data_9VKK # _entry.id 9VKK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9VKK pdb_00009vkk 10.2210/pdb9vkk/pdb WWPDB D_1300060827 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-04-01 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9VKK _pdbx_database_status.recvd_initial_deposition_date 2025-06-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email zhangleike@wh.iov.cn _pdbx_contact_author.name_first Leike _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2593-2571 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, L.' 1 ? 'Ye, Z.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Plos Pathog.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1553-7374 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first e1014051 _citation.page_last e1014051 _citation.title ;A clinical SARS-CoV-2 Mpro inhibitor blocks replication of multiple enteroviruses and confers oral in vivo protection in animal models. ; _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1014051 _citation.pdbx_database_id_PubMed 41811867 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ye, Z.' 1 ? primary 'Dai, W.' 2 ? primary 'Zhang, S.' 3 ? primary 'Xiang, Y.' 4 ? primary 'Wang, J.' 5 ? primary 'Zhang, Y.' 6 ? primary 'Cao, W.' 7 ? primary 'Neyts, J.' 8 ? primary 'Li, Z.' 9 ? primary 'Feng, F.' 10 ? primary 'Xiao, G.' 11 ? primary 'Liu, H.' 12 ? primary 'Cao, J.' 13 ? primary 'Zhang, L.K.' 14 0000-0002-2593-2571 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protease 3C' 20089.061 1 3.4.22.28 ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn ;~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide ; 452.546 1 ? ? ? ? 4 water nat water 18.015 101 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Picornain 3C,P3C' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPSLDFALSLLRRNIRQAQTDQGHFTMLGVRDRLAILPRHSQPGKTIWVEHKLINVLDAVELVDEQGVNLELTLVTLDT NEKFRDITKFIPEVITGASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIG IHIGGNGRQGFCAGLKRSYFASE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPSLDFALSLLRRNIRQAQTDQGHFTMLGVRDRLAILPRHSQPGKTIWVEHKLINVLDAVELVDEQGVNLELTLVTLDT NEKFRDITKFIPEVITGASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKIIG IHIGGNGRQGFCAGLKRSYFASE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 ;~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide ; FHR 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 SER n 1 5 LEU n 1 6 ASP n 1 7 PHE n 1 8 ALA n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 LEU n 1 13 ARG n 1 14 ARG n 1 15 ASN n 1 16 ILE n 1 17 ARG n 1 18 GLN n 1 19 ALA n 1 20 GLN n 1 21 THR n 1 22 ASP n 1 23 GLN n 1 24 GLY n 1 25 HIS n 1 26 PHE n 1 27 THR n 1 28 MET n 1 29 LEU n 1 30 GLY n 1 31 VAL n 1 32 ARG n 1 33 ASP n 1 34 ARG n 1 35 LEU n 1 36 ALA n 1 37 ILE n 1 38 LEU n 1 39 PRO n 1 40 ARG n 1 41 HIS n 1 42 SER n 1 43 GLN n 1 44 PRO n 1 45 GLY n 1 46 LYS n 1 47 THR n 1 48 ILE n 1 49 TRP n 1 50 VAL n 1 51 GLU n 1 52 HIS n 1 53 LYS n 1 54 LEU n 1 55 ILE n 1 56 ASN n 1 57 VAL n 1 58 LEU n 1 59 ASP n 1 60 ALA n 1 61 VAL n 1 62 GLU n 1 63 LEU n 1 64 VAL n 1 65 ASP n 1 66 GLU n 1 67 GLN n 1 68 GLY n 1 69 VAL n 1 70 ASN n 1 71 LEU n 1 72 GLU n 1 73 LEU n 1 74 THR n 1 75 LEU n 1 76 VAL n 1 77 THR n 1 78 LEU n 1 79 ASP n 1 80 THR n 1 81 ASN n 1 82 GLU n 1 83 LYS n 1 84 PHE n 1 85 ARG n 1 86 ASP n 1 87 ILE n 1 88 THR n 1 89 LYS n 1 90 PHE n 1 91 ILE n 1 92 PRO n 1 93 GLU n 1 94 VAL n 1 95 ILE n 1 96 THR n 1 97 GLY n 1 98 ALA n 1 99 SER n 1 100 ASP n 1 101 ALA n 1 102 THR n 1 103 LEU n 1 104 VAL n 1 105 ILE n 1 106 ASN n 1 107 THR n 1 108 GLU n 1 109 HIS n 1 110 MET n 1 111 PRO n 1 112 SER n 1 113 MET n 1 114 PHE n 1 115 VAL n 1 116 PRO n 1 117 VAL n 1 118 GLY n 1 119 ASP n 1 120 VAL n 1 121 VAL n 1 122 GLN n 1 123 TYR n 1 124 GLY n 1 125 PHE n 1 126 LEU n 1 127 ASN n 1 128 LEU n 1 129 SER n 1 130 GLY n 1 131 LYS n 1 132 PRO n 1 133 THR n 1 134 HIS n 1 135 ARG n 1 136 THR n 1 137 MET n 1 138 MET n 1 139 TYR n 1 140 ASN n 1 141 PHE n 1 142 PRO n 1 143 THR n 1 144 LYS n 1 145 ALA n 1 146 GLY n 1 147 GLN n 1 148 CYS n 1 149 GLY n 1 150 GLY n 1 151 VAL n 1 152 VAL n 1 153 THR n 1 154 SER n 1 155 VAL n 1 156 GLY n 1 157 LYS n 1 158 ILE n 1 159 ILE n 1 160 GLY n 1 161 ILE n 1 162 HIS n 1 163 ILE n 1 164 GLY n 1 165 GLY n 1 166 ASN n 1 167 GLY n 1 168 ARG n 1 169 GLN n 1 170 GLY n 1 171 PHE n 1 172 CYS n 1 173 ALA n 1 174 GLY n 1 175 LEU n 1 176 LYS n 1 177 ARG n 1 178 SER n 1 179 TYR n 1 180 PHE n 1 181 ALA n 1 182 SER n 1 183 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 183 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human enterovirus 71 (strain BRCR)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 69153 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FHR peptide-like . ;~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide ; ? 