data_9VNG # _entry.id 9VNG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9VNG pdb_00009vng 10.2210/pdb9vng/pdb WWPDB D_1300061093 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-04-01 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9VNG _pdbx_database_status.recvd_initial_deposition_date 2025-06-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email cluo@simm.ac.cn _pdbx_contact_author.name_first Cheng _pdbx_contact_author.name_last Luo _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3864-8382 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wu, H.' 1 ? 'Jiang, H.' 2 ? 'Luo, C.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Discovering Targetable Conformation of RhoA Mutant by Integrating Native Mass Spectrometry, Ultraviolet Photodissociation, and X-ray Diffraction. ; _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.5c20067 _citation.pdbx_database_id_PubMed 41837560 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, H.' 1 ? primary 'Liu, Z.' 2 ? primary 'Jiang, H.' 3 ? primary 'Zhao, H.' 4 ? primary 'Dong, C.' 5 ? primary 'Lu, Y.' 6 ? primary 'Zu, S.' 7 ? primary 'Guo, Y.' 8 ? primary 'Lai, C.' 9 ? primary 'Luo, P.' 10 ? primary 'Xu, K.' 11 0009-0000-7111-3131 primary 'Yang, Y.' 12 ? primary 'Yang, Y.' 13 ? primary 'Sun, Z.' 14 ? primary 'Huang, Q.' 15 ? primary 'Xiong, H.' 16 0009-0002-8920-9355 primary 'Zhou, L.' 17 ? primary 'Luo, Y.' 18 ? primary 'Zeng, Y.' 19 ? primary 'Du, D.' 20 ? primary 'Liang, Z.' 21 0000-0003-0763-5407 primary 'Xiao, W.' 22 0000-0001-6826-1993 primary 'Zhao, S.' 23 ? primary 'Zhang, W.' 24 0000-0001-6518-4152 primary 'Tang, Y.' 25 ? primary 'Xiao, C.' 26 0000-0002-1549-5945 primary 'Chen, K.' 27 ? primary 'Yang, X.' 28 0000-0001-6684-9187 primary 'Wang, F.' 29 0000-0002-8118-7019 primary 'Luo, C.' 30 0000-0003-3864-8382 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transforming protein RhoA' 20464.479 1 3.6.5.2 Y42C ? 'Y42C mutant' 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn '4-(2-nitroethyl)-1~{H}-indole' 190.199 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 120 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rho cDNA clone 12,h12' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENCVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC SAKTKDGVREVFEMATRAALQA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENCVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC SAKTKDGVREVFEMATRAALQA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 '4-(2-nitroethyl)-1~{H}-indole' A1D9L 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 ALA n 1 4 ALA n 1 5 ILE n 1 6 ARG n 1 7 LYS n 1 8 LYS n 1 9 LEU n 1 10 VAL n 1 11 ILE n 1 12 VAL n 1 13 GLY n 1 14 ASP n 1 15 GLY n 1 16 ALA n 1 17 CYS n 1 18 GLY n 1 19 LYS n 1 20 THR n 1 21 CYS n 1 22 LEU n 1 23 LEU n 1 24 ILE n 1 25 VAL n 1 26 PHE n 1 27 SER n 1 28 LYS n 1 29 ASP n 1 30 GLN n 1 31 PHE n 1 32 PRO n 1 33 GLU n 1 34 VAL n 1 35 TYR n 1 36 VAL n 1 37 PRO n 1 38 THR n 1 39 VAL n 1 40 PHE n 1 41 GLU n 1 42 ASN n 1 43 CYS n 1 44 VAL n 1 45 ALA n 1 46 ASP n 1 47 ILE n 1 48 GLU n 1 49 VAL n 1 50 ASP n 1 51 GLY n 1 52 LYS n 1 53 GLN n 1 54 VAL n 1 55 GLU n 1 56 LEU n 1 57 ALA n 1 58 LEU n 1 59 TRP n 1 60 ASP n 1 61 THR n 1 62 ALA n 1 63 GLY n 1 64 GLN n 1 65 GLU n 1 66 ASP n 1 67 TYR n 1 68 ASP n 1 69 ARG n 1 70 LEU n 1 71 ARG n 1 72 PRO n 1 73 LEU n 1 74 SER n 1 75 TYR n 1 76 PRO n 1 77 ASP n 1 78 THR n 1 79 ASP n 1 80 VAL n 1 81 ILE n 1 82 LEU n 1 83 MET n 1 84 CYS n 1 85 PHE n 1 86 SER n 1 87 ILE n 1 88 ASP n 1 89 SER n 1 90 PRO n 1 91 ASP n 1 92 SER n 1 93 LEU n 1 94 GLU n 1 95 ASN n 1 96 ILE n 1 97 PRO n 1 98 GLU n 1 99 LYS n 1 100 TRP n 1 101 THR n 1 102 PRO n 1 103 GLU n 1 104 VAL n 1 105 LYS n 1 106 HIS n 1 107 PHE n 1 108 CYS n 1 109 PRO n 1 110 ASN n 1 111 VAL n 1 112 PRO n 1 113 ILE n 1 114 ILE n 1 115 LEU n 1 116 VAL n 1 117 GLY n 1 118 ASN n 1 119 LYS n 1 120 LYS n 1 121 ASP n 1 122 LEU n 1 123 ARG n 1 124 ASN n 1 125 ASP n 1 126 GLU n 1 127 HIS n 1 128 THR n 1 129 ARG n 1 130 ARG n 1 131 GLU n 1 132 LEU n 1 133 ALA n 1 134 LYS n 1 135 MET n 1 136 LYS n 1 137 GLN n 1 138 GLU n 1 139 PRO n 1 140 VAL n 1 141 LYS n 1 142 PRO n 1 143 GLU n 1 144 GLU n 1 145 GLY n 1 146 ARG n 1 147 ASP n 1 148 MET n 1 149 ALA n 1 150 ASN n 1 151 ARG n 1 152 ILE n 1 153 GLY n 1 154 ALA n 1 155 PHE n 1 156 GLY n 1 157 TYR n 1 158 MET n 1 159 GLU n 1 160 CYS n 1 161 SER n 1 162 ALA n 1 163 LYS n 1 164 THR n 1 165 LYS n 1 166 ASP n 1 167 GLY n 1 168 VAL n 1 169 ARG n 1 170 GLU n 1 171 VAL n 1 172 PHE n 1 173 GLU n 1 174 MET n 1 175 ALA n 1 176 THR n 1 177 ARG n 1 178 ALA n 1 179 ALA n 1 180 LEU n 1 181 GLN n 1 182 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 182 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RHOA, ARH12, ARHA, RHO12' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1D9L non-polymer . '4-(2-nitroethyl)-1~{H}-indole' ? 