data_9VVB # _entry.id 9VVB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9VVB pdb_00009vvb 10.2210/pdb9vvb/pdb WWPDB D_1300061590 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-07-22 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9VVB _pdbx_database_status.recvd_initial_deposition_date 2025-07-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 4 _pdbx_contact_author.email masaru@isu.ac.jp _pdbx_contact_author.name_first Masaru _pdbx_contact_author.name_last Tsunoda _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3128-7695 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Iizuka, Y.' 1 0000-0003-2456-1147 'Kikuchi, M.' 2 0000-0001-8809-7262 'Yamauchi, T.' 3 0000-0001-6013-6346 'Tsunoda, M.' 4 0000-0002-3128-7695 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;High temperature (353K) crystal structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix with substrate ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Iizuka, Y.' 1 0000-0003-2456-1147 primary 'Kikuchi, M.' 2 0000-0001-8809-7262 primary 'Yamauchi, T.' 3 0000-0001-6013-6346 primary 'Tsunoda, M.' 4 0000-0002-3128-7695 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;S-methyl-5'-thioadenosine phosphorylase ; 30498.967 1 2.4.2.28 ? ? 'The first M and second F are missing in the uploaded structure because the electron density could not be observed.' 2 non-polymer syn "5'-DEOXY-5'-METHYLTHIOADENOSINE" 297.334 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 water nat water 18.015 38 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;5'-methylthioadenosine phosphorylase,MTA phosphorylase,MTAP ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EITRPPGVRAHVGVIGGSGLYDPGIVENPVEVKVSTPYGNPSDFIVVGDVAGVKVAFLPRHGRGHRIPPHAINYRANIWA LKALGVKWVISVSAVGSLREDYRPGDFVVPDQFIDMTKNRRHYTFYDGPVTVHVSMADPFCEDLRQRLIDSGRRLGYTVH ERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAMVTDYDVWADRPVTAEEVERVMISNVE RARRMLYDVIPKLAGEPELERCSCCRALDTAAI ; _entity_poly.pdbx_seq_one_letter_code_can ;EITRPPGVRAHVGVIGGSGLYDPGIVENPVEVKVSTPYGNPSDFIVVGDVAGVKVAFLPRHGRGHRIPPHAINYRANIWA LKALGVKWVISVSAVGSLREDYRPGDFVVPDQFIDMTKNRRHYTFYDGPVTVHVSMADPFCEDLRQRLIDSGRRLGYTVH ERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAMVTDYDVWADRPVTAEEVERVMISNVE RARRMLYDVIPKLAGEPELERCSCCRALDTAAI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5'-DEOXY-5'-METHYLTHIOADENOSINE" MTA 3 'PHOSPHATE ION' PO4 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ILE n 1 3 THR n 1 4 ARG n 1 5 PRO n 1 6 PRO n 1 7 GLY n 1 8 VAL n 1 9 ARG n 1 10 ALA n 1 11 HIS n 1 12 VAL n 1 13 GLY n 1 14 VAL n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 SER n 1 19 GLY n 1 20 LEU n 1 21 TYR n 1 22 ASP n 1 23 PRO n 1 24 GLY n 1 25 ILE n 1 26 VAL n 1 27 GLU n 1 28 ASN n 1 29 PRO n 1 30 VAL n 1 31 GLU n 1 32 VAL n 1 33 LYS n 1 34 VAL n 1 35 SER n 1 36 THR n 1 37 PRO n 1 38 TYR n 1 39 GLY n 1 40 ASN n 1 41 PRO n 1 42 SER n 1 43 ASP n 1 44 PHE n 1 45 ILE n 1 46 VAL n 1 47 VAL n 1 48 GLY n 1 49 ASP n 1 50 VAL n 1 51 ALA n 1 52 GLY n 1 53 VAL n 1 54 LYS n 1 55 VAL n 1 56 ALA n 1 57 PHE n 1 58 LEU n 1 59 PRO n 1 60 ARG n 1 61 HIS n 1 62 GLY n 1 63 ARG n 1 64 GLY n 1 65 HIS n 1 66 ARG n 1 67 ILE n 1 68 PRO n 1 69 PRO n 1 70 HIS n 1 71 ALA n 1 72 ILE n 1 73 ASN n 1 74 TYR n 1 75 ARG n 1 76 ALA n 1 77 ASN n 1 78 ILE n 1 79 TRP n 1 80 ALA n 1 81 LEU n 1 82 LYS n 1 83 ALA n 1 84 LEU n 1 85 GLY n 1 86 VAL n 1 87 LYS n 1 88 TRP n 1 89 VAL n 1 90 ILE n 1 91 SER n 1 92 VAL n 1 93 SER n 1 94 ALA n 1 95 VAL n 1 96 GLY n 1 97 SER n 1 98 LEU n 1 99 ARG n 1 100 GLU n 1 101 ASP n 1 102 TYR n 1 103 ARG n 1 104 PRO n 1 105 GLY n 1 106 ASP n 1 107 PHE n 1 108 VAL n 1 109 VAL n 1 110 PRO n 1 111 ASP n 1 112 GLN n 1 113 PHE n 1 114 ILE n 1 115 ASP n 1 116 MET n 1 117 THR n 1 118 LYS n 1 119 ASN n 1 120 ARG n 1 121 ARG n 1 122 HIS n 1 123 TYR n 1 124 THR n 1 125 PHE n 1 126 TYR n 1 127 ASP n 1 128 GLY n 1 129 PRO n 1 130 VAL n 1 131 THR n 1 132 VAL n 1 133 HIS n 1 134 VAL n 1 135 SER n 1 136 MET n 1 137 ALA n 1 138 ASP n 1 139 PRO n 1 140 PHE n 1 141 CYS n 1 142 GLU n 1 143 ASP n 1 144 LEU n 1 145 ARG n 1 146 GLN n 1 147 ARG n 1 148 LEU n 1 149 ILE n 1 150 ASP n 1 151 SER n 1 152 GLY n 1 153 ARG n 1 154 ARG n 1 155 LEU n 1 156 GLY n 1 157 TYR n 1 158 THR n 1 159 VAL n 1 160 HIS n 1 161 GLU n 1 162 ARG n 1 163 GLY n 1 164 THR n 1 165 TYR n 1 166 VAL n 1 167 CYS n 1 168 ILE n 1 169 GLU n 1 170 GLY n 1 171 PRO n 1 172 ARG n 1 173 PHE n 1 174 SER n 1 175 THR n 1 176 ARG n 1 177 ALA n 1 178 GLU n 1 179 SER n 1 180 ARG n 1 181 VAL n 1 182 TRP n 1 183 LYS n 1 184 ASP n 1 185 VAL n 1 186 PHE n 1 187 LYS n 1 188 ALA n 1 189 ASP n 1 190 ILE n 1 191 ILE n 1 192 GLY n 1 193 MET n 1 194 THR n 1 195 LEU n 1 196 VAL n 1 197 PRO n 1 198 GLU n 1 199 ILE n 1 200 ASN n 1 201 LEU n 1 202 ALA n 1 203 CYS n 1 204 GLU n 1 205 ALA n 1 206 GLN n 1 207 LEU n 1 208 CYS n 1 209 TYR n 1 210 ALA n 1 211 THR n 1 212 LEU n 1 213 ALA n 1 214 MET n 1 215 VAL n 1 216 THR n 1 217 ASP n 1 218 TYR n 1 219 ASP n 1 220 VAL n 1 221 TRP n 1 222 ALA n 1 223 ASP n 1 224 ARG n 1 225 PRO n 1 226 VAL n 1 227 THR n 1 228 ALA n 1 229 GLU n 1 230 GLU n 1 231 VAL n 1 232 GLU n 1 233 ARG n 1 234 VAL n 1 235 MET n 1 236 ILE n 1 237 SER n 1 238 ASN n 1 239 VAL n 1 240 GLU n 1 241 ARG n 1 242 ALA n 1 243 ARG n 1 244 ARG n 1 245 MET n 1 246 LEU n 1 247 TYR n 1 248 ASP n 1 249 VAL n 1 250 ILE n 1 251 PRO n 1 252 LYS n 1 253 LEU n 1 254 ALA n 1 255 GLY n 1 256 GLU n 1 257 PRO n 1 258 GLU n 1 259 LEU n 1 260 GLU n 1 261 ARG n 1 262 CYS n 1 263 SER n 1 264 CYS n 1 265 CYS n 1 266 ARG n 1 267 ALA n 1 268 LEU n 1 269 ASP n 1 270 THR n 1 271 ALA n 1 272 ALA n 1 273 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 273 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mtnP, APE_1885' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Aeropyrum pernix K1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272557 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MTA non-polymer . "5'-DEOXY-5'-METHYLTHIOADENOSINE" ? 'C11 H15 N5 O3 S' 297.334 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 3 3 GLU GLU A . n A 1 2 ILE 2 4 4 ILE ILE A . n A 1 3 THR 3 5 5 THR THR A . n A 1 4 ARG 4 6 6 ARG ARG A . n A 1 5 PRO 5 7 7 PRO PRO A . n A 1 6 PRO 6 8 8 PRO PRO A . n A 1 7 GLY 7 9 9 GLY GLY A . n A 1 8 VAL 8 10 10 VAL VAL A . n A 1 9 ARG 9 11 11 ARG ARG A . n A 1 10 ALA 10 12 12 ALA ALA A . n A 1 11 HIS 11 13 13 HIS HIS A . n A 1 12 VAL 12 14 14 VAL VAL A . n A 1 13 GLY 13 15 15 GLY GLY A . n A 1 14 VAL 14 16 16 VAL VAL A . n A 1 15 ILE 15 17 17 ILE ILE A . n A 1 16 GLY 16 18 18 GLY GLY A . n A 1 17 GLY 17 19 19 GLY GLY A . n A 1 18 SER 18 20 20 SER SER A . n A 1 19 GLY 19 21 21 GLY GLY A . n A 1 20 LEU 20 22 22 LEU LEU A . n A 1 21 TYR 21 23 23 TYR TYR A . n A 1 22 ASP 22 24 24 ASP ASP A . n A 1 23 PRO 23 25 25 PRO PRO A . n A 1 24 GLY 24 26 26 GLY GLY A . n A 1 25 ILE 25 27 27 ILE ILE A . n A 1 26 VAL 26 28 28 VAL VAL A . n A 1 27 GLU 27 29 29 GLU GLU A . n A 1 28 ASN 28 30 30 ASN ASN A . n A 1 29 PRO 29 31 31 PRO PRO A . n A 1 30 VAL 30 32 32 VAL VAL A . n A 1 31 GLU 31 33 33 GLU GLU A . n A 1 32 VAL 32 34 34 VAL VAL A . n A 1 33 LYS 33 35 35 LYS LYS A . n A 1 34 VAL 34 36 36 VAL VAL A . n A 1 35 SER 35 37 37 SER SER A . n A 1 36 THR 36 38 38 THR THR A . n A 1 37 PRO 37 39 39 PRO PRO A . n A 1 38 TYR 38 40 40 TYR TYR A . n A 1 39 GLY 39 41 41 GLY GLY A . n A 1 40 ASN 40 42 42 ASN ASN A . n A 1 41 PRO 41 43 43 PRO PRO A . n A 1 42 SER 42 44 44 SER SER A . n A 1 43 ASP 43 45 45 ASP ASP A . n A 1 44 PHE 44 46 46 PHE PHE A . n A 1 45 ILE 45 47 47 ILE ILE A . n A 1 46 VAL 46 48 48 VAL VAL A . n A 1 47 VAL 47 49 49 VAL VAL A . n A 1 48 GLY 48 50 50 GLY GLY A . n A 1 49 ASP 49 51 51 ASP ASP A . n A 1 50 VAL 50 52 52 VAL VAL A . n A 1 51 ALA 51 53 53 ALA ALA A . n A 1 52 GLY 52 54 54 GLY GLY A . n A 1 53 VAL 53 55 55 VAL VAL A . n A 1 54 LYS 54 56 56 LYS LYS A . n A 1 55 VAL 55 57 57 VAL VAL A . n A 1 56 ALA 56 58 58 ALA ALA A . n A 1 57 PHE 57 59 59 PHE PHE A . n A 1 58 LEU 58 60 60 LEU LEU A . n A 1 59 PRO 59 61 61 PRO PRO A . n A 1 60 ARG 60 62 62 ARG ARG A . n A 1 61 HIS 61 63 63 HIS HIS A . n A 1 62 GLY 62 64 64 GLY GLY A . n A 1 63 ARG 63 65 65 ARG ARG A . n A 1 64 GLY 64 66 66 GLY GLY A . n A 1 65 HIS 65 67 67 HIS HIS A . n A 1 66 ARG 66 68 68 ARG ARG A . n A 1 67 ILE 67 69 69 ILE ILE A . n A 1 68 PRO 68 70 70 PRO PRO A . n A 1 69 PRO 69 71 71 PRO PRO A . n A 1 70 HIS 70 72 72 HIS HIS A . n A 1 71 ALA 71 73 73 ALA ALA A . n A 1 72 ILE 72 74 74 ILE ILE A . n A 1 73 ASN 73 75 75 ASN ASN A . n A 1 74 TYR 74 76 76 TYR TYR A . n A 1 75 ARG 75 77 77 ARG ARG A . n A 1 76 ALA 76 78 78 ALA ALA A . n A 1 77 ASN 77 79 79 ASN ASN A . n A 1 78 ILE 78 80 80 ILE ILE A . n A 1 79 TRP 79 81 81 TRP TRP A . n A 1 80 ALA 80 82 82 ALA ALA A . n A 1 81 LEU 81 83 83 LEU LEU A . n A 1 82 LYS 82 84 84 LYS LYS A . n A 1 83 ALA 83 85 85 ALA ALA A . n A 1 84 LEU 84 86 86 LEU LEU A . n A 1 85 GLY 85 87 87 GLY GLY A . n A 1 86 VAL 86 88 88 VAL VAL A . n A 1 87 LYS 87 89 89 LYS LYS A . n A 1 88 TRP 88 90 90 TRP TRP A . n A 1 89 VAL 89 91 91 VAL VAL A . n A 1 90 ILE 90 92 92 ILE ILE A . n A 1 91 SER 91 93 93 SER SER A . n A 1 92 VAL 92 94 94 VAL VAL A . n A 1 93 SER 93 95 95 SER SER A . n A 1 94 ALA 94 96 96 ALA ALA A . n A 1 95 VAL 95 97 97 VAL VAL A . n A 1 96 GLY 96 98 98 GLY GLY A . n A 1 97 SER 97 99 99 SER SER A . n A 1 98 LEU 98 100 100 LEU LEU A . n A 1 99 ARG 99 101 101 ARG ARG A . n A 1 100 GLU 100 102 102 GLU GLU A . n A 1 101 ASP 101 103 103 ASP ASP A . n A 1 102 TYR 102 104 104 TYR TYR A . n A 1 103 ARG 103 105 105 ARG ARG A . n A 1 104 PRO 104 106 106 PRO PRO A . n A 1 105 GLY 105 107 107 GLY GLY A . n A 1 106 ASP 106 108 108 ASP ASP A . n A 1 107 PHE 107 109 109 PHE PHE A . n A 1 108 VAL 108 110 110 VAL VAL A . n A 1 109 VAL 109 111 111 VAL VAL A . n A 1 110 PRO 110 112 112 PRO PRO A . n A 1 111 ASP 111 113 113 ASP ASP A . n A 1 112 GLN 112 114 114 GLN GLN A . n A 1 113 PHE 113 115 115 PHE PHE A . n A 1 114 ILE 114 116 116 ILE ILE A . n A 1 115 ASP 115 117 117 ASP ASP A . n A 1 116 MET 116 118 118 MET MET A . n A 1 117 THR 117 119 119 THR THR A . n A 1 118 LYS 118 120 120 LYS LYS A . n A 1 119 ASN 119 121 121 ASN ASN A . n A 1 120 ARG 120 122 122 ARG ARG A . n A 1 121 ARG 121 123 123 ARG ARG A . n A 1 122 HIS 122 124 124 HIS HIS A . n A 1 123 TYR 123 125 125 TYR TYR A . n A 1 124 THR 124 126 126 THR THR A . n A 1 125 PHE 125 127 127 PHE PHE A . n A 1 126 TYR 126 128 128 TYR TYR A . n A 1 127 ASP 127 129 129 ASP ASP A . n A 1 128 GLY 128 130 130 GLY GLY A . n A 1 129 PRO 129 131 131 PRO PRO A . n A 1 130 VAL 130 132 132 VAL VAL A . n A 1 131 THR 131 133 133 THR THR A . n A 1 132 VAL 132 134 134 VAL VAL A . n A 1 133 HIS 133 135 135 HIS HIS A . n A 1 134 VAL 134 136 136 VAL VAL A . n A 1 135 SER 135 137 137 SER SER A . n A 1 136 MET 136 138 138 MET MET A . n A 1 137 ALA 137 139 139 ALA ALA A . n A 1 138 ASP 138 140 140 ASP ASP A . n A 1 139 PRO 139 141 141 PRO PRO A . n A 1 140 PHE 140 142 142 PHE PHE A . n A 1 141 CYS 141 143 143 CYS CYS A . n A 1 142 GLU 142 144 144 GLU GLU A . n A 1 143 ASP 143 145 145 ASP ASP A . n A 1 144 LEU 144 146 146 LEU LEU A . n A 1 145 ARG 145 147 147 ARG ARG A . n A 1 146 GLN 146 148 148 GLN GLN A . n A 1 147 ARG 147 149 149 ARG ARG A . n A 1 148 LEU 148 150 150 LEU LEU A . n A 1 149 ILE 149 151 151 ILE ILE A . n A 1 150 ASP 150 152 152 ASP ASP A . n A 1 151 SER 151 153 153 SER SER A . n A 1 152 GLY 152 154 154 GLY GLY A . n A 1 153 ARG 153 155 155 ARG ARG A . n A 1 154 ARG 154 156 156 ARG ARG A . n A 1 155 LEU 155 157 157 LEU LEU A . n A 1 156 GLY 156 158 158 GLY GLY A . n A 1 157 TYR 157 159 159 TYR TYR A . n A 1 158 THR 158 160 160 THR THR A . n A 1 159 VAL 159 161 161 VAL VAL A . n A 1 160 HIS 160 162 162 HIS HIS A . n A 1 161 GLU 161 163 163 GLU GLU A . n A 1 162 ARG 162 164 164 ARG ARG A . n A 1 163 GLY 163 165 165 GLY GLY A . n A 1 164 THR 164 166 166 THR THR A . n A 1 165 TYR 165 167 167 TYR TYR A . n A 1 166 VAL 166 168 168 VAL VAL A . n A 1 167 CYS 167 169 169 CYS CYS A . n A 1 168 ILE 168 170 170 ILE ILE A . n A 1 169 GLU 169 171 171 GLU GLU A . n A 1 170 GLY 170 172 172 GLY GLY A . n A 1 171 PRO 171 173 173 PRO PRO A . n A 1 172 ARG 172 174 174 ARG ARG A . n A 1 173 PHE 173 175 175 PHE PHE A . n A 1 174 SER 174 176 176 SER SER A . n A 1 175 THR 175 177 177 THR THR A . n A 1 176 ARG 176 178 178 ARG ARG A . n A 1 177 ALA 177 179 179 ALA ALA A . n A 1 178 GLU 178 180 180 GLU GLU A . n A 1 179 SER 179 181 181 SER SER A . n A 1 180 ARG 180 182 182 ARG ARG A . n A 1 181 VAL 181 183 183 VAL VAL A . n A 1 182 TRP 182 184 184 TRP TRP A . n A 1 183 LYS 183 185 185 LYS LYS A . n A 1 184 ASP 184 186 186 ASP ASP A . n A 1 185 VAL 185 187 187 VAL VAL A . n A 1 186 PHE 186 188 188 PHE PHE A . n A 1 187 LYS 187 189 189 LYS LYS A . n A 1 188 ALA 188 190 190 ALA ALA A . n A 1 189 ASP 189 191 191 ASP ASP A . n A 1 190 ILE 190 192 192 ILE ILE A . n A 1 191 ILE 191 193 193 ILE ILE A . n A 1 192 GLY 192 194 194 GLY GLY A . n A 1 193 MET 193 195 195 MET MET A . n A 1 194 THR 194 196 196 THR THR A . n A 1 195 LEU 195 197 197 LEU LEU A . n A 1 196 VAL 196 198 198 VAL VAL A . n A 1 197 PRO 197 199 199 PRO PRO A . n A 1 198 GLU 198 200 200 GLU GLU A . n A 1 199 ILE 199 201 201 ILE ILE A . n A 1 200 ASN 200 202 202 ASN ASN A . n A 1 201 LEU 201 203 203 LEU LEU A . n A 1 202 ALA 202 204 204 ALA ALA A . n A 1 203 CYS 203 205 205 CYS CYS A . n A 1 204 GLU 204 206 206 GLU GLU A . n A 1 205 ALA 205 207 207 ALA ALA A . n A 1 206 GLN 206 208 208 GLN GLN A . n A 1 207 LEU 207 209 209 LEU LEU A . n A 1 208 CYS 208 210 210 CYS CYS A . n A 1 209 TYR 209 211 211 TYR TYR A . n A 1 210 ALA 210 212 212 ALA ALA A . n A 1 211 THR 211 213 213 THR THR A . n A 1 212 LEU 212 214 214 LEU LEU A . n A 1 213 ALA 213 215 215 ALA ALA A . n A 1 214 MET 214 216 216 MET MET A . n A 1 215 VAL 215 217 217 VAL VAL A . n A 1 216 THR 216 218 218 THR THR A . n A 1 217 ASP 217 219 219 ASP ASP A . n A 1 218 TYR 218 220 220 TYR TYR A . n A 1 219 ASP 219 221 221 ASP ASP A . n A 1 220 VAL 220 222 222 VAL VAL A . n A 1 221 TRP 221 223 223 TRP TRP A . n A 1 222 ALA 222 224 224 ALA ALA A . n A 1 223 ASP 223 225 225 ASP ASP A . n A 1 224 ARG 224 226 226 ARG ARG A . n A 1 225 PRO 225 227 227 PRO PRO A . n A 1 226 VAL 226 228 228 VAL VAL A . n A 1 227 THR 227 229 229 THR THR A . n A 1 228 ALA 228 230 230 ALA ALA A . n A 1 229 GLU 229 231 231 GLU GLU A . n A 1 230 GLU 230 232 232 GLU GLU A . n A 1 231 VAL 231 233 233 VAL VAL A . n A 1 232 GLU 232 234 234 GLU GLU A . n A 1 233 ARG 233 235 235 ARG ARG A . n A 1 234 VAL 234 236 236 VAL VAL A . n A 1 235 MET 235 237 237 MET MET A . n A 1 236 ILE 236 238 238 ILE ILE A . n A 1 237 SER 237 239 239 SER SER A . n A 1 238 ASN 238 240 240 ASN ASN A . n A 1 239 VAL 239 241 241 VAL VAL A . n A 1 240 GLU 240 242 242 GLU GLU A . n A 1 241 ARG 241 243 243 ARG ARG A . n A 1 242 ALA 242 244 244 ALA ALA A . n A 1 243 ARG 243 245 245 ARG ARG A . n A 1 244 ARG 244 246 246 ARG ARG A . n A 1 245 MET 245 247 247 MET MET A . n A 1 246 LEU 246 248 248 LEU LEU A . n A 1 247 TYR 247 249 249 TYR TYR A . n A 1 248 ASP 248 250 250 ASP ASP A . n A 1 249 VAL 249 251 251 VAL VAL A . n A 1 250 ILE 250 252 252 ILE ILE A . n A 1 251 PRO 251 253 253 PRO PRO A . n A 1 252 LYS 252 254 254 LYS LYS A . n A 1 253 LEU 253 255 255 LEU LEU A . n A 1 254 ALA 254 256 256 ALA ALA A . n A 1 255 GLY 255 257 257 GLY GLY A . n A 1 256 GLU 256 258 258 GLU GLU A . n A 1 257 PRO 257 259 259 PRO PRO A . n A 1 258 GLU 258 260 260 GLU GLU A . n A 1 259 LEU 259 261 261 LEU LEU A . n A 1 260 GLU 260 262 262 GLU GLU A . n A 1 261 ARG 261 263 263 ARG ARG A . n A 1 262 CYS 262 264 264 CYS CYS A . n A 1 263 SER 263 265 265 SER SER A . n A 1 264 CYS 264 266 266 CYS CYS A . n A 1 265 CYS 265 267 267 CYS CYS A . n A 1 266 ARG 266 268 268 ARG ARG A . n A 1 267 ALA 267 269 269 ALA ALA A . n A 1 268 LEU 268 270 270 LEU LEU A . n A 1 269 ASP 269 271 271 ASP ASP A . n A 1 270 THR 270 272 272 THR THR A . n A 1 271 ALA 271 273 273 ALA ALA A . n A 1 272 ALA 272 274 274 ALA ALA A . n A 1 273 ILE 273 275 275 ILE ILE A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 MTA ? ? MTA ? ? 'SUBJECT OF INVESTIGATION' ? 2 PO4 ? ? PO4 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTA 1 301 302 MTA MTA A . C 3 PO4 1 302 303 PO4 PO4 A . D 4 HOH 1 401 33 HOH HOH A . D 4 HOH 2 402 32 HOH HOH A . D 4 HOH 3 403 30 HOH HOH A . D 4 HOH 4 404 22 HOH HOH A . D 4 HOH 5 405 3 HOH HOH A . D 4 HOH 6 406 23 HOH HOH A . D 4 HOH 7 407 4 HOH HOH A . D 4 HOH 8 408 28 HOH HOH A . D 4 HOH 9 409 31 HOH HOH A . D 4 HOH 10 410 14 HOH HOH A . D 4 HOH 11 411 29 HOH HOH A . D 4 HOH 12 412 12 HOH HOH A . D 4 HOH 13 413 27 HOH HOH A . D 4 HOH 14 414 5 HOH HOH A . D 4 HOH 15 415 18 HOH HOH A . D 4 HOH 16 416 6 HOH HOH A . D 4 HOH 17 417 10 HOH HOH A . D 4 HOH 18 418 16 HOH HOH A . D 4 HOH 19 419 38 HOH HOH A . D 4 HOH 20 420 19 HOH HOH A . D 4 HOH 21 421 37 HOH HOH A . D 4 HOH 22 422 13 HOH HOH A . D 4 HOH 23 423 17 HOH HOH A . D 4 HOH 24 424 2 HOH HOH A . D 4 HOH 25 425 8 HOH HOH A . D 4 HOH 26 426 20 HOH HOH A . D 4 HOH 27 427 15 HOH HOH A . D 4 HOH 28 428 25 HOH HOH A . D 4 HOH 29 429 9 HOH HOH A . D 4 HOH 30 430 24 HOH HOH A . D 4 HOH 31 431 1 HOH HOH A . D 4 HOH 32 432 7 HOH HOH A . D 4 HOH 33 433 11 HOH HOH A . D 4 HOH 34 434 35 HOH HOH A . D 4 HOH 35 435 36 HOH HOH A . D 4 HOH 36 436 21 HOH HOH A . D 4 HOH 37 437 34 HOH HOH A . D 4 HOH 38 438 26 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? '5.8.0430 (refmacat 0.4.105)' ? 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? '5.8.0430 (refmacat 0.4.105)' ? 2 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . ? 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . ? 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 6 # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 120 _cell.angle_gamma_esd ? _cell.entry_id 9VVB _cell.details ? _cell.formula_units_Z ? _cell.length_a 79.076 _cell.length_a_esd ? _cell.length_b 79.076 _cell.length_b_esd ? _cell.length_c 233.748 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9VVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9VVB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.28788519 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.2719612 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method COUNTER-DIFFUSION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;The mixture of protein solution and agarose, methylcellulose was filled into a glass capillary, and the capillary was immersed in the reservoir solution for crystallization. The composition of the reservoir solution was as follows. 15%(v/v) PEG 200, 0.1M phosphate citrate pH5.4, 5 mM MTA ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.2 # _diffrn.ambient_environment ? _diffrn.ambient_temp 353 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-06-26 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9VVB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.83 _reflns.d_resolution_low 44.45 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25314 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.85 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.161 _reflns.pdbx_Rpim_I_all 0.069 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.145 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 8.97 44.45 ? 21.2 ? ? ? ? 251 ? ? ? ? ? ? ? ? ? ? ? 7.8 0.66 ? ? 0.076 0.034 ? 1 ? 0.995 ? ? 98.4 ? 0.068 ? ? ? ? ? ? ? ? ? 1.83 1.87 ? 2.9 ? ? ? ? 1551 ? ? ? ? ? ? ? ? ? ? ? 9.8 0.96 ? ? 1.190 0.525 ? 2 ? 0.705 ? ? 100.0 ? 1.066 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] 0.155 _refine.aniso_B[1][2] 0.077 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.155 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.503 _refine.B_iso_max ? _refine.B_iso_mean 28.902 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.976 _refine.correlation_coeff_Fo_to_Fc_free 0.966 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9VVB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.830 _refine.ls_d_res_low 44.45 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25313 _refine.ls_number_reflns_R_free 1262 _refine.ls_number_reflns_R_work 24051 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.968 _refine.ls_percent_reflns_R_free 4.986 _refine.ls_R_factor_all 0.142 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1678 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1402 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.172 _refine.ls_wR_factor_R_work 0.143 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1WTA _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.100 _refine.pdbx_overall_ESU_R_Free 0.095 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.301 _refine.overall_SU_ML 0.068 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work 0.9838 _refine.pdbx_average_fsc_free 0.9773 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.830 _refine_hist.d_res_low 44.45 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 2205 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2142 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 0.012 2231 ? r_bond_refined_d ? ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 2106 ? r_bond_other_d ? ? ? 'X-RAY DIFFRACTION' ? 1.805 1.821 3042 ? r_angle_refined_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.606 1.760 4830 ? r_angle_other_deg ? ? ? 'X-RAY DIFFRACTION' ? 7.274 5.000 274 ? r_dihedral_angle_1_deg ? ? ? 'X-RAY DIFFRACTION' ? 8.093 5.000 26 ? r_dihedral_angle_2_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.022 5.000 1 ? r_dihedral_angle_other_2_deg ? ? ? 'X-RAY DIFFRACTION' ? 14.078 10.000 354 ? r_dihedral_angle_3_deg ? ? ? 'X-RAY DIFFRACTION' ? 14.985 10.000 101 ? r_dihedral_angle_6_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.089 0.200 337 ? r_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.010 0.020 2682 ? r_gen_planes_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 531 ? r_gen_planes_other ? ? ? 'X-RAY DIFFRACTION' ? 0.215 0.200 327 ? r_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.196 0.200 1802 ? r_symmetry_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.180 0.200 1095 ? r_nbtor_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.085 0.200 1177 ? r_symmetry_nbtor_other ? ? ? 'X-RAY DIFFRACTION' ? 0.141 0.200 43 ? r_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.117 0.200 10 ? r_symmetry_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.185 0.200 78 ? r_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.137 0.200 8 ? r_symmetry_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 2.764 2.371 1093 ? r_mcbond_it ? ? ? 'X-RAY DIFFRACTION' ? 2.764 2.371 1093 ? r_mcbond_other ? ? ? 'X-RAY DIFFRACTION' ? 3.981 4.243 1365 ? r_mcangle_it ? ? ? 'X-RAY DIFFRACTION' ? 3.979 4.243 1366 ? r_mcangle_other ? ? ? 'X-RAY DIFFRACTION' ? 5.049 3.167 1138 ? r_scbond_it ? ? ? 'X-RAY DIFFRACTION' ? 5.052 3.171 1134 ? r_scbond_other ? ? ? 'X-RAY DIFFRACTION' ? 8.075 5.447 1676 ? r_scangle_it ? ? ? 'X-RAY DIFFRACTION' ? 8.081 5.450 1671 ? r_scangle_other ? ? ? 'X-RAY DIFFRACTION' ? 9.964 23.991 2301 ? r_lrange_it ? ? ? 'X-RAY DIFFRACTION' ? 9.967 23.962 2297 ? r_lrange_other ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.830 1.878 1864 . 90 1774 100.0000 . 0.232 . . 0.231 . . . . . 0.215 . . . . . 20 . 0.962 0.954 0.246 'X-RAY DIFFRACTION' 1.878 1.929 1784 . 95 1689 100.0000 . 0.205 . . 0.203 . . . . . 0.184 . . . . . 20 . 0.972 0.967 0.224 'X-RAY DIFFRACTION' 1.929 1.985 1743 . 72 1671 100.0000 . 0.187 . . 0.185 . . . . . 0.168 . . . . . 20 . 0.976 0.960 0.238 'X-RAY DIFFRACTION' 1.985 2.046 1699 . 101 1598 100.0000 . 0.177 . . 0.175 . . . . . 0.156 . . . . . 20 . 0.980 0.970 0.217 'X-RAY DIFFRACTION' 2.046 2.113 1645 . 94 1551 100.0000 . 0.167 . . 0.165 . . . . . 0.150 . . . . . 20 . 0.982 0.975 0.195 'X-RAY DIFFRACTION' 2.113 2.187 1594 . 97 1497 100.0000 . 0.154 . . 0.153 . . . . . 0.139 . . . . . 20 . 0.985 0.980 0.179 'X-RAY DIFFRACTION' 2.187 2.269 1551 . 70 1481 100.0000 . 0.149 . . 0.147 . . . . . 0.133 . . . . . 20 . 0.987 0.979 0.189 'X-RAY DIFFRACTION' 2.269 2.361 1488 . 74 1414 100.0000 . 0.142 . . 0.141 . . . . . 0.130 . . . . . 20 . 0.989 0.985 0.163 'X-RAY DIFFRACTION' 2.361 2.466 1429 . 74 1355 100.0000 . 0.147 . . 0.145 . . . . . 0.135 . . . . . 20 . 0.987 0.983 0.174 'X-RAY DIFFRACTION' 2.466 2.586 1353 . 67 1286 100.0000 . 0.142 . . 0.139 . . . . . 0.130 . . . . . 20 . 0.988 0.981 0.185 'X-RAY DIFFRACTION' 2.586 2.725 1317 . 65 1252 100.0000 . 0.134 . . 0.134 . . . . . 0.129 . . . . . 20 . 0.990 0.989 0.142 'X-RAY DIFFRACTION' 2.725 2.890 1229 . 56 1173 100.0000 . 0.140 . . 0.139 . . . . . 0.135 . . . . . 20 . 0.989 0.988 0.150 'X-RAY DIFFRACTION' 2.890 3.089 1166 . 48 1118 100.0000 . 0.134 . . 0.133 . . . . . 0.134 . . . . . 20 . 0.989 0.983 0.157 'X-RAY DIFFRACTION' 3.089 3.335 1099 . 51 1048 100.0000 . 0.138 . . 0.135 . . . . . 0.142 . . . . . 20 . 0.988 0.975 0.208 'X-RAY DIFFRACTION' 3.335 3.651 1006 . 50 956 100.0000 . 0.130 . . 0.128 . . . . . 0.137 . . . . . 20 . 0.990 0.979 0.176 'X-RAY DIFFRACTION' 3.651 4.078 914 . 60 854 100.0000 . 0.108 . . 0.107 . . . . . 0.126 . . . . . 20 . 0.993 0.991 0.122 'X-RAY DIFFRACTION' 4.078 4.703 821 . 37 784 100.0000 . 0.102 . . 0.101 . . . . . 0.124 . . . . . 20 . 0.994 0.992 0.109 'X-RAY DIFFRACTION' 4.703 5.744 711 . 25 686 100.0000 . 0.116 . . 0.116 . . . . . 0.144 . . . . . 20 . 0.993 0.988 0.132 'X-RAY DIFFRACTION' 5.744 8.056 559 . 21 538 100.0000 . 0.138 . . 0.137 . . . . . 0.171 . . . . . 20 . 0.990 0.978 0.190 'X-RAY DIFFRACTION' 8.056 44.45 346 . 15 326 98.5549 . 0.152 . . 0.152 . . . . . 0.221 . . . . . 20 . 0.985 0.998 0.153 # _struct.entry_id 9VVB _struct.title ;High temperature (353K) crystal structure of 5'-Deoxy-5'-methylthioadenosine phosphorylase from Aeropyrum pernix with substrate ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9VVB _struct_keywords.text 'MTAP, complex, phosphorylase, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MTAP_AERPE _struct_ref.pdbx_db_accession Q9YAQ8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EITRPPGVRAHVGVIGGSGLYDPGIVENPVEVKVSTPYGNPSDFIVVGDVAGVKVAFLPRHGRGHRIPPHAINYRANIWA LKALGVKWVISVSAVGSLREDYRPGDFVVPDQFIDMTKNRRHYTFYDGPVTVHVSMADPFCEDLRQRLIDSGRRLGYTVH ERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAMVTDYDVWADRPVTAEEVERVMISNVE RARRMLYDVIPKLAGEPELERCSCCRALDTAAI ; _struct_ref.pdbx_align_begin 3 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9VVB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 273 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9YAQ8 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 275 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 275 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10530 ? 1 MORE -71 ? 1 'SSA (A^2)' 27530 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Elution was observed at the molecular weight of the trimer.' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 -39.5380000000 0.8660254038 -0.5000000000 0.0000000000 -68.4818248297 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5000000000 0.8660254038 0.0000000000 39.5380000000 -0.8660254038 -0.5000000000 0.0000000000 -68.4818248297 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 68 ? ILE A 72 ? PRO A 70 ILE A 74 5 ? 5 HELX_P HELX_P2 AA2 ASN A 73 ? LEU A 84 ? ASN A 75 LEU A 86 1 ? 12 HELX_P HELX_P3 AA3 CYS A 141 ? LEU A 155 ? CYS A 143 LEU A 157 1 ? 15 HELX_P HELX_P4 AA4 THR A 175 ? VAL A 185 ? THR A 177 VAL A 187 1 ? 11 HELX_P HELX_P5 AA5 PRO A 197 ? ALA A 205 ? PRO A 199 ALA A 207 1 ? 9 HELX_P HELX_P6 AA6 THR A 227 ? ASN A 238 ? THR A 229 ASN A 240 1 ? 12 HELX_P HELX_P7 AA7 ASN A 238 ? ILE A 250 ? ASN A 240 ILE A 252 1 ? 13 HELX_P HELX_P8 AA8 PRO A 251 ? ALA A 254 ? PRO A 253 ALA A 256 5 ? 4 HELX_P HELX_P9 AA9 GLU A 258 ? CYS A 262 ? GLU A 260 CYS A 264 5 ? 5 HELX_P HELX_P10 AB1 ALA A 267 ? ALA A 272 ? ALA A 269 ALA A 274 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 141 SG ? ? ? 1_555 A CYS 208 SG ? ? A CYS 143 A CYS 210 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 203 SG ? ? ? 1_555 A CYS 264 SG ? ? A CYS 205 A CYS 266 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf3 disulf ? ? A CYS 262 SG ? ? ? 1_555 A CYS 265 SG ? ? A CYS 264 A CYS 267 1_555 ? ? ? ? ? ? ? 1.990 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 141 ? CYS A 208 ? CYS A 143 ? 1_555 CYS A 210 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 203 ? CYS A 264 ? CYS A 205 ? 1_555 CYS A 266 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 262 ? CYS A 265 ? CYS A 264 ? 1_555 CYS A 267 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 4 A . ? ARG 6 A PRO 5 A ? PRO 7 A 1 -4.48 2 GLY 128 A . ? GLY 130 A PRO 129 A ? PRO 131 A 1 10.51 3 GLY 170 A . ? GLY 172 A PRO 171 A ? PRO 173 A 1 3.49 4 VAL 196 A . ? VAL 198 A PRO 197 A ? PRO 199 A 1 8.55 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 9 ? AA2 ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA1 7 8 ? parallel AA1 8 9 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? parallel AA2 7 8 ? anti-parallel AA2 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 3 ? ARG A 4 ? THR A 5 ARG A 6 AA1 2 GLU A 27 ? VAL A 34 ? GLU A 29 VAL A 36 AA1 3 ILE A 45 ? VAL A 50 ? ILE A 47 VAL A 52 AA1 4 VAL A 53 ? PRO A 59 ? VAL A 55 PRO A 61 AA1 5 VAL A 12 ? GLY A 16 ? VAL A 14 GLY A 18 AA1 6 TRP A 88 ? SER A 97 ? TRP A 90 SER A 99 AA1 7 ILE A 190 ? GLY A 192 ? ILE A 192 GLY A 194 AA1 8 THR A 164 ? ILE A 168 ? THR A 166 ILE A 170 AA1 9 GLN A 112 ? MET A 116 ? GLN A 114 MET A 118 AA2 1 THR A 3 ? ARG A 4 ? THR A 5 ARG A 6 AA2 2 GLU A 27 ? VAL A 34 ? GLU A 29 VAL A 36 AA2 3 ILE A 45 ? VAL A 50 ? ILE A 47 VAL A 52 AA2 4 VAL A 53 ? PRO A 59 ? VAL A 55 PRO A 61 AA2 5 VAL A 12 ? GLY A 16 ? VAL A 14 GLY A 18 AA2 6 TRP A 88 ? SER A 97 ? TRP A 90 SER A 99 AA2 7 CYS A 208 ? ASP A 217 ? CYS A 210 ASP A 219 AA2 8 PHE A 107 ? VAL A 108 ? PHE A 109 VAL A 110 AA2 9 VAL A 159 ? HIS A 160 ? VAL A 161 HIS A 162 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 4 ? N ARG A 6 O LYS A 33 ? O LYS A 35 AA1 2 3 N VAL A 32 ? N VAL A 34 O ILE A 45 ? O ILE A 47 AA1 3 4 N GLY A 48 ? N GLY A 50 O VAL A 55 ? O VAL A 57 AA1 4 5 O ALA A 56 ? O ALA A 58 N VAL A 12 ? N VAL A 14 AA1 5 6 N GLY A 13 ? N GLY A 15 O TRP A 88 ? O TRP A 90 AA1 6 7 N GLY A 96 ? N GLY A 98 O ILE A 191 ? O ILE A 193 AA1 7 8 O ILE A 190 ? O ILE A 192 N VAL A 166 ? N VAL A 168 AA1 8 9 O TYR A 165 ? O TYR A 167 N GLN A 112 ? N GLN A 114 AA2 1 2 N ARG A 4 ? N ARG A 6 O LYS A 33 ? O LYS A 35 AA2 2 3 N VAL A 32 ? N VAL A 34 O ILE A 45 ? O ILE A 47 AA2 3 4 N GLY A 48 ? N GLY A 50 O VAL A 55 ? O VAL A 57 AA2 4 5 O ALA A 56 ? O ALA A 58 N VAL A 12 ? N VAL A 14 AA2 5 6 N GLY A 13 ? N GLY A 15 O TRP A 88 ? O TRP A 90 AA2 6 7 N SER A 91 ? N SER A 93 O LEU A 212 ? O LEU A 214 AA2 7 8 O ALA A 213 ? O ALA A 215 N VAL A 108 ? N VAL A 110 AA2 8 9 N PHE A 107 ? N PHE A 109 O HIS A 160 ? O HIS A 162 # _pdbx_entry_details.entry_id 9VVB _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 120 ? ? -146.74 -18.59 2 1 ARG A 123 ? ? 78.37 -44.16 3 1 GLN A 208 ? ? 70.90 38.71 4 1 ASP A 221 ? ? 59.71 -130.94 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 178 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.092 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MTA CS C N N 250 MTA "S5'" S N N 251 MTA "C5'" C N N 252 MTA "C4'" C N S 253 MTA "O4'" O N N 254 MTA "C2'" C N R 255 MTA "O2'" O N N 256 MTA "C3'" C N S 257 MTA "O3'" O N N 258 MTA "C1'" C N R 259 MTA N9 N Y N 260 MTA C8 C Y N 261 MTA N7 N Y N 262 MTA C5 C Y N 263 MTA C6 C Y N 264 MTA N6 N N N 265 MTA N1 N Y N 266 MTA C2 C Y N 267 MTA N3 N Y N 268 MTA C4 C Y N 269 MTA HCS1 H N N 270 MTA HCS2 H N N 271 MTA HCS3 H N N 272 MTA "H5'1" H N N 273 MTA "H5'2" H N N 274 MTA "H4'" H N N 275 MTA "H2'" H N N 276 MTA "HO2'" H N N 277 MTA "H3'" H N N 278 MTA H3T H N N 279 MTA "H1'" H N N 280 MTA H8 H N N 281 MTA H61 H N N 282 MTA H62 H N N 283 MTA H2 H N N 284 PHE N N N N 285 PHE CA C N S 286 PHE C C N N 287 PHE O O N N 288 PHE CB C N N 289 PHE CG C Y N 290 PHE CD1 C Y N 291 PHE CD2 C Y N 292 PHE CE1 C Y N 293 PHE CE2 C Y N 294 PHE CZ C Y N 295 PHE OXT O N N 296 PHE H H N N 297 PHE H2 H N N 298 PHE HA H N N 299 PHE HB2 H N N 300 PHE HB3 H N N 301 PHE HD1 H N N 302 PHE HD2 H N N 303 PHE HE1 H N N 304 PHE HE2 H N N 305 PHE HZ H N N 306 PHE HXT H N N 307 PO4 P P N N 308 PO4 O1 O N N 309 PO4 O2 O N N 310 PO4 O3 O N N 311 PO4 O4 O N N 312 PRO N N N N 313 PRO CA C N S 314 PRO C C N N 315 PRO O O N N 316 PRO CB C N N 317 PRO CG C N N 318 PRO CD C N N 319 PRO OXT O N N 320 PRO H H N N 321 PRO HA H N N 322 PRO HB2 H N N 323 PRO HB3 H N N 324 PRO HG2 H N N 325 PRO HG3 H N N 326 PRO HD2 H N N 327 PRO HD3 H N N 328 PRO HXT H N N 329 SER N N N N 330 SER CA C N S 331 SER C C N N 332 SER O O N N 333 SER CB C N N 334 SER OG O N N 335 SER OXT O N N 336 SER H H N N 337 SER H2 H N N 338 SER HA H N N 339 SER HB2 H N N 340 SER HB3 H N N 341 SER HG H N N 342 SER HXT H N N 343 THR N N N N 344 THR CA C N S 345 THR C C N N 346 THR O O N N 347 THR CB C N R 348 THR OG1 O N N 349 THR CG2 C N N 350 THR OXT O N N 351 THR H H N N 352 THR H2 H N N 353 THR HA H N N 354 THR HB H N N 355 THR HG1 H N N 356 THR HG21 H N N 357 THR HG22 H N N 358 THR HG23 H N N 359 THR HXT H N N 360 TRP N N N N 361 TRP CA C N S 362 TRP C C N N 363 TRP O O N N 364 TRP CB C N N 365 TRP CG C Y N 366 TRP CD1 C Y N 367 TRP CD2 C Y N 368 TRP NE1 N Y N 369 TRP CE2 C Y N 370 TRP CE3 C Y N 371 TRP CZ2 C Y N 372 TRP CZ3 C Y N 373 TRP CH2 C Y N 374 TRP OXT O N N 375 TRP H H N N 376 TRP H2 H N N 377 TRP HA H N N 378 TRP HB2 H N N 379 TRP HB3 H N N 380 TRP HD1 H N N 381 TRP HE1 H N N 382 TRP HE3 H N N 383 TRP HZ2 H N N 384 TRP HZ3 H N N 385 TRP HH2 H N N 386 TRP HXT H N N 387 TYR N N N N 388 TYR CA C N S 389 TYR C C N N 390 TYR O O N N 391 TYR CB C N N 392 TYR CG C Y N 393 TYR CD1 C Y N 394 TYR CD2 C Y N 395 TYR CE1 C Y N 396 TYR CE2 C Y N 397 TYR CZ C Y N 398 TYR OH O N N 399 TYR OXT O N N 400 TYR H H N N 401 TYR H2 H N N 402 TYR HA H N N 403 TYR HB2 H N N 404 TYR HB3 H N N 405 TYR HD1 H N N 406 TYR HD2 H N N 407 TYR HE1 H N N 408 TYR HE2 H N N 409 TYR HH H N N 410 TYR HXT H N N 411 VAL N N N N 412 VAL CA C N S 413 VAL C C N N 414 VAL O O N N 415 VAL CB C N N 416 VAL CG1 C N N 417 VAL CG2 C N N 418 VAL OXT O N N 419 VAL H H N N 420 VAL H2 H N N 421 VAL HA H N N 422 VAL HB H N N 423 VAL HG11 H N N 424 VAL HG12 H N N 425 VAL HG13 H N N 426 VAL HG21 H N N 427 VAL HG22 H N N 428 VAL HG23 H N N 429 VAL HXT H N N 430 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MTA CS "S5'" sing N N 237 MTA CS HCS1 sing N N 238 MTA CS HCS2 sing N N 239 MTA CS HCS3 sing N N 240 MTA "S5'" "C5'" sing N N 241 MTA "C5'" "C4'" sing N N 242 MTA "C5'" "H5'1" sing N N 243 MTA "C5'" "H5'2" sing N N 244 MTA "C4'" "O4'" sing N N 245 MTA "C4'" "C3'" sing N N 246 MTA "C4'" "H4'" sing N N 247 MTA "O4'" "C1'" sing N N 248 MTA "C2'" "O2'" sing N N 249 MTA "C2'" "C3'" sing N N 250 MTA "C2'" "C1'" sing N N 251 MTA "C2'" "H2'" sing N N 252 MTA "O2'" "HO2'" sing N N 253 MTA "C3'" "O3'" sing N N 254 MTA "C3'" "H3'" sing N N 255 MTA "O3'" H3T sing N N 256 MTA "C1'" N9 sing N N 257 MTA "C1'" "H1'" sing N N 258 MTA N9 C8 sing Y N 259 MTA N9 C4 sing Y N 260 MTA C8 N7 doub Y N 261 MTA C8 H8 sing N N 262 MTA N7 C5 sing Y N 263 MTA C5 C6 sing Y N 264 MTA C5 C4 doub Y N 265 MTA C6 N6 sing N N 266 MTA C6 N1 doub Y N 267 MTA N6 H61 sing N N 268 MTA N6 H62 sing N N 269 MTA N1 C2 sing Y N 270 MTA C2 N3 doub Y N 271 MTA C2 H2 sing N N 272 MTA N3 C4 sing Y N 273 PHE N CA sing N N 274 PHE N H sing N N 275 PHE N H2 sing N N 276 PHE CA C sing N N 277 PHE CA CB sing N N 278 PHE CA HA sing N N 279 PHE C O doub N N 280 PHE C OXT sing N N 281 PHE CB CG sing N N 282 PHE CB HB2 sing N N 283 PHE CB HB3 sing N N 284 PHE CG CD1 doub Y N 285 PHE CG CD2 sing Y N 286 PHE CD1 CE1 sing Y N 287 PHE CD1 HD1 sing N N 288 PHE CD2 CE2 doub Y N 289 PHE CD2 HD2 sing N N 290 PHE CE1 CZ doub Y N 291 PHE CE1 HE1 sing N N 292 PHE CE2 CZ sing Y N 293 PHE CE2 HE2 sing N N 294 PHE CZ HZ sing N N 295 PHE OXT HXT sing N N 296 PO4 P O1 doub N N 297 PO4 P O2 sing N N 298 PO4 P O3 sing N N 299 PO4 P O4 sing N N 300 PRO N CA sing N N 301 PRO N CD sing N N 302 PRO N H sing N N 303 PRO CA C sing N N 304 PRO CA CB sing N N 305 PRO CA HA sing N N 306 PRO C O doub N N 307 PRO C OXT sing N N 308 PRO CB CG sing N N 309 PRO CB HB2 sing N N 310 PRO CB HB3 sing N N 311 PRO CG CD sing N N 312 PRO CG HG2 sing N N 313 PRO CG HG3 sing N N 314 PRO CD HD2 sing N N 315 PRO CD HD3 sing N N 316 PRO OXT HXT sing N N 317 SER N CA sing N N 318 SER N H sing N N 319 SER N H2 sing N N 320 SER CA C sing N N 321 SER CA CB sing N N 322 SER CA HA sing N N 323 SER C O doub N N 324 SER C OXT sing N N 325 SER CB OG sing N N 326 SER CB HB2 sing N N 327 SER CB HB3 sing N N 328 SER OG HG sing N N 329 SER OXT HXT sing N N 330 THR N CA sing N N 331 THR N H sing N N 332 THR N H2 sing N N 333 THR CA C sing N N 334 THR CA CB sing N N 335 THR CA HA sing N N 336 THR C O doub N N 337 THR C OXT sing N N 338 THR CB OG1 sing N N 339 THR CB CG2 sing N N 340 THR CB HB sing N N 341 THR OG1 HG1 sing N N 342 THR CG2 HG21 sing N N 343 THR CG2 HG22 sing N N 344 THR CG2 HG23 sing N N 345 THR OXT HXT sing N N 346 TRP N CA sing N N 347 TRP N H sing N N 348 TRP N H2 sing N N 349 TRP CA C sing N N 350 TRP CA CB sing N N 351 TRP CA HA sing N N 352 TRP C O doub N N 353 TRP C OXT sing N N 354 TRP CB CG sing N N 355 TRP CB HB2 sing N N 356 TRP CB HB3 sing N N 357 TRP CG CD1 doub Y N 358 TRP CG CD2 sing Y N 359 TRP CD1 NE1 sing Y N 360 TRP CD1 HD1 sing N N 361 TRP CD2 CE2 doub Y N 362 TRP CD2 CE3 sing Y N 363 TRP NE1 CE2 sing Y N 364 TRP NE1 HE1 sing N N 365 TRP CE2 CZ2 sing Y N 366 TRP CE3 CZ3 doub Y N 367 TRP CE3 HE3 sing N N 368 TRP CZ2 CH2 doub Y N 369 TRP CZ2 HZ2 sing N N 370 TRP CZ3 CH2 sing Y N 371 TRP CZ3 HZ3 sing N N 372 TRP CH2 HH2 sing N N 373 TRP OXT HXT sing N N 374 TYR N CA sing N N 375 TYR N H sing N N 376 TYR N H2 sing N N 377 TYR CA C sing N N 378 TYR CA CB sing N N 379 TYR CA HA sing N N 380 TYR C O doub N N 381 TYR C OXT sing N N 382 TYR CB CG sing N N 383 TYR CB HB2 sing N N 384 TYR CB HB3 sing N N 385 TYR CG CD1 doub Y N 386 TYR CG CD2 sing Y N 387 TYR CD1 CE1 sing Y N 388 TYR CD1 HD1 sing N N 389 TYR CD2 CE2 doub Y N 390 TYR CD2 HD2 sing N N 391 TYR CE1 CZ doub Y N 392 TYR CE1 HE1 sing N N 393 TYR CE2 CZ sing Y N 394 TYR CE2 HE2 sing N N 395 TYR CZ OH sing N N 396 TYR OH HH sing N N 397 TYR OXT HXT sing N N 398 VAL N CA sing N N 399 VAL N H sing N N 400 VAL N H2 sing N N 401 VAL CA C sing N N 402 VAL CA CB sing N N 403 VAL CA HA sing N N 404 VAL C O doub N N 405 VAL C OXT sing N N 406 VAL CB CG1 sing N N 407 VAL CB CG2 sing N N 408 VAL CB HB sing N N 409 VAL CG1 HG11 sing N N 410 VAL CG1 HG12 sing N N 411 VAL CG1 HG13 sing N N 412 VAL CG2 HG21 sing N N 413 VAL CG2 HG22 sing N N 414 VAL CG2 HG23 sing N N 415 VAL OXT HXT sing N N 416 # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1WTA _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9VVB _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012646 _atom_sites.fract_transf_matrix[1][2] 0.007301 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004278 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.2680 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 1.0497 # loop_ #