'C25 H32 N4 O4' 452.546 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 ASP 6 5 5 ASP ASP A . n A 1 7 PHE 7 6 6 PHE PHE A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 ARG 13 12 12 ARG ARG A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 ASN 15 14 14 ASN ASN A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 GLN 18 17 17 GLN GLN A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 ASP 22 21 21 ASP ASP A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 HIS 25 24 24 HIS HIS A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 THR 27 26 26 THR THR A . n A 1 28 MET 28 27 27 MET MET A . n A 1 29 LEU 29 28 28 LEU LEU A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 ARG 34 33 33 ARG ARG A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 HIS 41 40 40 HIS HIS A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 PRO 44 43 43 PRO PRO A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 LYS 46 45 45 LYS LYS A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 TRP 49 48 48 TRP TRP A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 HIS 52 51 51 HIS HIS A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ILE 55 54 54 ILE ILE A . n A 1 56 ASN 56 55 55 ASN ASN A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 GLN 67 66 66 GLN GLN A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 VAL 69 68 68 VAL VAL A . n A 1 70 ASN 70 69 69 ASN ASN A . n A 1 71 LEU 71 70 70 LEU LEU A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 ASN 81 80 80 ASN ASN A . n A 1 82 GLU 82 81 81 GLU GLU A . n A 1 83 LYS 83 82 82 LYS LYS A . n A 1 84 PHE 84 83 83 PHE PHE A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 ILE 87 86 86 ILE ILE A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 ILE 91 90 90 ILE ILE A . n A 1 92 PRO 92 91 91 PRO PRO A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 VAL 94 93 93 VAL VAL A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 THR 96 95 95 THR THR A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 SER 99 98 98 SER SER A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 THR 102 101 101 THR THR A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 ASN 106 105 105 ASN ASN A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 HIS 109 108 108 HIS HIS A . n A 1 110 MET 110 109 109 MET MET A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 MET 113 112 112 MET MET A . n A 1 114 PHE 114 113 113 PHE PHE A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 PRO 116 115 115 PRO PRO A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 ASP 119 118 118 ASP ASP A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 GLN 122 121 121 GLN GLN A . n A 1 123 TYR 123 122 122 TYR TYR A . n A 1 124 GLY 124 123 123 GLY GLY A . n A 1 125 PHE 125 124 124 PHE PHE A . n A 1 126 LEU 126 125 125 LEU LEU A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 SER 129 128 128 SER SER A . n A 1 130 GLY 130 129 129 GLY GLY A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 PRO 132 131 131 PRO PRO A . n A 1 133 THR 133 132 132 THR THR A . n A 1 134 HIS 134 133 133 HIS HIS A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 THR 136 135 135 THR THR A . n A 1 137 MET 137 136 136 MET MET A . n A 1 138 MET 138 137 137 MET MET A . n A 1 139 TYR 139 138 138 TYR TYR A . n A 1 140 ASN 140 139 139 ASN ASN A . n A 1 141 PHE 141 140 140 PHE PHE A . n A 1 142 PRO 142 141 141 PRO PRO A . n A 1 143 THR 143 142 142 THR THR A . n A 1 144 LYS 144 143 143 LYS LYS A . n A 1 145 ALA 145 144 144 ALA ALA A . n A 1 146 GLY 146 145 145 GLY GLY A . n A 1 147 GLN 147 146 146 GLN GLN A . n A 1 148 CYS 148 147 147 CYS CYS A . n A 1 149 GLY 149 148 148 GLY GLY A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 VAL 152 151 151 VAL VAL A . n A 1 153 THR 153 152 152 THR THR A . n A 1 154 SER 154 153 153 SER SER A . n A 1 155 VAL 155 154 154 VAL VAL A . n A 1 156 GLY 156 155 155 GLY GLY A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 ILE 158 157 157 ILE ILE A . n A 1 159 ILE 159 158 158 ILE ILE A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 ILE 161 160 160 ILE ILE A . n A 1 162 HIS 162 161 161 HIS HIS A . n A 1 163 ILE 163 162 162 ILE ILE A . n A 1 164 GLY 164 163 163 GLY GLY A . n A 1 165 GLY 165 164 164 GLY GLY A . n A 1 166 ASN 166 165 165 ASN ASN A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 ARG 168 167 167 ARG ARG A . n A 1 169 GLN 169 168 168 GLN GLN A . n A 1 170 GLY 170 169 169 GLY GLY A . n A 1 171 PHE 171 170 170 PHE PHE A . n A 1 172 CYS 172 171 171 CYS CYS A . n A 1 173 ALA 173 172 172 ALA ALA A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 LYS 176 175 175 LYS LYS A . n A 1 177 ARG 177 176 176 ARG ARG A . n A 1 178 SER 178 177 177 SER SER A . n A 1 179 TYR 179 178 178 TYR TYR A . n A 1 180 PHE 180 179 179 PHE PHE A . n A 1 181 ALA 181 180 180 ALA ALA A . n A 1 182 SER 182 181 181 SER SER A . n A 1 183 GLU 183 182 ? ? ? A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 FHR ? ? FHR ? ? 