'C10 H10 N2 O2' 190.199 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 ALA 3 2 ? ? ? A . n A 1 4 ALA 4 3 3 ALA ALA A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 ARG 6 5 5 ARG ARG A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 LEU 9 8 8 LEU LEU A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 GLY 15 14 14 GLY GLY A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 CYS 17 16 16 CYS CYS A . n A 1 18 GLY 18 17 17 GLY GLY A . n A 1 19 LYS 19 18 18 LYS LYS A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 CYS 21 20 20 CYS CYS A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 ILE 24 23 23 ILE ILE A . n A 1 25 VAL 25 24 24 VAL VAL A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 SER 27 26 26 SER SER A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 GLN 30 29 29 GLN GLN A . n A 1 31 PHE 31 30 30 PHE PHE A . n A 1 32 PRO 32 31 31 PRO PRO A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 TYR 35 34 34 TYR TYR A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 PRO 37 36 36 PRO PRO A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 PHE 40 39 39 PHE PHE A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 CYS 43 42 42 CYS CYS A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 VAL 49 48 48 VAL VAL A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 GLN 53 52 52 GLN GLN A . n A 1 54 VAL 54 53 53 VAL VAL A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 TRP 59 58 58 TRP TRP A . n A 1 60 ASP 60 59 59 ASP ASP A . n A 1 61 THR 61 60 60 THR THR A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 GLN 64 63 ? ? ? A . n A 1 65 GLU 65 64 ? ? ? A . n A 1 66 ASP 66 65 ? ? ? A . n A 1 67 TYR 67 66 ? ? ? A . n A 1 68 ASP 68 67 ? ? ? A . n A 1 69 ARG 69 68 ? ? ? A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ARG 71 70 70 ARG ARG A . n A 1 72 PRO 72 71 71 PRO PRO A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 TYR 75 74 74 TYR TYR A . n A 1 76 PRO 76 75 75 PRO PRO A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 VAL 80 79 79 VAL VAL A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 MET 83 82 82 MET MET A . n A 1 84 CYS 84 83 83 CYS CYS A . n A 1 85 PHE 85 84 84 PHE PHE A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 ILE 87 86 86 ILE ILE A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 PRO 90 89 89 PRO PRO A . n A 1 91 ASP 91 90 90 ASP ASP A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 ASN 95 94 94 ASN ASN A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 TRP 100 99 99 TRP TRP A . n A 1 101 THR 101 100 100 THR THR A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 HIS 106 105 105 HIS HIS A . n A 1 107 PHE 107 106 106 PHE PHE A . n A 1 108 CYS 108 107 107 CYS CYS A . n A 1 109 PRO 109 108 108 PRO PRO A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 PRO 112 111 111 PRO PRO A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 ILE 114 113 113 ILE ILE A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 GLY 117 116 116 GLY GLY A . n A 1 118 ASN 118 117 117 ASN ASN A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 LYS 120 119 119 LYS LYS A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 ARG 123 122 122 ARG ARG A . n A 1 124 ASN 124 123 123 ASN ASN A . n A 1 125 ASP 125 124 124 ASP ASP A . n A 1 126 GLU 126 125 125 GLU GLU A . n A 1 127 HIS 127 126 126 HIS HIS A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 ARG 129 128 128 ARG ARG A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 GLU 131 130 130 GLU GLU A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 ALA 133 132 132 ALA ALA A . n A 1 134 LYS 134 133 133 LYS LYS A . n A 1 135 MET 135 134 134 MET MET A . n A 1 136 LYS 136 135 135 LYS LYS A . n A 1 137 GLN 137 136 136 GLN GLN A . n A 1 138 GLU 138 137 137 GLU GLU A . n A 1 139 PRO 139 138 138 PRO PRO A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 PRO 142 141 141 PRO PRO A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 GLY 145 144 144 GLY GLY A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 MET 148 147 147 MET MET A . n A 1 149 ALA 149 148 148 ALA ALA A . n A 1 150 ASN 150 149 149 ASN ASN A . n A 1 151 ARG 151 150 150 ARG ARG A . n A 1 152 ILE 152 151 151 ILE ILE A . n A 1 153 GLY 153 152 152 GLY GLY A . n A 1 154 ALA 154 153 153 ALA ALA A . n A 1 155 PHE 155 154 154 PHE PHE A . n A 1 156 GLY 156 155 155 GLY GLY A . n A 1 157 TYR 157 156 156 TYR TYR A . n A 1 158 MET 158 157 157 MET MET A . n A 1 159 GLU 159 158 158 GLU GLU A . n A 1 160 CYS 160 159 159 CYS CYS A . n A 1 161 SER 161 160 160 SER SER A . n A 1 162 ALA 162 161 161 ALA ALA A . n A 1 163 LYS 163 162 162 LYS LYS A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 LYS 165 164 164 LYS LYS A . n A 1 166 ASP 166 165 165 ASP ASP A . n A 1 167 GLY 167 166 166 GLY GLY A . n A 1 168 VAL 168 167 167 VAL VAL A . n A 1 169 ARG 169 168 168 ARG ARG A . n A 1 170 GLU 170 169 169 GLU GLU A . n A 1 171 VAL 171 170 170 VAL VAL A . n A 1 172 PHE 172 171 171 PHE PHE A . n A 1 173 GLU 173 172 172 GLU GLU A . n A 1 174 MET 174 173 173 MET MET A . n A 1 175 ALA 175 174 174 ALA ALA A . n A 1 176 THR 176 175 175 THR THR A . n A 1 177 ARG 177 176 176 ARG ARG A . n A 1 178 ALA 178 177 177 ALA ALA A . n A 1 179 ALA 179 178 178 ALA ALA A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 GLN 181 180 180 GLN GLN A . n A 1 182 ALA 182 181 ? ? ? A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 GDP ? ? GDP ? ? 'SUBJECT OF INVESTIGATION' ? 2 A1D9L ? ? A1D9L ? ? 'SUBJECT OF INVESTIGATION' ? 