HEADER HYDROLASE 10-JUN-25 9VEW TITLE SIRT2 STRUCTURE IN COMPLEX WITH H3K18MYR PEPTIDE AND NATIVE NAD: PRE- TITLE 2 CATALYSIS STATE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NAD-DEPENDENT PROTEIN DEFATTY-ACYLASE SIRTUIN-2,REGULATORY COMPND 5 PROTEIN SIR2 HOMOLOG 2,SIR2-LIKE PROTEIN 2; COMPND 6 EC: 2.3.1.286,2.3.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3.1; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 12 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 13 H3/L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2, SIR2L, SIR2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS DEACETYLASE, CELL CYCLE REGULATION, METABOLIC REGULATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHANG,Q.HAO REVDAT 3 12-NOV-25 9VEW 1 JRNL REVDAT 2 01-OCT-25 9VEW 1 JRNL REVDAT 1 24-SEP-25 9VEW 0 JRNL AUTH N.ZHANG,K.C.POW,L.CHEN,Q.HAO JRNL TITL STRUCTURAL BASIS OF SIRT2 PRE-CATALYSIS NAD + BINDING JRNL TITL 2 DYNAMICS AND MECHANISM. JRNL REF RSC CHEM BIOL V. 6 1749 2025 JRNL REFN ESSN 2633-0679 JRNL PMID 40963517 JRNL DOI 10.1039/D5CB00169B REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.100) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 8784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.907 REMARK 3 FREE R VALUE TEST SET COUNT : 431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.73300 REMARK 3 B22 (A**2) : 3.43500 REMARK 3 B33 (A**2) : -1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.29300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2249 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3303 ; 1.643 ; 1.830 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5220 ; 0.559 ; 1.735 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 7.701 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 8.177 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;15.241 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2798 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 533 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 600 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 36 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1180 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.226 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.101 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 1.962 ; 2.716 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1225 ; 1.962 ; 2.716 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1533 ; 3.152 ; 4.864 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1534 ; 3.151 ; 4.863 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 2.235 ; 2.954 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1215 ; 2.234 ; 2.953 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1770 ; 3.455 ; 5.343 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1771 ; 3.454 ; 5.342 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 606 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5225 6.3448 21.4107 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0289 REMARK 3 T33: 0.1115 T12: -0.0029 REMARK 3 T13: -0.0073 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.7102 L22: 2.2738 REMARK 3 L33: 3.2132 L12: -0.1889 REMARK 3 L13: -0.3363 L23: -0.0964 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.1690 S13: -0.0752 REMARK 3 S21: -0.1883 S22: -0.0078 S23: 0.0645 REMARK 3 S31: -0.0316 S32: -0.1945 S33: 0.0173 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9189 -5.1864 10.1903 REMARK 3 T TENSOR REMARK 3 T11: 0.6504 T22: 0.6324 REMARK 3 T33: 0.7179 T12: 0.1372 REMARK 3 T13: 0.2191 T23: 0.1172 REMARK 3 L TENSOR REMARK 3 L11: 2.2908 L22: 12.6540 REMARK 3 L33: 1.0757 L12: 5.3510 REMARK 3 L13: 1.3337 L23: 3.3263 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.2645 S13: 0.0611 REMARK 3 S21: 0.1155 S22: -0.4173 S23: 0.4177 REMARK 3 S31: 0.3316 S32: 0.0284 S33: 0.4303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9VEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300060550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8852 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 55.