HEADER LIGASE 04-JUL-25 9VQ4 TITLE THE CRYSTAL STRUCTURE OF METRS-LIKE PROTEIN FROM STREPTOMYCES CANDIDUS TITLE 2 BOUND TO D-GLU COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE-TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYFG,PYRN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CANDIDUS; SOURCE 3 ORGANISM_TAXID: 67283; SOURCE 4 GENE: PYRN, PRFJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHIONINE-TRNA LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.M.ZHANG,H.S.HUANG REVDAT 1 13-MAY-26 9VQ4 0 JRNL AUTH Z.M.ZHANG,H.S.HUANG JRNL TITL THE CRYSTAL STRUCTURE OF METRS-LIKE PROTEIN FROM JRNL TITL 2 STREPTOMYCES CANDIDUS BOUND TO D-GLU JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.737 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7330 - 4.8169 1.00 5291 147 0.1580 0.1586 REMARK 3 2 4.8169 - 3.8246 1.00 5143 146 0.1344 0.1805 REMARK 3 3 3.8246 - 3.3416 1.00 5087 152 0.1525 0.1845 REMARK 3 4 3.3416 - 3.0362 1.00 5108 142 0.1736 0.2263 REMARK 3 5 3.0362 - 2.8187 1.00 5052 145 0.1855 0.2125 REMARK 3 6 2.8187 - 2.6525 1.00 5062 142 0.1921 0.2359 REMARK 3 7 2.6525 - 2.5197 1.00 5070 142 0.1900 0.2737 REMARK 3 8 2.5197 - 2.4101 1.00 5057 131 0.1887 0.2291 REMARK 3 9 2.4101 - 2.3173 1.00 5064 150 0.1791 0.1952 REMARK 3 10 2.3173 - 2.2373 1.00 5106 128 0.1848 0.2230 REMARK 3 11 2.2373 - 2.1674 1.00 4991 151 0.1910 0.2303 REMARK 3 12 2.1674 - 2.1054 1.00 5010 150 0.1986 0.2445 REMARK 3 13 2.1054 - 2.0500 1.00 5095 120 0.2117 0.2448 REMARK 3 14 2.0500 - 2.0100 1.00 5003 156 0.2218 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.226 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.053 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8407 REMARK 3 ANGLE : 0.734 11456 REMARK 3 CHIRALITY : 0.027 1245 REMARK 3 PLANARITY : 0.004 1528 REMARK 3 DIHEDRAL : 12.144 3012 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.3217 10.5279 -26.6831 REMARK 3 T TENSOR REMARK 3 T11: 0.1340 T22: 0.1260 REMARK 3 T33: 0.1318 T12: 0.0121 REMARK 3 T13: 0.0008 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.3090 L22: 0.1146 REMARK 3 L33: 0.0898 L12: 0.1829 REMARK 3 L13: -0.1257 L23: -0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0041 S13: -0.0196 REMARK 3 S21: -0.0175 S22: -0.0015 S23: -0.0085 REMARK 3 S31: 0.0049 S32: 0.0406 S33: 0.0208 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9VQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 09-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300061213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CAMD REMARK 200 BEAMLINE : GCPCC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH8.5, 200 MM MGCL2, 20% REMARK 280 PEG 8000, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.21705 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 109 REMARK 465 ASN A 110 REMARK 465 LEU A 111 REMARK 465 SER A 112 REMARK 465 ALA A 113 REMARK 465 LEU A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 VAL A 117 REMARK 465 HIS A 118 REMARK 465 ALA A 119 REMARK 465 GLU A 120 REMARK 465 ARG A 121 REMARK 465 ARG A 122 REMARK 465 GLU A 123 REMARK 465 GLN A 124 REMARK 465 ALA A 125 REMARK 465 VAL A 126 REMARK 465 GLU A 127 REMARK 465 ARG A 128 REMARK 465 GLN A 129 REMARK 465 GLY A 130 REMARK 465 ASP A 372 REMARK 465 THR A 461 REMARK 465 GLY A 462 REMARK 465 ASP A 662 REMARK 465 GLU A 663 REMARK 465 VAL A 664 REMARK 465 VAL A 665 REMARK 465 ALA A 666 REMARK 465 GLY A 667 REMARK 465 ARG A 668 REMARK 465 GLU B 109 REMARK 465 ASN B 110 REMARK 465 LEU B 111 REMARK 465 SER B 112 REMARK 465 ALA B 113 REMARK 465 LEU B 114 REMARK 465 ALA B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 HIS B 118 REMARK 465 ALA B 119 REMARK 465 GLU B 120 REMARK 465 ARG B 121 REMARK 465 ARG B 122 REMARK 465 GLU B 123 REMARK 465 GLN B 124 REMARK 465 ALA B 125 REMARK 465 VAL B 126 REMARK 465 GLU B 127 REMARK 465 ARG B 128 REMARK 465 GLN B 129 REMARK 465 GLY B 130 REMARK 465 ASP B 662 REMARK 465 GLU B 663 REMARK 465 VAL B 664 REMARK 465 VAL B 665 REMARK 465 ALA B 666 REMARK 465 GLY B 667 REMARK 465 ARG B 668 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 ARG A 500 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 LYS B 464 CG CD CE NZ REMARK 470 LYS B 653 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 801 O HOH B 811 2.17 REMARK 500 O HOH B 861 O HOH B 1150 2.18 REMARK 500 O HOH B 1121 O HOH B 1127 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 801 O HOH B 1196 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 142 45.85 -79.31 REMARK 500 GLU A 265 -127.46 52.95 REMARK 500 PHE A 427 -61.06 -127.79 REMARK 500 GLU A 509 -62.46 -90.63 REMARK 500 ARG A 565 47.35 -144.17 REMARK 500 LYS A 567 76.34 -154.57 REMARK 500 PRO B 142 48.64 -82.91 REMARK 500 GLU B 265 -119.66 45.98 REMARK 500 ALA B 289 14.26 58.94 REMARK 500 THR B 310 -164.99 -106.08 REMARK 500 PHE B 427 -58.79 -126.83 REMARK 500 GLU B 509 -60.81 -93.83 REMARK 500 ARG B 513 -51.75 -124.45 REMARK 500 ARG B 565 50.68 -148.93 REMARK 500 LYS B 567 72.61 -150.95 REMARK 500 ASP B 649 -2.37 78.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1168 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1300 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B1301 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B1302 DISTANCE = 7.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 256 SG REMARK 620 2 CYS A 259 SG 114.8 REMARK 620 3 CYS A 302 SG 109.9 103.9 REMARK 620 4 CYS A 305 SG 106.3 114.3 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 272 SG REMARK 620 2 CYS A 275 SG 112.9 REMARK 620 3 CYS A 285 SG 107.4 102.3 REMARK 620 4 CYS A 288 SG 104.3 114.8 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 704 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 256 SG REMARK 620 2 CYS B 259 SG 112.5 REMARK 620 3 CYS B 302 SG 111.1 107.1 REMARK 620 4 CYS B 305 SG 105.1 114.8 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 703 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 272 SG REMARK 620 2 CYS B 275 SG 112.9 REMARK 620 3 CYS B 285 SG 107.7 100.2 REMARK 620 4 CYS B 288 SG 105.2 116.3 114.5 REMARK 620 N 1 2 3 DBREF1 9VQ4 A 109 668 UNP A0A516ELE7_9ACTN DBREF2 9VQ4 A A0A516ELE7 109 668 DBREF1 9VQ4 B 109 668 UNP A0A516ELE7_9ACTN DBREF2 9VQ4 B A0A516ELE7 109 668 SEQRES 1 A 560 GLU ASN LEU SER ALA LEU ALA ALA VAL HIS ALA GLU ARG SEQRES 2 A 560 ARG GLU GLN ALA VAL GLU ARG GLN GLY ARG PRO VAL LEU SEQRES 3 A 560 LEU LEU PRO SER PHE PRO THR PRO ASN GLY GLU LEU HIS SEQRES 4 A 560 LEU GLY HIS LEU SER GLY PRO PHE LEU ASN ALA ASP ALA SEQRES 5 A 560 CYS ARG ARG ALA LEU LEU ALA ALA GLY GLU ARG ALA HIS SEQRES 6 A 560 LEU LEU LEU GLY THR VAL GLY HIS GLN SER GLN VAL SER SEQRES 7 A 560 ALA ALA ALA GLU ALA GLU GLY LEU SER PHE HIS GLU LEU SEQRES 8 A 560 ALA GLU ARG ASN THR ASP ALA ILE ILE GLU GLY LEU GLN SEQRES 9 A 560 ALA ALA GLY ILE ASP TRP ASP VAL PHE VAL ARG PRO SER SEQRES 10 A 560 GLU PRO ALA TYR PRO ALA MET ALA THR SER VAL PHE GLU SEQRES 11 A 560 SER LEU ARG ASP ARG GLY VAL LEU VAL ARG ARG THR GLU SEQRES 12 A 560 PRO THR ASN TYR CYS GLU PRO CYS GLY ARG PHE LEU LEU SEQRES 13 A 560 GLU ALA PHE VAL ALA GLY HIS CYS PRO HIS CYS GLY SER SEQRES 14 A 560 ASN GLN THR ALA GLY ILE GLU CYS GLU LEU CYS ALA LEU SEQRES 15 A 560 PRO TYR ASP ASP ARG ASP LEU VAL ASP PRO SER CYS ALA SEQRES 16 A 560 THR CYS GLY ALA ALA ALA THR GLN ARG PRO LEU THR ARG SEQRES 17 A 560 TYR PHE MET PRO LEU GLU PRO LEU ARG ASP GLU LEU SER SEQRES 18 A 560 GLY TYR LEU ARG GLY ALA ALA MET HIS GLY ARG LEU ARG SEQRES 19 A 560 ALA TYR THR GLU ARG VAL LEU ALA LYS THR LEU PRO ASP SEQRES 20 A 560 LEU PRO VAL SER ILE PRO ALA GLU HIS GLY ILE PRO ILE SEQRES 21 A 560 HIS VAL GLU ASP ALA SER GLY PRO ALA GLU GLN ARG MET SEQRES 22 A 560 TYR SER ALA PHE GLU LEU ALA ALA ARG PHE LEU THR ALA SEQRES 23 A 560 LEU ASP GLY PHE ALA ASP GLY TRP GLU ALA TYR ALA ARG SEQRES 24 A 560 GLN GLU ASN PRO ARG THR VAL LEU PHE PHE GLY PHE ASP SEQRES 25 A 560 ASN ALA PHE LEU ARG ALA PHE ALA PHE PRO ALA VAL LEU SEQRES 26 A 560 GLY ALA PHE THR ASP ALA LEU PRO LEU PRO GLU ALA LEU SEQRES 27 A 560 VAL CYS ASN ASP PHE TYR LEU LEU ASP GLY GLU LYS PHE SEQRES 28 A 560 SER THR GLY ARG LYS HIS ALA VAL TRP ALA ARG GLN ALA SEQRES 29 A 560 VAL THR PRO ALA ASN ALA ASP GLN LEU ARG LEU TYR LEU SEQRES 30 A 560 ALA ALA THR SER PRO ASP VAL ARG ARG ARG ASP PHE THR SEQRES 31 A 560 THR ARG GLY TYR ALA GLU PHE VAL THR ALA GLU LEU ILE SEQRES 32 A 560 GLY ARG TRP GLN ARG ARG LEU ASP ASP VAL GLY GLY ARG SEQRES 33 A 560 VAL ALA GLU HIS PHE GLY GLY LEU THR PRO GLU ALA GLY SEQRES 34 A 560 GLY TRP HIS ALA GLU ALA GLU ARG PHE TYR GLY GLN ILE SEQRES 35 A 560 LYS GLU PHE ALA SER CYS ALA THR LEU ASP TYR LEU PRO SEQRES 36 A 560 GLY ARG PHE LYS PRO ARG ALA VAL VAL ALA ALA ALA CYS SEQRES 37 A 560 ALA PHE ILE ARG GLN ALA GLU ASP PHE ALA GLU VAL SER SEQRES 38 A 560 ALA ASP ALA THR PRO GLY SER GLY ILE ALA ARG THR CYS SEQRES 39 A 560 ALA ALA LEU GLU LEU MET ALA LEU ARG THR LEU ALA MET SEQRES 40 A 560 ALA VAL TRP PRO LEU ALA PRO GLU PHE GLY ARG ARG VAL SEQRES 41 A 560 ALA ALA ALA LEU GLY GLU ASP THR ILE ALA LEU GLU PRO SEQRES 42 A 560 THR PRO ARG TRP VAL ARG PRO ASP THR GLU ILE LYS PHE SEQRES 43 A 560 ALA THR ASP HIS PHE SER PRO ASP GLU VAL VAL ALA GLY SEQRES 44 A 560 ARG SEQRES 1 B 560 GLU ASN LEU SER ALA LEU ALA ALA VAL HIS ALA GLU ARG SEQRES 2 B 560 ARG GLU GLN ALA VAL GLU ARG GLN GLY ARG PRO VAL LEU SEQRES 3 B 560 LEU LEU PRO SER PHE PRO THR PRO ASN GLY GLU LEU HIS SEQRES 4 B 560 LEU GLY HIS LEU SER GLY PRO PHE LEU ASN ALA ASP ALA SEQRES 5 B 560 CYS ARG ARG ALA LEU LEU ALA ALA GLY GLU ARG ALA HIS SEQRES 6 B 560 LEU LEU LEU GLY THR VAL GLY HIS GLN SER GLN VAL SER SEQRES 7 B 560 ALA ALA ALA GLU ALA GLU GLY LEU SER PHE HIS GLU LEU SEQRES 8 B 560 ALA GLU ARG ASN THR ASP ALA ILE ILE GLU GLY LEU GLN SEQRES 9 B 560 ALA ALA GLY ILE ASP TRP ASP VAL PHE VAL ARG PRO SER SEQRES 10 B 560 GLU PRO ALA TYR PRO ALA MET ALA THR SER VAL PHE GLU SEQRES 11 B 560 SER LEU ARG ASP ARG GLY VAL LEU VAL ARG ARG THR GLU SEQRES 12 B 560 PRO THR ASN TYR CYS GLU PRO CYS GLY ARG PHE LEU LEU SEQRES 13 B 560 GLU ALA PHE VAL ALA GLY HIS CYS PRO HIS CYS GLY SER SEQRES 14 B 560 ASN GLN THR ALA GLY ILE GLU CYS GLU LEU CYS ALA LEU SEQRES 15 B 560 PRO TYR ASP ASP ARG ASP LEU VAL ASP PRO SER CYS ALA SEQRES 16 B 560 THR CYS GLY ALA ALA ALA THR GLN ARG PRO LEU THR ARG SEQRES 17 B 560 TYR PHE MET PRO LEU GLU PRO LEU ARG ASP GLU LEU SER SEQRES 18 B 560 GLY TYR LEU ARG GLY ALA ALA MET HIS GLY ARG LEU ARG SEQRES 19 B 560 ALA TYR THR GLU ARG VAL LEU ALA LYS THR LEU PRO ASP SEQRES 20 B 560 LEU PRO VAL SER ILE PRO ALA GLU HIS GLY ILE PRO ILE SEQRES 21 B 560 HIS VAL GLU ASP ALA SER GLY PRO ALA GLU GLN ARG MET SEQRES 22 B 560 TYR SER ALA PHE GLU LEU ALA ALA ARG PHE LEU THR ALA SEQRES 23 B 560 LEU ASP GLY PHE ALA ASP GLY TRP GLU ALA TYR ALA ARG SEQRES 24 B 560 GLN GLU ASN PRO ARG THR VAL LEU PHE PHE GLY PHE ASP SEQRES 25 B 560 ASN ALA PHE LEU ARG ALA PHE ALA PHE PRO ALA VAL LEU SEQRES 26 B 560 GLY ALA PHE THR ASP ALA LEU PRO LEU PRO GLU ALA LEU SEQRES 27 B 560 VAL CYS ASN ASP PHE TYR LEU LEU ASP GLY GLU LYS PHE SEQRES 28 B 560 SER THR GLY ARG LYS HIS ALA VAL TRP ALA ARG GLN ALA SEQRES 29 B 560 VAL THR PRO ALA ASN ALA ASP GLN LEU ARG LEU TYR LEU SEQRES 30 B 560 ALA ALA THR SER PRO ASP VAL ARG ARG ARG ASP PHE THR SEQRES 31 B 560 THR ARG GLY TYR ALA GLU PHE VAL THR ALA GLU LEU ILE SEQRES 32 B 560 GLY ARG TRP GLN ARG ARG LEU ASP ASP VAL GLY GLY ARG SEQRES 33 B 560 VAL ALA GLU HIS PHE GLY GLY LEU THR PRO GLU ALA GLY SEQRES 34 B 560 GLY TRP HIS ALA GLU ALA GLU ARG PHE TYR GLY GLN ILE SEQRES 35 B 560 LYS GLU PHE ALA SER CYS ALA THR LEU ASP TYR LEU PRO SEQRES 36 B 560 GLY ARG PHE LYS PRO ARG ALA VAL VAL ALA ALA ALA CYS SEQRES 37 B 560 ALA PHE ILE ARG GLN ALA GLU ASP PHE ALA GLU VAL SER SEQRES 38 B 560 ALA ASP ALA THR PRO GLY SER GLY ILE ALA ARG THR CYS SEQRES 39 B 560 ALA ALA LEU GLU LEU MET ALA LEU ARG THR LEU ALA MET SEQRES 40 B 560 ALA VAL TRP PRO LEU ALA PRO GLU PHE GLY ARG ARG VAL SEQRES 41 B 560 ALA ALA ALA LEU GLY GLU ASP THR ILE ALA LEU GLU PRO SEQRES 42 B 560 THR PRO ARG TRP VAL ARG PRO ASP THR GLU ILE LYS PHE SEQRES 43 B 560 ALA THR ASP HIS PHE SER PRO ASP GLU VAL VAL ALA GLY SEQRES 44 B 560 ARG HET DGL A 701 10 HET AMP A 702 22 HET ZN A 703 1 HET ZN A 704 1 HET DGL B 701 10 HET AMP B 702 22 HET ZN B 703 1 HET ZN B 704 1 HETNAM DGL D-GLUTAMIC ACID HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 DGL 2(C5 H9 N O4) FORMUL 4 AMP 2(C10 H14 N5 O7 P) FORMUL 5 ZN 4(ZN 2+) FORMUL 11 HOH *870(H2 O) HELIX 1 AA1 HIS A 147 GLY A 153 1 7 HELIX 2 AA2 GLY A 153 ALA A 168 1 16 HELIX 3 AA3 GLN A 182 GLY A 193 1 12 HELIX 4 AA4 SER A 195 ALA A 214 1 20 HELIX 5 AA5 ALA A 228 ARG A 243 1 16 HELIX 6 AA6 LEU A 264 ALA A 266 5 3 HELIX 7 AA7 ASP A 293 LEU A 297 5 5 HELIX 8 AA8 LEU A 321 PRO A 323 5 3 HELIX 9 AA9 LEU A 324 ALA A 335 1 12 HELIX 10 AB1 HIS A 338 ALA A 350 1 13 HELIX 11 AB2 TYR A 382 ASP A 400 1 19 HELIX 12 AB3 GLY A 401 ASN A 410 1 10 HELIX 13 AB4 ASN A 421 PHE A 427 1 7 HELIX 14 AB5 PHE A 427 THR A 437 1 11 HELIX 15 AB6 TRP A 468 VAL A 473 1 6 HELIX 16 AB7 ASN A 477 THR A 488 1 12 HELIX 17 AB8 THR A 498 GLU A 509 1 12 HELIX 18 AB9 ARG A 513 PHE A 529 1 17 HELIX 19 AC1 HIS A 540 ASP A 560 1 21 HELIX 20 AC2 LEU A 562 PHE A 566 5 5 HELIX 21 AC3 LYS A 567 ALA A 592 1 26 HELIX 22 AC4 SER A 596 TRP A 618 1 23 HELIX 23 AC5 ALA A 621 LEU A 632 1 12 HELIX 24 AC6 HIS B 147 GLY B 153 1 7 HELIX 25 AC7 GLY B 153 ALA B 168 1 16 HELIX 26 AC8 GLN B 182 GLY B 193 1 12 HELIX 27 AC9 SER B 195 ALA B 214 1 20 HELIX 28 AD1 ALA B 228 ARG B 243 1 16 HELIX 29 AD2 LEU B 264 ALA B 266 5 3 HELIX 30 AD3 ASP B 293 LEU B 297 5 5 HELIX 31 AD4 LEU B 321 PRO B 323 5 3 HELIX 32 AD5 LEU B 324 ALA B 335 1 12 HELIX 33 AD6 HIS B 338 ALA B 350 1 13 HELIX 34 AD7 TYR B 382 ASP B 400 1 19 HELIX 35 AD8 GLY B 401 ASN B 410 1 10 HELIX 36 AD9 ASN B 421 PHE B 427 1 7 HELIX 37 AE1 PHE B 427 THR B 437 1 11 HELIX 38 AE2 TRP B 468 VAL B 473 1 6 HELIX 39 AE3 ASN B 477 THR B 488 1 12 HELIX 40 AE4 THR B 498 GLU B 509 1 12 HELIX 41 AE5 ARG B 513 PHE B 529 1 17 HELIX 42 AE6 HIS B 540 TYR B 561 1 22 HELIX 43 AE7 LEU B 562 PHE B 566 5 5 HELIX 44 AE8 LYS B 567 ALA B 592 1 26 HELIX 45 AE9 SER B 596 TRP B 618 1 23 HELIX 46 AF1 ALA B 621 LEU B 632 1 12 SHEET 1 AA1 5 VAL A 220 VAL A 222 0 SHEET 2 AA1 5 ALA A 172 GLY A 177 1 N LEU A 176 O VAL A 222 SHEET 3 AA1 5 VAL A 133 PRO A 137 1 N LEU A 135 O HIS A 173 SHEET 4 AA1 5 ARG A 412 GLY A 418 1 O ARG A 412 N LEU A 134 SHEET 5 AA1 5 ALA A 445 ASN A 449 1 O VAL A 447 N LEU A 415 SHEET 1 AA2 4 ARG A 261 PHE A 262 0 SHEET 2 AA2 4 VAL A 247 CYS A 256 -1 N CYS A 256 O ARG A 261 SHEET 3 AA2 4 THR A 310 MET A 319 -1 O THR A 310 N TYR A 255 SHEET 4 AA2 4 LEU A 356 PRO A 357 -1 O LEU A 356 N MET A 319 SHEET 1 AA3 2 VAL A 268 HIS A 271 0 SHEET 2 AA3 2 VAL A 298 CYS A 302 -1 O SER A 301 N ALA A 269 SHEET 1 AA4 2 THR A 280 ALA A 281 0 SHEET 2 AA4 2 GLU A 284 CYS A 285 -1 O GLU A 284 N ALA A 281 SHEET 1 AA5 3 SER A 359 ILE A 360 0 SHEET 2 AA5 3 GLU A 378 MET A 381 -1 O ARG A 380 N ILE A 360 SHEET 3 AA5 3 PRO A 367 HIS A 369 -1 N ILE A 368 O GLN A 379 SHEET 1 AA6 3 GLU A 457 LYS A 458 0 SHEET 2 AA6 3 LEU A 453 LEU A 454 -1 N LEU A 454 O GLU A 457 SHEET 3 AA6 3 ASP A 496 PHE A 497 1 O PHE A 497 N LEU A 453 SHEET 1 AA7 5 VAL B 220 VAL B 222 0 SHEET 2 AA7 5 ALA B 172 GLY B 177 1 N LEU B 176 O VAL B 222 SHEET 3 AA7 5 VAL B 133 PRO B 137 1 N VAL B 133 O HIS B 173 SHEET 4 AA7 5 ARG B 412 GLY B 418 1 O ARG B 412 N LEU B 134 SHEET 5 AA7 5 ALA B 445 ASN B 449 1 O VAL B 447 N LEU B 415 SHEET 1 AA8 4 ARG B 261 PHE B 262 0 SHEET 2 AA8 4 VAL B 247 CYS B 256 -1 N CYS B 256 O ARG B 261 SHEET 3 AA8 4 THR B 310 MET B 319 -1 O PHE B 318 N VAL B 247 SHEET 4 AA8 4 LEU B 356 PRO B 357 -1 O LEU B 356 N MET B 319 SHEET 1 AA9 2 VAL B 268 HIS B 271 0 SHEET 2 AA9 2 VAL B 298 CYS B 302 -1 O VAL B 298 N HIS B 271 SHEET 1 AB1 2 THR B 280 ALA B 281 0 SHEET 2 AB1 2 GLU B 284 CYS B 285 -1 O GLU B 284 N ALA B 281 SHEET 1 AB2 3 SER B 359 ILE B 360 0 SHEET 2 AB2 3 GLU B 378 MET B 381 -1 O ARG B 380 N ILE B 360 SHEET 3 AB2 3 PRO B 367 HIS B 369 -1 N ILE B 368 O GLN B 379 SHEET 1 AB3 3 GLU B 457 LYS B 458 0 SHEET 2 AB3 3 LEU B 453 LEU B 454 -1 N LEU B 454 O GLU B 457 SHEET 3 AB3 3 ASP B 496 PHE B 497 1 O PHE B 497 N LEU B 453 LINK OXT DGL A 701 P AMP A 702 1555 1555 1.55 LINK OXT DGL B 701 P AMP B 702 1555 1555 1.57 LINK SG CYS A 256 ZN ZN A 704 1555 1555 2.26 LINK SG CYS A 259 ZN ZN A 704 1555 1555 2.35 LINK SG CYS A 272 ZN ZN A 703 1555 1555 2.37 LINK SG CYS A 275 ZN ZN A 703 1555 1555 2.40 LINK SG CYS A 285 ZN ZN A 703 1555 1555 2.34 LINK SG CYS A 288 ZN ZN A 703 1555 1555 2.34 LINK SG CYS A 302 ZN ZN A 704 1555 1555 2.41 LINK SG CYS A 305 ZN ZN A 704 1555 1555 2.28 LINK SG CYS B 256 ZN ZN B 704 1555 1555 2.30 LINK SG CYS B 259 ZN ZN B 704 1555 1555 2.36 LINK SG CYS B 272 ZN ZN B 703 1555 1555 2.38 LINK SG CYS B 275 ZN ZN B 703 1555 1555 2.30 LINK SG CYS B 285 ZN ZN B 703 1555 1555 2.36 LINK SG CYS B 288 ZN ZN B 703 1555 1555 2.32 LINK SG CYS B 302 ZN ZN B 704 1555 1555 2.34 LINK SG CYS B 305 ZN ZN B 704 1555 1555 2.35 CRYST1 101.236 50.434 106.322 90.00 90.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009878 0.000000 0.000040 0.00000 SCALE2 0.000000 0.019828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009405 0.00000 CONECT 956 8161 CONECT 978 8161 CONECT 1073 8160 CONECT 1096 8160 CONECT 1162 8160 CONECT 1185 8160 CONECT 1294 8161 CONECT 1312 8161 CONECT 5006 8195 CONECT 5028 8195 CONECT 5127 8194 CONECT 5150 8194 CONECT 5216 8194 CONECT 5239 8194 CONECT 5348 8195 CONECT 5366 8195 CONECT 8128 8129 CONECT 8129 8128 8130 8132 CONECT 8130 8129 8131 8137 CONECT 8131 8130 CONECT 8132 8129 8133 CONECT 8133 8132 8134 CONECT 8134 8133 8135 8136 CONECT 8135 8134 CONECT 8136 8134 CONECT 8137 8130 8138 CONECT 8138 8137 8139 8140 8141 CONECT 8139 8138 CONECT 8140 8138 CONECT 8141 8138 8142 CONECT 8142 8141 8143 CONECT 8143 8142 8144 8145 CONECT 8144 8143 8149 CONECT 8145 8143 8146 8147 CONECT 8146 8145 CONECT 8147 8145 8148 8149 CONECT 8148 8147 CONECT 8149 8144 8147 8150 CONECT 8150 8149 8151 8159 CONECT 8151 8150 8152 CONECT 8152 8151 8153 CONECT 8153 8152 8154 8159 CONECT 8154 8153 8155 8156 CONECT 8155 8154 CONECT 8156 8154 8157 CONECT 8157 8156 8158 CONECT 8158 8157 8159 CONECT 8159 8150 8153 8158 CONECT 8160 1073 1096 1162 1185 CONECT 8161 956 978 1294 1312 CONECT 8162 8163 CONECT 8163 8162 8164 8166 CONECT 8164 8163 8165 8171 CONECT 8165 8164 CONECT 8166 8163 8167 CONECT 8167 8166 8168 CONECT 8168 8167 8169 8170 CONECT 8169 8168 CONECT 8170 8168 CONECT 8171 8164 8172 CONECT 8172 8171 8173 8174 8175 CONECT 8173 8172 CONECT 8174 8172 CONECT 8175 8172 8176 CONECT 8176 8175 8177 CONECT 8177 8176 8178 8179 CONECT 8178 8177 8183 CONECT 8179 8177 8180 8181 CONECT 8180 8179 CONECT 8181 8179 8182 8183 CONECT 8182 8181 CONECT 8183 8178 8181 8184 CONECT 8184 8183 8185 8193 CONECT 8185 8184 8186 CONECT 8186 8185 8187 CONECT 8187 8186 8188 8193 CONECT 8188 8187 8189 8190 CONECT 8189 8188 CONECT 8190 8188 8191 CONECT 8191 8190 8192 CONECT 8192 8191 8193 CONECT 8193 8184 8187 8192 CONECT 8194 5127 5150 5216 5239 CONECT 8195 5006 5028 5348 5366 MASTER 415 0 8 46 38 0 0 6 9063 2 84 88 END