3 MG ? ? MG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 201 201 GDP GDP A . C 3 A1D9L 1 202 202 A1D9L LIG A . D 4 MG 1 203 1 MG MG A . E 5 HOH 1 301 147 HOH HOH A . E 5 HOH 2 302 75 HOH HOH A . E 5 HOH 3 303 142 HOH HOH A . E 5 HOH 4 304 85 HOH HOH A . E 5 HOH 5 305 51 HOH HOH A . E 5 HOH 6 306 77 HOH HOH A . E 5 HOH 7 307 65 HOH HOH A . E 5 HOH 8 308 179 HOH HOH A . E 5 HOH 9 309 146 HOH HOH A . E 5 HOH 10 310 22 HOH HOH A . E 5 HOH 11 311 13 HOH HOH A . E 5 HOH 12 312 27 HOH HOH A . E 5 HOH 13 313 39 HOH HOH A . E 5 HOH 14 314 18 HOH HOH A . E 5 HOH 15 315 150 HOH HOH A . E 5 HOH 16 316 190 HOH HOH A . E 5 HOH 17 317 53 HOH HOH A . E 5 HOH 18 318 30 HOH HOH A . E 5 HOH 19 319 9 HOH HOH A . E 5 HOH 20 320 177 HOH HOH A . E 5 HOH 21 321 176 HOH HOH A . E 5 HOH 22 322 2 HOH HOH A . E 5 HOH 23 323 61 HOH HOH A . E 5 HOH 24 324 50 HOH HOH A . E 5 HOH 25 325 33 HOH HOH A . E 5 HOH 26 326 17 HOH HOH A . E 5 HOH 27 327 86 HOH HOH A . E 5 HOH 28 328 73 HOH HOH A . E 5 HOH 29 329 1 HOH HOH A . E 5 HOH 30 330 35 HOH HOH A . E 5 HOH 31 331 44 HOH HOH A . E 5 HOH 32 332 11 HOH HOH A . E 5 HOH 33 333 55 HOH HOH A . E 5 HOH 34 334 3 HOH HOH A . E 5 HOH 35 335 113 HOH HOH A . E 5 HOH 36 336 58 HOH HOH A . E 5 HOH 37 337 8 HOH HOH A . E 5 HOH 38 338 214 HOH HOH A . E 5 HOH 39 339 96 HOH HOH A . E 5 HOH 40 340 56 HOH HOH A . E 5 HOH 41 341 41 HOH HOH A . E 5 HOH 42 342 191 HOH HOH A . E 5 HOH 43 343 59 HOH HOH A . E 5 HOH 44 344 42 HOH HOH A . E 5 HOH 45 345 40 HOH HOH A . E 5 HOH 46 346 153 HOH HOH A . E 5 HOH 47 347 19 HOH HOH A . E 5 HOH 48 348 5 HOH HOH A . E 5 HOH 49 349 60 HOH HOH A . E 5 HOH 50 350 23 HOH HOH A . E 5 HOH 51 351 38 HOH HOH A . E 5 HOH 52 352 37 HOH HOH A . E 5 HOH 53 353 10 HOH HOH A . E 5 HOH 54 354 244 HOH HOH A . E 5 HOH 55 355 148 HOH HOH A . E 5 HOH 56 356 82 HOH HOH A . E 5 HOH 57 357 94 HOH HOH A . E 5 HOH 58 358 7 HOH HOH A . E 5 HOH 59 359 6 HOH HOH A . E 5 HOH 60 360 24 HOH HOH A . E 5 HOH 61 361 21 HOH HOH A . E 5 HOH 62 362 184 HOH HOH A . E 5 HOH 63 363 12 HOH HOH A . E 5 HOH 64 364 25 HOH HOH A . E 5 HOH 65 365 91 HOH HOH A . E 5 HOH 66 366 66 HOH HOH A . E 5 HOH 67 367 4 HOH HOH A . E 5 HOH 68 368 145 HOH HOH A . E 5 HOH 69 369 34 HOH HOH A . E 5 HOH 70 370 88 HOH HOH A . E 5 HOH 71 371 28 HOH HOH A . E 5 HOH 72 372 193 HOH HOH A . E 5 HOH 73 373 171 HOH HOH A . E 5 HOH 74 374 97 HOH HOH A . E 5 HOH 75 375 57 HOH HOH A . E 5 HOH 76 376 271 HOH HOH A . E 5 HOH 77 377 252 HOH HOH A . E 5 HOH 78 378 32 HOH HOH A . E 5 HOH 79 379 291 HOH HOH A . E 5 HOH 80 380 46 HOH HOH A . E 5 HOH 81 381 31 HOH HOH A . E 5 HOH 82 382 15 HOH HOH A . E 5 HOH 83 383 69 HOH HOH A . E 5 HOH 84 384 43 HOH HOH A . E 5 HOH 85 385 14 HOH HOH A . E 5 HOH 86 386 126 HOH HOH A . E 5 HOH 87 387 45 HOH HOH A . E 5 HOH 88 388 16 HOH HOH A . E 5 HOH 89 389 26 HOH HOH A . E 5 HOH 90 390 152 HOH HOH A . E 5 HOH 91 391 79 HOH HOH A . E 5 HOH 92 392 52 HOH HOH A . E 5 HOH 93 393 131 HOH HOH A . E 5 HOH 94 394 212 HOH HOH A . E 5 HOH 95 395 36 HOH HOH A . E 5 HOH 96 396 203 HOH HOH A . E 5 HOH 97 397 262 HOH HOH A . E 5 HOH 98 398 29 HOH HOH A . E 5 HOH 99 399 219 HOH HOH A . E 5 HOH 100 400 256 HOH HOH A . E 5 HOH 101 401 111 HOH HOH A . E 5 HOH 102 402 114 HOH HOH A . E 5 HOH 103 403 178 HOH HOH A . E 5 HOH 104 404 119 HOH HOH A . E 5 HOH 105 405 241 HOH HOH A . E 5 HOH 106 406 240 HOH HOH A . E 5 HOH 107 407 167 HOH HOH A . E 5 HOH 108 408 95 HOH HOH A . E 5 HOH 109 409 255 HOH HOH A . E 5 HOH 110 410 173 HOH HOH A . E 5 HOH 111 411 158 HOH HOH A . E 5 HOH 112 412 205 HOH HOH A . E 5 HOH 113 413 259 HOH HOH A . E 5 HOH 114 414 223 HOH HOH A . E 5 HOH 115 415 63 HOH HOH A . E 5 HOH 116 416 74 HOH HOH A . E 5 HOH 117 417 188 HOH HOH A . E 5 HOH 118 418 68 HOH HOH A . E 5 HOH 119 419 273 HOH HOH A . E 5 HOH 120 420 144 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.21.1_5286: ???)' ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . ? 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9VNG _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.040 _cell.length_a_esd ? _cell.length_b 63.500 _cell.length_b_esd ? _cell.length_c 82.720 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9VNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9VNG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Ammonium acetate, 0.1 M Sodium acetate trihydrate pH 4.6, 30% w/v Polyethylene glycol 4000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-04-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979183 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979183 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9VNG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.43 _reflns.d_resolution_low 34.66 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 31655 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.43 _reflns_shell.d_res_low 1.47 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2169 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.679 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9VNG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.43 _refine.ls_d_res_low 34.66 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 31604 _refine.ls_number_reflns_R_free 1559 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.77 _refine.ls_percent_reflns_R_free 4.93 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1907 _refine.ls_R_factor_R_free 0.2206 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1892 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.81 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.15 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1350 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 1513 _refine_hist.d_res_high 1.43 _refine_hist.d_res_low 34.66 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1427 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.993 ? 