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X3O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 8.0, 25% PEG 2000MME, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.30400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 105 REMARK 465 ASN A 106 REMARK 465 LEU A 107 REMARK 465 GLU A 108 REMARK 465 HIS A 111 REMARK 465 LEU A 112 REMARK 465 PRO A 113 REMARK 465 TYR A 114 REMARK 465 PRO A 115 REMARK 465 MET A 301 REMARK 465 GLY A 302 REMARK 465 LEU A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 SER A 98 OG REMARK 470 SER A 100 OG REMARK 470 TYR A 104 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 HIS A 202 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 ILE A 213 CG1 CG2 CD1 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 VAL A 217 CG1 CG2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 ILE A 300 CG1 CG2 CD1 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 GLN A 355 CG CD OE1 NE2 REMARK 470 ARG C 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 253 O HOH A 701 1.88 REMARK 500 OG1 THR A 101 O HOH A 702 2.14 REMARK 500 O GLY A 102 O HOH A 703 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 103 49.13 -89.07 REMARK 500 CYS A 200 -68.57 -122.70 REMARK 500 GLU A 216 21.26 80.57 REMARK 500 ARG A 316 -6.03 -143.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 108.5 REMARK 620 3 CYS A 221 SG 133.6 105.3 REMARK 620 4 CYS A 224 SG 98.1 98.7 107.2 REMARK 620 N 1 2 3 DBREF 9VEW A 52 355 UNP Q8IXJ6 SIR2_HUMAN 52 355 DBREF 9VEW C 6 12 UNP P68431 H31_HUMAN 16 22 SEQRES 1 A 304 GLY SER GLN LYS GLU ARG LEU LEU ASP GLU LEU THR LEU SEQRES 2 A 304 GLU GLY VAL ALA ARG TYR MET GLN SER GLU ARG CYS ARG SEQRES 3 A 304 ARG VAL ILE CYS LEU VAL GLY ALA GLY ILE SER THR SER SEQRES 4 A 304 ALA GLY ILE PRO ASP PHE ARG SER PRO SER THR GLY LEU SEQRES 5 A 304 TYR ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR PRO GLU SEQRES 6 A 304 ALA ILE PHE GLU ILE SER TYR PHE LYS LYS HIS PRO GLU SEQRES 7 A 304 PRO PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO GLY GLN SEQRES 8 A 304 PHE LYS PRO THR ILE CYS HIS TYR PHE MET ARG LEU LEU SEQRES 9 A 304 LYS ASP LYS GLY LEU LEU LEU ARG CYS TYR THR GLN ASN SEQRES 10 A 304 ILE ASP THR LEU GLU ARG ILE ALA GLY LEU GLU GLN GLU SEQRES 11 A 304 ASP LEU VAL GLU ALA HIS GLY THR PHE TYR THR SER HIS SEQRES 12 A 304 CYS VAL SER ALA SER CYS ARG HIS GLU TYR PRO LEU SER SEQRES 13 A 304 TRP MET LYS GLU LYS ILE PHE SER GLU VAL THR PRO LYS SEQRES 14 A 304 CYS GLU ASP CYS GLN SER LEU VAL LYS PRO ASP ILE VAL SEQRES 15 A 304 PHE PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SER CYS SEQRES 16 A 304 MET GLN SER ASP PHE LEU LYS VAL ASP LEU LEU LEU VAL SEQRES 17 A 304 MET GLY THR SER LEU GLN VAL GLN PRO PHE ALA SER LEU SEQRES 18 A 304 ILE SER LYS ALA PRO LEU SER THR PRO ARG LEU LEU ILE SEQRES 19 A 304 ASN LYS GLU LYS ALA GLY GLN SER ASP PRO PHE LEU GLY SEQRES 20 A 304 MET ILE MET GLY LEU GLY GLY GLY MET ASP PHE ASP SER SEQRES 21 A 304 LYS LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS SEQRES 22 A 304 ASP GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP SEQRES 23 A 304 LYS LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SEQRES 24 A 304 SER ILE ASP ALA GLN SEQRES 1 C 7 ALA PRO ARG LYS GLN LEU ALA HET NAD A 601 44 HET EDO A 602 4 HET EDO A 603 4 HET GOL A 604 6 HET ZN A 605 1 HET MYR C 101 15 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM MYR MYRISTIC ACID HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 GOL C3 H8 O3 FORMUL 7 ZN ZN 2+ FORMUL 8 MYR C14 H28 O2 FORMUL 9 HOH *32(H2 O) HELIX 1 AA1 THR A 63 SER A 73 1 11 HELIX 2 AA2 ALA A 85 GLY A 92 5 8 HELIX 3 AA3 GLU A 116 PHE A 119 5 4 HELIX 4 AA4 GLU A 120 HIS A 127 1 8 HELIX 5 AA5 PRO A 128 LEU A 138 1 11 HELIX 6 AA6 THR A 146 LYS A 158 1 13 HELIX 7 AA7 THR A 171 ALA A 176 1 6 HELIX 8 AA8 GLU A 179 GLU A 181 5 3 HELIX 9 AA9 LEU A 206 GLU A 216 1 11 HELIX 10 AB1 PRO A 240 VAL A 254 1 15 HELIX 11 AB2 PRO A 268 LYS A 275 5 8 HELIX 12 AB3 GLU A 323 LEU A 335 1 13 HELIX 13 AB4 TRP A 337 ALA A 354 1 18 SHEET 1 AA1 6 LEU A 183 GLU A 185 0 SHEET 2 AA1 6 LEU A 161 THR A 166 1 N THR A 166 O VAL A 184 SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 AA1 6 LEU A 256 MET A 260 1 O LEU A 258 N ILE A 80 SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O TRP A 320 N LEU A 284 SHEET 1 AA2 3 GLU A 203 PRO A 205 0 SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192 LINK NZ LYS C 9 C1 MYR C 101 1555 1555 1.42 LINK SG CYS A 195 ZN ZN A 605 1555 1555 2.41 LINK SG CYS A 200 ZN ZN A 605 1555 1555 2.45 LINK SG CYS A 221 ZN ZN A 605 1555 1555 2.27 LINK SG CYS A 224 ZN ZN A 605 1555 1555 2.42 CISPEP 1 GLN A 267 PRO A 268 0 3.80 CRYST1 37.919 76.608 55.707 90.00 97.36 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026372 0.000000 0.003408 0.00000 SCALE2 0.000000 0.013053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018100 0.00000 CONECT 1030 2374 CONECT 1060 2374 CONECT 1220 2374 CONECT 1243 2374 CONECT 2292 2375 CONECT 2316 2317 2318 2319 2338 CONECT 2317 2316 CONECT 2318 2316 CONECT 2319 2316 2320 CONECT 2320 2319 2321 CONECT 2321 2320 2322 2323 CONECT 2322 2321 2327 CONECT 2323 2321 2324 2325 CONECT 2324 2323 CONECT 2325 2323 2326 2327 CONECT 2326 2325 CONECT 2327 2322 2325 2328 CONECT 2328 2327 2329 2337 CONECT 2329 2328 2330 CONECT 2330 2329 2331 CONECT 2331 2330 2332 2337 CONECT 2332 2331 2333 2334 CONECT 2333 2332 CONECT 2334 2332 2335 CONECT 2335 2334 2336 CONECT 2336 2335 2337 CONECT 2337 2328 2331 2336 CONECT 2338 2316 2339 CONECT 2339 2338 2340 2341 2342 CONECT 2340 2339 CONECT 2341 2339 CONECT 2342 2339 2343 CONECT 2343 2342 2344 CONECT 2344 2343 2345 2346 CONECT 2345 2344 2350 CONECT 2346 2344 2347 2348 CONECT 2347 2346 CONECT 2348 2346 2349 2350 CONECT 2349 2348 CONECT 2350 2345 2348 2351 CONECT 2351 2350 2352 2359 CONECT 2352 2351 2353 CONECT 2353 2352 2354 2357 CONECT 2354 2353 2355 2356 CONECT 2355 2354 CONECT 2356 2354 CONECT 2357 2353 2358 CONECT 2358 2357 2359 CONECT 2359 2351 2358 CONECT 2360 2361 2362 CONECT 2361 2360 CONECT 2362 2360 2363 CONECT 2363 2362 CONECT 2364 2365 2366 CONECT 2365 2364 CONECT 2366 2364 2367 CONECT 2367 2366 CONECT 2368 2369 2370 CONECT 2369 2368 CONECT 2370 2368 2371 2372 CONECT 2371 2370 CONECT 2372 2370 2373 CONECT 2373 2372 CONECT 2374 1030 1060 1220 1243 CONECT 2375 2292 2376 2377 CONECT 2376 2375 CONECT 2377 2375 2378 CONECT 2378 2377 2379 CONECT 2379 2378 2380 CONECT 2380 2379 2381 CONECT 2381 2380 2382 CONECT 2382 2381 2383 CONECT 2383 2382 2384 CONECT 2384 2383 2385 CONECT 2385 2384 2386 CONECT 2386 2385 2387 CONECT 2387 2386 2388 CONECT 2388 2387 2389 CONECT 2389 2388 MASTER 363 0 6 13 9 0 0 6 2367 2 79 25 END