HEADER GENE REGULATION 30-JUN-25 9VNO TITLE THE CRYSTAL STRUCTURE OF THE EHD3 TANDEM PHD-H3K4ME1 COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN EHD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROETIN EARLY HEADING 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H3.2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: EHD3, OS08G0105000, LOC_OS08G01420, OJ1300_E01.8-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 10 ORGANISM_COMMON: RICE; SOURCE 11 ORGANISM_TAXID: 39947; SOURCE 12 GENE: OS01G0866200, LOC_OS01G64640, OSJ_004096, P0505D12.33, SOURCE 13 OS04G0419600, LOC_OS04G34240, OSJ_014206, OSJNBB0108J11.17, SOURCE 14 OS05G0438700, LOC_OS05G36280, OSJNBB0042J17.11, H3R-11, SOURCE 15 OS06G0159501, LOC_OS06G06460, OSJ_019386, P0702F05.33, OS06G0160001, SOURCE 16 P0681F10.3, P0702F05.38, OS06G0160100, LOC_OS06G06510, P0681F10.4, SOURCE 17 P0702F05.39, H3R-21, OS11G0155900, LOC_OS11G05730, OSJNBB0030I09; SOURCE 18 EXPRESSION_SYSTEM: ORYZA SATIVA; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 4530 KEYWDS HISTONE MODIFICATION, HISTONE READER, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.P.LI,A.W.DONG REVDAT 1 04-FEB-26 9VNO 0 JRNL AUTH J.B.WU,Y.P.LI JRNL TITL H3K4ME1 DIRECTS H3K36ME2 AND H3K36ME3 DEPOSITION IN LAND JRNL TITL 2 PLANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.1_4122: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.550 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 30102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3900 - 3.3300 1.00 2864 135 0.1444 0.1550 REMARK 3 2 3.3300 - 2.6500 0.99 2809 135 0.1775 0.1905 REMARK 3 3 2.6400 - 2.3100 0.99 2746 166 0.1608 0.1764 REMARK 3 4 2.3100 - 2.1000 0.99 2721 188 0.1530 0.1758 REMARK 3 5 2.1000 - 1.9500 0.98 2702 160 0.1457 0.1563 REMARK 3 6 1.9500 - 1.8300 0.98 2774 104 0.1472 0.1777 REMARK 3 7 1.8300 - 1.7400 0.97 2697 138 0.1540 0.1828 REMARK 3 8 1.7400 - 1.6700 0.96 2671 143 0.1748 0.1856 REMARK 3 9 1.6700 - 1.6000 0.92 2616 98 0.1873 0.2215 REMARK 3 10 1.6000 - 1.5500 0.80 2200 140 0.2118 0.2358 REMARK 3 11 1.5500 - 1.5000 0.65 1809 86 0.2262 0.2463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1103 REMARK 3 ANGLE : 1.657 1479 REMARK 3 CHIRALITY : 0.109 150 REMARK 3 PLANARITY : 0.013 188 REMARK 3 DIHEDRAL : 6.253 155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.7249 41.9633 43.4344 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.0782 REMARK 3 T33: 0.0814 T12: -0.0078 REMARK 3 T13: 0.0034 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.1872 L22: 1.0148 REMARK 3 L33: 0.9982 L12: 0.1063 REMARK 3 L13: 0.4381 L23: -0.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.1393 S13: 0.0636 REMARK 3 S21: 0.0228 S22: -0.0496 S23: -0.0612 REMARK 3 S31: 0.0169 S32: -0.0130 S33: -0.0173 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9VNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 06-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300061098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM PHOSPHATE DIBASIC REMARK 280 DEHYDRATE, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 37.32000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.80800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.40400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.32000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.21200 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.32000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.80800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 37.32000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.21200 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 18.40400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 417 REMARK 465 HIS A 541 REMARK 465 GLY A 542 REMARK 465 ASN A 543 REMARK 465 SER A 544 REMARK 465 LYS A 545 REMARK 465 HIS A 546 REMARK 465 ALA A 547 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 756 O HOH A 796 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 447 -58.10 71.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 436 MET A 437 146.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 423 SG REMARK 620 2 CYS A 426 SG 109.8 REMARK 620 3 HIS A 450 ND1 101.9 93.8 REMARK 620 4 CYS A 453 SG 116.6 114.5 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 439 SG REMARK 620 2 CYS A 444 SG 111.5 REMARK 620 3 CYS A 472 SG 112.2 104.7 REMARK 620 4 CYS A 475 SG 107.3 111.0 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 477 SG REMARK 620 2 CYS A 480 SG 114.4 REMARK 620 3 HIS A 500 ND1 102.2 99.5 REMARK 620 4 CYS A 503 SG 108.7 113.9 117.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 492 SG REMARK 620 2 CYS A 495 SG 108.5 REMARK 620 3 CYS A 518 SG 111.3 113.4 REMARK 620 4 CYS A 521 SG 105.6 112.8 105.0 REMARK 620 N 1 2 3 DBREF 9VNO A 417 547 UNP Q6ZJM9 EHD3_ORYSJ 417 547 DBREF 9VNO B 1 12 UNP Q2RAD9 H32_ORYSJ 2 13 SEQRES 1 A 131 THR ALA LEU SER ASN LEU CYS LYS HIS CYS GLY THR CYS SEQRES 2 A 131 GLU ASP ASP ASP LYS ARG PHE MET VAL CYS GLY HIS PRO SEQRES 3 A 131 TYR CYS VAL TYR LYS PHE TYR HIS ILE ARG CYS LEU LYS SEQRES 4 A 131 THR SER GLN LEU ALA ILE GLU GLN GLN LYS LYS LEU GLY SEQRES 5 A 131 CYS TRP TYR CYS PRO SER CYS LEU CYS ARG GLY CYS PHE SEQRES 6 A 131 GLN ASP LYS ASP ASP ASP GLN ILE VAL MET CYS ASP GLY SEQRES 7 A 131 CYS ASP GLU GLY TYR HIS ILE TYR CYS MET ARG PRO ALA SEQRES 8 A 131 ARG ASN THR ILE PRO LYS GLY LYS TRP TYR CYS THR PHE SEQRES 9 A 131 CYS LYS ILE ARG ARG ALA ALA GLU GLY MET HIS LYS TYR SEQRES 10 A 131 GLU ASP SER VAL LEU LYS ILE HIS GLY ASN SER LYS HIS SEQRES 11 A 131 ALA SEQRES 1 B 12 ALA ARG THR MLZ GLN THR ALA ARG LYS SER THR GLY MODRES 9VNO MLZ B 4 LYS MODIFIED RESIDUE HET MLZ B 4 10 HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HETNAM MLZ N-METHYL-LYSINE HETNAM ZN ZINC ION FORMUL 2 MLZ C7 H16 N2 O2 FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *126(H2 O) HELIX 1 AA1 ARG A 452 LEU A 454 5 3 HELIX 2 AA2 LYS A 455 ALA A 460 1 6 HELIX 3 AA3 ILE A 461 LYS A 465 5 5 HELIX 4 AA4 ASP A 485 ASP A 487 5 3 HELIX 5 AA5 TYR A 502 MET A 504 5 3 HELIX 6 AA6 CYS A 518 ILE A 540 1 23 SHEET 1 AA1 2 PHE A 436 VAL A 438 0 SHEET 2 AA1 2 PHE A 448 HIS A 450 -1 O TYR A 449 N MET A 437 SHEET 1 AA2 3 GLY A 498 HIS A 500 0 SHEET 2 AA2 3 ILE A 489 MET A 491 -1 N VAL A 490 O TYR A 499 SHEET 3 AA2 3 ARG B 2 THR B 3 -1 O ARG B 2 N MET A 491 LINK C THR B 3 N MLZ B 4 1555 1555 1.32 LINK C MLZ B 4 N GLN B 5 1555 1555 1.33 LINK SG CYS A 423 ZN ZN A 604 1555 1555 2.32 LINK SG CYS A 426 ZN ZN A 604 1555 1555 2.34 LINK SG CYS A 439 ZN ZN A 603 1555 1555 2.34 LINK SG CYS A 444 ZN ZN A 603 1555 1555 2.34 LINK ND1 HIS A 450 ZN ZN A 604 1555 1555 2.11 LINK SG CYS A 453 ZN ZN A 604 1555 1555 2.29 LINK SG CYS A 472 ZN ZN A 603 1555 1555 2.36 LINK SG CYS A 475 ZN ZN A 603 1555 1555 2.31 LINK SG CYS A 477 ZN ZN A 602 1555 1555 2.33 LINK SG CYS A 480 ZN ZN A 602 1555 1555 2.30 LINK SG CYS A 492 ZN ZN A 601 1555 1555 2.37 LINK SG CYS A 495 ZN ZN A 601 1555 1555 2.23 LINK ND1 HIS A 500 ZN ZN A 602 1555 1555 2.09 LINK SG CYS A 503 ZN ZN A 602 1555 1555 2.29 LINK SG CYS A 518 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 521 ZN ZN A 601 1555 1555 2.33 CISPEP 1 ARG A 505 PRO A 506 0 -0.64 CRYST1 74.640 74.640 73.616 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013584 0.00000 CONECT 41 1080 CONECT 66 1080 CONECT 168 1079 CONECT 207 1079 CONECT 265 1080 CONECT 293 1080 CONECT 448 1079 CONECT 467 1079 CONECT 481 1078 CONECT 502 1078 CONECT 601 1077 CONECT 619 1077 CONECT 659 1078 CONECT 688 1078 CONECT 814 1077 CONECT 838 1077 CONECT 1014 1019 CONECT 1019 1014 1020 CONECT 1020 1019 1021 1027 CONECT 1021 1020 1022 CONECT 1022 1021 1023 CONECT 1023 1022 1024 CONECT 1024 1023 1025 CONECT 1025 1024 1026 CONECT 1026 1025 CONECT 1027 1020 1028 1029 CONECT 1028 1027 CONECT 1029 1027 CONECT 1077 601 619 814 838 CONECT 1078 481 502 659 688 CONECT 1079 168 207 448 467 CONECT 1080 41 66 265 293 MASTER 332 0 5 6 5 0 0 6 1198 2 32 12 END