'SUBJECT OF INVESTIGATION' ? 2 GOL ? ? GOL ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 201 202 GOL GOL A . C 3 FHR 1 202 201 FHR FHR A . D 4 HOH 1 301 75 HOH HOH A . D 4 HOH 2 302 56 HOH HOH A . D 4 HOH 3 303 80 HOH HOH A . D 4 HOH 4 304 3 HOH HOH A . D 4 HOH 5 305 70 HOH HOH A . D 4 HOH 6 306 12 HOH HOH A . D 4 HOH 7 307 82 HOH HOH A . D 4 HOH 8 308 6 HOH HOH A . D 4 HOH 9 309 21 HOH HOH A . D 4 HOH 10 310 84 HOH HOH A . D 4 HOH 11 311 14 HOH HOH A . D 4 HOH 12 312 9 HOH HOH A . D 4 HOH 13 313 15 HOH HOH A . D 4 HOH 14 314 44 HOH HOH A . D 4 HOH 15 315 1 HOH HOH A . D 4 HOH 16 316 11 HOH HOH A . D 4 HOH 17 317 86 HOH HOH A . D 4 HOH 18 318 28 HOH HOH A . D 4 HOH 19 319 85 HOH HOH A . D 4 HOH 20 320 30 HOH HOH A . D 4 HOH 21 321 17 HOH HOH A . D 4 HOH 22 322 55 HOH HOH A . D 4 HOH 23 323 79 HOH HOH A . D 4 HOH 24 324 4 HOH HOH A . D 4 HOH 25 325 50 HOH HOH A . D 4 HOH 26 326 88 HOH HOH A . D 4 HOH 27 327 68 HOH HOH A . D 4 HOH 28 328 24 HOH HOH A . D 4 HOH 29 329 8 HOH HOH A . D 4 HOH 30 330 74 HOH HOH A . D 4 HOH 31 331 111 HOH HOH A . D 4 HOH 32 332 45 HOH HOH A . D 4 HOH 33 333 23 HOH HOH A . D 4 HOH 34 334 5 HOH HOH A . D 4 HOH 35 335 10 HOH HOH A . D 4 HOH 36 336 7 HOH HOH A . D 4 HOH 37 337 52 HOH HOH A . D 4 HOH 38 338 39 HOH HOH A . D 4 HOH 39 339 20 HOH HOH A . D 4 HOH 40 340 22 HOH HOH A . D 4 HOH 41 341 109 HOH HOH A . D 4 HOH 42 342 42 HOH HOH A . D 4 HOH 43 343 59 HOH HOH A . D 4 HOH 44 344 36 HOH HOH A . D 4 HOH 45 345 57 HOH HOH A . D 4 HOH 46 346 101 HOH HOH A . D 4 HOH 47 347 63 HOH HOH A . D 4 HOH 48 348 29 HOH HOH A . D 4 HOH 49 349 2 HOH HOH A . D 4 HOH 50 350 54 HOH HOH A . D 4 HOH 51 351 103 HOH HOH A . D 4 HOH 52 352 60 HOH HOH A . D 4 HOH 53 353 98 HOH HOH A . D 4 HOH 54 354 96 HOH HOH A . D 4 HOH 55 355 19 HOH HOH A . D 4 HOH 56 356 40 HOH HOH A . D 4 HOH 57 357 16 HOH HOH A . D 4 HOH 58 358 65 HOH HOH A . D 4 HOH 59 359 13 HOH HOH A . D 4 HOH 60 360 47 HOH HOH A . D 4 HOH 61 361 34 HOH HOH A . D 4 HOH 62 362 18 HOH HOH A . D 4 HOH 63 363 35 HOH HOH A . D 4 HOH 64 364 78 HOH HOH A . D 4 HOH 65 365 26 HOH HOH A . D 4 HOH 66 366 53 HOH HOH A . D 4 HOH 67 367 99 HOH HOH A . D 4 HOH 68 368 73 HOH HOH A . D 4 HOH 69 369 38 HOH HOH A . D 4 HOH 70 370 25 HOH HOH A . D 4 HOH 71 371 81 HOH HOH A . D 4 HOH 72 372 41 HOH HOH A . D 4 HOH 73 373 95 HOH HOH A . D 4 HOH 74 374 91 HOH HOH A . D 4 HOH 75 375 32 HOH HOH A . D 4 HOH 76 376 71 HOH HOH A . D 4 HOH 77 377 89 HOH HOH A . D 4 HOH 78 378 27 HOH HOH A . D 4 HOH 79 379 106 HOH HOH A . D 4 HOH 80 380 97 HOH HOH A . D 4 HOH 81 381 87 HOH HOH A . D 4 HOH 82 382 72 HOH HOH A . D 4 HOH 83 383 104 HOH HOH A . D 4 HOH 84 384 43 HOH HOH A . D 4 HOH 85 385 62 HOH HOH A . D 4 HOH 86 386 69 HOH HOH A . D 4 HOH 87 387 46 HOH HOH A . D 4 HOH 88 388 66 HOH HOH A . D 4 HOH 89 389 107 HOH HOH A . D 4 HOH 90 390 64 HOH HOH A . D 4 HOH 91 391 92 HOH HOH A . D 4 HOH 92 392 37 HOH HOH A . D 4 HOH 93 393 93 HOH HOH A . D 4 HOH 94 394 58 HOH HOH A . D 4 HOH 95 395 108 HOH HOH A . D 4 HOH 96 396 100 HOH HOH A . D 4 HOH 97 397 33 HOH HOH A . D 4 HOH 98 398 31 HOH HOH A . D 4 HOH 99 399 102 HOH HOH A . D 4 HOH 100 400 49 HOH HOH A . D 4 HOH 101 401 48 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 106.640 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9VKK _cell.details ? _cell.formula_units_Z ? _cell.length_a 78.205 _cell.length_a_esd ? _cell.length_b 46.617 _cell.length_b_esd ? _cell.length_c 51.920 _cell.length_c_esd ? _cell.volume 181357.175 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9VKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9VKK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Trimethylamine N-oxide dihydrate, 0.1 M Tris (pH 8.5), 20% Polyethylene glycol monomethyl ether 2,000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-03-22 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97861 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97861 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 19.27 _reflns.entry_id 9VKK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 39.58 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7508 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 93.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 767 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.948 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 21.87 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9VKK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.30 _refine.ls_d_res_low 28.92 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7471 _refine.ls_number_reflns_R_free 357 _refine.ls_number_reflns_R_work 7114 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.46 _refine.ls_percent_reflns_R_free 4.78 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1699 _refine.ls_R_factor_R_free 0.2197 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1674 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.9693 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2147 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 28.92 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 1541 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1434 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0088 ? 1469 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.2760 ? 1987 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0700 ? 228 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0083 ? 260 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 16.5619 ? 533 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.30 2.63 . . 131 2510 99.55 . . . . 0.1837 . . . . . . . . . . . . . . . 0.2604 'X-RAY DIFFRACTION' 2.63 3.32 . . 111 2149 83.86 . . . . 0.1651 . . . . . . . . . . . . . . . 0.2291 'X-RAY DIFFRACTION' 3.32 28.92 . . 115 2455 94.10 . . . . 0.1616 . . . . . . . . . . . . . . . 0.1936 # _struct.entry_id 9VKK _struct.title 'Crystal structure of EV71 3C protease in complex with bofutrelvir' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9VKK _struct_keywords.text 'Enterovirus, 3C protease, Complex, bofutrelvir, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POLG_HE71B _struct_ref.pdbx_db_accession Q66478 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PSLDFALSLLRRNIRQAQTDQGHFTMLGVRDRLAILPRHSQPGKTIWVEHKLINVLDAVELVDEQGVNLELTLVTLDTNE KFRDITKCIPEVITGASDATLVINTEHIPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKPGQCGGVVTSVGKIIGIH IGGNGRQAFCAGLKRSYFASE ; _struct_ref.pdbx_align_begin 1550 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9VKK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q66478 _struct_ref_seq.db_align_beg 1550 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1730 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 182 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9VKK GLY A 1 ? UNP Q66478 ? ? 'expression tag' 0 1 1 9VKK SER A 2 ? UNP Q66478 ? ? 'expression tag' 1 2 1 9VKK PHE A 90 ? UNP Q66478 CYS 1637 conflict 89 3 1 9VKK MET A 110 ? UNP Q66478 ILE 1657 conflict 109 4 1 9VKK ALA A 145 ? UNP Q66478 PRO 1692 conflict 144 5 1 9VKK GLY A 170 ? UNP Q66478 ALA 1717 conflict 169 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 220 ? 1 MORE 0 ? 1 'SSA (A^2)' 8480 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'fluorescence resonance energy transfer' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 5 ? ASN A 15 ? LEU A 4 ASN A 14 1 ? 11 HELX_P HELX_P2 AA2 HIS A 41 ? GLN A 43 ? HIS A 40 GLN A 42 5 ? 3 HELX_P HELX_P3 AA3 ILE A 87 ? ILE A 91 ? ILE A 86 ILE A 90 5 ? 5 HELX_P HELX_P4 AA4 LYS A 176 ? ALA A 181 ? LYS A 175 ALA A 180 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_comp_id FHR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C31 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FHR _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.771 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id FHR _pdbx_modification_feature.label_asym_id C _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 148 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id FHR _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 202 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 147 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C31 _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id FHR _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 16 ? THR A 21 ? ILE A 15 THR A 20 AA1 2 GLY A 24 ? ARG A 32 ? GLY A 23 ARG A 31 AA1 3 LEU A 35 ? PRO A 39 ? LEU A 34 PRO A 38 AA1 4 ASN A 70 ? ASP A 79 ? ASN A 69 ASP A 78 AA1 5 LYS A 53 ? VAL A 64 ? LYS A 52 VAL A 63 AA1 6 THR A 47 ? VAL A 50 ? THR A 46 VAL A 49 AA1 7 ILE A 16 ? THR A 21 ? ILE A 15 THR A 20 AA2 1 ALA A 98 ? ILE A 105 ? ALA A 97 ILE A 104 AA2 2 MET A 113 ? LEU A 126 ? MET A 112 LEU A 125 AA2 3 THR A 133 ? TYR A 139 ? THR A 132 TYR A 138 AA2 4 GLY A 170 ? GLY A 174 ? GLY A 169 GLY A 173 AA2 5 LYS A 157 ? GLY A 165 ? LYS A 156 GLY A 164 AA2 6 VAL A 151 ? SER A 154 ? VAL A 150 SER A 153 AA2 7 ALA A 98 ? ILE A 105 ? ALA A 97 ILE A 104 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 19 ? N ALA A 18 O PHE A 26 ? O PHE A 25 AA1 2 3 N ARG A 32 ? N ARG A 31 O LEU A 35 ? O LEU A 34 AA1 3 4 N LEU A 38 ? N LEU A 37 O THR A 74 ? O THR A 73 AA1 4 5 O ASP A 79 ? O ASP A 78 N ASN A 56 ? N ASN A 55 AA1 5 6 O ILE A 55 ? O ILE A 54 N ILE A 48 ? N ILE A 47 AA1 6 7 O TRP A 49 ? O TRP A 48 N GLN A 20 ? N GLN A 19 AA2 1 2 N LEU A 103 ? N LEU A 102 O VAL A 115 ? O VAL A 114 AA2 2 3 N LEU A 126 ? N LEU A 125 O THR A 133 ? O THR A 132 AA2 3 4 N TYR A 139 ? N TYR A 138 O GLY A 170 ? O GLY A 169 AA2 4 5 O ALA A 173 ? O ALA A 172 N ILE A 161 ? N ILE A 160 AA2 5 6 O GLY A 160 ? O GLY A 159 N VAL A 152 ? N VAL A 151 AA2 6 7 O THR A 153 ? O THR A 152 N THR A 102 ? N THR A 101 # _pdbx_entry_details.entry_id 9VKK _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 362 ? ? O A HOH 396 ? ? 2.09 2 1 O A HOH 372 ? ? O A HOH 384 ? ? 2.16 3 1 O A HOH 309 ? ? O A HOH 364 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 14 ? ? -141.34 -20.43 2 1 ASP A 32 ? ? 46.03 -108.55 3 1 ASP A 99 ? ? 37.05 61.85 4 1 TYR A 122 ? ? -122.10 -51.76 # _pdbx_molecule_features.prd_id PRD_002347 _pdbx_molecule_features.name ;~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide ; _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002347 _pdbx_molecule.asym_id C # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLU _pdbx_unobs_or_zero_occ_residues.auth_seq_id 182 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLU _pdbx_unobs_or_zero_occ_residues.label_seq_id 183 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FHR C02 C N N 88 FHR C07 C Y N 89 FHR C08 C Y N 90 FHR C09 C Y N 91 FHR C10 C Y N 92 FHR C05 C Y N 93 FHR C06 C Y N 94 FHR C04 C Y N 95 FHR C03 C Y N 96 FHR N11 N Y N 97 FHR O01 O N N 98 FHR N12 N N N 99 FHR C13 C N S 100 FHR C21 C N N 101 FHR O33 O N N 102 FHR C14 C N N 103 FHR C15 C N N 104 FHR C20 C N N 105 FHR C19 C N N 106 FHR C18 C N N 107 FHR C17 C N N 108 FHR C16 C N N 109 FHR O30 O N N 110 FHR C29 C N N 111 FHR N28 N N N 112 FHR C27 C N N 113 FHR C26 C N N 114 FHR C25 C N S 115 FHR C24 C N N 116 FHR C23 C N S 117 FHR N22 N N N 118 FHR C31 C N N 119 FHR O32 O N N 120 FHR H15 H N N 121 FHR H16 H N N 122 FHR H17 H N N 123 FHR H14 H N N 124 FHR H13 H N N 125 FHR H32 H N N 126 FHR H1 H N N 127 FHR H2 H N N 128 FHR H18 H N N 129 FHR H19 H N N 130 FHR H3 H N N 131 FHR H7 H N N 132 FHR H6 H N N 133 FHR H25 H N N 134 FHR H24 H N N 135 FHR H23 H N N 136 FHR H22 H N N 137 FHR H5 H N N 138 FHR H4 H N N 139 FHR H20 H N N 140 FHR H21 H N N 141 FHR H34 H N N 142 FHR H28 H N N 143 FHR H29 H N N 144 FHR H10 H N N 145 FHR H11 H N N 146 FHR H27 H N N 147 FHR H9 H N N 148 FHR H8 H N N 149 FHR H26 H N N 150 FHR H33 H N N 151 FHR H31 H N N 152 GLN N N N N 153 GLN CA C N S 154 GLN C C N N 155 GLN O O N N 156 GLN CB C N N 157 GLN CG C N N 158 GLN CD C N N 159 GLN OE1 O N N 160 GLN NE2 N N N 161 GLN OXT O N N 162 GLN H H N N 163 GLN H2 H N N 164 GLN HA H N N 165 GLN HB2 H N N 166 GLN HB3 H N N 167 GLN HG2 H N N 168 GLN HG3 H N N 169 GLN HE21 H N N 170 GLN HE22 H N N 171 GLN HXT H N N 172 GLU N N N N 173 GLU CA C N S 174 GLU C C N N 175 GLU O O N N 176 GLU CB C N N 177 GLU CG C N N 178 GLU CD C N N 179 GLU OE1 O N N 180 GLU OE2 O N N 181 GLU OXT O N N 182 GLU H H N N 183 GLU H2 H N N 184 GLU HA H N N 185 GLU HB2 H N N 186 GLU HB3 H N N 187 GLU HG2 H N N 188 GLU HG3 H N N 189 GLU HE2 H N N 190 GLU HXT H N N 191 GLY N N N N 192 GLY CA C N N 193 GLY C C N N 194 GLY O O N N 195 GLY OXT O N N 196 GLY H H N N 197 GLY H2 H N N 198 GLY HA2 H N N 199 GLY HA3 H N N 200 GLY HXT H N N 201 GOL C1 C N N 202 GOL O1 O N N 203 GOL C2 C N N 204 GOL O2 O N N 205 GOL C3 C N N 206 GOL O3 O N N 207 GOL H11 H N N 208 GOL H12 H N N 209 GOL HO1 H N N 210 GOL H2 H N N 211 GOL HO2 H N N 212 GOL H31 H N N 213 GOL H32 H N N 214 GOL HO3 H N N 215 HIS N N N N 216 HIS CA C N S 217 HIS C C N N 218 HIS O O N N 219 HIS CB C N N 220 HIS CG C Y N 221 HIS ND1 N Y N 222 HIS CD2 C Y N 223 HIS CE1 C Y N 224 HIS NE2 N Y N 225 HIS OXT O N N 226 HIS H H N N 227 HIS H2 H N N 228 HIS HA H N N 229 HIS HB2 H N N 230 HIS HB3 H N N 231 HIS HD1 H N N 232 HIS HD2 H N N 233 HIS HE1 H N N 234 HIS HE2 H N N 235 HIS HXT H N N 236 HOH O O N N 237 HOH H1 H N N 238 HOH H2 H N N 239 ILE N N N N 240 ILE CA C N S 241 ILE C C N N 242 ILE O O N N 243 ILE CB C N S 244 ILE CG1 C N N 245 ILE CG2 C N N 246 ILE CD1 C N N 247 ILE OXT O N N 248 ILE H H N N 249 ILE H2 H N N 250 ILE HA H N N 251 ILE HB H N N 252 ILE HG12 H N N 253 ILE HG13 H N N 254 ILE HG21 H N N 255 ILE HG22 H N N 256 ILE HG23 H N N 257 ILE HD11 H N N 258 ILE HD12 H N N 259 ILE HD13 H N N 260 ILE HXT H N N 261 LEU N N N N 262 LEU CA C N S 263 LEU C C N N 264 LEU O O N N 265 LEU CB C N N 266 LEU CG C N N 267 LEU CD1 C N N 268 LEU CD2 C N N 269 LEU OXT O N N 270 LEU H H N N 271 LEU H2 H N N 272 LEU HA H N N 273 LEU HB2 H N N 274 LEU HB3 H N N 275 LEU HG H N N 276 LEU HD11 H N N 277 LEU HD12 H N N 278 LEU HD13 H N N 279 LEU HD21 H N N 280 LEU HD22 H N N 281 LEU HD23 H N N 282 LEU HXT H N N 283 LYS N N N N 284 LYS CA C N S 285 LYS C C N N 286 LYS O O N N 287 LYS CB C N N 288 LYS CG C N N 289 LYS CD C N N 290 LYS CE C N N 291 LYS NZ N N N 292 LYS OXT O N N 293 LYS H H N N 294 LYS H2 H N N 295 LYS HA H N N 296 LYS HB2 H N N 297 LYS HB3 H N N 298 LYS HG2 H N N 299 LYS HG3 H N N 300 LYS HD2 H N N 301 LYS HD3 H N N 302 LYS HE2 H N N 303 LYS HE3 H N N 304 LYS HZ1 H N N 305 LYS HZ2 H N N 306 LYS HZ3 H N N 307 LYS HXT H N N 308 MET N N N N 309 MET CA C N S 310 MET C C N N 311 MET O O N N 312 MET CB C N N 313 MET CG C N N 314 MET SD S N N 315 MET CE C N N 316 MET OXT O N N 317 MET H H N N 318 MET H2 H N N 319 MET HA H N N 320 MET HB2 H N N 321 MET HB3 H N N 322 MET HG2 H N N 323 MET HG3 H N N 324 MET HE1 H N N 325 MET HE2 H N N 326 MET HE3 H N N 327 MET HXT H N N 328 PHE N N N N 329 PHE CA C N S 330 PHE C C N N 331 PHE O O N N 332 PHE CB C N N 333 PHE CG C Y N 334 PHE CD1 C Y N 335 PHE CD2 C Y N 336 PHE CE1 C Y N 337 PHE CE2 C Y N 338 PHE CZ C Y N 339 PHE OXT O N N 340 PHE H H N N 341 PHE H2 H N N 342 PHE HA H N N 343 PHE HB2 H N N 344 PHE HB3 H N N 345 PHE HD1 H N N 346 PHE HD2 H N N 347 PHE HE1 H N N 348 PHE HE2 H N N 349 PHE HZ H N N 350 PHE HXT H N N 351 PRO N N N N 352 PRO CA C N S 353 PRO C C N N 354 PRO O O N N 355 PRO CB C N N 356 PRO CG C N N 357 PRO CD C N N 358 PRO OXT O N N 359 PRO H H N N 360 PRO HA H N N 361 PRO HB2 H N N 362 PRO HB3 H N N 363 PRO HG2 H N N 364 PRO HG3 H N N 365 PRO HD2 H N N 366 PRO HD3 H N N 367 PRO HXT H N N 368 SER N N N N 369 SER CA C N S 370 SER C C N N 371 SER O O N N 372 SER CB C N N 373 SER OG O N N 374 SER OXT O N N 375 SER H H N N 376 SER H2 H N N 377 SER HA H N N 378 SER HB2 H N N 379 SER HB3 H N N 380 SER HG H N N 381 SER HXT H N N 382 THR N N N N 383 THR CA C N S 384 THR C C N N 385 THR O O N N 386 THR CB C N R 387 THR OG1 O N N 388 THR CG2 C N N 389 THR OXT O N N 390 THR H H N N 391 THR H2 H N N 392 THR HA H N N 393 THR HB H N N 394 THR HG1 H N N 395 THR HG21 H N N 396 THR HG22 H N N 397 THR HG23 H N N 398 THR HXT H N N 399 TRP N N N N 400 TRP CA C N S 401 TRP C C N N 402 TRP O O N N 403 TRP CB C N N 404 TRP CG C Y N 405 TRP CD1 C Y N 406 TRP CD2 C Y N 407 TRP NE1 N Y N 408 TRP CE2 C Y N 409 TRP CE3 C Y N 410 TRP CZ2 C Y N 411 TRP CZ3 C Y N 412 TRP CH2 C Y N 413 TRP OXT O N N 414 TRP H H N N 415 TRP H2 H N N 416 TRP HA H N N 417 TRP HB2 H N N 418 TRP HB3 H N N 419 TRP HD1 H N N 420 TRP HE1 H N N 421 TRP HE3 H N N 422 TRP HZ2 H N N 423 TRP HZ3 H N N 424 TRP HH2 H N N 425 TRP HXT H N N 426 TYR N N N N 427 TYR CA C N S 428 TYR C C N N 429 TYR O O N N 430 TYR CB C N N 431 TYR CG C Y N 432 TYR CD1 C Y N 433 TYR CD2 C Y N 434 TYR CE1 C Y N 435 TYR CE2 C Y N 436 TYR CZ C Y N 437 TYR OH O N N 438 TYR OXT O N N 439 TYR H H N N 440 TYR H2 H N N 441 TYR HA H N N 442 TYR HB2 H N N 443 TYR HB3 H N N 444 TYR HD1 H N N 445 TYR HD2 H N N 446 TYR HE1 H N N 447 TYR HE2 H N N 448 TYR HH H N N 449 TYR HXT H N N 450 VAL N N N N 451 VAL CA C N S 452 VAL C C N N 453 VAL O O N N 454 VAL CB C N N 455 VAL CG1 C N N 456 VAL CG2 C N N 457 VAL OXT O N N 458 VAL H H N N 459 VAL H2 H N N 460 VAL HA H N N 461 VAL HB H N N 462 VAL HG11 H N N 463 VAL HG12 H N N 464 VAL HG13 H N N 465 VAL HG21 H N N 466 VAL HG22 H N N 467 VAL HG23 H N N 468 VAL HXT H N N 469 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FHR C10 C05 doub Y N 83 FHR C10 C09 sing Y N 84 FHR C10 N11 sing Y N 85 FHR N12 C13 sing N N 86 FHR N12 C02 sing N N 87 FHR C13 C21 sing N N 88 FHR C13 C14 sing N N 89 FHR C15 C20 sing N N 90 FHR C15 C14 sing N N 91 FHR C15 C16 sing N N 92 FHR C17 C16 sing N N 93 FHR C17 C18 sing N N 94 FHR C20 C19 sing N N 95 FHR C21 N22 sing N N 96 FHR C21 O33 doub N N 97 FHR C24 C23 sing N N 98 FHR C24 C25 sing N N 99 FHR C26 C25 sing N N 100 FHR C02 C03 sing N N 101 FHR C02 O01 doub N N 102 FHR C03 C04 doub Y N 103 FHR C03 N11 sing Y N 104 FHR C04 C05 sing Y N 105 FHR C05 C06 sing Y N 106 FHR C06 C07 doub Y N 107 FHR C07 C08 sing Y N 108 FHR C08 C09 doub Y N 109 FHR C18 C19 sing N N 110 FHR C23 C31 sing N N 111 FHR C23 N22 sing N N 112 FHR C25 C29 sing N N 113 FHR C27 N28 sing N N 114 FHR C29 N28 sing N N 115 FHR C29 O30 doub N N 116 FHR C31 O32 doub N N 117 FHR N12 H1 sing N N 118 FHR C13 H2 sing N N 119 FHR C15 H3 sing N N 120 FHR C17 H4 sing N N 121 FHR C17 H5 sing N N 122 FHR C20 H6 sing N N 123 FHR C20 H7 sing N N 124 FHR C24 H8 sing N N 125 FHR C24 H9 sing N N 126 FHR C26 H10 sing N N 127 FHR C26 H11 sing N N 128 FHR C04 H13 sing N N 129 FHR C06 H14 sing N N 130 FHR C07 H15 sing N N 131 FHR C08 H16 sing N N 132 FHR C09 H17 sing N N 133 FHR C14 H18 sing N N 134 FHR C14 H19 sing N N 135 FHR C16 H20 sing N N 136 FHR C16 H21 sing N N 137 FHR C18 H22 sing N N 138 FHR C18 H23 sing N N 139 FHR C19 H24 sing N N 140 FHR C19 H25 sing N N 141 FHR C23 H26 sing N N 142 FHR C25 H27 sing N N 143 FHR C27 H28 sing N N 144 FHR C27 H29 sing N N 145 FHR C31 H31 sing N N 146 FHR N11 H32 sing N N 147 FHR N22 H33 sing N N 148 FHR N28 H34 sing N N 149 FHR C26 C27 sing N N 150 GLN N CA sing N N 151 GLN N H sing N N 152 GLN N H2 sing N N 153 GLN CA C sing N N 154 GLN CA CB sing N N 155 GLN CA HA sing N N 156 GLN C O doub N N 157 GLN C OXT sing N N 158 GLN CB CG sing N N 159 GLN CB HB2 sing N N 160 GLN CB HB3 sing N N 161 GLN CG CD sing N N 162 GLN CG HG2 sing N N 163 GLN CG HG3 sing N N 164 GLN CD OE1 doub N N 165 GLN CD NE2 sing N N 166 GLN NE2 HE21 sing N N 167 GLN NE2 HE22 sing N N 168 GLN OXT HXT sing N N 169 GLU N CA sing N N 170 GLU N H sing N N 171 GLU N H2 sing N N 172 GLU CA C sing N N 173 GLU CA CB sing N N 174 GLU CA HA sing N N 175 GLU C O doub N N 176 GLU C OXT sing N N 177 GLU CB CG sing N N 178 GLU CB HB2 sing N N 179 GLU CB HB3 sing N N 180 GLU CG CD sing N N 181 GLU CG HG2 sing N N 182 GLU CG HG3 sing N N 183 GLU CD OE1 doub N N 184 GLU CD OE2 sing N N 185 GLU OE2 HE2 sing N N 186 GLU OXT HXT sing N N 187 GLY N CA sing N N 188 GLY N H sing N N 189 GLY N H2 sing N N 190 GLY CA C sing N N 191 GLY CA HA2 sing N N 192 GLY CA HA3 sing N N 193 GLY C O doub N N 194 GLY C OXT sing N N 195 GLY OXT HXT sing N N 196 GOL C1 O1 sing N N 197 GOL C1 C2 sing N N 198 GOL C1 H11 sing N N 199 GOL C1 H12 sing N N 200 GOL O1 HO1 sing N N 201 GOL C2 O2 sing N N 202 GOL C2 C3 sing N N 203 GOL C2 H2 sing N N 204 GOL O2 HO2 sing N N 205 GOL C3 O3 sing N N 206 GOL C3 H31 sing N N 207 GOL C3 H32 sing N N 208 GOL O3 HO3 sing N N 209 HIS N CA sing N N 210 HIS N H sing N N 211 HIS N H2 sing N N 212 HIS CA C sing N N 213 HIS CA CB sing N N 214 HIS CA HA sing N N 215 HIS C O doub N N 216 HIS C OXT sing N N 217 HIS CB CG sing N N 218 HIS CB HB2 sing N N 219 HIS CB HB3 sing N N 220 HIS CG ND1 sing Y N 221 HIS CG CD2 doub Y N 222 HIS ND1 CE1 doub Y N 223 HIS ND1 HD1 sing N N 224 HIS CD2 NE2 sing Y N 225 HIS CD2 HD2 sing N N 226 HIS CE1 NE2 sing Y N 227 HIS CE1 HE1 sing N N 228 HIS NE2 HE2 sing N N 229 HIS OXT HXT sing N N 230 HOH O H1 sing N N 231 HOH O H2 sing N N 232 ILE N CA sing N N 233 ILE N H sing N N 234 ILE N H2 sing N N 235 ILE CA C sing N N 236 ILE CA CB sing N N 237 ILE CA HA sing N N 238 ILE C O doub N N 239 ILE C OXT sing N N 240 ILE CB CG1 sing N N 241 ILE CB CG2 sing N N 242 ILE CB HB sing N N 243 ILE CG1 CD1 sing N N 244 ILE CG1 HG12 sing N N 245 ILE CG1 HG13 sing N N 246 ILE CG2 HG21 sing N N 247 ILE CG2 HG22 sing N N 248 ILE CG2 HG23 sing N N 249 ILE CD1 HD11 sing N N 250 ILE CD1 HD12 sing N N 251 ILE CD1 HD13 sing N N 252 ILE OXT HXT sing N N 253 LEU N CA sing N N 254 LEU N H sing N N 255 LEU N H2 sing N N 256 LEU CA C sing N N 257 LEU CA CB sing N N 258 LEU CA HA sing N N 259 LEU C O doub N N 260 LEU C OXT sing N N 261 LEU CB CG sing N N 262 LEU CB HB2 sing N N 263 LEU CB HB3 sing N N 264 LEU CG CD1 sing N N 265 LEU CG CD2 sing N N 266 LEU CG HG sing N N 267 LEU CD1 HD11 sing N N 268 LEU CD1 HD12 sing N N 269 LEU CD1 HD13 sing N N 270 LEU CD2 HD21 sing N N 271 LEU CD2 HD22 sing N N 272 LEU CD2 HD23 sing N N 273 LEU OXT HXT sing N N 274 LYS N CA sing N N 275 LYS N H sing N N 276 LYS N H2 sing N N 277 LYS CA C sing N N 278 LYS CA CB sing N N 279 LYS CA HA sing N N 280 LYS C O doub N N 281 LYS C OXT sing N N 282 LYS CB CG sing N N 283 LYS CB HB2 sing N N 284 LYS CB HB3 sing N N 285 LYS CG CD sing N N 286 LYS CG HG2 sing N N 287 LYS CG HG3 sing N N 288 LYS CD CE sing N N 289 LYS CD HD2 sing N N 290 LYS CD HD3 sing N N 291 LYS CE NZ sing N N 292 LYS CE HE2 sing N N 293 LYS CE HE3 sing N N 294 LYS NZ HZ1 sing N N 295 LYS NZ HZ2 sing N N 296 LYS NZ HZ3 sing N N 297 LYS OXT HXT sing N N 298 MET N CA sing N N 299 MET N H sing N N 300 MET N H2 sing N N 301 MET CA C sing N N 302 MET CA CB sing N N 303 MET CA HA sing N N 304 MET C O doub N N 305 MET C OXT sing N N 306 MET CB CG sing N N 307 MET CB HB2 sing N N 308 MET CB HB3 sing N N 309 MET CG SD sing N N 310 MET CG HG2 sing N N 311 MET CG HG3 sing N N 312 MET SD CE sing N N 313 MET CE HE1 sing N N 314 MET CE HE2 sing N N 315 MET CE HE3 sing N N 316 MET OXT HXT sing N N 317 PHE N CA sing N N 318 PHE N H sing N N 319 PHE N H2 sing N N 320 PHE CA C sing N N 321 PHE CA CB sing N N 322 PHE CA HA sing N N 323 PHE C O doub N N 324 PHE C OXT sing N N 325 PHE CB CG sing N N 326 PHE CB HB2 sing N N 327 PHE CB HB3 sing N N 328 PHE CG CD1 doub Y N 329 PHE CG CD2 sing Y N 330 PHE CD1 CE1 sing Y N 331 PHE CD1 HD1 sing N N 332 PHE CD2 CE2 doub Y N 333 PHE CD2 HD2 sing N N 334 PHE CE1 CZ doub Y N 335 PHE CE1 HE1 sing N N 336 PHE CE2 CZ sing Y N 337 PHE CE2 HE2 sing N N 338 PHE CZ HZ sing N N 339 PHE OXT HXT sing N N 340 PRO N CA sing N N 341 PRO N CD sing N N 342 PRO N H sing N N 343 PRO CA C sing N N 344 PRO CA CB sing N N 345 PRO CA HA sing N N 346 PRO C O doub N N 347 PRO C OXT sing N N 348 PRO CB CG sing N N 349 PRO CB HB2 sing N N 350 PRO CB HB3 sing N N 351 PRO CG CD sing N N 352 PRO CG HG2 sing N N 353 PRO CG HG3 sing N N 354 PRO CD HD2 sing N N 355 PRO CD HD3 sing N N 356 PRO OXT HXT sing N N 357 SER N CA sing N N 358 SER N H sing N N 359 SER N H2 sing N N 360 SER CA C sing N N 361 SER CA CB sing N N 362 SER CA HA sing N N 363 SER C O doub N N 364 SER C OXT sing N N 365 SER CB OG sing N N 366 SER CB HB2 sing N N 367 SER CB HB3 sing N N 368 SER OG HG sing N N 369 SER OXT HXT sing N N 370 THR N CA sing N N 371 THR N H sing N N 372 THR N H2 sing N N 373 THR CA C sing N N 374 THR CA CB sing N N 375 THR CA HA sing N N 376 THR C O doub N N 377 THR C OXT sing N N 378 THR CB OG1 sing N N 379 THR CB CG2 sing N N 380 THR CB HB sing N N 381 THR OG1 HG1 sing N N 382 THR CG2 HG21 sing N N 383 THR CG2 HG22 sing N N 384 THR CG2 HG23 sing N N 385 THR OXT HXT sing N N 386 TRP N CA sing N N 387 TRP N H sing N N 388 TRP N H2 sing N N 389 TRP CA C sing N N 390 TRP CA CB sing N N 391 TRP CA HA sing N N 392 TRP C O doub N N 393 TRP C OXT sing N N 394 TRP CB CG sing N N 395 TRP CB HB2 sing N N 396 TRP CB HB3 sing N N 397 TRP CG CD1 doub Y N 398 TRP CG CD2 sing Y N 399 TRP CD1 NE1 sing Y N 400 TRP CD1 HD1 sing N N 401 TRP CD2 CE2 doub Y N 402 TRP CD2 CE3 sing Y N 403 TRP NE1 CE2 sing Y N 404 TRP NE1 HE1 sing N N 405 TRP CE2 CZ2 sing Y N 406 TRP CE3 CZ3 doub Y N 407 TRP CE3 HE3 sing N N 408 TRP CZ2 CH2 doub Y N 409 TRP CZ2 HZ2 sing N N 410 TRP CZ3 CH2 sing Y N 411 TRP CZ3 HZ3 sing N N 412 TRP CH2 HH2 sing N N 413 TRP OXT HXT sing N N 414 TYR N CA sing N N 415 TYR N H sing N N 416 TYR N H2 sing N N 417 TYR CA C sing N N 418 TYR CA CB sing N N 419 TYR CA HA sing N N 420 TYR C O doub N N 421 TYR C OXT sing N N 422 TYR CB CG sing N N 423 TYR CB HB2 sing N N 424 TYR CB HB3 sing N N 425 TYR CG CD1 doub Y N 426 TYR CG CD2 sing Y N 427 TYR CD1 CE1 sing Y N 428 TYR CD1 HD1 sing N N 429 TYR CD2 CE2 doub Y N 430 TYR CD2 HD2 sing N N 431 TYR CE1 CZ doub Y N 432 TYR CE1 HE1 sing N N 433 TYR CE2 CZ sing Y N 434 TYR CE2 HE2 sing N N 435 TYR CZ OH sing N N 436 TYR OH HH sing N N 437 TYR OXT HXT sing N N 438 VAL N CA sing N N 439 VAL N H sing N N 440 VAL N H2 sing N N 441 VAL CA C sing N N 442 VAL CA CB sing N N 443 VAL CA HA sing N N 444 VAL C O doub N N 445 VAL C OXT sing N N 446 VAL CB CG1 sing N N 447 VAL CB CG2 sing N N 448 VAL CB HB sing N N 449 VAL CG1 HG11 sing N N 450 VAL CG1 HG12 sing N N 451 VAL CG1 HG13 sing N N 452 VAL CG2 HG21 sing N N 453 VAL CG2 HG22 sing N N 454 VAL CG2 HG23 sing N N 455 VAL OXT HXT sing N N 456 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code pdb_00007dnc _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 9VKK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012787 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003822 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021451 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020102 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #