . n A 1 60 LEU 60 120 120 LEU LEU A . n A 1 61 ASP 61 121 121 ASP ASP A . n A 1 62 ILE 62 122 122 ILE ILE A . n A 1 63 ALA 63 123 123 ALA ALA A . n A 1 64 SER 64 124 124 SER SER A . n A 1 65 PHE 65 125 125 PHE PHE A . n A 1 66 TYR 66 126 126 TYR TYR A . n A 1 67 TRP 67 127 127 TRP TRP A . n A 1 68 THR 68 128 128 THR THR A . n A 1 69 LEU 69 129 129 LEU LEU A . n A 1 70 THR 70 130 130 THR THR A . n A 1 71 ASN 71 131 131 ASN ASN A . n A 1 72 ASN 72 132 132 ASN ASN A . n A 1 73 ASP 73 133 133 ASP ASP A . n A 1 74 THR 74 134 134 THR THR A . n A 1 75 HIS 75 135 135 HIS HIS A . n A 1 76 THR 76 136 136 THR THR A . n A 1 77 GLN 77 137 137 GLN GLN A . n A 1 78 GLU 78 138 138 GLU GLU A . n A 1 79 PRO 79 139 139 PRO PRO A . n A 1 80 SER 80 140 140 SER SER A . n A 1 81 ALA 81 141 141 ALA ALA A . n A 1 82 GLN 82 142 142 GLN GLN A . n A 1 83 GLN 83 143 143 GLN GLN A . n A 1 84 GLY 84 144 144 GLY GLY A . n A 1 85 GLU 85 145 145 GLU GLU A . n A 1 86 GLU 86 146 146 GLU GLU A . n A 1 87 VAL 87 147 147 VAL VAL A . n A 1 88 LEU 88 148 148 LEU LEU A . n A 1 89 ARG 89 149 149 ARG ARG A . n A 1 90 GLN 90 150 150 GLN GLN A . n A 1 91 LEU 91 151 151 LEU LEU A . n A 1 92 GLN 92 152 152 GLN GLN A . n A 1 93 THR 93 153 153 THR THR A . n A 1 94 LEU 94 154 154 LEU LEU A . n A 1 95 ALA 95 155 155 ALA ALA A . n A 1 96 PRO 96 156 156 PRO PRO A . n A 1 97 LYS 97 157 157 LYS LYS A . n A 1 98 GLY 98 158 158 GLY GLY A . n A 1 99 VAL 99 159 159 VAL VAL A . n A 1 100 ASN 100 160 160 ASN ASN A . n A 1 101 VAL 101 161 161 VAL VAL A . n A 1 102 ARG 102 162 162 ARG ARG A . n A 1 103 ILE 103 163 163 ILE ILE A . n A 1 104 ALA 104 164 164 ALA ALA A . n A 1 105 VAL 105 165 165 VAL VAL A . n A 1 106 SER 106 166 166 SER SER A . n A 1 107 LYS 107 167 167 LYS LYS A . n A 1 108 PRO 108 168 168 PRO PRO A . n A 1 109 SER 109 169 169 SER SER A . n A 1 110 GLY 110 170 170 GLY GLY A . n A 1 111 PRO 111 171 171 PRO PRO A . n A 1 112 GLN 112 172 172 GLN GLN A . n A 1 113 PRO 113 173 173 PRO PRO A . n A 1 114 GLN 114 174 174 GLN GLN A . n A 1 115 ALA 115 175 175 ALA ALA A . n A 1 116 ASP 116 176 176 ASP ASP A . n A 1 117 LEU 117 177 177 LEU LEU A . n A 1 118 GLN 118 178 178 GLN GLN A . n A 1 119 ALA 119 179 179 ALA ALA A . n A 1 120 LEU 120 180 180 LEU LEU A . n A 1 121 LEU 121 181 181 LEU LEU A . n A 1 122 GLN 122 182 182 GLN GLN A . n A 1 123 SER 123 183 183 SER SER A . n A 1 124 GLY 124 184 184 GLY GLY A . n A 1 125 ALA 125 185 185 ALA ALA A . n A 1 126 GLN 126 186 186 GLN GLN A . n A 1 127 VAL 127 187 187 VAL VAL A . n A 1 128 ARG 128 188 188 ARG ARG A . n A 1 129 MET 129 189 189 MET MET A . n A 1 130 VAL 130 190 190 VAL VAL A . n A 1 131 ASP 131 191 191 ASP ASP A . n A 1 132 MET 132 192 192 MET MET A . n A 1 133 GLN 133 193 193 GLN GLN A . n A 1 134 LYS 134 194 194 LYS LYS A . n A 1 135 LEU 135 195 195 LEU LEU A . n A 1 136 THR 136 196 196 THR THR A . n A 1 137 HIS 137 197 197 HIS HIS A . n A 1 138 GLY 138 198 198 GLY GLY A . n A 1 139 VAL 139 199 199 VAL VAL A . n A 1 140 LEU 140 200 200 LEU LEU A . n A 1 141 ALA 141 201 201 ALA ALA A . n A 1 142 THR 142 202 202 THR THR A . n A 1 143 LYS 143 203 203 LYS LYS A . n A 1 144 PHE 144 204 204 PHE PHE A . n A 1 145 TRP 145 205 205 TRP TRP A . n A 1 146 VAL 146 206 206 VAL VAL A . n A 1 147 VAL 147 207 207 VAL VAL A . n A 1 148 ASP 148 208 208 ASP ASP A . n A 1 149 GLN 149 209 209 GLN GLN A . n A 1 150 THR 150 210 210 THR THR A . n A 1 151 HIS 151 211 211 HIS HIS A . n A 1 152 PHE 152 212 212 PHE PHE A . n A 1 153 TYR 153 213 213 TYR TYR A . n A 1 154 LEU 154 214 214 LEU LEU A . n A 1 155 GLY 155 215 215 GLY GLY A . n A 1 156 SER 156 216 216 SER SER A . n A 1 157 ALA 157 217 217 ALA ALA A . n A 1 158 ASN 158 218 218 ASN ASN A . n A 1 159 MET 159 219 219 MET MET A . n A 1 160 ASP 160 220 220 ASP ASP A . n A 1 161 TRP 161 221 221 TRP TRP A . n A 1 162 ARG 162 222 222 ARG ARG A . n A 1 163 SER 163 223 223 SER SER A . n A 1 164 LEU 164 224 224 LEU LEU A . n A 1 165 THR 165 225 225 THR THR A . n A 1 166 GLN 166 226 226 GLN GLN A . n A 1 167 VAL 167 227 227 VAL VAL A . n A 1 168 LYS 168 228 228 LYS LYS A . n A 1 169 GLU 169 229 229 GLU GLU A . n A 1 170 LEU 170 230 230 LEU LEU A . n A 1 171 GLY 171 231 231 GLY GLY A . n A 1 172 VAL 172 232 232 VAL VAL A . n A 1 173 VAL 173 233 233 VAL VAL A . n A 1 174 MET 174 234 234 MET MET A . n A 1 175 TYR 175 235 235 TYR TYR A . n A 1 176 ASN 176 236 236 ASN ASN A . n A 1 177 CYS 177 237 237 CYS CYS A . n A 1 178 SER 178 238 238 SER SER A . n A 1 179 CYS 179 239 239 CYS CYS A . n A 1 180 LEU 180 240 240 LEU LEU A . n A 1 181 ALA 181 241 241 ALA ALA A . n A 1 182 ARG 182 242 242 ARG ARG A . n A 1 183 ASP 183 243 243 ASP ASP A . n A 1 184 LEU 184 244 244 LEU LEU A . n A 1 185 THR 185 245 245 THR THR A . n A 1 186 LYS 186 246 246 LYS LYS A . n A 1 187 ILE 187 247 247 ILE ILE A . n A 1 188 PHE 188 248 248 PHE PHE A . n A 1 189 GLU 189 249 249 GLU GLU A . n A 1 190 ALA 190 250 250 ALA ALA A . n A 1 191 TYR 191 251 251 TYR TYR A . n A 1 192 TRP 192 252 252 TRP TRP A . n A 1 193 PHE 193 253 253 PHE PHE A . n A 1 194 LEU 194 254 254 LEU LEU A . n A 1 195 GLY 195 255 255 GLY GLY A . n A 1 196 GLN 196 256 256 GLN GLN A . n A 1 197 ALA 197 257 257 ALA ALA A . n A 1 198 GLY 198 258 258 GLY GLY A . n A 1 199 SER 199 259 259 SER SER A . n A 1 200 SER 200 260 260 SER SER A . n A 1 201 ILE 201 261 261 ILE ILE A . n A 1 202 PRO 202 262 262 PRO PRO A . n A 1 203 SER 203 263 263 SER SER A . n A 1 204 THR 204 264 264 THR THR A . n A 1 205 TRP 205 265 265 TRP TRP A . n A 1 206 PRO 206 266 266 PRO PRO A . n A 1 207 ARG 207 267 267 ARG ARG A . n A 1 208 PHE 208 268 268 PHE PHE A . n A 1 209 TYR 209 269 269 TYR TYR A . n A 1 210 ASP 210 270 270 ASP ASP A . n A 1 211 THR 211 271 271 THR THR A . n A 1 212 ARG 212 272 272 ARG ARG A . n A 1 213 TYR 213 273 273 TYR TYR A . n A 1 214 ASN 214 274 274 ASN ASN A . n A 1 215 GLN 215 275 275 GLN GLN A . n A 1 216 GLU 216 276 276 GLU GLU A . n A 1 217 THR 217 277 277 THR THR A . n A 1 218 PRO 218 278 278 PRO PRO A . n A 1 219 MET 219 279 279 MET MET A . n A 1 220 GLU 220 280 280 GLU GLU A . n A 1 221 ILE 221 281 281 ILE ILE A . n A 1 222 CYS 222 282 282 CYS CYS A . n A 1 223 LEU 223 283 283 LEU LEU A . n A 1 224 ASN 224 284 284 ASN ASN A . n A 1 225 GLY 225 285 285 GLY GLY A . n A 1 226 THR 226 286 286 THR THR A . n A 1 227 PRO 227 287 287 PRO PRO A . n A 1 228 ALA 228 288 288 ALA ALA A . n A 1 229 LEU 229 289 289 LEU LEU A . n A 1 230 ALA 230 290 290 ALA ALA A . n A 1 231 TYR 231 291 291 TYR TYR A . n A 1 232 LEU 232 292 292 LEU LEU A . n A 1 233 ALA 233 293 293 ALA ALA A . n A 1 234 SER 234 294 294 SER SER A . n A 1 235 ALA 235 295 295 ALA ALA A . n A 1 236 PRO 236 296 296 PRO PRO A . n A 1 237 PRO 237 297 297 PRO PRO A . n A 1 238 PRO 238 298 298 PRO PRO A . n A 1 239 LEU 239 299 299 LEU LEU A . n A 1 240 CYS 240 300 300 CYS CYS A . n A 1 241 PRO 241 301 301 PRO PRO A . n A 1 242 SER 242 302 302 SER SER A . n A 1 243 GLY 243 303 303 GLY GLY A . n A 1 244 ARG 244 304 304 ARG ARG A . n A 1 245 THR 245 305 305 THR THR A . n A 1 246 PRO 246 306 306 PRO PRO A . n A 1 247 ASP 247 307 307 ASP ASP A . n A 1 248 LEU 248 308 308 LEU LEU A . n A 1 249 LYS 249 309 309 LYS LYS A . n A 1 250 ALA 250 310 310 ALA ALA A . n A 1 251 LEU 251 311 311 LEU LEU A . n A 1 252 LEU 252 312 312 LEU LEU A . n A 1 253 ASN 253 313 313 ASN ASN A . n A 1 254 VAL 254 314 314 VAL VAL A . n A 1 255 VAL 255 315 315 VAL VAL A . n A 1 256 ASP 256 316 316 ASP ASP A . n A 1 257 ASN 257 317 317 ASN ASN A . n A 1 258 ALA 258 318 318 ALA ALA A . n A 1 259 ARG 259 319 319 ARG ARG A . n A 1 260 SER 260 320 320 SER SER A . n A 1 261 PHE 261 321 321 PHE PHE A . n A 1 262 ILE 262 322 322 ILE ILE A . n A 1 263 TYR 263 323 323 TYR TYR A . n A 1 264 VAL 264 324 324 VAL VAL A . n A 1 265 ALA 265 325 325 ALA ALA A . n A 1 266 VAL 266 326 326 VAL VAL A . n A 1 267 MET 267 327 327 MET MET A . n A 1 268 ASN 268 328 328 ASN ASN A . n A 1 269 TYR 269 329 329 TYR TYR A . n A 1 270 LEU 270 330 330 LEU LEU A . n A 1 271 PRO 271 331 331 PRO PRO A . n A 1 272 THR 272 332 332 THR THR A . n A 1 273 LEU 273 333 333 LEU LEU A . n A 1 274 GLU 274 334 334 GLU GLU A . n A 1 275 PHE 275 335 335 PHE PHE A . n A 1 276 SER 276 336 336 SER ALA A . n A 1 277 HIS 277 337 337 HIS HIS A . n A 1 278 PRO 278 338 338 PRO PRO A . n A 1 279 HIS 279 339 339 HIS HIS A . n A 1 280 ARG 280 340 340 ARG ARG A . n A 1 281 PHE 281 341 341 PHE PHE A . n A 1 282 TRP 282 342 342 TRP TRP A . n A 1 283 PRO 283 343 343 PRO PRO A . n A 1 284 ALA 284 344 344 ALA ALA A . n A 1 285 ILE 285 345 345 ILE ILE A . n A 1 286 ASP 286 346 346 ASP ASP A . n A 1 287 ASP 287 347 347 ASP ASP A . n A 1 288 GLY 288 348 348 GLY GLY A . n A 1 289 LEU 289 349 349 LEU LEU A . n A 1 290 ARG 290 350 350 ARG ARG A . n A 1 291 ARG 291 351 351 ARG ARG A . n A 1 292 ALA 292 352 352 ALA ALA A . n A 1 293 THR 293 353 353 THR THR A . n A 1 294 TYR 294 354 354 TYR TYR A . n A 1 295 GLU 295 355 355 GLU GLU A . n A 1 296 ARG 296 356 356 ARG ARG A . n A 1 297 GLY 297 357 357 GLY GLY A . n A 1 298 VAL 298 358 358 VAL VAL A . n A 1 299 LYS 299 359 359 LYS LYS A . n A 1 300 VAL 300 360 360 VAL VAL A . n A 1 301 ARG 301 361 361 ARG ARG A . n A 1 302 LEU 302 362 362 LEU LEU A . n A 1 303 LEU 303 363 363 LEU LEU A . n A 1 304 ILE 304 364 364 ILE ILE A . n A 1 305 SER 305 365 365 SER SER A . n A 1 306 CYS 306 366 366 CYS CYS A . n A 1 307 TRP 307 367 367 TRP TRP A . n A 1 308 GLY 308 368 368 GLY GLY A . n A 1 309 HIS 309 369 369 HIS HIS A . n A 1 310 SER 310 370 370 SER SER A . n A 1 311 GLU 311 371 371 GLU GLU A . n A 1 312 PRO 312 372 372 PRO PRO A . n A 1 313 SER 313 373 373 SER SER A . n A 1 314 MET 314 374 374 MET MET A . n A 1 315 ARG 315 375 375 ARG ARG A . n A 1 316 ALA 316 376 376 ALA ALA A . n A 1 317 PHE 317 377 377 PHE PHE A . n A 1 318 LEU 318 378 378 LEU LEU A . n A 1 319 LEU 319 379 379 LEU LEU A . n A 1 320 SER 320 380 380 SER SER A . n A 1 321 LEU 321 381 381 LEU LEU A . n A 1 322 ALA 322 382 382 ALA ALA A . n A 1 323 ALA 323 383 383 ALA ALA A . n A 1 324 LEU 324 384 384 LEU LEU A . n A 1 325 ARG 325 385 385 ARG ARG A . n A 1 326 ASP 326 386 386 ASP ASP A . n A 1 327 ASN 327 387 387 ASN ASN A . n A 1 328 HIS 328 388 388 HIS HIS A . n A 1 329 THR 329 389 389 THR THR A . n A 1 330 HIS 330 390 390 HIS HIS A . n A 1 331 SER 331 391 391 SER SER A . n A 1 332 ASP 332 392 392 ASP ASP A . n A 1 333 ILE 333 393 393 ILE ILE A . n A 1 334 GLN 334 394 394 GLN GLN A . n A 1 335 VAL 335 395 395 VAL VAL A . n A 1 336 LYS 336 396 396 LYS LYS A . n A 1 337 LEU 337 397 397 LEU LEU A . n A 1 338 PHE 338 398 398 PHE PHE A . n A 1 339 VAL 339 399 399 VAL VAL A . n A 1 340 VAL 340 400 400 VAL VAL A . n A 1 341 PRO 341 401 401 PRO PRO A . n A 1 342 ALA 342 402 402 ALA ALA A . n A 1 343 ASP 343 403 403 ASP ASP A . n A 1 344 GLU 344 404 404 GLU GLU A . n A 1 345 ALA 345 405 405 ALA ALA A . n A 1 346 GLN 346 406 406 GLN GLN A . n A 1 347 ALA 347 407 407 ALA ALA A . n A 1 348 ARG 348 408 408 ARG ARG A . n A 1 349 ILE 349 409 409 ILE ILE A . n A 1 350 PRO 350 410 410 PRO PRO A . n A 1 351 TYR 351 411 411 TYR TYR A . n A 1 352 ALA 352 412 412 ALA ALA A . n A 1 353 ARG 353 413 413 ARG ARG A . n A 1 354 VAL 354 414 414 VAL VAL A . n A 1 355 ASN 355 415 415 ASN ASN A . n A 1 356 ALA 356 416 416 ALA ALA A . n A 1 357 ASN 357 417 417 ASN ASN A . n A 1 358 LYS 358 418 418 LYS LYS A . n A 1 359 TYR 359 419 419 TYR TYR A . n A 1 360 MET 360 420 420 MET MET A . n A 1 361 VAL 361 421 421 VAL VAL A . n A 1 362 THR 362 422 422 THR THR A . n A 1 363 GLU 363 423 423 GLU GLU A . n A 1 364 ARG 364 424 424 ARG ARG A . n A 1 365 ALA 365 425 425 ALA ALA A . n A 1 366 THR 366 426 426 THR THR A . n A 1 367 TYR 367 427 427 TYR TYR A . n A 1 368 ILE 368 428 428 ILE ILE A . n A 1 369 GLY 369 429 429 GLY GLY A . n A 1 370 THR 370 430 430 THR THR A . n A 1 371 SER 371 431 431 SER SER A . n A 1 372 ASN 372 432 432 ASN ASN A . n A 1 373 TRP 373 433 433 TRP TRP A . n A 1 374 SER 374 434 434 SER SER A . n A 1 375 GLY 375 435 435 GLY GLY A . n A 1 376 ASN 376 436 436 ASN ASN A . n A 1 377 TYR 377 437 437 TYR TYR A . n A 1 378 PHE 378 438 438 PHE PHE A . n A 1 379 THR 379 439 439 THR THR A . n A 1 380 GLU 380 440 440 GLU GLU A . n A 1 381 THR 381 441 441 THR THR A . n A 1 382 ALA 382 442 442 ALA ALA A . n A 1 383 GLY 383 443 443 GLY GLY A . n A 1 384 THR 384 444 444 THR THR A . n A 1 385 SER 385 445 445 SER SER A . n A 1 386 LEU 386 446 446 LEU LEU A . n A 1 387 LEU 387 447 447 LEU LEU A . n A 1 388 VAL 388 448 448 VAL VAL A . n A 1 389 THR 389 449 449 THR THR A . n A 1 390 GLN 390 450 450 GLN GLN A . n A 1 391 ASN 391 451 451 ASN ASN A . n A 1 392 GLY 392 452 452 GLY GLY A . n A 1 393 ARG 393 453 453 ARG ARG A . n A 1 394 GLY 394 454 454 GLY GLY A . n A 1 395 GLY 395 455 455 GLY GLY A . n A 1 396 LEU 396 456 456 LEU LEU A . n A 1 397 ARG 397 457 457 ARG ARG A . n A 1 398 SER 398 458 458 SER SER A . n A 1 399 GLN 399 459 459 GLN GLN A . n A 1 400 LEU 400 460 460 LEU LEU A . n A 1 401 GLU 401 461 461 GLU GLU A . n A 1 402 ALA 402 462 462 ALA ALA A . n A 1 403 ILE 403 463 463 ILE ILE A . n A 1 404 PHE 404 464 464 PHE PHE A . n A 1 405 LEU 405 465 465 LEU LEU A . n A 1 406 ARG 406 466 466 ARG ARG A . n A 1 407 ASP 407 467 467 ASP ASP A . n A 1 408 TRP 408 468 468 TRP TRP A . n A 1 409 ASP 409 469 469 ASP ASP A . n A 1 410 SER 410 470 470 SER SER A . n A 1 411 PRO 411 471 471 PRO PRO A . n A 1 412 TYR 412 472 472 TYR TYR A . n A 1 413 SER 413 473 473 SER SER A . n A 1 414 HIS 414 474 474 HIS HIS A . n A 1 415 ASP 415 475 475 ASP ASP A . n A 1 416 LEU 416 476 476 LEU LEU A . n A 1 417 ASP 417 477 477 ASP ASP A . n A 1 418 THR 418 478 478 THR THR A . n A 1 419 SER 419 479 479 SER SER A . n A 1 420 ALA 420 480 480 ALA ALA A . n A 1 421 ASP 421 481 481 ASP ASP A . n A 1 422 SER 422 482 482 SER SER A . n A 1 423 VAL 423 483 483 VAL VAL A . n A 1 424 GLY 424 484 484 GLY GLY A . n A 1 425 ASN 425 485 485 ASN ASN A . n A 1 426 ALA 426 486 486 ALA ALA A . n A 1 427 CYS 427 487 487 CYS CYS A . n A 1 428 ARG 428 488 488 ARG ARG A . n A 1 429 LEU 429 489 489 LEU LEU A . n A 1 430 LEU 430 490 490 LEU LEU A . n A 1 431 LEU 431 491 491 LEU LEU A . n A 1 432 GLU 432 492 492 GLU GLU A . n A 1 433 VAL 433 493 493 VAL VAL A . n A 1 434 LEU 434 494 ? ? ? A . n A 1 435 PHE 435 495 ? ? ? A . n A 1 436 GLN 436 496 ? ? ? A . n B 2 1 DT 1 0 0 DT DT B . n B 2 2 DT 2 1 1 DT DT B . n B 2 3 DT 3 2 2 DT DT B . n B 2 4 DT 4 3 3 DT DT B . n B 2 5 DT 5 4 ? ? ? B . n B 2 6 DT 6 5 ? ? ? B . n B 2 7 DT 7 6 ? ? ? B . n B 2 8 DT 8 7 ? ? ? B . n B 2 9 DT 9 8 ? ? ? B . n B 2 10 DT 10 9 ? ? ? B . n B 2 11 DT 11 10 ? ? ? B . n B 2 12 DT 12 11 ? ? ? B . n B 2 13 DT 13 12 ? ? ? B . n B 2 14 DT 14 13 ? ? ? B . n B 2 15 DT 15 14 ? ? ? B . n B 2 16 DT 16 15 ? ? ? B . n B 2 17 DT 17 16 ? ? ? B . n B 2 18 DT 18 17 ? ? ? B . n B 2 19 DT 19 18 ? ? ? B . n B 2 20 DT 20 19 ? ? ? B . n B 2 21 DT 21 20 ? ? ? B . n B 2 22 DT 22 21 ? ? ? B . n B 2 23 DT 23 22 ? ? ? B . n B 2 24 DT 24 23 ? ? ? B . n B 2 25 DT 25 24 ? ? ? B . n B 2 26 DT 26 25 ? ? ? B . n B 2 27 DT 27 26 ? ? ? B . n B 2 28 DT 28 27 ? ? ? B . n B 2 29 DT 29 28 ? ? ? B . n B 2 30 DT 30 29 ? ? ? B . n B 2 31 DT 31 30 ? ? ? B . n B 2 32 DT 32 31 ? ? ? B . n B 2 33 DT 33 32 ? ? ? B . n B 2 34 DT 34 33 ? ? ? B . n B 2 35 DT 35 34 ? ? ? B . n B 2 36 DT 36 35 ? ? ? B . n B 2 37 DT 37 36 ? ? ? B . n B 2 38 DT 38 37 ? ? ? B . n B 2 39 DT 39 38 ? ? ? B . n B 2 40 DT 40 39 ? ? ? B . n B 2 41 DT 41 40 ? ? ? B . n B 2 42 DT 42 41 ? ? ? B . n B 2 43 DT 43 42 ? ? ? B . n B 2 44 DT 44 43 ? ? ? B . n B 2 45 DT 45 44 ? ? ? B . n B 2 46 DT 46 45 ? ? ? B . n B 2 47 DT 47 46 ? ? ? B . n B 2 48 DT 48 47 ? ? ? B . n B 2 49 DT 49 48 ? ? ? B . n C 1 1 GLU 1 61 ? ? ? C . n C 1 2 TYR 2 62 ? ? ? C . n C 1 3 GLY 3 63 ? ? ? C . n C 1 4 ASP 4 64 ? ? ? C . n C 1 5 LEU 5 65 ? ? ? C . n C 1 6 HIS 6 66 ? ? ? C . n C 1 7 LEU 7 67 ? ? ? C . n C 1 8 PHE 8 68 ? ? ? C . n C 1 9 GLY 9 69 ? ? ? C . n C 1 10 PRO 10 70 ? ? ? C . n C 1 11 ASN 11 71 ? ? ? C . n C 1 12 GLN 12 72 ? ? ? C . n C 1 13 ARG 13 73 ? ? ? C . n C 1 14 PRO 14 74 74 PRO PRO C . n C 1 15 ALA 15 75 75 ALA ALA C . n C 1 16 PRO 16 76 76 PRO PRO C . n C 1 17 CYS 17 77 77 CYS CYS C . n C 1 18 TYR 18 78 78 TYR TYR C . n C 1 19 ASP 19 79 79 ASP ASP C . n C 1 20 PRO 20 80 80 PRO PRO C . n C 1 21 CYS 21 81 81 CYS CYS C . n C 1 22 GLU 22 82 82 GLU GLU C . n C 1 23 ALA 23 83 83 ALA ALA C . n C 1 24 VAL 24 84 84 VAL VAL C . n C 1 25 LEU 25 85 85 LEU LEU C . n C 1 26 VAL 26 86 86 VAL VAL C . n C 1 27 GLU 27 87 87 GLU GLU C . n C 1 28 SER 28 88 88 SER SER C . n C 1 29 ILE 29 89 89 ILE ILE C . n C 1 30 PRO 30 90 90 PRO PRO C . n C 1 31 GLU 31 91 91 GLU GLU C . n C 1 32 GLY 32 92 92 GLY GLY C . n C 1 33 LEU 33 93 93 LEU LEU C . n C 1 34 ASP 34 94 94 ASP ASP C . n C 1 35 PHE 35 95 95 PHE PHE C . n C 1 36 PRO 36 96 96 PRO PRO C . n C 1 37 ASN 37 97 97 ASN ASN C . n C 1 38 ALA 38 98 98 ALA ALA C . n C 1 39 SER 39 99 99 SER SER C . n C 1 40 THR 40 100 100 THR THR C . n C 1 41 GLY 41 101 101 GLY GLY C . n C 1 42 ASN 42 102 102 ASN ASN C . n C 1 43 PRO 43 103 103 PRO PRO C . n C 1 44 SER 44 104 104 SER SER C . n C 1 45 THR 45 105 105 THR THR C . n C 1 46 SER 46 106 106 SER SER C . n C 1 47 GLN 47 107 107 GLN GLN C . n C 1 48 ALA 48 108 108 ALA ALA C . n C 1 49 TRP 49 109 109 TRP TRP C . n C 1 50 LEU 50 110 110 LEU LEU C . n C 1 51 GLY 51 111 111 GLY GLY C . n C 1 52 LEU 52 112 112 LEU LEU C . n C 1 53 LEU 53 113 113 LEU LEU C . n C 1 54 ALA 54 114 114 ALA ALA C . n C 1 55 GLY 55 115 115 GLY GLY C . n C 1 56 ALA 56 116 116 ALA ALA C . n C 1 57 HIS 57 117 117 HIS HIS C . n C 1 58 SER 58 118 118 SER SER C . n C 1 59 SER 59 119 119 SER SER C . n C 1 60 LEU 60 120 120 LEU LEU C . n C 1 61 ASP 61 121 121 ASP ASP C . n C 1 62 ILE 62 122 122 ILE ILE C . n C 1 63 ALA 63 123 123 ALA ALA C . n C 1 64 SER 64 124 124 SER SER C . n C 1 65 PHE 65 125 125 PHE PHE C . n C 1 66 TYR 66 126 126 TYR TYR C . n C 1 67 TRP 67 127 127 TRP TRP C . n C 1 68 THR 68 128 128 THR THR C . n C 1 69 LEU 69 129 129 LEU LEU C . n C 1 70 THR 70 130 130 THR THR C . n C 1 71 ASN 71 131 131 ASN ASN C . n C 1 72 ASN 72 132 132 ASN ASN C . n C 1 73 ASP 73 133 133 ASP ASP C . n C 1 74 THR 74 134 134 THR THR C . n C 1 75 HIS 75 135 135 HIS HIS C . n C 1 76 THR 76 136 136 THR THR C . n C 1 77 GLN 77 137 137 GLN GLN C . n C 1 78 GLU 78 138 138 GLU GLU C . n C 1 79 PRO 79 139 139 PRO PRO C . n C 1 80 SER 80 140 140 SER SER C . n C 1 81 ALA 81 141 141 ALA ALA C . n C 1 82 GLN 82 142 142 GLN GLN C . n C 1 83 GLN 83 143 143 GLN GLN C . n C 1 84 GLY 84 144 144 GLY GLY C . n C 1 85 GLU 85 145 145 GLU GLU C . n C 1 86 GLU 86 146 146 GLU GLU C . n C 1 87 VAL 87 147 147 VAL VAL C . n C 1 88 LEU 88 148 148 LEU LEU C . n C 1 89 ARG 89 149 149 ARG ARG C . n C 1 90 GLN 90 150 150 GLN GLN C . n C 1 91 LEU 91 151 151 LEU LEU C . n C 1 92 GLN 92 152 152 GLN GLN C . n C 1 93 THR 93 153 153 THR THR C . n C 1 94 LEU 94 154 154 LEU LEU C . n C 1 95 ALA 95 155 155 ALA ALA C . n C 1 96 PRO 96 156 156 PRO PRO C . n C 1 97 LYS 97 157 157 LYS LYS C . n C 1 98 GLY 98 158 158 GLY GLY C . n C 1 99 VAL 99 159 159 VAL VAL C . n C 1 100 ASN 100 160 160 ASN ASN C . n C 1 101 VAL 101 161 161 VAL VAL C . n C 1 102 ARG 102 162 162 ARG ARG C . n C 1 103 ILE 103 163 163 ILE ILE C . n C 1 104 ALA 104 164 164 ALA ALA C . n C 1 105 VAL 105 165 165 VAL VAL C . n C 1 106 SER 106 166 166 SER SER C . n C 1 107 LYS 107 167 167 LYS LYS C . n C 1 108 PRO 108 168 168 PRO PRO C . n C 1 109 SER 109 169 169 SER SER C . n C 1 110 GLY 110 170 170 GLY GLY C . n C 1 111 PRO 111 171 171 PRO PRO C . n C 1 112 GLN 112 172 172 GLN GLN C . n C 1 113 PRO 113 173 173 PRO PRO C . n C 1 114 GLN 114 174 174 GLN GLN C . n C 1 115 ALA 115 175 175 ALA ALA C . n C 1 116 ASP 116 176 176 ASP ASP C . n C 1 117 LEU 117 177 177 LEU LEU C . n C 1 118 GLN 118 178 178 GLN GLN C . n C 1 119 ALA 119 179 179 ALA ALA C . n C 1 120 LEU 120 180 180 LEU LEU C . n C 1 121 LEU 121 181 181 LEU LEU C . n C 1 122 GLN 122 182 182 GLN GLN C . n C 1 123 SER 123 183 183 SER SER C . n C 1 124 GLY 124 184 184 GLY GLY C . n C 1 125 ALA 125 185 185 ALA ALA C . n C 1 126 GLN 126 186 186 GLN GLN C . n C 1 127 VAL 127 187 187 VAL VAL C . n C 1 128 ARG 128 188 188 ARG ARG C . n C 1 129 MET 129 189 189 MET MET C . n C 1 130 VAL 130 190 190 VAL VAL C . n C 1 131 ASP 131 191 191 ASP ASP C . n C 1 132 MET 132 192 192 MET MET C . n C 1 133 GLN 133 193 193 GLN GLN C . n C 1 134 LYS 134 194 194 LYS LYS C . n C 1 135 LEU 135 195 195 LEU LEU C . n C 1 136 THR 136 196 196 THR THR C . n C 1 137 HIS 137 197 197 HIS HIS C . n C 1 138 GLY 138 198 198 GLY GLY C . n C 1 139 VAL 139 199 199 VAL VAL C . n C 1 140 LEU 140 200 200 LEU LEU C . n C 1 141 ALA 141 201 201 ALA ALA C . n C 1 142 THR 142 202 202 THR THR C . n C 1 143 LYS 143 203 203 LYS LYS C . n C 1 144 PHE 144 204 204 PHE PHE C . n C 1 145 TRP 145 205 205 TRP TRP C . n C 1 146 VAL 146 206 206 VAL VAL C . n C 1 147 VAL 147 207 207 VAL VAL C . n C 1 148 ASP 148 208 208 ASP ASP C . n C 1 149 GLN 149 209 209 GLN GLN C . n C 1 150 THR 150 210 210 THR THR C . n C 1 151 HIS 151 211 211 HIS HIS C . n C 1 152 PHE 152 212 212 PHE PHE C . n C 1 153 TYR 153 213 213 TYR TYR C . n C 1 154 LEU 154 214 214 LEU LEU C . n C 1 155 GLY 155 215 215 GLY GLY C . n C 1 156 SER 156 216 216 SER SER C . n C 1 157 ALA 157 217 217 ALA ALA C . n C 1 158 ASN 158 218 218 ASN ASN C . n C 1 159 MET 159 219 219 MET MET C . n C 1 160 ASP 160 220 220 ASP ASP C . n C 1 161 TRP 161 221 221 TRP TRP C . n C 1 162 ARG 162 222 222 ARG ARG C . n C 1 163 SER 163 223 223 SER SER C . n C 1 164 LEU 164 224 224 LEU LEU C . n C 1 165 THR 165 225 225 THR THR C . n C 1 166 GLN 166 226 226 GLN GLN C . n C 1 167 VAL 167 227 227 VAL VAL C . n C 1 168 LYS 168 228 228 LYS LYS C . n C 1 169 GLU 169 229 229 GLU GLU C . n C 1 170 LEU 170 230 230 LEU LEU C . n C 1 171 GLY 171 231 231 GLY GLY C . n C 1 172 VAL 172 232 232 VAL VAL C . n C 1 173 VAL 173 233 233 VAL VAL C . n C 1 174 MET 174 234 234 MET MET C . n C 1 175 TYR 175 235 235 TYR TYR C . n C 1 176 ASN 176 236 236 ASN ASN C . n C 1 177 CYS 177 237 237 CYS CYS C . n C 1 178 SER 178 238 238 SER SER C . n C 1 179 CYS 179 239 239 CYS CYS C . n C 1 180 LEU 180 240 240 LEU LEU C . n C 1 181 ALA 181 241 241 ALA ALA C . n C 1 182 ARG 182 242 242 ARG ARG C . n C 1 183 ASP 183 243 243 ASP ASP C . n C 1 184 LEU 184 244 244 LEU LEU C . n C 1 185 THR 185 245 245 THR THR C . n C 1 186 LYS 186 246 246 LYS LYS C . n C 1 187 ILE 187 247 247 ILE ILE C . n C 1 188 PHE 188 248 248 PHE PHE C . n C 1 189 GLU 189 249 249 GLU GLU C . n C 1 190 ALA 190 250 250 ALA ALA C . n C 1 191 TYR 191 251 251 TYR TYR C . n C 1 192 TRP 192 252 252 TRP TRP C . n C 1 193 PHE 193 253 253 PHE PHE C . n C 1 194 LEU 194 254 254 LEU LEU C . n C 1 195 GLY 195 255 255 GLY GLY C . n C 1 196 GLN 196 256 256 GLN GLN C . n C 1 197 ALA 197 257 257 ALA ALA C . n C 1 198 GLY 198 258 258 GLY GLY C . n C 1 199 SER 199 259 259 SER SER C . n C 1 200 SER 200 260 260 SER SER C . n C 1 201 ILE 201 261 261 ILE ILE C . n C 1 202 PRO 202 262 262 PRO PRO C . n C 1 203 SER 203 263 263 SER SER C . n C 1 204 THR 204 264 264 THR THR C . n C 1 205 TRP 205 265 265 TRP TRP C . n C 1 206 PRO 206 266 266 PRO PRO C . n C 1 207 ARG 207 267 267 ARG ARG C . n C 1 208 PHE 208 268 268 PHE PHE C . n C 1 209 TYR 209 269 269 TYR TYR C . n C 1 210 ASP 210 270 270 ASP ASP C . n C 1 211 THR 211 271 271 THR THR C . n C 1 212 ARG 212 272 272 ARG ARG C . n C 1 213 TYR 213 273 273 TYR TYR C . n C 1 214 ASN 214 274 274 ASN ASN C . n C 1 215 GLN 215 275 275 GLN GLN C . n C 1 216 GLU 216 276 276 GLU GLU C . n C 1 217 THR 217 277 277 THR THR C . n C 1 218 PRO 218 278 278 PRO PRO C . n C 1 219 MET 219 279 279 MET MET C . n C 1 220 GLU 220 280 280 GLU GLU C . n C 1 221 ILE 221 281 281 ILE ILE C . n C 1 222 CYS 222 282 282 CYS CYS C . n C 1 223 LEU 223 283 283 LEU LEU C . n C 1 224 ASN 224 284 284 ASN ASN C . n C 1 225 GLY 225 285 285 GLY GLY C . n C 1 226 THR 226 286 286 THR THR C . n C 1 227 PRO 227 287 287 PRO PRO C . n C 1 228 ALA 228 288 288 ALA ALA C . n C 1 229 LEU 229 289 289 LEU LEU C . n C 1 230 ALA 230 290 290 ALA ALA C . n C 1 231 TYR 231 291 291 TYR TYR C . n C 1 232 LEU 232 292 292 LEU LEU C . n C 1 233 ALA 233 293 293 ALA ALA C . n C 1 234 SER 234 294 294 SER SER C . n C 1 235 ALA 235 295 295 ALA ALA C . n C 1 236 PRO 236 296 296 PRO PRO C . n C 1 237 PRO 237 297 297 PRO PRO C . n C 1 238 PRO 238 298 298 PRO PRO C . n C 1 239 LEU 239 299 299 LEU LEU C . n C 1 240 CYS 240 300 300 CYS CYS C . n C 1 241 PRO 241 301 301 PRO PRO C . n C 1 242 SER 242 302 302 SER SER C . n C 1 243 GLY 243 303 303 GLY GLY C . n C 1 244 ARG 244 304 304 ARG ARG C . n C 1 245 THR 245 305 305 THR THR C . n C 1 246 PRO 246 306 306 PRO PRO C . n C 1 247 ASP 247 307 307 ASP ASP C . n C 1 248 LEU 248 308 308 LEU LEU C . n C 1 249 LYS 249 309 309 LYS LYS C . n C 1 250 ALA 250 310 310 ALA ALA C . n C 1 251 LEU 251 311 311 LEU LEU C . n C 1 252 LEU 252 312 312 LEU LEU C . n C 1 253 ASN 253 313 313 ASN ASN C . n C 1 254 VAL 254 314 314 VAL VAL C . n C 1 255 VAL 255 315 315 VAL VAL C . n C 1 256 ASP 256 316 316 ASP ASP C . n C 1 257 ASN 257 317 317 ASN ASN C . n C 1 258 ALA 258 318 318 ALA ALA C . n C 1 259 ARG 259 319 319 ARG ARG C . n C 1 260 SER 260 320 320 SER SER C . n C 1 261 PHE 261 321 321 PHE PHE C . n C 1 262 ILE 262 322 322 ILE ILE C . n C 1 263 TYR 263 323 323 TYR TYR C . n C 1 264 VAL 264 324 324 VAL VAL C . n C 1 265 ALA 265 325 325 ALA ALA C . n C 1 266 VAL 266 326 326 VAL VAL C . n C 1 267 MET 267 327 327 MET MET C . n C 1 268 ASN 268 328 328 ASN ASN C . n C 1 269 TYR 269 329 329 TYR TYR C . n C 1 270 LEU 270 330 330 LEU LEU C . n C 1 271 PRO 271 331 331 PRO PRO C . n C 1 272 THR 272 332 332 THR THR C . n C 1 273 LEU 273 333 333 LEU LEU C . n C 1 274 GLU 274 334 334 GLU GLU C . n C 1 275 PHE 275 335 335 PHE PHE C . n C 1 276 SER 276 336 336 SER ALA C . n C 1 277 HIS 277 337 337 HIS HIS C . n C 1 278 PRO 278 338 338 PRO PRO C . n C 1 279 HIS 279 339 339 HIS HIS C . n C 1 280 ARG 280 340 340 ARG ARG C . n C 1 281 PHE 281 341 341 PHE PHE C . n C 1 282 TRP 282 342 342 TRP TRP C . n C 1 283 PRO 283 343 343 PRO PRO C . n C 1 284 ALA 284 344 344 ALA ALA C . n C 1 285 ILE 285 345 345 ILE ILE C . n C 1 286 ASP 286 346 346 ASP ASP C . n C 1 287 ASP 287 347 347 ASP ASP C . n C 1 288 GLY 288 348 348 GLY GLY C . n C 1 289 LEU 289 349 349 LEU LEU C . n C 1 290 ARG 290 350 350 ARG ARG C . n C 1 291 ARG 291 351 351 ARG ARG C . n C 1 292 ALA 292 352 352 ALA ALA C . n C 1 293 THR 293 353 353 THR THR C . n C 1 294 TYR 294 354 354 TYR TYR C . n C 1 295 GLU 295 355 355 GLU GLU C . n C 1 296 ARG 296 356 356 ARG ARG C . n C 1 297 GLY 297 357 357 GLY GLY C . n C 1 298 VAL 298 358 358 VAL VAL C . n C 1 299 LYS 299 359 359 LYS LYS C . n C 1 300 VAL 300 360 360 VAL VAL C . n C 1 301 ARG 301 361 361 ARG ARG C . n C 1 302 LEU 302 362 362 LEU LEU C . n C 1 303 LEU 303 363 363 LEU LEU C . n C 1 304 ILE 304 364 364 ILE ILE C . n C 1 305 SER 305 365 365 SER SER C . n C 1 306 CYS 306 366 366 CYS CYS C . n C 1 307 TRP 307 367 367 TRP TRP C . n C 1 308 GLY 308 368 368 GLY GLY C . n C 1 309 HIS 309 369 369 HIS HIS C . n C 1 310 SER 310 370 370 SER SER C . n C 1 311 GLU 311 371 371 GLU GLU C . n C 1 312 PRO 312 372 372 PRO PRO C . n C 1 313 SER 313 373 373 SER SER C . n C 1 314 MET 314 374 374 MET MET C . n C 1 315 ARG 315 375 375 ARG ARG C . n C 1 316 ALA 316 376 376 ALA ALA C . n C 1 317 PHE 317 377 377 PHE PHE C . n C 1 318 LEU 318 378 378 LEU LEU C . n C 1 319 LEU 319 379 379 LEU LEU C . n C 1 320 SER 320 380 380 SER SER C . n C 1 321 LEU 321 381 381 LEU LEU C . n C 1 322 ALA 322 382 382 ALA ALA C . n C 1 323 ALA 323 383 383 ALA ALA C . n C 1 324 LEU 324 384 384 LEU LEU C . n C 1 325 ARG 325 385 385 ARG ARG C . n C 1 326 ASP 326 386 386 ASP ASP C . n C 1 327 ASN 327 387 387 ASN ASN C . n C 1 328 HIS 328 388 388 HIS HIS C . n C 1 329 THR 329 389 389 THR THR C . n C 1 330 HIS 330 390 390 HIS HIS C . n C 1 331 SER 331 391 391 SER SER C . n C 1 332 ASP 332 392 392 ASP ASP C . n C 1 333 ILE 333 393 393 ILE ILE C . n C 1 334 GLN 334 394 394 GLN GLN C . n C 1 335 VAL 335 395 395 VAL VAL C . n C 1 336 LYS 336 396 396 LYS LYS C . n C 1 337 LEU 337 397 397 LEU LEU C . n C 1 338 PHE 338 398 398 PHE PHE C . n C 1 339 VAL 339 399 399 VAL VAL C . n C 1 340 VAL 340 400 400 VAL VAL C . n C 1 341 PRO 341 401 401 PRO PRO C . n C 1 342 ALA 342 402 402 ALA ALA C . n C 1 343 ASP 343 403 403 ASP ASP C . n C 1 344 GLU 344 404 404 GLU GLU C . n C 1 345 ALA 345 405 405 ALA ALA C . n C 1 346 GLN 346 406 406 GLN GLN C . n C 1 347 ALA 347 407 407 ALA ALA C . n C 1 348 ARG 348 408 408 ARG ARG C . n C 1 349 ILE 349 409 409 ILE ILE C . n C 1 350 PRO 350 410 410 PRO PRO C . n C 1 351 TYR 351 411 411 TYR TYR C . n C 1 352 ALA 352 412 412 ALA ALA C . n C 1 353 ARG 353 413 413 ARG ARG C . n C 1 354 VAL 354 414 414 VAL VAL C . n C 1 355 ASN 355 415 415 ASN ASN C . n C 1 356 ALA 356 416 416 ALA ALA C . n C 1 357 ASN 357 417 417 ASN ASN C . n C 1 358 LYS 358 418 418 LYS LYS C . n C 1 359 TYR 359 419 419 TYR TYR C . n C 1 360 MET 360 420 420 MET MET C . n C 1 361 VAL 361 421 421 VAL VAL C . n C 1 362 THR 362 422 422 THR THR C . n C 1 363 GLU 363 423 423 GLU GLU C . n C 1 364 ARG 364 424 424 ARG ARG C . n C 1 365 ALA 365 425 425 ALA ALA C . n C 1 366 THR 366 426 426 THR THR C . n C 1 367 TYR 367 427 427 TYR TYR C . n C 1 368 ILE 368 428 428 ILE ILE C . n C 1 369 GLY 369 429 429 GLY GLY C . n C 1 370 THR 370 430 430 THR THR C . n C 1 371 SER 371 431 431 SER SER C . n C 1 372 ASN 372 432 432 ASN ASN C . n C 1 373 TRP 373 433 433 TRP TRP C . n C 1 374 SER 374 434 434 SER SER C . n C 1 375 GLY 375 435 435 GLY GLY C . n C 1 376 ASN 376 436 436 ASN ASN C . n C 1 377 TYR 377 437 437 TYR TYR C . n C 1 378 PHE 378 438 438 PHE PHE C . n C 1 379 THR 379 439 439 THR THR C . n C 1 380 GLU 380 440 440 GLU GLU C . n C 1 381 THR 381 441 441 THR THR C . n C 1 382 ALA 382 442 442 ALA ALA C . n C 1 383 GLY 383 443 443 GLY GLY C . n C 1 384 THR 384 444 444 THR THR C . n C 1 385 SER 385 445 445 SER SER C . n C 1 386 LEU 386 446 446 LEU LEU C . n C 1 387 LEU 387 447 447 LEU LEU C . n C 1 388 VAL 388 448 448 VAL VAL C . n C 1 389 THR 389 449 449 THR THR C . n C 1 390 GLN 390 450 450 GLN GLN C . n C 1 391 ASN 391 451 451 ASN ASN C . n C 1 392 GLY 392 452 452 GLY GLY C . n C 1 393 ARG 393 453 453 ARG ARG C . n C 1 394 GLY 394 454 454 GLY GLY C . n C 1 395 GLY 395 455 455 GLY GLY C . n C 1 396 LEU 396 456 456 LEU LEU C . n C 1 397 ARG 397 457 457 ARG ARG C . n C 1 398 SER 398 458 458 SER SER C . n C 1 399 GLN 399 459 459 GLN GLN C . n C 1 400 LEU 400 460 460 LEU LEU C . n C 1 401 GLU 401 461 461 GLU GLU C . n C 1 402 ALA 402 462 462 ALA ALA C . n C 1 403 ILE 403 463 463 ILE ILE C . n C 1 404 PHE 404 464 464 PHE PHE C . n C 1 405 LEU 405 465 465 LEU LEU C . n C 1 406 ARG 406 466 466 ARG ARG C . n C 1 407 ASP 407 467 467 ASP ASP C . n C 1 408 TRP 408 468 468 TRP TRP C . n C 1 409 ASP 409 469 469 ASP ASP C . n C 1 410 SER 410 470 470 SER SER C . n C 1 411 PRO 411 471 471 PRO PRO C . n C 1 412 TYR 412 472 472 TYR TYR C . n C 1 413 SER 413 473 473 SER SER C . n C 1 414 HIS 414 474 474 HIS HIS C . n C 1 415 ASP 415 475 475 ASP ASP C . n C 1 416 LEU 416 476 476 LEU LEU C . n C 1 417 ASP 417 477 477 ASP ASP C . n C 1 418 THR 418 478 478 THR THR C . n C 1 419 SER 419 479 479 SER SER C . n C 1 420 ALA 420 480 480 ALA ALA C . n C 1 421 ASP 421 481 481 ASP ASP C . n C 1 422 SER 422 482 482 SER SER C . n C 1 423 VAL 423 483 483 VAL VAL C . n C 1 424 GLY 424 484 484 GLY GLY C . n C 1 425 ASN 425 485 485 ASN ASN C . n C 1 426 ALA 426 486 486 ALA ALA C . n C 1 427 CYS 427 487 487 CYS CYS C . n C 1 428 ARG 428 488 488 ARG ARG C . n C 1 429 LEU 429 489 489 LEU LEU C . n C 1 430 LEU 430 490 490 LEU LEU C . n C 1 431 LEU 431 491 491 LEU LEU C . n C 1 432 GLU 432 492 492 GLU GLU C . n C 1 433 VAL 433 493 493 VAL VAL C . n C 1 434 LEU 434 494 ? ? ? C . n C 1 435 PHE 435 495 ? ? ? C . n C 1 436 GLN 436 496 ? ? ? C . n D 2 1 DT 1 0 0 DT DT D . n D 2 2 DT 2 1 1 DT DT D . n D 2 3 DT 3 2 2 DT DT D . n D 2 4 DT 4 3 3 DT DT D . n D 2 5 DT 5 4 ? ? ? D . n D 2 6 DT 6 5 ? ? ? D . n D 2 7 DT 7 6 ? ? ? D . n D 2 8 DT 8 7 ? ? ? D . n D 2 9 DT 9 8 ? ? ? D . n D 2 10 DT 10 9 ? ? ? D . n D 2 11 DT 11 10 ? ? ? D . n D 2 12 DT 12 11 ? ? ? D . n D 2 13 DT 13 12 ? ? ? D . n D 2 14 DT 14 13 ? ? ? D . n D 2 15 DT 15 14 ? ? ? D . n D 2 16 DT 16 15 ? ? ? D . n D 2 17 DT 17 16 ? ? ? D . n D 2 18 DT 18 17 ? ? ? D . n D 2 19 DT 19 18 ? ? ? D . n D 2 20 DT 20 19 ? ? ? D . n D 2 21 DT 21 20 ? ? ? D . n D 2 22 DT 22 21 ? ? ? D . n D 2 23 DT 23 22 ? ? ? D . n D 2 24 DT 24 23 ? ? ? D . n D 2 25 DT 25 24 ? ? ? D . n D 2 26 DT 26 25 ? ? ? D . n D 2 27 DT 27 26 ? ? ? D . n D 2 28 DT 28 27 ? ? ? D . n D 2 29 DT 29 28 ? ? ? D . n D 2 30 DT 30 29 ? ? ? D . n D 2 31 DT 31 30 ? ? ? D . n D 2 32 DT 32 31 ? ? ? D . n D 2 33 DT 33 32 ? ? ? D . n D 2 34 DT 34 33 ? ? ? D . n D 2 35 DT 35 34 ? ? ? D . n D 2 36 DT 36 35 ? ? ? D . n D 2 37 DT 37 36 ? ? ? D . n D 2 38 DT 38 37 ? ? ? D . n D 2 39 DT 39 38 ? ? ? D . n D 2 40 DT 40 39 ? ? ? D . n D 2 41 DT 41 40 ? ? ? D . n D 2 42 DT 42 41 ? ? ? D . n D 2 43 DT 43 42 ? ? ? D . n D 2 44 DT 44 43 ? ? ? D . n D 2 45 DT 45 44 ? ? ? D . n D 2 46 DT 46 45 ? ? ? D . n D 2 47 DT 47 46 ? ? ? D . n D 2 48 DT 48 47 ? ? ? D . n D 2 49 DT 49 48 ? ? ? D . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 3 NAG 1 E NAG 1 A NAG 1001 n E 3 NAG 2 E NAG 2 A NAG 1002 n F 4 NAG 1 F NAG 1 A NAG 1003 n F 4 NAG 2 F NAG 2 A NAG 1004 n F 4 BMA 3 F BMA 3 A BMA 1005 n G 5 NAG 1 G NAG 1 A NAG 1006 n G 5 NAG 2 G NAG 2 A NAG 1007 n G 5 BMA 3 G BMA 3 A BMA 1008 n G 5 MAN 4 G MAN 4 A MAN 1009 n G 5 MAN 5 G MAN 5 A MAN 1010 n H 3 NAG 1 H NAG 1 A NAG 1011 n H 3 NAG 2 H NAG 2 A NAG 1012 n I 3 NAG 1 I NAG 1 C NAG 1001 n I 3 NAG 2 I NAG 2 C NAG 1002 n J 4 NAG 1 J NAG 1 C NAG 1003 n J 4 NAG 2 J NAG 2 C NAG 1004 n J 4 BMA 3 J BMA 3 C BMA 1005 n K 5 NAG 1 K NAG 1 C NAG 1006 n K 5 NAG 2 K NAG 2 C NAG 1007 n K 5 BMA 3 K BMA 3 C BMA 1008 n K 5 MAN 4 K MAN 4 C MAN 1009 n K 5 MAN 5 K MAN 5 C MAN 1010 n L 3 NAG 1 L NAG 1 C NAG 1011 n L 3 NAG 2 L NAG 2 C NAG 1012 n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 336 ? OG ? A SER 276 OG 2 1 Y 1 C SER 336 ? OG ? C SER 276 OG # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9VBH _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9VBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9VBH _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9VBH _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 9VBH _struct.title 'Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9VBH _struct_keywords.text 'Exonuclease, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 5 ? L N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP PLD3_HUMAN Q8IV08 ? 1 ;EYGDLHLFGPNQRPAPCYDPCEAVLVESIPEGLDFPNASTGNPSTSQAWLGLLAGAHSSLDIASFYWTLTNNDTHTQEPS AQQGEEVLRQLQTLAPKGVNVRIAVSKPSGPQPQADLQALLQSGAQVRMVDMQKLTHGVLHTKFWVVDQTHFYLGSANMD WRSLTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRFYDTRYNQETPMEICLNGTPALAYLASAPPPLC PSGRTPDLKALLNVVDNARSFIYVAVMNYLPTLEFSHPHRFWPAIDDGLRRATYERGVKVRLLISCWGHSEPSMRAFLLS LAALRDNHTHSDIQVKLFVVPADEAQARIPYARVNHNKYMVTERATYIGTSNWSGNYFTETAGTSLLVTQNGRGGLRSQL EAIFLRDWDSPYSHDLDTSADSVGNACRLL ; 61 2 PDB 9VBH 9VBH ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9VBH A 1 ? 430 ? Q8IV08 61 ? 490 ? 61 490 2 2 9VBH B 1 ? 49 ? 9VBH 0 ? 48 ? 0 48 3 1 9VBH C 1 ? 430 ? Q8IV08 61 ? 490 ? 61 490 4 2 9VBH D 1 ? 49 ? 9VBH 0 ? 48 ? 0 48 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9VBH ALA A 141 ? UNP Q8IV08 HIS 201 'engineered mutation' 201 1 1 9VBH ALA A 356 ? UNP Q8IV08 HIS 416 'engineered mutation' 416 2 1 9VBH LEU A 431 ? UNP Q8IV08 ? ? 'expression tag' 491 3 1 9VBH GLU A 432 ? UNP Q8IV08 ? ? 'expression tag' 492 4 1 9VBH VAL A 433 ? UNP Q8IV08 ? ? 'expression tag' 493 5 1 9VBH LEU A 434 ? UNP Q8IV08 ? ? 'expression tag' 494 6 1 9VBH PHE A 435 ? UNP Q8IV08 ? ? 'expression tag' 495 7 1 9VBH GLN A 436 ? UNP Q8IV08 ? ? 'expression tag' 496 8 3 9VBH ALA C 141 ? UNP Q8IV08 HIS 201 'engineered mutation' 201 9 3 9VBH ALA C 356 ? UNP Q8IV08 HIS 416 'engineered mutation' 416 10 3 9VBH LEU C 431 ? UNP Q8IV08 ? ? 'expression tag' 491 11 3 9VBH GLU C 432 ? UNP Q8IV08 ? ? 'expression tag' 492 12 3 9VBH VAL C 433 ? UNP Q8IV08 ? ? 'expression tag' 493 13 3 9VBH LEU C 434 ? UNP Q8IV08 ? ? 'expression tag' 494 14 3 9VBH PHE C 435 ? UNP Q8IV08 ? ? 'expression tag' 495 15 3 9VBH GLN C 436 ? UNP Q8IV08 ? ? 'expression tag' 496 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 44 ? GLY A 55 ? SER A 104 GLY A 115 1 ? 12 HELX_P HELX_P2 AA2 GLU A 78 ? SER A 80 ? GLU A 138 SER A 140 5 ? 3 HELX_P HELX_P3 AA3 ALA A 81 ? ALA A 95 ? ALA A 141 ALA A 155 1 ? 15 HELX_P HELX_P4 AA4 GLN A 114 ? GLY A 124 ? GLN A 174 GLY A 184 1 ? 11 HELX_P HELX_P5 AA5 ASP A 131 ? THR A 136 ? ASP A 191 THR A 196 1 ? 6 HELX_P HELX_P6 AA6 CYS A 177 ? GLY A 195 ? CYS A 237 GLY A 255 1 ? 19 HELX_P HELX_P7 AA7 PRO A 236 ? CYS A 240 ? PRO A 296 CYS A 300 5 ? 5 HELX_P HELX_P8 AA8 ASP A 247 ? ALA A 258 ? ASP A 307 ALA A 318 1 ? 12 HELX_P HELX_P9 AA9 PRO A 283 ? ARG A 296 ? PRO A 343 ARG A 356 1 ? 14 HELX_P HELX_P10 AB1 SER A 313 ? ALA A 323 ? SER A 373 ALA A 383 1 ? 11 HELX_P HELX_P11 AB2 ASP A 343 ? ARG A 348 ? ASP A 403 ARG A 408 1 ? 6 HELX_P HELX_P12 AB3 GLY A 375 ? GLU A 380 ? GLY A 435 GLU A 440 1 ? 6 HELX_P HELX_P13 AB4 GLY A 395 ? ASP A 409 ? GLY A 455 ASP A 469 1 ? 15 HELX_P HELX_P14 AB5 SER C 44 ? GLY C 55 ? SER C 104 GLY C 115 1 ? 12 HELX_P HELX_P15 AB6 GLU C 78 ? SER C 80 ? GLU C 138 SER C 140 5 ? 3 HELX_P HELX_P16 AB7 ALA C 81 ? ALA C 95 ? ALA C 141 ALA C 155 1 ? 15 HELX_P HELX_P17 AB8 GLN C 114 ? GLY C 124 ? GLN C 174 GLY C 184 1 ? 11 HELX_P HELX_P18 AB9 ASP C 131 ? THR C 136 ? ASP C 191 THR C 196 1 ? 6 HELX_P HELX_P19 AC1 CYS C 177 ? GLY C 195 ? CYS C 237 GLY C 255 1 ? 19 HELX_P HELX_P20 AC2 PRO C 236 ? CYS C 240 ? PRO C 296 CYS C 300 5 ? 5 HELX_P HELX_P21 AC3 ASP C 247 ? ALA C 258 ? ASP C 307 ALA C 318 1 ? 12 HELX_P HELX_P22 AC4 PRO C 283 ? ARG C 296 ? PRO C 343 ARG C 356 1 ? 14 HELX_P HELX_P23 AC5 SER C 313 ? ALA C 323 ? SER C 373 ALA C 383 1 ? 11 HELX_P HELX_P24 AC6 ASP C 343 ? ARG C 348 ? ASP C 403 ARG C 408 1 ? 6 HELX_P HELX_P25 AC7 GLY C 375 ? GLU C 380 ? GLY C 435 GLU C 440 1 ? 6 HELX_P HELX_P26 AC8 GLY C 395 ? ASP C 409 ? GLY C 455 ASP C 469 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 179 SG ? ? A CYS 77 A CYS 239 1_555 ? ? ? ? ? ? ? 2.061 ? ? disulf2 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 177 SG ? ? A CYS 81 A CYS 237 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf3 disulf ? ? A CYS 306 SG ? ? ? 1_555 A CYS 427 SG ? ? A CYS 366 A CYS 487 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf4 disulf ? ? C CYS 17 SG ? ? ? 1_555 C CYS 179 SG ? ? C CYS 77 C CYS 239 1_555 ? ? ? ? ? ? ? 2.061 ? ? disulf5 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 177 SG ? ? C CYS 81 C CYS 237 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf6 disulf ? ? C CYS 306 SG ? ? ? 1_555 C CYS 427 SG ? ? C CYS 366 C CYS 487 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale one ? A ASN 72 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 132 E NAG 1 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation covale2 covale one ? A ASN 176 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 236 F NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale3 covale one ? A ASN 224 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 284 G NAG 1 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale4 covale one ? A ASN 327 ND2 ? ? ? 1_555 H NAG . C1 ? ? A ASN 387 H NAG 1 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale5 covale one ? C ASN 72 ND2 ? ? ? 1_555 I NAG . C1 ? ? C ASN 132 I NAG 1 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation covale6 covale one ? C ASN 176 ND2 ? ? ? 1_555 J NAG . C1 ? ? C ASN 236 J NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale7 covale one ? C ASN 224 ND2 ? ? ? 1_555 K NAG . C1 ? ? C ASN 284 K NAG 1 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale8 covale one ? C ASN 327 ND2 ? ? ? 1_555 L NAG . C1 ? ? C ASN 387 L NAG 1 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale9 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale10 covale both ? F NAG . O4 ? ? ? 1_555 F NAG . C1 ? ? F NAG 1 F NAG 2 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale11 covale both ? F NAG . O4 ? ? ? 1_555 F BMA . C1 ? ? F NAG 2 F BMA 3 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale12 covale both ? G NAG . O4 ? ? ? 1_555 G NAG . C1 ? ? G NAG 1 G NAG 2 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale13 covale both ? G NAG . O4 ? ? ? 1_555 G BMA . C1 ? ? G NAG 2 G BMA 3 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale14 covale both ? G BMA . O3 ? ? ? 1_555 G MAN . C1 ? ? G BMA 3 G MAN 4 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale15 covale both ? G BMA . O6 ? ? ? 1_555 G MAN . C1 ? ? G BMA 3 G MAN 5 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale16 covale both ? H NAG . O4 ? ? ? 1_555 H NAG . C1 ? ? H NAG 1 H NAG 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale17 covale both ? I NAG . O4 ? ? ? 1_555 I NAG . C1 ? ? I NAG 1 I NAG 2 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale18 covale both ? J NAG . O4 ? ? ? 1_555 J NAG . C1 ? ? J NAG 1 J NAG 2 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale19 covale both ? J NAG . O4 ? ? ? 1_555 J BMA . C1 ? ? J NAG 2 J BMA 3 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale20 covale both ? K NAG . O4 ? ? ? 1_555 K NAG . C1 ? ? K NAG 1 K NAG 2 1_555 ? ? ? ? ? ? ? 1.441 ? ? covale21 covale both ? K NAG . O4 ? ? ? 1_555 K BMA . C1 ? ? K NAG 2 K BMA 3 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale22 covale both ? K BMA . O3 ? ? ? 1_555 K MAN . C1 ? ? K BMA 3 K MAN 4 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale23 covale both ? K BMA . O6 ? ? ? 1_555 K MAN . C1 ? ? K BMA 3 K MAN 5 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale24 covale both ? L NAG . O4 ? ? ? 1_555 L NAG . C1 ? ? L NAG 1 L NAG 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG E . ? ASN A 72 ? NAG E 1 ? 1_555 ASN A 132 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG F . ? ASN A 176 ? NAG F 1 ? 1_555 ASN A 236 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG G . ? ASN A 224 ? NAG G 1 ? 1_555 ASN A 284 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 NAG H . ? ASN A 327 ? NAG H 1 ? 1_555 ASN A 387 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 5 NAG I . ? ASN C 72 ? NAG I 1 ? 1_555 ASN C 132 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 6 NAG J . ? ASN C 176 ? NAG J 1 ? 1_555 ASN C 236 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 7 NAG K . ? ASN C 224 ? NAG K 1 ? 1_555 ASN C 284 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 8 NAG L . ? ASN C 327 ? NAG L 1 ? 1_555 ASN C 387 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 9 CYS A 17 ? CYS A 179 ? CYS A 77 ? 1_555 CYS A 239 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS A 21 ? CYS A 177 ? CYS A 81 ? 1_555 CYS A 237 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS A 306 ? CYS A 427 ? CYS A 366 ? 1_555 CYS A 487 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS C 17 ? CYS C 179 ? CYS C 77 ? 1_555 CYS C 239 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS C 21 ? CYS C 177 ? CYS C 81 ? 1_555 CYS C 237 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS C 306 ? CYS C 427 ? CYS C 366 ? 1_555 CYS C 487 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 235 A . ? ALA 295 A PRO 236 A ? PRO 296 A 1 -10.37 2 HIS 277 A . ? HIS 337 A PRO 278 A ? PRO 338 A 1 3.95 3 ALA 235 C . ? ALA 295 C PRO 236 C ? PRO 296 C 1 -10.37 4 HIS 277 C . ? HIS 337 C PRO 278 C ? PRO 338 C 1 3.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 3 ? AA5 ? 9 ? AA6 ? 2 ? AA7 ? 7 ? AA8 ? 2 ? AA9 ? 2 ? AB1 ? 3 ? AB2 ? 9 ? AB3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? parallel AA1 6 7 ? parallel AA2 1 2 ? parallel AA3 1 2 ? parallel AA4 1 2 ? anti-parallel AA4 2 3 ? parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA5 6 7 ? parallel AA5 7 8 ? parallel AA5 8 9 ? anti-parallel AA6 1 2 ? parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA7 5 6 ? parallel AA7 6 7 ? parallel AA8 1 2 ? parallel AA9 1 2 ? parallel AB1 1 2 ? anti-parallel AB1 2 3 ? parallel AB2 1 2 ? anti-parallel AB2 2 3 ? anti-parallel AB2 3 4 ? anti-parallel AB2 4 5 ? anti-parallel AB2 5 6 ? anti-parallel AB2 6 7 ? parallel AB2 7 8 ? parallel AB2 8 9 ? anti-parallel AB3 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 22 ? VAL A 26 ? GLU A 82 VAL A 86 AA1 2 GLY A 171 ? TYR A 175 ? GLY A 231 TYR A 235 AA1 3 HIS A 151 ? GLY A 155 ? HIS A 211 GLY A 215 AA1 4 PHE A 144 ? VAL A 147 ? PHE A 204 VAL A 207 AA1 5 SER A 59 ? SER A 64 ? SER A 119 SER A 124 AA1 6 ASN A 100 ? SER A 106 ? ASN A 160 SER A 166 AA1 7 GLN A 126 ? VAL A 130 ? GLN A 186 VAL A 190 AA2 1 TRP A 67 ? THR A 68 ? TRP A 127 THR A 128 AA2 2 MET A 159 ? ASP A 160 ? MET A 219 ASP A 220 AA3 1 VAL A 167 ? LYS A 168 ? VAL A 227 LYS A 228 AA3 2 VAL A 354 ? ASN A 355 ? VAL A 414 ASN A 415 AA4 1 MET A 219 ? LEU A 223 ? MET A 279 LEU A 283 AA4 2 THR A 226 ? ALA A 235 ? THR A 286 ALA A 295 AA4 3 THR A 245 ? PRO A 246 ? THR A 305 PRO A 306 AA5 1 MET A 219 ? LEU A 223 ? MET A 279 LEU A 283 AA5 2 THR A 226 ? ALA A 235 ? THR A 286 ALA A 295 AA5 3 GLY A 383 ? THR A 389 ? GLY A 443 THR A 449 AA5 4 THR A 366 ? GLY A 369 ? THR A 426 GLY A 429 AA5 5 TYR A 359 ? THR A 362 ? TYR A 419 THR A 422 AA5 6 PHE A 261 ? VAL A 266 ? PHE A 321 VAL A 326 AA5 7 LYS A 299 ? SER A 305 ? LYS A 359 SER A 365 AA5 8 ASP A 332 ? PHE A 338 ? ASP A 392 PHE A 398 AA5 9 SER A 413 ? ASP A 415 ? SER A 473 ASP A 475 AA6 1 TYR A 269 ? LEU A 270 ? TYR A 329 LEU A 330 AA6 2 TRP A 373 ? SER A 374 ? TRP A 433 SER A 434 AA7 1 GLU C 22 ? VAL C 26 ? GLU C 82 VAL C 86 AA7 2 GLY C 171 ? TYR C 175 ? GLY C 231 TYR C 235 AA7 3 HIS C 151 ? GLY C 155 ? HIS C 211 GLY C 215 AA7 4 PHE C 144 ? VAL C 147 ? PHE C 204 VAL C 207 AA7 5 SER C 59 ? SER C 64 ? SER C 119 SER C 124 AA7 6 ASN C 100 ? SER C 106 ? ASN C 160 SER C 166 AA7 7 GLN C 126 ? VAL C 130 ? GLN C 186 VAL C 190 AA8 1 TRP C 67 ? THR C 68 ? TRP C 127 THR C 128 AA8 2 MET C 159 ? ASP C 160 ? MET C 219 ASP C 220 AA9 1 VAL C 167 ? LYS C 168 ? VAL C 227 LYS C 228 AA9 2 VAL C 354 ? ASN C 355 ? VAL C 414 ASN C 415 AB1 1 MET C 219 ? LEU C 223 ? MET C 279 LEU C 283 AB1 2 THR C 226 ? ALA C 235 ? THR C 286 ALA C 295 AB1 3 THR C 245 ? PRO C 246 ? THR C 305 PRO C 306 AB2 1 MET C 219 ? LEU C 223 ? MET C 279 LEU C 283 AB2 2 THR C 226 ? ALA C 235 ? THR C 286 ALA C 295 AB2 3 GLY C 383 ? THR C 389 ? GLY C 443 THR C 449 AB2 4 THR C 366 ? GLY C 369 ? THR C 426 GLY C 429 AB2 5 TYR C 359 ? THR C 362 ? TYR C 419 THR C 422 AB2 6 PHE C 261 ? VAL C 266 ? PHE C 321 VAL C 326 AB2 7 LYS C 299 ? SER C 305 ? LYS C 359 SER C 365 AB2 8 ASP C 332 ? PHE C 338 ? ASP C 392 PHE C 398 AB2 9 SER C 413 ? ASP C 415 ? SER C 473 ASP C 475 AB3 1 TYR C 269 ? LEU C 270 ? TYR C 329 LEU C 330 AB3 2 TRP C 373 ? SER C 374 ? TRP C 433 SER C 434 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 24 ? N VAL A 84 O VAL A 173 ? O VAL A 233 AA1 2 3 O VAL A 172 ? O VAL A 232 N LEU A 154 ? N LEU A 214 AA1 3 4 O TYR A 153 ? O TYR A 213 N TRP A 145 ? N TRP A 205 AA1 4 5 O PHE A 144 ? O PHE A 204 N ALA A 63 ? N ALA A 123 AA1 5 6 N SER A 64 ? N SER A 124 O ALA A 104 ? O ALA A 164 AA1 6 7 N ILE A 103 ? N ILE A 163 O GLN A 126 ? O GLN A 186 AA2 1 2 N THR A 68 ? N THR A 128 O MET A 159 ? O MET A 219 AA3 1 2 N LYS A 168 ? N LYS A 228 O VAL A 354 ? O VAL A 414 AA4 1 2 N MET A 219 ? N MET A 279 O ALA A 230 ? O ALA A 290 AA4 2 3 N SER A 234 ? N SER A 294 O THR A 245 ? O THR A 305 AA5 1 2 N MET A 219 ? N MET A 279 O ALA A 230 ? O ALA A 290 AA5 2 3 N ALA A 235 ? N ALA A 295 O GLY A 383 ? O GLY A 443 AA5 3 4 O LEU A 386 ? O LEU A 446 N ILE A 368 ? N ILE A 428 AA5 4 5 O TYR A 367 ? O TYR A 427 N MET A 360 ? N MET A 420 AA5 5 6 O VAL A 361 ? O VAL A 421 N TYR A 263 ? N TYR A 323 AA5 6 7 N ILE A 262 ? N ILE A 322 O ARG A 301 ? O ARG A 361 AA5 7 8 N ILE A 304 ? N ILE A 364 O PHE A 338 ? O PHE A 398 AA5 8 9 N LEU A 337 ? N LEU A 397 O HIS A 414 ? O HIS A 474 AA6 1 2 N LEU A 270 ? N LEU A 330 O TRP A 373 ? O TRP A 433 AA7 1 2 N VAL C 24 ? N VAL C 84 O VAL C 173 ? O VAL C 233 AA7 2 3 O VAL C 172 ? O VAL C 232 N LEU C 154 ? N LEU C 214 AA7 3 4 O TYR C 153 ? O TYR C 213 N TRP C 145 ? N TRP C 205 AA7 4 5 O PHE C 144 ? O PHE C 204 N ALA C 63 ? N ALA C 123 AA7 5 6 N SER C 64 ? N SER C 124 O ALA C 104 ? O ALA C 164 AA7 6 7 N ILE C 103 ? N ILE C 163 O GLN C 126 ? O GLN C 186 AA8 1 2 N THR C 68 ? N THR C 128 O MET C 159 ? O MET C 219 AA9 1 2 N LYS C 168 ? N LYS C 228 O VAL C 354 ? O VAL C 414 AB1 1 2 N MET C 219 ? N MET C 279 O ALA C 230 ? O ALA C 290 AB1 2 3 N SER C 234 ? N SER C 294 O THR C 245 ? O THR C 305 AB2 1 2 N MET C 219 ? N MET C 279 O ALA C 230 ? O ALA C 290 AB2 2 3 N ALA C 235 ? N ALA C 295 O GLY C 383 ? O GLY C 443 AB2 3 4 O LEU C 386 ? O LEU C 446 N ILE C 368 ? N ILE C 428 AB2 4 5 O TYR C 367 ? O TYR C 427 N MET C 360 ? N MET C 420 AB2 5 6 O VAL C 361 ? O VAL C 421 N TYR C 263 ? N TYR C 323 AB2 6 7 N ILE C 262 ? N ILE C 322 O ARG C 301 ? O ARG C 361 AB2 7 8 N ILE C 304 ? N ILE C 364 O PHE C 338 ? O PHE C 398 AB2 8 9 N LEU C 337 ? N LEU C 397 O HIS C 414 ? O HIS C 474 AB3 1 2 N LEU C 270 ? N LEU C 330 O TRP C 373 ? O TRP C 433 # _pdbx_entry_details.entry_id 9VBH _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 80 ? ? -65.60 59.02 2 1 ALA A 98 ? ? -94.42 -155.94 3 1 GLN A 174 ? ? -107.39 71.46 4 1 HIS A 197 ? ? 71.38 38.16 5 1 ALA A 201 ? ? -89.77 31.33 6 1 ASP A 208 ? ? 56.75 16.54 7 1 PRO A 301 ? ? -68.33 -178.10 8 1 PHE A 335 ? ? 34.63 47.75 9 1 SER A 336 ? ? -147.89 51.17 10 1 PRO A 343 ? ? -90.29 36.03 11 1 HIS A 390 ? ? 37.97 40.10 12 1 PRO C 80 ? ? -65.60 59.02 13 1 ALA C 98 ? ? -94.42 -155.94 14 1 GLN C 174 ? ? -107.39 71.46 15 1 HIS C 197 ? ? 71.38 38.16 16 1 ALA C 201 ? ? -89.77 31.33 17 1 ASP C 208 ? ? 56.75 16.54 18 1 PRO C 301 ? ? -68.33 -178.10 19 1 PHE C 335 ? ? 34.63 47.75 20 1 SER C 336 ? ? -147.89 51.17 21 1 PRO C 343 ? ? -90.29 36.03 22 1 HIS C 390 ? ? 37.97 40.10 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9VBH _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9VBH _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.85 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 510357 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 5.5 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 RECOMBINANT COMPLEX 'Homodimer of PLD3 luminal domain' ? ? ? '1, 2' 2 1 RECOMBINANT COMPLEX 'Homodimer of the luminal domain of PLD3' ? ? ? 1 3 1 SYNTHETIC COMPLEX ssDNA ? ? ? 2 # _em_imaging.entry_id 9VBH _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode OTHER _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9VBH _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9VBH _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9VBH _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 61 ? A GLU 1 2 1 Y 1 A TYR 62 ? A TYR 2 3 1 Y 1 A GLY 63 ? A GLY 3 4 1 Y 1 A ASP 64 ? A ASP 4 5 1 Y 1 A LEU 65 ? A LEU 5 6 1 Y 1 A HIS 66 ? A HIS 6 7 1 Y 1 A LEU 67 ? A LEU 7 8 1 Y 1 A PHE 68 ? A PHE 8 9 1 Y 1 A GLY 69 ? A GLY 9 10 1 Y 1 A PRO 70 ? A PRO 10 11 1 Y 1 A ASN 71 ? A ASN 11 12 1 Y 1 A GLN 72 ? A GLN 12 13 1 Y 1 A ARG 73 ? A ARG 13 14 1 Y 1 A LEU 494 ? A LEU 434 15 1 Y 1 A PHE 495 ? A PHE 435 16 1 Y 1 A GLN 496 ? A GLN 436 17 1 Y 1 B DT 4 ? B DT 5 18 1 Y 1 B DT 5 ? B DT 6 19 1 Y 1 B DT 6 ? B DT 7 20 1 Y 1 B DT 7 ? B DT 8 21 1 Y 1 B DT 8 ? B DT 9 22 1 Y 1 B DT 9 ? B DT 10 23 1 Y 1 B DT 10 ? B DT 11 24 1 Y 1 B DT 11 ? B DT 12 25 1 Y 1 B DT 12 ? B DT 13 26 1 Y 1 B DT 13 ? B DT 14 27 1 Y 1 B DT 14 ? B DT 15 28 1 Y 1 B DT 15 ? B DT 16 29 1 Y 1 B DT 16 ? B DT 17 30 1 Y 1 B DT 17 ? B DT 18 31 1 Y 1 B DT 18 ? B DT 19 32 1 Y 1 B DT 19 ? B DT 20 33 1 Y 1 B DT 20 ? B DT 21 34 1 Y 1 B DT 21 ? B DT 22 35 1 Y 1 B DT 22 ? B DT 23 36 1 Y 1 B DT 23 ? B DT 24 37 1 Y 1 B DT 24 ? B DT 25 38 1 Y 1 B DT 25 ? B DT 26 39 1 Y 1 B DT 26 ? B DT 27 40 1 Y 1 B DT 27 ? B DT 28 41 1 Y 1 B DT 28 ? B DT 29 42 1 Y 1 B DT 29 ? B DT 30 43 1 Y 1 B DT 30 ? B DT 31 44 1 Y 1 B DT 31 ? B DT 32 45 1 Y 1 B DT 32 ? B DT 33 46 1 Y 1 B DT 33 ? B DT 34 47 1 Y 1 B DT 34 ? B DT 35 48 1 Y 1 B DT 35 ? B DT 36 49 1 Y 1 B DT 36 ? B DT 37 50 1 Y 1 B DT 37 ? B DT 38 51 1 Y 1 B DT 38 ? B DT 39 52 1 Y 1 B DT 39 ? B DT 40 53 1 Y 1 B DT 40 ? B DT 41 54 1 Y 1 B DT 41 ? B DT 42 55 1 Y 1 B DT 42 ? B DT 43 56 1 Y 1 B DT 43 ? B DT 44 57 1 Y 1 B DT 44 ? B DT 45 58 1 Y 1 B DT 45 ? B DT 46 59 1 Y 1 B DT 46 ? B DT 47 60 1 Y 1 B DT 47 ? B DT 48 61 1 Y 1 B DT 48 ? B DT 49 62 1 Y 1 C GLU 61 ? C GLU 1 63 1 Y 1 C TYR 62 ? C TYR 2 64 1 Y 1 C GLY 63 ? C GLY 3 65 1 Y 1 C ASP 64 ? C ASP 4 66 1 Y 1 C LEU 65 ? C LEU 5 67 1 Y 1 C HIS 66 ? C HIS 6 68 1 Y 1 C LEU 67 ? C LEU 7 69 1 Y 1 C PHE 68 ? C PHE 8 70 1 Y 1 C GLY 69 ? C GLY 9 71 1 Y 1 C PRO 70 ? C PRO 10 72 1 Y 1 C ASN 71 ? C ASN 11 73 1 Y 1 C GLN 72 ? C GLN 12 74 1 Y 1 C ARG 73 ? C ARG 13 75 1 Y 1 C LEU 494 ? C LEU 434 76 1 Y 1 C PHE 495 ? C PHE 435 77 1 Y 1 C GLN 496 ? C GLN 436 78 1 Y 1 D DT 4 ? D DT 5 79 1 Y 1 D DT 5 ? D DT 6 80 1 Y 1 D DT 6 ? D DT 7 81 1 Y 1 D DT 7 ? D DT 8 82 1 Y 1 D DT 8 ? D DT 9 83 1 Y 1 D DT 9 ? D DT 10 84 1 Y 1 D DT 10 ? D DT 11 85 1 Y 1 D DT 11 ? D DT 12 86 1 Y 1 D DT 12 ? D DT 13 87 1 Y 1 D DT 13 ? D DT 14 88 1 Y 1 D DT 14 ? D DT 15 89 1 Y 1 D DT 15 ? D DT 16 90 1 Y 1 D DT 16 ? D DT 17 91 1 Y 1 D DT 17 ? D DT 18 92 1 Y 1 D DT 18 ? D DT 19 93 1 Y 1 D DT 19 ? D DT 20 94 1 Y 1 D DT 20 ? D DT 21 95 1 Y 1 D DT 21 ? D DT 22 96 1 Y 1 D DT 22 ? D DT 23 97 1 Y 1 D DT 23 ? D DT 24 98 1 Y 1 D DT 24 ? D DT 25 99 1 Y 1 D DT 25 ? D DT 26 100 1 Y 1 D DT 26 ? D DT 27 101 1 Y 1 D DT 27 ? D DT 28 102 1 Y 1 D DT 28 ? D DT 29 103 1 Y 1 D DT 29 ? D DT 30 104 1 Y 1 D DT 30 ? D DT 31 105 1 Y 1 D DT 31 ? D DT 32 106 1 Y 1 D DT 32 ? D DT 33 107 1 Y 1 D DT 33 ? D DT 34 108 1 Y 1 D DT 34 ? D DT 35 109 1 Y 1 D DT 35 ? D DT 36 110 1 Y 1 D DT 36 ? D DT 37 111 1 Y 1 D DT 37 ? D DT 38 112 1 Y 1 D DT 38 ? D DT 39 113 1 Y 1 D DT 39 ? D DT 40 114 1 Y 1 D DT 40 ? D DT 41 115 1 Y 1 D DT 41 ? D DT 42 116 1 Y 1 D DT 42 ? D DT 43 117 1 Y 1 D DT 43 ? D DT 44 118 1 Y 1 D DT 44 ? D DT 45 119 1 Y 1 D DT 45 ? D DT 46 120 1 Y 1 D DT 46 ? D DT 47 121 1 Y 1 D DT 47 ? D DT 48 122 1 Y 1 D DT 48 ? D DT 49 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 DT OP3 O N N 112 DT P P N N 113 DT OP1 O N N 114 DT OP2 O N N 115 DT "O5'" O N N 116 DT "C5'" C N N 117 DT "C4'" C N R 118 DT "O4'" O N N 119 DT "C3'" C N S 120 DT "O3'" O N N 121 DT "C2'" C N N 122 DT "C1'" C N R 123 DT N1 N N N 124 DT C2 C N N 125 DT O2 O N N 126 DT N3 N N N 127 DT C4 C N N 128 DT O4 O N N 129 DT C5 C N N 130 DT C7 C N N 131 DT C6 C N N 132 DT HOP3 H N N 133 DT HOP2 H N N 134 DT "H5'" H N N 135 DT "H5''" H N N 136 DT "H4'" H N N 137 DT "H3'" H N N 138 DT "HO3'" H N N 139 DT "H2'" H N N 140 DT "H2''" H N N 141 DT "H1'" H N N 142 DT H3 H N N 143 DT H71 H N N 144 DT H72 H N N 145 DT H73 H N N 146 DT H6 H N N 147 GLN N N N N 148 GLN CA C N S 149 GLN C C N N 150 GLN O O N N 151 GLN CB C N N 152 GLN CG C N N 153 GLN CD C N N 154 GLN OE1 O N N 155 GLN NE2 N N N 156 GLN OXT O N N 157 GLN H H N N 158 GLN H2 H N N 159 GLN HA H N N 160 GLN HB2 H N N 161 GLN HB3 H N N 162 GLN HG2 H N N 163 GLN HG3 H N N 164 GLN HE21 H N N 165 GLN HE22 H N N 166 GLN HXT H N N 167 GLU N N N N 168 GLU CA C N S 169 GLU C C N N 170 GLU O O N N 171 GLU CB C N N 172 GLU CG C N N 173 GLU CD C N N 174 GLU OE1 O N N 175 GLU OE2 O N N 176 GLU OXT O N N 177 GLU H H N N 178 GLU H2 H N N 179 GLU HA H N N 180 GLU HB2 H N N 181 GLU HB3 H N N 182 GLU HG2 H N N 183 GLU HG3 H N N 184 GLU HE2 H N N 185 GLU HXT H N N 186 GLY N N N N 187 GLY CA C N N 188 GLY C C N N 189 GLY O O N N 190 GLY OXT O N N 191 GLY H H N N 192 GLY H2 H N N 193 GLY HA2 H N N 194 GLY HA3 H N N 195 GLY HXT H N N 196 HIS N N N N 197 HIS CA C N S 198 HIS C C N N 199 HIS O O N N 200 HIS CB C N N 201 HIS CG C Y N 202 HIS ND1 N Y N 203 HIS CD2 C Y N 204 HIS CE1 C Y N 205 HIS NE2 N Y N 206 HIS OXT O N N 207 HIS H H N N 208 HIS H2 H N N 209 HIS HA H N N 210 HIS HB2 H N N 211 HIS HB3 H N N 212 HIS HD1 H N N 213 HIS HD2 H N N 214 HIS HE1 H N N 215 HIS HE2 H N N 216 HIS HXT H N N 217 ILE N N N N 218 ILE CA C N S 219 ILE C C N N 220 ILE O O N N 221 ILE CB C N S 222 ILE CG1 C N N 223 ILE CG2 C N N 224 ILE CD1 C N N 225 ILE OXT O N N 226 ILE H H N N 227 ILE H2 H N N 228 ILE HA H N N 229 ILE HB H N N 230 ILE HG12 H N N 231 ILE HG13 H N N 232 ILE HG21 H N N 233 ILE HG22 H N N 234 ILE HG23 H N N 235 ILE HD11 H N N 236 ILE HD12 H N N 237 ILE HD13 H N N 238 ILE HXT H N N 239 LEU N N N N 240 LEU CA C N S 241 LEU C C N N 242 LEU O O N N 243 LEU CB C N N 244 LEU CG C N N 245 LEU CD1 C N N 246 LEU CD2 C N N 247 LEU OXT O N N 248 LEU H H N N 249 LEU H2 H N N 250 LEU HA H N N 251 LEU HB2 H N N 252 LEU HB3 H N N 253 LEU HG H N N 254 LEU HD11 H N N 255 LEU HD12 H N N 256 LEU HD13 H N N 257 LEU HD21 H N N 258 LEU HD22 H N N 259 LEU HD23 H N N 260 LEU HXT H N N 261 LYS N N N N 262 LYS CA C N S 263 LYS C C N N 264 LYS O O N N 265 LYS CB C N N 266 LYS CG C N N 267 LYS CD C N N 268 LYS CE C N N 269 LYS NZ N N N 270 LYS OXT O N N 271 LYS H H N N 272 LYS H2 H N N 273 LYS HA H N N 274 LYS HB2 H N N 275 LYS HB3 H N N 276 LYS HG2 H N N 277 LYS HG3 H N N 278 LYS HD2 H N N 279 LYS HD3 H N N 280 LYS HE2 H N N 281 LYS HE3 H N N 282 LYS HZ1 H N N 283 LYS HZ2 H N N 284 LYS HZ3 H N N 285 LYS HXT H N N 286 MAN C1 C N S 287 MAN C2 C N S 288 MAN C3 C N S 289 MAN C4 C N S 290 MAN C5 C N R 291 MAN C6 C N N 292 MAN O1 O N N 293 MAN O2 O N N 294 MAN O3 O N N 295 MAN O4 O N N 296 MAN O5 O N N 297 MAN O6 O N N 298 MAN H1 H N N 299 MAN H2 H N N 300 MAN H3 H N N 301 MAN H4 H N N 302 MAN H5 H N N 303 MAN H61 H N N 304 MAN H62 H N N 305 MAN HO1 H N N 306 MAN HO2 H N N 307 MAN HO3 H N N 308 MAN HO4 H N N 309 MAN HO6 H N N 310 MET N N N N 311 MET CA C N S 312 MET C C N N 313 MET O O N N 314 MET CB C N N 315 MET CG C N N 316 MET SD S N N 317 MET CE C N N 318 MET OXT O N N 319 MET H H N N 320 MET H2 H N N 321 MET HA H N N 322 MET HB2 H N N 323 MET HB3 H N N 324 MET HG2 H N N 325 MET HG3 H N N 326 MET HE1 H N N 327 MET HE2 H N N 328 MET HE3 H N N 329 MET HXT H N N 330 NAG C1 C N R 331 NAG C2 C N R 332 NAG C3 C N R 333 NAG C4 C N S 334 NAG C5 C N R 335 NAG C6 C N N 336 NAG C7 C N N 337 NAG C8 C N N 338 NAG N2 N N N 339 NAG O1 O N N 340 NAG O3 O N N 341 NAG O4 O N N 342 NAG O5 O N N 343 NAG O6 O N N 344 NAG O7 O N N 345 NAG H1 H N N 346 NAG H2 H N N 347 NAG H3 H N N 348 NAG H4 H N N 349 NAG H5 H N N 350 NAG H61 H N N 351 NAG H62 H N N 352 NAG H81 H N N 353 NAG H82 H N N 354 NAG H83 H N N 355 NAG HN2 H N N 356 NAG HO1 H N N 357 NAG HO3 H N N 358 NAG HO4 H N N 359 NAG HO6 H N N 360 PHE N N N N 361 PHE CA C N S 362 PHE C C N N 363 PHE O O N N 364 PHE CB C N N 365 PHE CG C Y N 366 PHE CD1 C Y N 367 PHE CD2 C Y N 368 PHE CE1 C Y N 369 PHE CE2 C Y N 370 PHE CZ C Y N 371 PHE OXT O N N 372 PHE H H N N 373 PHE H2 H N N 374 PHE HA H N N 375 PHE HB2 H N N 376 PHE HB3 H N N 377 PHE HD1 H N N 378 PHE HD2 H N N 379 PHE HE1 H N N 380 PHE HE2 H N N 381 PHE HZ H N N 382 PHE HXT H N N 383 PRO N N N N 384 PRO CA C N S 385 PRO C C N N 386 PRO O O N N 387 PRO CB C N N 388 PRO CG C N N 389 PRO CD C N N 390 PRO OXT O N N 391 PRO H H N N 392 PRO HA H N N 393 PRO HB2 H N N 394 PRO HB3 H N N 395 PRO HG2 H N N 396 PRO HG3 H N N 397 PRO HD2 H N N 398 PRO HD3 H N N 399 PRO HXT H N N 400 SER N N N N 401 SER CA C N S 402 SER C C N N 403 SER O O N N 404 SER CB C N N 405 SER OG O N N 406 SER OXT O N N 407 SER H H N N 408 SER H2 H N N 409 SER HA H N N 410 SER HB2 H N N 411 SER HB3 H N N 412 SER HG H N N 413 SER HXT H N N 414 THR N N N N 415 THR CA C N S 416 THR C C N N 417 THR O O N N 418 THR CB C N R 419 THR OG1 O N N 420 THR CG2 C N N 421 THR OXT O N N 422 THR H H N N 423 THR H2 H N N 424 THR HA H N N 425 THR HB H N N 426 THR HG1 H N N 427 THR HG21 H N N 428 THR HG22 H N N 429 THR HG23 H N N 430 THR HXT H N N 431 TRP N N N N 432 TRP CA C N S 433 TRP C C N N 434 TRP O O N N 435 TRP CB C N N 436 TRP CG C Y N 437 TRP CD1 C Y N 438 TRP CD2 C Y N 439 TRP NE1 N Y N 440 TRP CE2 C Y N 441 TRP CE3 C Y N 442 TRP CZ2 C Y N 443 TRP CZ3 C Y N 444 TRP CH2 C Y N 445 TRP OXT O N N 446 TRP H H N N 447 TRP H2 H N N 448 TRP HA H N N 449 TRP HB2 H N N 450 TRP HB3 H N N 451 TRP HD1 H N N 452 TRP HE1 H N N 453 TRP HE3 H N N 454 TRP HZ2 H N N 455 TRP HZ3 H N N 456 TRP HH2 H N N 457 TRP HXT H N N 458 TYR N N N N 459 TYR CA C N S 460 TYR C C N N 461 TYR O O N N 462 TYR CB C N N 463 TYR CG C Y N 464 TYR CD1 C Y N 465 TYR CD2 C Y N 466 TYR CE1 C Y N 467 TYR CE2 C Y N 468 TYR CZ C Y N 469 TYR OH O N N 470 TYR OXT O N N 471 TYR H H N N 472 TYR H2 H N N 473 TYR HA H N N 474 TYR HB2 H N N 475 TYR HB3 H N N 476 TYR HD1 H N N 477 TYR HD2 H N N 478 TYR HE1 H N N 479 TYR HE2 H N N 480 TYR HH H N N 481 TYR HXT H N N 482 VAL N N N N 483 VAL CA C N S 484 VAL C C N N 485 VAL O O N N 486 VAL CB C N N 487 VAL CG1 C N N 488 VAL CG2 C N N 489 VAL OXT O N N 490 VAL H H N N 491 VAL H2 H N N 492 VAL HA H N N 493 VAL HB H N N 494 VAL HG11 H N N 495 VAL HG12 H N N 496 VAL HG13 H N N 497 VAL HG21 H N N 498 VAL HG22 H N N 499 VAL HG23 H N N 500 VAL HXT H N N 501 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 DT OP3 P sing N N 107 DT OP3 HOP3 sing N N 108 DT P OP1 doub N N 109 DT P OP2 sing N N 110 DT P "O5'" sing N N 111 DT OP2 HOP2 sing N N 112 DT "O5'" "C5'" sing N N 113 DT "C5'" "C4'" sing N N 114 DT "C5'" "H5'" sing N N 115 DT "C5'" "H5''" sing N N 116 DT "C4'" "O4'" sing N N 117 DT "C4'" "C3'" sing N N 118 DT "C4'" "H4'" sing N N 119 DT "O4'" "C1'" sing N N 120 DT "C3'" "O3'" sing N N 121 DT "C3'" "C2'" sing N N 122 DT "C3'" "H3'" sing N N 123 DT "O3'" "HO3'" sing N N 124 DT "C2'" "C1'" sing N N 125 DT "C2'" "H2'" sing N N 126 DT "C2'" "H2''" sing N N 127 DT "C1'" N1 sing N N 128 DT "C1'" "H1'" sing N N 129 DT N1 C2 sing N N 130 DT N1 C6 sing N N 131 DT C2 O2 doub N N 132 DT C2 N3 sing N N 133 DT N3 C4 sing N N 134 DT N3 H3 sing N N 135 DT C4 O4 doub N N 136 DT C4 C5 sing N N 137 DT C5 C7 sing N N 138 DT C5 C6 doub N N 139 DT C7 H71 sing N N 140 DT C7 H72 sing N N 141 DT C7 H73 sing N N 142 DT C6 H6 sing N N 143 GLN N CA sing N N 144 GLN N H sing N N 145 GLN N H2 sing N N 146 GLN CA C sing N N 147 GLN CA CB sing N N 148 GLN CA HA sing N N 149 GLN C O doub N N 150 GLN C OXT sing N N 151 GLN CB CG sing N N 152 GLN CB HB2 sing N N 153 GLN CB HB3 sing N N 154 GLN CG CD sing N N 155 GLN CG HG2 sing N N 156 GLN CG HG3 sing N N 157 GLN CD OE1 doub N N 158 GLN CD NE2 sing N N 159 GLN NE2 HE21 sing N N 160 GLN NE2 HE22 sing N N 161 GLN OXT HXT sing N N 162 GLU N CA sing N N 163 GLU N H sing N N 164 GLU N H2 sing N N 165 GLU CA C sing N N 166 GLU CA CB sing N N 167 GLU CA HA sing N N 168 GLU C O doub N N 169 GLU C OXT sing N N 170 GLU CB CG sing N N 171 GLU CB HB2 sing N N 172 GLU CB HB3 sing N N 173 GLU CG CD sing N N 174 GLU CG HG2 sing N N 175 GLU CG HG3 sing N N 176 GLU CD OE1 doub N N 177 GLU CD OE2 sing N N 178 GLU OE2 HE2 sing N N 179 GLU OXT HXT sing N N 180 GLY N CA sing N N 181 GLY N H sing N N 182 GLY N H2 sing N N 183 GLY CA C sing N N 184 GLY CA HA2 sing N N 185 GLY CA HA3 sing N N 186 GLY C O doub N N 187 GLY C OXT sing N N 188 GLY OXT HXT sing N N 189 HIS N CA sing N N 190 HIS N H sing N N 191 HIS N H2 sing N N 192 HIS CA C sing N N 193 HIS CA CB sing N N 194 HIS CA HA sing N N 195 HIS C O doub N N 196 HIS C OXT sing N N 197 HIS CB CG sing N N 198 HIS CB HB2 sing N N 199 HIS CB HB3 sing N N 200 HIS CG ND1 sing Y N 201 HIS CG CD2 doub Y N 202 HIS ND1 CE1 doub Y N 203 HIS ND1 HD1 sing N N 204 HIS CD2 NE2 sing Y N 205 HIS CD2 HD2 sing N N 206 HIS CE1 NE2 sing Y N 207 HIS CE1 HE1 sing N N 208 HIS NE2 HE2 sing N N 209 HIS OXT HXT sing N N 210 ILE N CA sing N N 211 ILE N H sing N N 212 ILE N H2 sing N N 213 ILE CA C sing N N 214 ILE CA CB sing N N 215 ILE CA HA sing N N 216 ILE C O doub N N 217 ILE C OXT sing N N 218 ILE CB CG1 sing N N 219 ILE CB CG2 sing N N 220 ILE CB HB sing N N 221 ILE CG1 CD1 sing N N 222 ILE CG1 HG12 sing N N 223 ILE CG1 HG13 sing N N 224 ILE CG2 HG21 sing N N 225 ILE CG2 HG22 sing N N 226 ILE CG2 HG23 sing N N 227 ILE CD1 HD11 sing N N 228 ILE CD1 HD12 sing N N 229 ILE CD1 HD13 sing N N 230 ILE OXT HXT sing N N 231 LEU N CA sing N N 232 LEU N H sing N N 233 LEU N H2 sing N N 234 LEU CA C sing N N 235 LEU CA CB sing N N 236 LEU CA HA sing N N 237 LEU C O doub N N 238 LEU C OXT sing N N 239 LEU CB CG sing N N 240 LEU CB HB2 sing N N 241 LEU CB HB3 sing N N 242 LEU CG CD1 sing N N 243 LEU CG CD2 sing N N 244 LEU CG HG sing N N 245 LEU CD1 HD11 sing N N 246 LEU CD1 HD12 sing N N 247 LEU CD1 HD13 sing N N 248 LEU CD2 HD21 sing N N 249 LEU CD2 HD22 sing N N 250 LEU CD2 HD23 sing N N 251 LEU OXT HXT sing N N 252 LYS N CA sing N N 253 LYS N H sing N N 254 LYS N H2 sing N N 255 LYS CA C sing N N 256 LYS CA CB sing N N 257 LYS CA HA sing N N 258 LYS C O doub N N 259 LYS C OXT sing N N 260 LYS CB CG sing N N 261 LYS CB HB2 sing N N 262 LYS CB HB3 sing N N 263 LYS CG CD sing N N 264 LYS CG HG2 sing N N 265 LYS CG HG3 sing N N 266 LYS CD CE sing N N 267 LYS CD HD2 sing N N 268 LYS CD HD3 sing N N 269 LYS CE NZ sing N N 270 LYS CE HE2 sing N N 271 LYS CE HE3 sing N N 272 LYS NZ HZ1 sing N N 273 LYS NZ HZ2 sing N N 274 LYS NZ HZ3 sing N N 275 LYS OXT HXT sing N N 276 MAN C1 C2 sing N N 277 MAN C1 O1 sing N N 278 MAN C1 O5 sing N N 279 MAN C1 H1 sing N N 280 MAN C2 C3 sing N N 281 MAN C2 O2 sing N N 282 MAN C2 H2 sing N N 283 MAN C3 C4 sing N N 284 MAN C3 O3 sing N N 285 MAN C3 H3 sing N N 286 MAN C4 C5 sing N N 287 MAN C4 O4 sing N N 288 MAN C4 H4 sing N N 289 MAN C5 C6 sing N N 290 MAN C5 O5 sing N N 291 MAN C5 H5 sing N N 292 MAN C6 O6 sing N N 293 MAN C6 H61 sing N N 294 MAN C6 H62 sing N N 295 MAN O1 HO1 sing N N 296 MAN O2 HO2 sing N N 297 MAN O3 HO3 sing N N 298 MAN O4 HO4 sing N N 299 MAN O6 HO6 sing N N 300 MET N CA sing N N 301 MET N H sing N N 302 MET N H2 sing N N 303 MET CA C sing N N 304 MET CA CB sing N N 305 MET CA HA sing N N 306 MET C O doub N N 307 MET C OXT sing N N 308 MET CB CG sing N N 309 MET CB HB2 sing N N 310 MET CB HB3 sing N N 311 MET CG SD sing N N 312 MET CG HG2 sing N N 313 MET CG HG3 sing N N 314 MET SD CE sing N N 315 MET CE HE1 sing N N 316 MET CE HE2 sing N N 317 MET CE HE3 sing N N 318 MET OXT HXT sing N N 319 NAG C1 C2 sing N N 320 NAG C1 O1 sing N N 321 NAG C1 O5 sing N N 322 NAG C1 H1 sing N N 323 NAG C2 C3 sing N N 324 NAG C2 N2 sing N N 325 NAG C2 H2 sing N N 326 NAG C3 C4 sing N N 327 NAG C3 O3 sing N N 328 NAG C3 H3 sing N N 329 NAG C4 C5 sing N N 330 NAG C4 O4 sing N N 331 NAG C4 H4 sing N N 332 NAG C5 C6 sing N N 333 NAG C5 O5 sing N N 334 NAG C5 H5 sing N N 335 NAG C6 O6 sing N N 336 NAG C6 H61 sing N N 337 NAG C6 H62 sing N N 338 NAG C7 C8 sing N N 339 NAG C7 N2 sing N N 340 NAG C7 O7 doub N N 341 NAG C8 H81 sing N N 342 NAG C8 H82 sing N N 343 NAG C8 H83 sing N N 344 NAG N2 HN2 sing N N 345 NAG O1 HO1 sing N N 346 NAG O3 HO3 sing N N 347 NAG O4 HO4 sing N N 348 NAG O6 HO6 sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TRP N CA sing N N 419 TRP N H sing N N 420 TRP N H2 sing N N 421 TRP CA C sing N N 422 TRP CA CB sing N N 423 TRP CA HA sing N N 424 TRP C O doub N N 425 TRP C OXT sing N N 426 TRP CB CG sing N N 427 TRP CB HB2 sing N N 428 TRP CB HB3 sing N N 429 TRP CG CD1 doub Y N 430 TRP CG CD2 sing Y N 431 TRP CD1 NE1 sing Y N 432 TRP CD1 HD1 sing N N 433 TRP CD2 CE2 doub Y N 434 TRP CD2 CE3 sing Y N 435 TRP NE1 CE2 sing Y N 436 TRP NE1 HE1 sing N N 437 TRP CE2 CZ2 sing Y N 438 TRP CE3 CZ3 doub Y N 439 TRP CE3 HE3 sing N N 440 TRP CZ2 CH2 doub Y N 441 TRP CZ2 HZ2 sing N N 442 TRP CZ3 CH2 sing Y N 443 TRP CZ3 HZ3 sing N N 444 TRP CH2 HH2 sing N N 445 TRP OXT HXT sing N N 446 TYR N CA sing N N 447 TYR N H sing N N 448 TYR N H2 sing N N 449 TYR CA C sing N N 450 TYR CA CB sing N N 451 TYR CA HA sing N N 452 TYR C O doub N N 453 TYR C OXT sing N N 454 TYR CB CG sing N N 455 TYR CB HB2 sing N N 456 TYR CB HB3 sing N N 457 TYR CG CD1 doub Y N 458 TYR CG CD2 sing Y N 459 TYR CD1 CE1 sing Y N 460 TYR CD1 HD1 sing N N 461 TYR CD2 CE2 doub Y N 462 TYR CD2 HD2 sing N N 463 TYR CE1 CZ doub Y N 464 TYR CE1 HE1 sing N N 465 TYR CE2 CZ sing Y N 466 TYR CE2 HE2 sing N N 467 TYR CZ OH sing N N 468 TYR OH HH sing N N 469 TYR OXT HXT sing N N 470 VAL N CA sing N N 471 VAL N H sing N N 472 VAL N H2 sing N N 473 VAL CA C sing N N 474 VAL CA CB sing N N 475 VAL CA HA sing N N 476 VAL C O doub N N 477 VAL C OXT sing N N 478 VAL CB CG1 sing N N 479 VAL CB CG2 sing N N 480 VAL CB HB sing N N 481 VAL CG1 HG11 sing N N 482 VAL CG1 HG12 sing N N 483 VAL CG1 HG13 sing N N 484 VAL CG2 HG21 sing N N 485 VAL CG2 HG22 sing N N 486 VAL CG2 HG23 sing N N 487 VAL OXT HXT sing N N 488 # _em_admin.current_status REL _em_admin.deposition_date 2025-06-04 _em_admin.deposition_site PDBJ _em_admin.entry_id 9VBH _em_admin.last_update 2025-12-24 _em_admin.map_release_date 2025-12-24 _em_admin.title 'Cryo-EM structure of human PLD3 bound to ssDNA (poly(T))' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_molwt.entity_assembly_id _em_entity_assembly_molwt.experimental_flag _em_entity_assembly_molwt.id _em_entity_assembly_molwt.units _em_entity_assembly_molwt.value 1 NO 1 ? ? 2 ? 2 ? ? # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 2 1 9606 'Homo sapiens' ? ? ? ? ? ? ? 3 2 32630 'synthetic construct' ? ? ? ? ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 2 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_entity_assembly_synthetic.cell ? _em_entity_assembly_synthetic.cellular_location ? _em_entity_assembly_synthetic.entity_assembly_id 3 _em_entity_assembly_synthetic.id 1 _em_entity_assembly_synthetic.ncbi_tax_id 32630 _em_entity_assembly_synthetic.organ ? _em_entity_assembly_synthetic.organelle ? _em_entity_assembly_synthetic.organism 'synthetic construct' _em_entity_assembly_synthetic.strain ? _em_entity_assembly_synthetic.tissue ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 48 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 22K06110 1 'Japan Society for the Promotion of Science (JSPS)' Japan 25K09523 2 'Japan Science and Technology' Japan JPMJCR21E4 3 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n 5 NAG 1 n 5 NAG 2 n 5 BMA 3 n 5 MAN 4 n 5 MAN 5 n # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9VBH _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #