HEADER HYDROLASE 27-NOV-24 9VP9 TITLE GH64 FAMILY BETA-1,3-GLUCANASE FROM MASSILIA VIOLACEINIGRA IN COMPLEX TITLE 2 WITH A GLUCOSE DISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH64 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MASSILIA VIOLACEINIGRA; SOURCE 3 ORGANISM_TAXID: 2045208; SOURCE 4 GENE: CR152_26670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-28A KEYWDS BETA-1, 3-GLUCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.J.ZHANG,T.LI,H.YIN REVDAT 1 08-JUL-26 9VP9 0 JRNL AUTH X.J.ZHANG,T.LI,H.YIN JRNL TITL GH64 FAMILY BETA-1,3-GLUCANASE FROM MASSILIA VIOLACEINIGRA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3108 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2790 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4240 ; 1.705 ; 1.781 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6413 ; 0.594 ; 1.729 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 7.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ;13.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;14.511 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3732 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 770 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 2.696 ; 2.719 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1515 ; 2.667 ; 2.715 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1896 ; 3.686 ; 4.864 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1897 ; 3.686 ; 4.863 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 3.793 ; 3.054 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1591 ; 3.793 ; 3.056 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2337 ; 5.593 ; 5.427 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3527 ; 7.125 ;28.500 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3458 ; 7.033 ;28.320 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9VP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 07-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300061194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979145 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.5 REMARK 200 DATA SCALING SOFTWARE : XIA2 3.6.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44713 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 41.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : 1.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M NAAC, PH 7.0, EVAPORATION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.41333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.70667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.41333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.70667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 BGC C 2 O HOH A 631 2.05 REMARK 500 O HOH A 733 O HOH A 743 2.14 REMARK 500 CL CL A 412 O HOH A 744 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 115 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 220 -122.50 -117.17 REMARK 500 PHE A 222 42.78 -99.45 REMARK 500 ASN A 252 -165.92 -125.34 REMARK 500 ASN A 289 -167.98 -126.50 REMARK 500 SER A 296 125.20 -34.84 REMARK 500 ASP A 326 67.36 -119.54 REMARK 500 ASN A 369 49.73 76.05 REMARK 500 THR A 380 -76.35 -100.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 28 0.18 SIDE CHAIN REMARK 500 ARG A 213 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 417 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 34 O REMARK 620 2 TYR A 37 OH 104.6 REMARK 620 3 HOH A 675 O 78.6 105.3 REMARK 620 4 HOH A 695 O 105.6 76.9 174.8 REMARK 620 5 HOH A 717 O 169.2 81.0 91.1 84.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 414 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 65 O REMARK 620 2 ASN A 67 O 86.5 REMARK 620 3 HOH A 665 O 78.2 91.0 REMARK 620 4 HOH A 676 O 88.7 81.0 165.1 REMARK 620 5 HOH A 710 O 83.5 170.0 87.9 97.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 413 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 71 O REMARK 620 2 SER A 71 OG 75.6 REMARK 620 3 HOH A 636 O 72.9 84.5 REMARK 620 4 HOH A 673 O 78.4 96.7 150.0 REMARK 620 5 HOH A 705 O 163.3 89.2 113.1 96.9 REMARK 620 6 HOH A 740 O 101.1 174.6 98.6 78.4 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 418 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 140 OD1 REMARK 620 2 THR A 157 O 105.1 REMARK 620 3 HIS A 161 O 115.8 90.7 REMARK 620 4 HOH A 651 O 160.9 74.2 83.2 REMARK 620 5 HOH A 708 O 86.2 101.4 151.3 75.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 415 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 175 O REMARK 620 2 HOH A 612 O 115.1 REMARK 620 3 HOH A 679 O 131.0 65.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 419 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 354 O REMARK 620 2 HOH A 596 O 122.9 REMARK 620 3 HOH A 602 O 92.0 132.6 REMARK 620 4 HOH A 614 O 80.9 74.0 82.2 REMARK 620 5 HOH A 623 O 111.1 102.7 91.2 166.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 411 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 366 O REMARK 620 2 ASN A 369 OD1 102.3 REMARK 620 3 HOH A 572 O 82.5 175.1 REMARK 620 4 HOH A 610 O 84.9 91.0 89.0 REMARK 620 5 HOH A 703 O 89.7 79.9 100.6 168.3 REMARK 620 6 HOH A 712 O 176.8 80.1 95.0 93.1 92.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 416 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 510 O REMARK 620 2 HOH A 543 O 94.2 REMARK 620 3 HOH A 601 O 78.3 161.5 REMARK 620 4 HOH A 620 O 96.0 100.9 96.7 REMARK 620 5 HOH A 643 O 94.2 73.5 90.1 168.7 REMARK 620 6 HOH A 720 O 179.3 85.2 102.4 84.0 85.8 REMARK 620 N 1 2 3 4 5 DBREF1 9VP9 A 1 388 UNP A0A2D2DVX9_9BURK DBREF2 9VP9 A A0A2D2DVX9 1 388 SEQRES 1 A 388 MET PRO SER GLY THR THR PRO PRO PRO THR ASP PRO GLY SEQRES 2 A 388 THR TRP ASN GLN LEU THR THR PHE LYS LEU VAL ASN GLY SEQRES 3 A 388 THR ARG GLY GLN TYR ALA ASP SER GLN VAL TYR TRP ALA SEQRES 4 A 388 ILE ILE GLY LYS ASP TRP GLY THR GLY LYS TYR VAL HIS SEQRES 5 A 388 VAL ASP ALA GLY GLY ARG PHE ILE PRO MET ALA LEU SER SEQRES 6 A 388 ASP ASN GLY ALA LEU SER LYS ASP GLY LYS PRO TYR THR SEQRES 7 A 388 ASN TYR PHE HIS THR LEU ALA GLN LEU LYS SER ILE THR SEQRES 8 A 388 ILE PRO PRO LEU ASN SER ALA ARG LEU PHE LEU SER VAL SEQRES 9 A 388 GLY SER PRO MET TYR LEU GLN VAL ASN ALA ASP ALA ASN SEQRES 10 A 388 GLY ASN LEU GLY TYR ALA GLY ALA ASN ILE GLU ASN PRO SEQRES 11 A 388 SER ASP PRO ASN ILE ASP VAL TYR PHE ASP PHE ILE GLU SEQRES 12 A 388 MET SER ILE GLY ALA LYS ASP GLY PHE PHE GLY ASN THR SEQRES 13 A 388 THR ARG VAL ASP HIS PHE GLY PHE PRO LEU THR LEU ARG SEQRES 14 A 388 LEU GLN GLY LEU GLY GLY TYR ASP GLN THR VAL GLY GLU SEQRES 15 A 388 THR GLU THR ARG ALA SER LEU ILE SER GLN PHE VAL ALA SEQRES 16 A 388 SER VAL PRO ALA GLN PHE LYS GLY LEU ALA GLN ALA PRO SEQRES 17 A 388 TYR ALA PRO TYR ARG ILE ILE ALA PRO ALA HIS ALA SER SEQRES 18 A 388 PHE GLN ASN ASN GLY ALA ASN ALA THR TYR LEU ASP GLY SEQRES 19 A 388 TYR ILE ASN HIS ILE TRP ASN LYS TYR THR SER GLN LYS SEQRES 20 A 388 LEU VAL PHE THR ASN GLN GLN GLY THR PHE SER GLY GLN SEQRES 21 A 388 VAL VAL ASN GLY VAL PHE GLN PHE THR ASP GLY ALA GLY SEQRES 22 A 388 THR TYR LYS VAL ARG ARG PRO THR THR ALA MET ALA LEU SEQRES 23 A 388 LEU GLY ASN GLY ALA LEU ASP ASP PRO SER GLY THR VAL SEQRES 24 A 388 GLY GLY THR PRO ALA TYR HIS LYS GLN LEU GLN ILE GLN SEQRES 25 A 388 ALA GLN LEU CYS ALA ALA LEU ASN ARG HIS VAL VAL GLU SEQRES 26 A 388 ASP PRO ALA ARG TRP SER ASP SER ALA TYR PHE TYR PRO SEQRES 27 A 388 ALA GLY GLN PRO ALA ASN TRP TYR ALA LYS PHE TRP HIS SEQRES 28 A 388 ASP HIS SER ILE ASN LYS LEU ALA TYR GLY PHE ALA TYR SEQRES 29 A 388 ASP ASP VAL TRP ASN TYR SER SER SER VAL HIS SER THR SEQRES 30 A 388 ALA PRO THR THR ALA THR VAL THR ILE GLY TRP HET BGC C 1 12 HET BGC C 2 11 HET EDO A 401 4 HET ACT A 402 4 HET ACT A 403 4 HET EDO A 404 4 HET ACT A 405 4 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET EDO A 409 4 HET PGE A 410 10 HET CA A 411 1 HET CL A 412 1 HET NA A 413 1 HET NA A 414 1 HET NA A 415 1 HET NA A 416 1 HET NA A 417 1 HET NA A 418 1 HET NA A 419 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BGC 2(C6 H12 O6) FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 12 PGE C6 H14 O4 FORMUL 13 CA CA 2+ FORMUL 14 CL CL 1- FORMUL 15 NA 7(NA 1+) FORMUL 22 HOH *255(H2 O) HELIX 1 AA1 ALA A 63 ASN A 67 5 5 HELIX 2 AA2 THR A 185 VAL A 197 1 13 HELIX 3 AA3 PRO A 198 GLY A 203 1 6 HELIX 4 AA4 LEU A 204 GLN A 206 5 3 HELIX 5 AA5 PRO A 217 ALA A 220 5 4 HELIX 6 AA6 LEU A 232 TYR A 243 1 12 HELIX 7 AA7 THR A 281 GLY A 288 1 8 HELIX 8 AA8 ASN A 289 ASP A 293 5 5 HELIX 9 AA9 THR A 302 ARG A 321 1 20 HELIX 10 AB1 ASP A 326 TRP A 330 5 5 HELIX 11 AB2 ASP A 332 PHE A 336 5 5 HELIX 12 AB3 ASN A 344 HIS A 353 1 10 HELIX 13 AB4 SER A 354 LEU A 358 5 5 SHEET 1 AA1 5 SER A 89 ILE A 92 0 SHEET 2 AA1 5 THR A 19 GLY A 26 -1 N PHE A 21 O ILE A 90 SHEET 3 AA1 5 PRO A 379 GLY A 387 1 O ALA A 382 N THR A 20 SHEET 4 AA1 5 LEU A 166 GLY A 172 -1 N ARG A 169 O THR A 383 SHEET 5 AA1 5 ASP A 177 GLY A 181 -1 O GLN A 178 N LEU A 170 SHEET 1 AA2 4 PHE A 59 PRO A 61 0 SHEET 2 AA2 4 TYR A 50 VAL A 53 -1 N HIS A 52 O ILE A 60 SHEET 3 AA2 4 VAL A 36 LYS A 43 -1 N GLY A 42 O VAL A 51 SHEET 4 AA2 4 HIS A 82 THR A 83 -1 O HIS A 82 N TRP A 38 SHEET 1 AA3 7 PHE A 59 PRO A 61 0 SHEET 2 AA3 7 TYR A 50 VAL A 53 -1 N HIS A 52 O ILE A 60 SHEET 3 AA3 7 VAL A 36 LYS A 43 -1 N GLY A 42 O VAL A 51 SHEET 4 AA3 7 LEU A 95 VAL A 104 -1 O SER A 103 N TYR A 37 SHEET 5 AA3 7 TYR A 138 GLY A 147 -1 O ILE A 146 N LEU A 95 SHEET 6 AA3 7 GLY A 151 ASN A 155 -1 O PHE A 153 N SER A 145 SHEET 7 AA3 7 SER A 373 SER A 376 -1 O VAL A 374 N GLY A 154 SHEET 1 AA4 2 LEU A 70 LYS A 72 0 SHEET 2 AA4 2 LYS A 75 TYR A 77 -1 O TYR A 77 N LEU A 70 SHEET 1 AA5 2 GLN A 111 ALA A 114 0 SHEET 2 AA5 2 LEU A 120 ALA A 123 -1 O ALA A 123 N GLN A 111 SHEET 1 AA6 2 HIS A 161 PHE A 162 0 SHEET 2 AA6 2 ILE A 214 ILE A 215 -1 O ILE A 214 N PHE A 162 SHEET 1 AA7 4 LEU A 248 ASN A 252 0 SHEET 2 AA7 4 GLY A 255 VAL A 262 -1 O GLY A 255 N ASN A 252 SHEET 3 AA7 4 VAL A 265 THR A 269 -1 O GLN A 267 N GLN A 260 SHEET 4 AA7 4 THR A 274 ARG A 278 -1 O TYR A 275 N PHE A 268 LINK O3 BGC C 1 C1 BGC C 2 1555 1555 1.40 LINK O SER A 34 NA NA A 417 1555 1555 2.37 LINK OH TYR A 37 NA NA A 417 1555 1555 2.50 LINK O SER A 65 NA NA A 414 1555 1555 2.52 LINK O ASN A 67 NA NA A 414 1555 1555 2.51 LINK O SER A 71 NA NA A 413 1555 1555 2.55 LINK OG SER A 71 NA NA A 413 1555 1555 2.39 LINK OD1 ASP A 140 NA NA A 418 1555 1555 2.36 LINK O THR A 157 NA NA A 418 1555 1555 2.42 LINK O HIS A 161 NA NA A 418 1555 1555 2.44 LINK O GLY A 175 NA NA A 415 1555 1555 2.40 LINK O SER A 354 NA NA A 419 1555 1555 2.45 LINK O ASP A 366 CA CA A 411 1555 1555 2.32 LINK OD1 ASN A 369 CA CA A 411 1555 1555 2.37 LINK CA CA A 411 O HOH A 572 1555 1555 2.60 LINK CA CA A 411 O HOH A 610 1555 1555 2.67 LINK CA CA A 411 O HOH A 703 1555 1555 2.60 LINK CA CA A 411 O HOH A 712 1555 1555 2.70 LINK NA NA A 413 O HOH A 636 1555 1555 2.26 LINK NA NA A 413 O HOH A 673 1555 1555 2.63 LINK NA NA A 413 O HOH A 705 1555 1555 2.16 LINK NA NA A 413 O HOH A 740 1555 1555 2.61 LINK NA NA A 414 O HOH A 665 1555 1555 2.52 LINK NA NA A 414 O HOH A 676 1555 6555 2.19 LINK NA NA A 414 O HOH A 710 1555 1555 2.36 LINK NA NA A 415 O HOH A 612 1555 2444 3.11 LINK NA NA A 415 O HOH A 679 1555 1555 2.48 LINK NA NA A 416 O HOH A 510 1555 1555 2.34 LINK NA NA A 416 O HOH A 543 1555 2444 2.44 LINK NA NA A 416 O HOH A 601 1555 1555 2.59 LINK NA NA A 416 O HOH A 620 1555 1555 2.31 LINK NA NA A 416 O HOH A 643 1555 1555 2.45 LINK NA NA A 416 O HOH A 720 1555 1555 2.38 LINK NA NA A 417 O HOH A 675 1555 1555 2.37 LINK NA NA A 417 O HOH A 695 1555 1555 2.54 LINK NA NA A 417 O HOH A 717 1555 1555 2.72 LINK NA NA A 418 O HOH A 651 1555 1555 2.69 LINK NA NA A 418 O HOH A 708 1555 1555 2.36 LINK NA NA A 419 O HOH A 596 1555 1555 2.38 LINK NA NA A 419 O HOH A 602 1555 2444 2.42 LINK NA NA A 419 O HOH A 614 1555 1555 2.29 LINK NA NA A 419 O HOH A 623 1555 2444 2.38 CISPEP 1 ALA A 207 PRO A 208 0 2.76 CISPEP 2 ALA A 210 PRO A 211 0 0.15 CRYST1 126.670 126.670 71.120 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007895 0.004558 0.000000 0.00000 SCALE2 0.000000 0.009116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014061 0.00000 CONECT 167 3029 CONECT 197 3029 CONECT 415 3026 CONECT 429 3026 CONECT 454 3025 CONECT 456 3025 CONECT 998 3030 CONECT 1127 3030 CONECT 1160 3030 CONECT 1275 3027 CONECT 2678 3031 CONECT 2774 3023 CONECT 2806 3023 CONECT 2948 2949 2953 2955 CONECT 2949 2948 2950 2956 CONECT 2950 2949 2951 2957 CONECT 2951 2950 2952 2958 CONECT 2952 2951 2959 CONECT 2953 2948 2954 2958 CONECT 2954 2953 CONECT 2955 2948 CONECT 2956 2949 2965 CONECT 2957 2950 CONECT 2958 2951 2953 CONECT 2959 2952 CONECT 2960 2961 2965 2966 CONECT 2961 2960 2962 2967 CONECT 2962 2961 2963 2968 CONECT 2963 2962 2964 2969 CONECT 2964 2963 2970 CONECT 2965 2956 2960 2969 CONECT 2966 2960 CONECT 2967 2961 CONECT 2968 2962 CONECT 2969 2963 2965 CONECT 2970 2964 CONECT 2971 2972 2973 CONECT 2972 2971 CONECT 2973 2971 2974 CONECT 2974 2973 CONECT 2975 2976 2977 2978 CONECT 2976 2975 CONECT 2977 2975 CONECT 2978 2975 CONECT 2979 2980 2981 2982 CONECT 2980 2979 CONECT 2981 2979 CONECT 2982 2979 CONECT 2983 2984 2985 CONECT 2984 2983 CONECT 2985 2983 2986 CONECT 2986 2985 CONECT 2987 2988 2989 2990 CONECT 2988 2987 CONECT 2989 2987 CONECT 2990 2987 CONECT 2991 2992 2993 CONECT 2992 2991 CONECT 2993 2991 2994 2995 CONECT 2994 2993 CONECT 2995 2993 2996 CONECT 2996 2995 CONECT 2997 2998 2999 CONECT 2998 2997 CONECT 2999 2997 3000 3001 CONECT 3000 2999 CONECT 3001 2999 3002 CONECT 3002 3001 CONECT 3003 3004 3005 CONECT 3004 3003 CONECT 3005 3003 3006 3007 CONECT 3006 3005 CONECT 3007 3005 3008 CONECT 3008 3007 CONECT 3009 3010 3011 CONECT 3010 3009 CONECT 3011 3009 3012 CONECT 3012 3011 CONECT 3013 3014 3015 CONECT 3014 3013 CONECT 3015 3013 3016 CONECT 3016 3015 3017 CONECT 3017 3016 3018 CONECT 3018 3017 3022 CONECT 3019 3020 CONECT 3020 3019 3021 CONECT 3021 3020 3022 CONECT 3022 3018 3021 CONECT 3023 2774 2806 3103 3141 CONECT 3023 3234 3243 CONECT 3025 454 456 3167 3204 CONECT 3025 3236 3271 CONECT 3026 415 429 3196 3241 CONECT 3027 1275 3210 CONECT 3028 3041 3132 3151 3174 CONECT 3028 3251 CONECT 3029 167 197 3206 3226 CONECT 3029 3248 CONECT 3030 998 1127 1160 3182 CONECT 3030 3239 CONECT 3031 2678 3127 3145 CONECT 3041 3028 CONECT 3103 3023 CONECT 3127 3031 CONECT 3132 3028 CONECT 3141 3023 CONECT 3145 3031 CONECT 3151 3028 CONECT 3167 3025 CONECT 3174 3028 CONECT 3182 3030 CONECT 3196 3026 CONECT 3204 3025 CONECT 3206 3029 CONECT 3210 3027 CONECT 3226 3029 CONECT 3234 3023 CONECT 3236 3025 CONECT 3239 3030 CONECT 3241 3026 CONECT 3243 3023 CONECT 3248 3029 CONECT 3251 3028 CONECT 3271 3025 MASTER 421 0 21 13 26 0 0 6 3249 1 124 30 END