HEADER TRANSFERASE 10-JUL-25 9VTD TITLE CRYSTAL STRUCTURE OF MAEF BOUND WITH DMASPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYNF/TRUF/PATF FAMILY PEPTIDE O-PRENYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROCYSTIS AERUGINOSA BLCC-F108; SOURCE 3 ORGANISM_TAXID: 2755317; SOURCE 4 STRAIN: BLCCF108; SOURCE 5 GENE: H0902_01565; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3)PLYSS KEYWDS PEPTIDE PRENYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ITO,K.HAMADA,S.INOUE,H.SUGA,Y.GOTO,T.SENGOKU REVDAT 1 24-JUN-26 9VTD 0 JRNL AUTH S.INOUE JRNL TITL RAPID SCREENING PLATFORM FOR PEPTIDE PRENYLTRANSFERASES TO JRNL TITL 2 DIVERSIFY PSEUDO-NATURAL PRENYLATED PEPTIDES JRNL REF NAT CATAL JRNL REFN ESSN 2520-1158 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 39476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7900 - 3.7800 1.00 2867 154 0.1820 0.2122 REMARK 3 2 3.7800 - 3.0000 1.00 2742 146 0.1801 0.2331 REMARK 3 3 3.0000 - 2.6200 1.00 2720 145 0.1807 0.2240 REMARK 3 4 2.6200 - 2.3800 1.00 2689 143 0.1754 0.2488 REMARK 3 5 2.3800 - 2.2100 1.00 2695 144 0.1709 0.2124 REMARK 3 6 2.2100 - 2.0800 1.00 2691 144 0.1841 0.2399 REMARK 3 7 2.0800 - 1.9800 1.00 2662 141 0.1754 0.2149 REMARK 3 8 1.9800 - 1.8900 1.00 2680 143 0.1815 0.2383 REMARK 3 9 1.8900 - 1.8200 1.00 2649 142 0.1930 0.2767 REMARK 3 10 1.8200 - 1.7600 1.00 2665 142 0.2402 0.2925 REMARK 3 11 1.7600 - 1.7000 1.00 2644 141 0.2688 0.3652 REMARK 3 12 1.7000 - 1.6500 1.00 2686 143 0.2618 0.3002 REMARK 3 13 1.6500 - 1.6100 1.00 2614 141 0.2653 0.2711 REMARK 3 14 1.6100 - 1.5700 0.93 2472 131 0.3617 0.4139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.228 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2472 REMARK 3 ANGLE : 1.453 3351 REMARK 3 CHIRALITY : 0.091 362 REMARK 3 PLANARITY : 0.013 434 REMARK 3 DIHEDRAL : 18.323 942 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2235 -4.9791 13.4728 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1853 REMARK 3 T33: 0.1784 T12: -0.0030 REMARK 3 T13: 0.0092 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 3.2135 L22: 2.6043 REMARK 3 L33: 3.5112 L12: 1.3324 REMARK 3 L13: -0.5137 L23: 0.7316 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: 0.2076 S13: -0.1445 REMARK 3 S21: 0.0597 S22: 0.1467 S23: -0.1098 REMARK 3 S31: 0.0830 S32: 0.2466 S33: -0.0256 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3629 9.1426 10.2026 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.2322 REMARK 3 T33: 0.2839 T12: 0.0358 REMARK 3 T13: 0.0566 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 3.5875 L22: 2.4340 REMARK 3 L33: 3.2630 L12: -0.6322 REMARK 3 L13: -0.4041 L23: -1.4478 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.0280 S13: 0.5112 REMARK 3 S21: 0.1405 S22: 0.2656 S23: 0.0221 REMARK 3 S31: -0.6199 S32: -0.2924 S33: -0.1681 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8955 8.3045 12.6633 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.3903 REMARK 3 T33: 0.3189 T12: 0.0516 REMARK 3 T13: 0.0021 T23: 0.0614 REMARK 3 L TENSOR REMARK 3 L11: 2.6022 L22: 0.8615 REMARK 3 L33: 2.2088 L12: 0.0617 REMARK 3 L13: -2.5571 L23: -0.7968 REMARK 3 S TENSOR REMARK 3 S11: 0.2080 S12: 0.4005 S13: 0.3882 REMARK 3 S21: 0.1031 S22: 0.0223 S23: 0.1338 REMARK 3 S31: -0.5237 S32: -0.3532 S33: -0.2120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2270 -2.6296 17.1265 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.3950 REMARK 3 T33: 0.3122 T12: 0.0015 REMARK 3 T13: -0.0315 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 2.7761 L22: 3.9127 REMARK 3 L33: 2.9462 L12: -0.4142 REMARK 3 L13: -1.3187 L23: 1.5879 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.4656 S13: 0.0700 REMARK 3 S21: -0.3223 S22: 0.0057 S23: 0.6918 REMARK 3 S31: -0.1603 S32: -0.7497 S33: -0.0209 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7267 -13.4450 13.2828 REMARK 3 T TENSOR REMARK 3 T11: 0.2237 T22: 0.3144 REMARK 3 T33: 0.2457 T12: -0.1226 REMARK 3 T13: 0.0395 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 2.9849 L22: 3.4190 REMARK 3 L33: 3.0919 L12: 0.9128 REMARK 3 L13: -0.4231 L23: 0.6697 REMARK 3 S TENSOR REMARK 3 S11: -0.2529 S12: 0.3550 S13: -0.4687 REMARK 3 S21: -0.0314 S22: 0.0595 S23: 0.1866 REMARK 3 S31: 0.4089 S32: -0.7143 S33: -0.1424 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9VTD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300061105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39686 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 37.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 119.0 REMARK 200 R MERGE (I) : 0.21210 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM THIOCYANATE, PEGMME2000, REMARK 280 MAGNESIUM CHLORIDE TRIS-HCL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.74500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.17000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.58500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.75500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.75500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.58500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.74500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.17000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.74500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.17000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.74500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 58.75500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 19.58500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.74500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 19.58500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 58.75500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.74500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.74500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 9 O HOH A 405 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN A 11 HD22 ASN A 11 7545 1.29 REMARK 500 OE1 GLN A 84 NH2 ARG A 193 11554 1.91 REMARK 500 O HOH A 442 O HOH A 443 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 49 CG GLU A 49 CD 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 266 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU A 288 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 56 -110.45 53.53 REMARK 500 REMARK 500 REMARK: NULL DBREF1 9VTD A 6 289 UNP A0A841ULY2_MICAE DBREF2 9VTD A A0A841ULY2 6 289 SEQRES 1 A 284 GLU SER SER LYS LYS ASN TYR TYR ILE SER THR HIS LYS SEQRES 2 A 284 GLN ALA PHE ASP VAL GLU ASN PHE TYR PRO LEU GLU ILE SEQRES 3 A 284 TRP GLU LYS PHE VAL GLU LYS ILE GLU LYS THR SER GLU SEQRES 4 A 284 LYS CYS PHE LEU GLU SER SER CYS LYS ILE ASP GLN GLY SEQRES 5 A 284 GLN PHE TYR ALA ALA ARG PHE GLY ILE GLY PHE ASP LEU SEQRES 6 A 284 GLN ASN LEU GLN GLN LEU ASN ALA VAL TYR ASN PHE CYS SEQRES 7 A 284 GLN GLU VAL GLU SER ARG VAL GLY VAL ARG VAL ASP TYR SEQRES 8 A 284 SER LEU ILE LYS GLN PHE LEU GLY ASP ASP PHE ASP PHE SEQRES 9 A 284 SER LYS MET THR GLU PHE LEU ILE GLY VAL ASP ALA ARG SEQRES 10 A 284 ARG GLU LEU ALA GLU SER LYS LEU LYS ILE ALA LEU THR SEQRES 11 A 284 ILE ASN ASP TYR PRO GLU LYS LEU LYS THR ALA ILE TYR SEQRES 12 A 284 LEU ASN GLY GLY LEU ASP GLU THR ILE GLU LYS LEU ILE SEQRES 13 A 284 VAL SER ASN SER LEU HIS LEU GLY PHE ASP LEU SER LEU SEQRES 14 A 284 ASN GLY ILE SER GLU ILE GLU LEU TYR PRO TYR ILE GLY SEQRES 15 A 284 LYS GLN ASP PHE GLN ARG ILE ASP ILE GLN GLN ARG LEU SEQRES 16 A 284 ALA THR VAL LEU SER PRO GLN ALA LEU ARG PRO LEU ALA SEQRES 17 A 284 ALA CYS ARG ARG ILE CYS VAL GLY LEU SER LYS GLY ASN SEQRES 18 A 284 THR GLU LYS ILE LEU TYR TYR TYR LEU GLU ASP ILE LYS SEQRES 19 A 284 ASP PHE LEU ASN TYR PHE THR PRO ASN ASP THR ALA ARG SEQRES 20 A 284 ARG VAL HIS ALA TYR TYR GLN LYS GLN PRO ILE SER GLU SEQRES 21 A 284 MET CYS VAL ALA ALA PRO GLU SER GLN PHE ILE ALA GLU SEQRES 22 A 284 LYS ILE GLU LYS MET ASN LEU TYR TYR LEU PHE HET DST A 301 23 HET PG0 A 302 20 HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE HETSYN PG0 PEG 6000 FORMUL 2 DST C5 H12 O6 P2 S FORMUL 3 PG0 C5 H12 O3 FORMUL 4 HOH *104(H2 O) HELIX 1 AA1 SER A 8 PHE A 21 1 14 HELIX 2 AA2 PRO A 28 SER A 43 1 16 HELIX 3 AA3 ASN A 72 SER A 88 1 17 HELIX 4 AA4 TYR A 96 GLY A 104 1 9 HELIX 5 AA5 ASP A 108 SER A 110 5 3 HELIX 6 AA6 GLU A 124 GLU A 127 5 4 HELIX 7 AA7 TYR A 139 ASN A 150 1 12 HELIX 8 AA8 ASP A 154 LYS A 159 1 6 HELIX 9 AA9 GLN A 189 PHE A 191 5 3 HELIX 10 AB1 ARG A 193 LEU A 204 1 12 HELIX 11 AB2 SER A 205 ARG A 210 1 6 HELIX 12 AB3 PRO A 211 ALA A 213 5 3 HELIX 13 AB4 ASP A 237 LYS A 239 5 3 HELIX 14 AB5 ASP A 240 PHE A 245 1 6 HELIX 15 AB6 ASN A 248 TYR A 257 1 10 HELIX 16 AB7 GLU A 272 ALA A 277 1 6 SHEET 1 AA111 SER A 178 TYR A 183 0 SHEET 2 AA111 LEU A 166 SER A 173 -1 N GLY A 169 O GLU A 181 SHEET 3 AA111 LYS A 129 ILE A 136 -1 N LEU A 134 O LEU A 168 SHEET 4 AA111 MET A 112 ASP A 120 -1 N GLY A 118 O LYS A 131 SHEET 5 AA111 GLN A 58 PHE A 68 -1 N PHE A 64 O VAL A 119 SHEET 6 AA111 PHE A 47 ASP A 55 -1 N ASP A 55 O GLN A 58 SHEET 7 AA111 LYS A 282 LEU A 288 -1 O MET A 283 N ILE A 54 SHEET 8 AA111 GLU A 265 PRO A 271 -1 N GLU A 265 O LEU A 288 SHEET 9 AA111 ILE A 230 LEU A 235 -1 N LEU A 235 O MET A 266 SHEET 10 AA111 CYS A 215 GLY A 221 -1 N GLY A 221 O ILE A 230 SHEET 11 AA111 TYR A 185 GLY A 187 -1 N ILE A 186 O ILE A 218 CISPEP 1 TYR A 27 PRO A 28 0 4.96 CRYST1 119.490 119.490 78.340 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012765 0.00000 CONECT 4784 4785 CONECT 4785 4784 4786 4787 4788 CONECT 4786 4785 CONECT 4787 4785 CONECT 4788 4785 4789 CONECT 4789 4788 4790 4791 4792 CONECT 4790 4789 CONECT 4791 4789 CONECT 4792 4789 4793 CONECT 4793 4792 4794 4798 4799 CONECT 4794 4793 4795 4800 CONECT 4795 4794 4796 4797 CONECT 4796 4795 4801 4802 4803 CONECT 4797 4795 4804 4805 4806 CONECT 4798 4793 CONECT 4799 4793 CONECT 4800 4794 CONECT 4801 4796 CONECT 4802 4796 CONECT 4803 4796 CONECT 4804 4797 CONECT 4805 4797 CONECT 4806 4797 CONECT 4807 4808 4815 4816 4817 CONECT 4808 4807 4809 CONECT 4809 4808 4810 4818 4819 CONECT 4810 4809 4811 4820 4821 CONECT 4811 4810 4812 CONECT 4812 4811 4813 4822 4823 CONECT 4813 4812 4814 4824 4825 CONECT 4814 4813 4826 CONECT 4815 4807 CONECT 4816 4807 CONECT 4817 4807 CONECT 4818 4809 CONECT 4819 4809 CONECT 4820 4810 CONECT 4821 4810 CONECT 4822 4812 CONECT 4823 4812 CONECT 4824 4813 CONECT 4825 4813 CONECT 4826 4814 MASTER 441 0 2 16 11 0 0 6 2434 1 43 22 END