1936 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 18.002 ? 541 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.089 ? 214 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 247 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.43 1.48 . . 137 2573 95.00 . . . . 0.2453 . . . . . . . . . . . . . . . 0.2759 'X-RAY DIFFRACTION' 1.48 1.53 . . 139 2669 98.00 . . . . 0.2028 . . . . . . . . . . . . . . . 0.2107 'X-RAY DIFFRACTION' 1.53 1.59 . . 151 2647 98.00 . . . . 0.1827 . . . . . . . . . . . . . . . 0.1949 'X-RAY DIFFRACTION' 1.59 1.66 . . 155 2660 99.00 . . . . 0.1856 . . . . . . . . . . . . . . . 0.2568 'X-RAY DIFFRACTION' 1.66 1.75 . . 117 2719 99.00 . . . . 0.1918 . . . . . . . . . . . . . . . 0.2661 'X-RAY DIFFRACTION' 1.75 1.86 . . 141 2725 99.00 . . . . 0.1798 . . . . . . . . . . . . . . . 0.1919 'X-RAY DIFFRACTION' 1.86 2.00 . . 141 2757 99.00 . . . . 0.1834 . . . . . . . . . . . . . . . 0.2198 'X-RAY DIFFRACTION' 2.00 2.20 . . 128 2742 100.00 . . . . 0.1890 . . . . . . . . . . . . . . . 0.2193 'X-RAY DIFFRACTION' 2.21 2.52 . . 131 2799 100.00 . . . . 0.1936 . . . . . . . . . . . . . . . 0.2510 'X-RAY DIFFRACTION' 2.52 3.18 . . 156 2820 100.00 . . . . 0.2029 . . . . . . . . . . . . . . . 0.1930 'X-RAY DIFFRACTION' 3.18 34.66 . . 163 2934 100.00 . . . . 0.1787 . . . . . . . . . . . . . . . 0.2216 # _struct.entry_id 9VNG _struct.title 'Small GTPase RhoA Y42C mutant in complex with covalent inhibitor' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9VNG _struct_keywords.text 'Small GTPase, RhoA, Y42C mutant, covalent inhibitor, CELL INVASION' _struct_keywords.pdbx_keywords 'CELL INVASION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RHOA_HUMAN _struct_ref.pdbx_db_accession P61586 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECS AKTKDGVREVFEMATRAALQA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9VNG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 182 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P61586 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9VNG GLY A 1 ? UNP P61586 ? ? 'expression tag' 0 1 1 9VNG CYS A 43 ? UNP P61586 TYR 42 'engineered mutation' 42 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 850 ? 1 MORE -19 ? 1 'SSA (A^2)' 9040 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 18 ? ASP A 29 ? GLY A 17 ASP A 28 1 ? 12 HELX_P HELX_P2 AA2 LEU A 70 ? TYR A 75 ? LEU A 69 TYR A 74 5 ? 6 HELX_P HELX_P3 AA3 SER A 89 ? LYS A 99 ? SER A 88 LYS A 98 1 ? 11 HELX_P HELX_P4 AA4 LYS A 99 ? CYS A 108 ? LYS A 98 CYS A 107 1 ? 10 HELX_P HELX_P5 AA5 LYS A 119 ? ARG A 123 ? LYS A 118 ARG A 122 5 ? 5 HELX_P HELX_P6 AA6 ASP A 125 ? MET A 135 ? ASP A 124 MET A 134 1 ? 11 HELX_P HELX_P7 AA7 LYS A 141 ? GLY A 153 ? LYS A 140 GLY A 152 1 ? 13 HELX_P HELX_P8 AA8 GLY A 167 ? LEU A 180 ? GLY A 166 LEU A 179 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 43 SG ? ? ? 1_555 C A1D9L . C10 ? ? A CYS 42 A A1D9L 202 1_555 ? ? ? ? ? ? ? 1.768 ? ? metalc1 metalc ? ? A THR 20 OG1 ? ? ? 1_555 D MG . MG ? ? A THR 19 A MG 203 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc2 metalc ? ? A PRO 37 O ? ? ? 1_555 D MG . MG ? ? A PRO 36 A MG 203 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc3 metalc ? ? B GDP . O1B ? ? ? 1_555 D MG . MG ? ? A GDP 201 A MG 203 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 203 A HOH 322 1_555 ? ? ? ? ? ? ? 1.975 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 203 A HOH 329 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 203 A HOH 334 1_555 ? ? ? ? ? ? ? 2.132 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 20 ? A THR 19 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? A PRO 37 ? A PRO 36 ? 1_555 88.9 ? 2 OG1 ? A THR 20 ? A THR 19 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O1B ? B GDP . ? A GDP 201 ? 1_555 88.6 ? 3 O ? A PRO 37 ? A PRO 36 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O1B ? B GDP . ? A GDP 201 ? 1_555 174.6 ? 4 OG1 ? A THR 20 ? A THR 19 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 322 ? 1_555 175.0 ? 5 O ? A PRO 37 ? A PRO 36 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 322 ? 1_555 88.2 ? 6 O1B ? B GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 322 ? 1_555 94.6 ? 7 OG1 ? A THR 20 ? A THR 19 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 329 ? 1_555 83.5 ? 8 O ? A PRO 37 ? A PRO 36 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 329 ? 1_555 93.3 ? 9 O1B ? B GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 329 ? 1_555 91.2 ? 10 O ? E HOH . ? A HOH 322 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 329 ? 1_555 92.6 ? 11 OG1 ? A THR 20 ? A THR 19 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 334 ? 1_555 88.5 ? 12 O ? A PRO 37 ? A PRO 36 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 334 ? 1_555 86.1 ? 13 O1B ? B GDP . ? A GDP 201 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 334 ? 1_555 89.0 ? 14 O ? E HOH . ? A HOH 322 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 334 ? 1_555 95.3 ? 15 O ? E HOH . ? A HOH 329 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 O ? E HOH . ? A HOH 334 ? 1_555 172.1 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id A1D9L _pdbx_modification_feature.label_asym_id C _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 43 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id A1D9L _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 202 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 42 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C10 _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id A1D9L _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 44 ? VAL A 49 ? VAL A 43 VAL A 48 AA1 2 LYS A 52 ? TRP A 59 ? LYS A 51 TRP A 58 AA1 3 ILE A 5 ? GLY A 13 ? ILE A 4 GLY A 12 AA1 4 VAL A 80 ? SER A 86 ? VAL A 79 SER A 85 AA1 5 ILE A 113 ? ASN A 118 ? ILE A 112 ASN A 117 AA1 6 GLY A 156 ? GLU A 159 ? GLY A 155 GLU A 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 45 ? N ALA A 44 O LEU A 56 ? O LEU A 55 AA1 2 3 O GLU A 55 ? O GLU A 54 N ILE A 5 ? N ILE A 4 AA1 3 4 N VAL A 12 ? N VAL A 11 O CYS A 84 ? O CYS A 83 AA1 4 5 N PHE A 85 ? N PHE A 84 O ASN A 118 ? O ASN A 117 AA1 5 6 N GLY A 117 ? N GLY A 116 O MET A 158 ? O MET A 157 # _pdbx_entry_details.entry_id 9VNG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 305 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 339 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 98 ? ? -129.29 -53.91 2 1 LYS A 164 ? ? 79.21 -4.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A ALA 2 ? A ALA 3 4 1 Y 1 A GLN 63 ? A GLN 64 5 1 Y 1 A GLU 64 ? A GLU 65 6 1 Y 1 A ASP 65 ? A ASP 66 7 1 Y 1 A TYR 66 ? A TYR 67 8 1 Y 1 A ASP 67 ? A ASP 68 9 1 Y 1 A ARG 68 ? A ARG 69 10 1 Y 1 A ALA 181 ? A ALA 182 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1D9L C10 C N N 1 A1D9L N12 N N N 2 A1D9L C01 C Y N 3 A1D9L C02 C Y N 4 A1D9L C03 C Y N 5 A1D9L C04 C Y N 6 A1D9L C05 C Y N 7 A1D9L C06 C Y N 8 A1D9L C08 C Y N 9 A1D9L C09 C Y N 10 A1D9L C11 C N N 11 A1D9L N07 N Y N 12 A1D9L O13 O N N 13 A1D9L O14 O N N 14 A1D9L H1 H N N 15 A1D9L H2 H N N 16 A1D9L H3 H N N 17 A1D9L H4 H N N 18 A1D9L H5 H N N 19 A1D9L H6 H N N 20 A1D9L H7 H N N 21 A1D9L H8 H N N 22 A1D9L H9 H N N 23 A1D9L H10 H N N 24 ALA N N N N 25 ALA CA C N S 26 ALA C C N N 27 ALA O O N N 28 ALA CB C N N 29 ALA OXT O N N 30 ALA H H N N 31 ALA H2 H N N 32 ALA HA H N N 33 ALA HB1 H N N 34 ALA HB2 H N N 35 ALA HB3 H N N 36 ALA HXT H N N 37 ARG N N N N 38 ARG CA C N S 39 ARG C C N N 40 ARG O O N N 41 ARG CB C N N 42 ARG CG C N N 43 ARG CD C N N 44 ARG NE N N N 45 ARG CZ C N N 46 ARG NH1 N N N 47 ARG NH2 N N N 48 ARG OXT O N N 49 ARG H H N N 50 ARG H2 H N N 51 ARG HA H N N 52 ARG HB2 H N N 53 ARG HB3 H N N 54 ARG HG2 H N N 55 ARG HG3 H N N 56 ARG HD2 H N N 57 ARG HD3 H N N 58 ARG HE H N N 59 ARG HH11 H N N 60 ARG HH12 H N N 61 ARG HH21 H N N 62 ARG HH22 H N N 63 ARG HXT H N N 64 ASN N N N N 65 ASN CA C N S 66 ASN C C N N 67 ASN O O N N 68 ASN CB C N N 69 ASN CG C N N 70 ASN OD1 O N N 71 ASN ND2 N N N 72 ASN OXT O N N 73 ASN H H N N 74 ASN H2 H N N 75 ASN HA H N N 76 ASN HB2 H N N 77 ASN HB3 H N N 78 ASN HD21 H N N 79 ASN HD22 H N N 80 ASN HXT H N N 81 ASP N N N N 82 ASP CA C N S 83 ASP C C N N 84 ASP O O N N 85 ASP CB C N N 86 ASP CG C N N 87 ASP OD1 O N N 88 ASP OD2 O N N 89 ASP OXT O N N 90 ASP H H N N 91 ASP H2 H N N 92 ASP HA H N N 93 ASP HB2 H N N 94 ASP HB3 H N N 95 ASP HD2 H N N 96 ASP HXT H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GDP PB P N N 112 GDP O1B O N N 113 GDP O2B O N N 114 GDP O3B O N N 115 GDP O3A O N N 116 GDP PA P N N 117 GDP O1A O N N 118 GDP O2A O N N 119 GDP "O5'" O N N 120 GDP "C5'" C N N 121 GDP "C4'" C N R 122 GDP "O4'" O N N 123 GDP "C3'" C N S 124 GDP "O3'" O N N 125 GDP "C2'" C N R 126 GDP "O2'" O N N 127 GDP "C1'" C N R 128 GDP N9 N Y N 129 GDP C8 C Y N 130 GDP N7 N Y N 131 GDP C5 C Y N 132 GDP C6 C N N 133 GDP O6 O N N 134 GDP N1 N N N 135 GDP C2 C N N 136 GDP N2 N N N 137 GDP N3 N N N 138 GDP C4 C Y N 139 GDP HOB2 H N N 140 GDP HOB3 H N N 141 GDP HOA2 H N N 142 GDP "H5'" H N N 143 GDP "H5''" H N N 144 GDP "H4'" H N N 145 GDP "H3'" H N N 146 GDP "HO3'" H N N 147 GDP "H2'" H N N 148 GDP "HO2'" H N N 149 GDP "H1'" H N N 150 GDP H8 H N N 151 GDP HN1 H N N 152 GDP HN21 H N N 153 GDP HN22 H N N 154 GLN N N N N 155 GLN CA C N S 156 GLN C C N N 157 GLN O O N N 158 GLN CB C N N 159 GLN CG C N N 160 GLN CD C N N 161 GLN OE1 O N N 162 GLN NE2 N N N 163 GLN OXT O N N 164 GLN H H N N 165 GLN H2 H N N 166 GLN HA H N N 167 GLN HB2 H N N 168 GLN HB3 H N N 169 GLN HG2 H N N 170 GLN HG3 H N N 171 GLN HE21 H N N 172 GLN HE22 H N N 173 GLN HXT H N N 174 GLU N N N N 175 GLU CA C N S 176 GLU C C N N 177 GLU O O N N 178 GLU CB C N N 179 GLU CG C N N 180 GLU CD C N N 181 GLU OE1 O N N 182 GLU OE2 O N N 183 GLU OXT O N N 184 GLU H H N N 185 GLU H2 H N N 186 GLU HA H N N 187 GLU HB2 H N N 188 GLU HB3 H N N 189 GLU HG2 H N N 190 GLU HG3 H N N 191 GLU HE2 H N N 192 GLU HXT H N N 193 GLY N N N N 194 GLY CA C N N 195 GLY C C N N 196 GLY O O N N 197 GLY OXT O N N 198 GLY H H N N 199 GLY H2 H N N 200 GLY HA2 H N N 201 GLY HA3 H N N 202 GLY HXT H N N 203 HIS N N N N 204 HIS CA C N S 205 HIS C C N N 206 HIS O O N N 207 HIS CB C N N 208 HIS CG C Y N 209 HIS ND1 N Y N 210 HIS CD2 C Y N 211 HIS CE1 C Y N 212 HIS NE2 N Y N 213 HIS OXT O N N 214 HIS H H N N 215 HIS H2 H N N 216 HIS HA H N N 217 HIS HB2 H N N 218 HIS HB3 H N N 219 HIS HD1 H N N 220 HIS HD2 H N N 221 HIS HE1 H N N 222 HIS HE2 H N N 223 HIS HXT H N N 224 HOH O O N N 225 HOH H1 H N N 226 HOH H2 H N N 227 ILE N N N N 228 ILE CA C N S 229 ILE C C N N 230 ILE O O N N 231 ILE CB C N S 232 ILE CG1 C N N 233 ILE CG2 C N N 234 ILE CD1 C N N 235 ILE OXT O N N 236 ILE H H N N 237 ILE H2 H N N 238 ILE HA H N N 239 ILE HB H N N 240 ILE HG12 H N N 241 ILE HG13 H N N 242 ILE HG21 H N N 243 ILE HG22 H N N 244 ILE HG23 H N N 245 ILE HD11 H N N 246 ILE HD12 H N N 247 ILE HD13 H N N 248 ILE HXT H N N 249 LEU N N N N 250 LEU CA C N S 251 LEU C C N N 252 LEU O O N N 253 LEU CB C N N 254 LEU CG C N N 255 LEU CD1 C N N 256 LEU CD2 C N N 257 LEU OXT O N N 258 LEU H H N N 259 LEU H2 H N N 260 LEU HA H N N 261 LEU HB2 H N N 262 LEU HB3 H N N 263 LEU HG H N N 264 LEU HD11 H N N 265 LEU HD12 H N N 266 LEU HD13 H N N 267 LEU HD21 H N N 268 LEU HD22 H N N 269 LEU HD23 H N N 270 LEU HXT H N N 271 LYS N N N N 272 LYS CA C N S 273 LYS C C N N 274 LYS O O N N 275 LYS CB C N N 276 LYS CG C N N 277 LYS CD C N N 278 LYS CE C N N 279 LYS NZ N N N 280 LYS OXT O N N 281 LYS H H N N 282 LYS H2 H N N 283 LYS HA H N N 284 LYS HB2 H N N 285 LYS HB3 H N N 286 LYS HG2 H N N 287 LYS HG3 H N N 288 LYS HD2 H N N 289 LYS HD3 H N N 290 LYS HE2 H N N 291 LYS HE3 H N N 292 LYS HZ1 H N N 293 LYS HZ2 H N N 294 LYS HZ3 H N N 295 LYS HXT H N N 296 MET N N N N 297 MET CA C N S 298 MET C C N N 299 MET O O N N 300 MET CB C N N 301 MET CG C N N 302 MET SD S N N 303 MET CE C N N 304 MET OXT O N N 305 MET H H N N 306 MET H2 H N N 307 MET HA H N N 308 MET HB2 H N N 309 MET HB3 H N N 310 MET HG2 H N N 311 MET HG3 H N N 312 MET HE1 H N N 313 MET HE2 H N N 314 MET HE3 H N N 315 MET HXT H N N 316 MG MG MG N N 317 PHE N N N N 318 PHE CA C N S 319 PHE C C N N 320 PHE O O N N 321 PHE CB C N N 322 PHE CG C Y N 323 PHE CD1 C Y N 324 PHE CD2 C Y N 325 PHE CE1 C Y N 326 PHE CE2 C Y N 327 PHE CZ C Y N 328 PHE OXT O N N 329 PHE H H N N 330 PHE H2 H N N 331 PHE HA H N N 332 PHE HB2 H N N 333 PHE HB3 H N N 334 PHE HD1 H N N 335 PHE HD2 H N N 336 PHE HE1 H N N 337 PHE HE2 H N N 338 PHE HZ H N N 339 PHE HXT H N N 340 PRO N N N N 341 PRO CA C N S 342 PRO C C N N 343 PRO O O N N 344 PRO CB C N N 345 PRO CG C N N 346 PRO CD C N N 347 PRO OXT O N N 348 PRO H H N N 349 PRO HA H N N 350 PRO HB2 H N N 351 PRO HB3 H N N 352 PRO HG2 H N N 353 PRO HG3 H N N 354 PRO HD2 H N N 355 PRO HD3 H N N 356 PRO HXT H N N 357 SER N N N N 358 SER CA C N S 359 SER C C N N 360 SER O O N N 361 SER CB C N N 362 SER OG O N N 363 SER OXT O N N 364 SER H H N N 365 SER H2 H N N 366 SER HA H N N 367 SER HB2 H N N 368 SER HB3 H N N 369 SER HG H N N 370 SER HXT H N N 371 THR N N N N 372 THR CA C N S 373 THR C C N N 374 THR O O N N 375 THR CB C N R 376 THR OG1 O N N 377 THR CG2 C N N 378 THR OXT O N N 379 THR H H N N 380 THR H2 H N N 381 THR HA H N N 382 THR HB H N N 383 THR HG1 H N N 384 THR HG21 H N N 385 THR HG22 H N N 386 THR HG23 H N N 387 THR HXT H N N 388 TRP N N N N 389 TRP CA C N S 390 TRP C C N N 391 TRP O O N N 392 TRP CB C N N 393 TRP CG C Y N 394 TRP CD1 C Y N 395 TRP CD2 C Y N 396 TRP NE1 N Y N 397 TRP CE2 C Y N 398 TRP CE3 C Y N 399 TRP CZ2 C Y N 400 TRP CZ3 C Y N 401 TRP CH2 C Y N 402 TRP OXT O N N 403 TRP H H N N 404 TRP H2 H N N 405 TRP HA H N N 406 TRP HB2 H N N 407 TRP HB3 H N N 408 TRP HD1 H N N 409 TRP HE1 H N N 410 TRP HE3 H N N 411 TRP HZ2 H N N 412 TRP HZ3 H N N 413 TRP HH2 H N N 414 TRP HXT H N N 415 TYR N N N N 416 TYR CA C N S 417 TYR C C N N 418 TYR O O N N 419 TYR CB C N N 420 TYR CG C Y N 421 TYR CD1 C Y N 422 TYR CD2 C Y N 423 TYR CE1 C Y N 424 TYR CE2 C Y N 425 TYR CZ C Y N 426 TYR OH O N N 427 TYR OXT O N N 428 TYR H H N N 429 TYR H2 H N N 430 TYR HA H N N 431 TYR HB2 H N N 432 TYR HB3 H N N 433 TYR HD1 H N N 434 TYR HD2 H N N 435 TYR HE1 H N N 436 TYR HE2 H N N 437 TYR HH H N N 438 TYR HXT H N N 439 VAL N N N N 440 VAL CA C N S 441 VAL C C N N 442 VAL O O N N 443 VAL CB C N N 444 VAL CG1 C N N 445 VAL CG2 C N N 446 VAL OXT O N N 447 VAL H H N N 448 VAL H2 H N N 449 VAL HA H N N 450 VAL HB H N N 451 VAL HG11 H N N 452 VAL HG12 H N N 453 VAL HG13 H N N 454 VAL HG21 H N N 455 VAL HG22 H N N 456 VAL HG23 H N N 457 VAL HXT H N N 458 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1D9L O14 N12 sing N N 1 A1D9L N12 O13 doub N N 2 A1D9L N12 C11 sing N N 3 A1D9L C11 C10 sing N N 4 A1D9L C01 C02 doub Y N 5 A1D9L C01 C06 sing Y N 6 A1D9L C02 C03 sing Y N 7 A1D9L C10 C06 sing N N 8 A1D9L C06 C05 doub Y N 9 A1D9L C03 C04 doub Y N 10 A1D9L C05 C04 sing Y N 11 A1D9L C05 C09 sing Y N 12 A1D9L C04 N07 sing Y N 13 A1D9L C09 C08 doub Y N 14 A1D9L N07 C08 sing Y N 15 A1D9L C10 H1 sing N N 16 A1D9L C10 H2 sing N N 17 A1D9L C01 H3 sing N N 18 A1D9L C02 H4 sing N N 19 A1D9L C03 H5 sing N N 20 A1D9L C08 H6 sing N N 21 A1D9L C09 H7 sing N N 22 A1D9L C11 H8 sing N N 23 A1D9L C11 H9 sing N N 24 A1D9L N07 H10 sing N N 25 ALA N CA sing N N 26 ALA N H sing N N 27 ALA N H2 sing N N 28 ALA CA C sing N N 29 ALA CA CB sing N N 30 ALA CA HA sing N N 31 ALA C O doub N N 32 ALA C OXT sing N N 33 ALA CB HB1 sing N N 34 ALA CB HB2 sing N N 35 ALA CB HB3 sing N N 36 ALA OXT HXT sing N N 37 ARG N CA sing N N 38 ARG N H sing N N 39 ARG N H2 sing N N 40 ARG CA C sing N N 41 ARG CA CB sing N N 42 ARG CA HA sing N N 43 ARG C O doub N N 44 ARG C OXT sing N N 45 ARG CB CG sing N N 46 ARG CB HB2 sing N N 47 ARG CB HB3 sing N N 48 ARG CG CD sing N N 49 ARG CG HG2 sing N N 50 ARG CG HG3 sing N N 51 ARG CD NE sing N N 52 ARG CD HD2 sing N N 53 ARG CD HD3 sing N N 54 ARG NE CZ sing N N 55 ARG NE HE sing N N 56 ARG CZ NH1 sing N N 57 ARG CZ NH2 doub N N 58 ARG NH1 HH11 sing N N 59 ARG NH1 HH12 sing N N 60 ARG NH2 HH21 sing N N 61 ARG NH2 HH22 sing N N 62 ARG OXT HXT sing N N 63 ASN N CA sing N N 64 ASN N H sing N N 65 ASN N H2 sing N N 66 ASN CA C sing N N 67 ASN CA CB sing N N 68 ASN CA HA sing N N 69 ASN C O doub N N 70 ASN C OXT sing N N 71 ASN CB CG sing N N 72 ASN CB HB2 sing N N 73 ASN CB HB3 sing N N 74 ASN CG OD1 doub N N 75 ASN CG ND2 sing N N 76 ASN ND2 HD21 sing N N 77 ASN ND2 HD22 sing N N 78 ASN OXT HXT sing N N 79 ASP N CA sing N N 80 ASP N H sing N N 81 ASP N H2 sing N N 82 ASP CA C sing N N 83 ASP CA CB sing N N 84 ASP CA HA sing N N 85 ASP C O doub N N 86 ASP C OXT sing N N 87 ASP CB CG sing N N 88 ASP CB HB2 sing N N 89 ASP CB HB3 sing N N 90 ASP CG OD1 doub N N 91 ASP CG OD2 sing N N 92 ASP OD2 HD2 sing N N 93 ASP OXT HXT sing N N 94 CYS N CA sing N N 95 CYS N H sing N N 96 CYS N H2 sing N N 97 CYS CA C sing N N 98 CYS CA CB sing N N 99 CYS CA HA sing N N 100 CYS C O doub N N 101 CYS C OXT sing N N 102 CYS CB SG sing N N 103 CYS CB HB2 sing N N 104 CYS CB HB3 sing N N 105 CYS SG HG sing N N 106 CYS OXT HXT sing N N 107 GDP PB O1B doub N N 108 GDP PB O2B sing N N 109 GDP PB O3B sing N N 110 GDP PB O3A sing N N 111 GDP O2B HOB2 sing N N 112 GDP O3B HOB3 sing N N 113 GDP O3A PA sing N N 114 GDP PA O1A doub N N 115 GDP PA O2A sing N N 116 GDP PA "O5'" sing N N 117 GDP O2A HOA2 sing N N 118 GDP "O5'" "C5'" sing N N 119 GDP "C5'" "C4'" sing N N 120 GDP "C5'" "H5'" sing N N 121 GDP "C5'" "H5''" sing N N 122 GDP "C4'" "O4'" sing N N 123 GDP "C4'" "C3'" sing N N 124 GDP "C4'" "H4'" sing N N 125 GDP "O4'" "C1'" sing N N 126 GDP "C3'" "O3'" sing N N 127 GDP "C3'" "C2'" sing N N 128 GDP "C3'" "H3'" sing N N 129 GDP "O3'" "HO3'" sing N N 130 GDP "C2'" "O2'" sing N N 131 GDP "C2'" "C1'" sing N N 132 GDP "C2'" "H2'" sing N N 133 GDP "O2'" "HO2'" sing N N 134 GDP "C1'" N9 sing N N 135 GDP "C1'" "H1'" sing N N 136 GDP N9 C8 sing Y N 137 GDP N9 C4 sing Y N 138 GDP C8 N7 doub Y N 139 GDP C8 H8 sing N N 140 GDP N7 C5 sing Y N 141 GDP C5 C6 sing N N 142 GDP C5 C4 doub Y N 143 GDP C6 O6 doub N N 144 GDP C6 N1 sing N N 145 GDP N1 C2 sing N N 146 GDP N1 HN1 sing N N 147 GDP C2 N2 sing N N 148 GDP C2 N3 doub N N 149 GDP N2 HN21 sing N N 150 GDP N2 HN22 sing N N 151 GDP N3 C4 sing N N 152 GLN N CA sing N N 153 GLN N H sing N N 154 GLN N H2 sing N N 155 GLN CA C sing N N 156 GLN CA CB sing N N 157 GLN CA HA sing N N 158 GLN C O doub N N 159 GLN C OXT sing N N 160 GLN CB CG sing N N 161 GLN CB HB2 sing N N 162 GLN CB HB3 sing N N 163 GLN CG CD sing N N 164 GLN CG HG2 sing N N 165 GLN CG HG3 sing N N 166 GLN CD OE1 doub N N 167 GLN CD NE2 sing N N 168 GLN NE2 HE21 sing N N 169 GLN NE2 HE22 sing N N 170 GLN OXT HXT sing N N 171 GLU N CA sing N N 172 GLU N H sing N N 173 GLU N H2 sing N N 174 GLU CA C sing N N 175 GLU CA CB sing N N 176 GLU CA HA sing N N 177 GLU C O doub N N 178 GLU C OXT sing N N 179 GLU CB CG sing N N 180 GLU CB HB2 sing N N 181 GLU CB HB3 sing N N 182 GLU CG CD sing N N 183 GLU CG HG2 sing N N 184 GLU CG HG3 sing N N 185 GLU CD OE1 doub N N 186 GLU CD OE2 sing N N 187 GLU OE2 HE2 sing N N 188 GLU OXT HXT sing N N 189 GLY N CA sing N N 190 GLY N H sing N N 191 GLY N H2 sing N N 192 GLY CA C sing N N 193 GLY CA HA2 sing N N 194 GLY CA HA3 sing N N 195 GLY C O doub N N 196 GLY C OXT sing N N 197 GLY OXT HXT sing N N 198 HIS N CA sing N N 199 HIS N H sing N N 200 HIS N H2 sing N N 201 HIS CA C sing N N 202 HIS CA CB sing N N 203 HIS CA HA sing N N 204 HIS C O doub N N 205 HIS C OXT sing N N 206 HIS CB CG sing N N 207 HIS CB HB2 sing N N 208 HIS CB HB3 sing N N 209 HIS CG ND1 sing Y N 210 HIS CG CD2 doub Y N 211 HIS ND1 CE1 doub Y N 212 HIS ND1 HD1 sing N N 213 HIS CD2 NE2 sing Y N 214 HIS CD2 HD2 sing N N 215 HIS CE1 NE2 sing Y N 216 HIS CE1 HE1 sing N N 217 HIS NE2 HE2 sing N N 218 HIS OXT HXT sing N N 219 HOH O H1 sing N N 220 HOH O H2 sing N N 221 ILE N CA sing N N 222 ILE N H sing N N 223 ILE N H2 sing N N 224 ILE CA C sing N N 225 ILE CA CB sing N N 226 ILE CA HA sing N N 227 ILE C O doub N N 228 ILE C OXT sing N N 229 ILE CB CG1 sing N N 230 ILE CB CG2 sing N N 231 ILE CB HB sing N N 232 ILE CG1 CD1 sing N N 233 ILE CG1 HG12 sing N N 234 ILE CG1 HG13 sing N N 235 ILE CG2 HG21 sing N N 236 ILE CG2 HG22 sing N N 237 ILE CG2 HG23 sing N N 238 ILE CD1 HD11 sing N N 239 ILE CD1 HD12 sing N N 240 ILE CD1 HD13 sing N N 241 ILE OXT HXT sing N N 242 LEU N CA sing N N 243 LEU N H sing N N 244 LEU N H2 sing N N 245 LEU CA C sing N N 246 LEU CA CB sing N N 247 LEU CA HA sing N N 248 LEU C O doub N N 249 LEU C OXT sing N N 250 LEU CB CG sing N N 251 LEU CB HB2 sing N N 252 LEU CB HB3 sing N N 253 LEU CG CD1 sing N N 254 LEU CG CD2 sing N N 255 LEU CG HG sing N N 256 LEU CD1 HD11 sing N N 257 LEU CD1 HD12 sing N N 258 LEU CD1 HD13 sing N N 259 LEU CD2 HD21 sing N N 260 LEU CD2 HD22 sing N N 261 LEU CD2 HD23 sing N N 262 LEU OXT HXT sing N N 263 LYS N CA sing N N 264 LYS N H sing N N 265 LYS N H2 sing N N 266 LYS CA C sing N N 267 LYS CA CB sing N N 268 LYS CA HA sing N N 269 LYS C O doub N N 270 LYS C OXT sing N N 271 LYS CB CG sing N N 272 LYS CB HB2 sing N N 273 LYS CB HB3 sing N N 274 LYS CG CD sing N N 275 LYS CG HG2 sing N N 276 LYS CG HG3 sing N N 277 LYS CD CE sing N N 278 LYS CD HD2 sing N N 279 LYS CD HD3 sing N N 280 LYS CE NZ sing N N 281 LYS CE HE2 sing N N 282 LYS CE HE3 sing N N 283 LYS NZ HZ1 sing N N 284 LYS NZ HZ2 sing N N 285 LYS NZ HZ3 sing N N 286 LYS OXT HXT sing N N 287 MET N CA sing N N 288 MET N H sing N N 289 MET N H2 sing N N 290 MET CA C sing N N 291 MET CA CB sing N N 292 MET CA HA sing N N 293 MET C O doub N N 294 MET C OXT sing N N 295 MET CB CG sing N N 296 MET CB HB2 sing N N 297 MET CB HB3 sing N N 298 MET CG SD sing N N 299 MET CG HG2 sing N N 300 MET CG HG3 sing N N 301 MET SD CE sing N N 302 MET CE HE1 sing N N 303 MET CE HE2 sing N N 304 MET CE HE3 sing N N 305 MET OXT HXT sing N N 306 PHE N CA sing N N 307 PHE N H sing N N 308 PHE N H2 sing N N 309 PHE CA C sing N N 310 PHE CA CB sing N N 311 PHE CA HA sing N N 312 PHE C O doub N N 313 PHE C OXT sing N N 314 PHE CB CG sing N N 315 PHE CB HB2 sing N N 316 PHE CB HB3 sing N N 317 PHE CG CD1 doub Y N 318 PHE CG CD2 sing Y N 319 PHE CD1 CE1 sing Y N 320 PHE CD1 HD1 sing N N 321 PHE CD2 CE2 doub Y N 322 PHE CD2 HD2 sing N N 323 PHE CE1 CZ doub Y N 324 PHE CE1 HE1 sing N N 325 PHE CE2 CZ sing Y N 326 PHE CE2 HE2 sing N N 327 PHE CZ HZ sing N N 328 PHE OXT HXT sing N N 329 PRO N CA sing N N 330 PRO N CD sing N N 331 PRO N H sing N N 332 PRO CA C sing N N 333 PRO CA CB sing N N 334 PRO CA HA sing N N 335 PRO C O doub N N 336 PRO C OXT sing N N 337 PRO CB CG sing N N 338 PRO CB HB2 sing N N 339 PRO CB HB3 sing N N 340 PRO CG CD sing N N 341 PRO CG HG2 sing N N 342 PRO CG HG3 sing N N 343 PRO CD HD2 sing N N 344 PRO CD HD3 sing N N 345 PRO OXT HXT sing N N 346 SER N CA sing N N 347 SER N H sing N N 348 SER N H2 sing N N 349 SER CA C sing N N 350 SER CA CB sing N N 351 SER CA HA sing N N 352 SER C O doub N N 353 SER C OXT sing N N 354 SER CB OG sing N N 355 SER CB HB2 sing N N 356 SER CB HB3 sing N N 357 SER OG HG sing N N 358 SER OXT HXT sing N N 359 THR N CA sing N N 360 THR N H sing N N 361 THR N H2 sing N N 362 THR CA C sing N N 363 THR CA CB sing N N 364 THR CA HA sing N N 365 THR C O doub N N 366 THR C OXT sing N N 367 THR CB OG1 sing N N 368 THR CB CG2 sing N N 369 THR CB HB sing N N 370 THR OG1 HG1 sing N N 371 THR CG2 HG21 sing N N 372 THR CG2 HG22 sing N N 373 THR CG2 HG23 sing N N 374 THR OXT HXT sing N N 375 TRP N CA sing N N 376 TRP N H sing N N 377 TRP N H2 sing N N 378 TRP CA C sing N N 379 TRP CA CB sing N N 380 TRP CA HA sing N N 381 TRP C O doub N N 382 TRP C OXT sing N N 383 TRP CB CG sing N N 384 TRP CB HB2 sing N N 385 TRP CB HB3 sing N N 386 TRP CG CD1 doub Y N 387 TRP CG CD2 sing Y N 388 TRP CD1 NE1 sing Y N 389 TRP CD1 HD1 sing N N 390 TRP CD2 CE2 doub Y N 391 TRP CD2 CE3 sing Y N 392 TRP NE1 CE2 sing Y N 393 TRP NE1 HE1 sing N N 394 TRP CE2 CZ2 sing Y N 395 TRP CE3 CZ3 doub Y N 396 TRP CE3 HE3 sing N N 397 TRP CZ2 CH2 doub Y N 398 TRP CZ2 HZ2 sing N N 399 TRP CZ3 CH2 sing Y N 400 TRP CZ3 HZ3 sing N N 401 TRP CH2 HH2 sing N N 402 TRP OXT HXT sing N N 403 TYR N CA sing N N 404 TYR N H sing N N 405 TYR N H2 sing N N 406 TYR CA C sing N N 407 TYR CA CB sing N N 408 TYR CA HA sing N N 409 TYR C O doub N N 410 TYR C OXT sing N N 411 TYR CB CG sing N N 412 TYR CB HB2 sing N N 413 TYR CB HB3 sing N N 414 TYR CG CD1 doub Y N 415 TYR CG CD2 sing Y N 416 TYR CD1 CE1 sing Y N 417 TYR CD1 HD1 sing N N 418 TYR CD2 CE2 doub Y N 419 TYR CD2 HD2 sing N N 420 TYR CE1 CZ doub Y N 421 TYR CE1 HE1 sing N N 422 TYR CE2 CZ sing Y N 423 TYR CE2 HE2 sing N N 424 TYR CZ OH sing N N 425 TYR OH HH sing N N 426 TYR OXT HXT sing N N 427 VAL N CA sing N N 428 VAL N H sing N N 429 VAL N H2 sing N N 430 VAL CA C sing N N 431 VAL CA CB sing N N 432 VAL CA HA sing N N 433 VAL C O doub N N 434 VAL C OXT sing N N 435 VAL CB CG1 sing N N 436 VAL CB CG2 sing N N 437 VAL CB HB sing N N 438 VAL CG1 HG11 sing N N 439 VAL CG1 HG12 sing N N 440 VAL CG1 HG13 sing N N 441 VAL CG2 HG21 sing N N 442 VAL CG2 HG22 sing N N 443 VAL CG2 HG23 sing N N 444 VAL OXT HXT sing N N 445 # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FTN _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9VNG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.031211 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015748 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012089 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ #