data_9VXE # _entry.id 9VXE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9VXE pdb_00009vxe 10.2210/pdb9vxe/pdb WWPDB D_1300061743 ? ? EMDB EMD-65407 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-22 ? 2 'EM metadata' 1 0 2026-07-22 ? 3 FSC 1 0 2026-07-22 ? 4 'Half map' 1 0 2026-07-22 1 5 'Half map' 1 0 2026-07-22 2 6 Image 1 0 2026-07-22 ? 7 'Primary map' 1 0 2026-07-22 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9VXE _pdbx_database_status.recvd_initial_deposition_date 2025-07-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'The cryo-EM structure of NapIM_type1 amyloid beta 42 fibril.' _pdbx_database_related.db_id EMD-65407 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email cuiby7@sjtu.edu.cn _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhao, Q.Y.' 1 ? 'Cui, B.Y.' 2 ? 'Liu, C.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The cryo-EM structure of NapIM_type1 amyloid beta 42 fibril.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, Q.Y.' 1 ? primary 'Cui, B.Y.' 2 ? primary 'Liu, C.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Amyloid-beta precursor protein' 3560.128 12 ? ? ? ? 2 non-polymer syn '~{N},~{N}-dimethyl-6-[(~{E})-2-(1,3,3-trimethylindol-1-ium-2-yl)ethenyl]naphthalen-2-amine' 355.495 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;APP,ABPP,APPI,Alzheimer disease amyloid A4 protein homolog,Alzheimer disease amyloid protein,Amyloid precursor protein,Amyloid-beta (A4) precursor protein,Amyloid-beta A4 protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_seq_one_letter_code_can GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_strand_id R,S,T,U,V,W,X,Y,Z,a,b,c _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '~{N},~{N}-dimethyl-6-[(~{E})-2-(1,3,3-trimethylindol-1-ium-2-yl)ethenyl]naphthalen-2-amine' _pdbx_entity_nonpoly.comp_id A1EUE # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 TYR n 1 3 GLU n 1 4 VAL n 1 5 HIS n 1 6 HIS n 1 7 GLN n 1 8 LYS n 1 9 LEU n 1 10 VAL n 1 11 PHE n 1 12 PHE n 1 13 ALA n 1 14 GLU n 1 15 ASP n 1 16 VAL n 1 17 GLY n 1 18 SER n 1 19 ASN n 1 20 LYS n 1 21 GLY n 1 22 ALA n 1 23 ILE n 1 24 ILE n 1 25 GLY n 1 26 LEU n 1 27 MET n 1 28 VAL n 1 29 GLY n 1 30 GLY n 1 31 VAL n 1 32 VAL n 1 33 ILE n 1 34 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 34 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1EUE non-polymer . '~{N},~{N}-dimethyl-6-[(~{E})-2-(1,3,3-trimethylindol-1-ium-2-yl)ethenyl]naphthalen-2-amine' ? 'C25 H27 N2 1' 355.495 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 9 9 GLY GLY R . n A 1 2 TYR 2 10 10 TYR TYR R . n A 1 3 GLU 3 11 11 GLU GLU R . n A 1 4 VAL 4 12 12 VAL VAL R . n A 1 5 HIS 5 13 13 HIS HIS R . n A 1 6 HIS 6 14 14 HIS HIS R . n A 1 7 GLN 7 15 15 GLN GLN R . n A 1 8 LYS 8 16 16 LYS LYS R . n A 1 9 LEU 9 17 17 LEU LEU R . n A 1 10 VAL 10 18 18 VAL VAL R . n A 1 11 PHE 11 19 19 PHE PHE R . n A 1 12 PHE 12 20 20 PHE PHE R . n A 1 13 ALA 13 21 21 ALA ALA R . n A 1 14 GLU 14 22 22 GLU GLU R . n A 1 15 ASP 15 23 23 ASP ASP R . n A 1 16 VAL 16 24 24 VAL VAL R . n A 1 17 GLY 17 25 25 GLY GLY R . n A 1 18 SER 18 26 26 SER SER R . n A 1 19 ASN 19 27 27 ASN ASN R . n A 1 20 LYS 20 28 28 LYS LYS R . n A 1 21 GLY 21 29 29 GLY GLY R . n A 1 22 ALA 22 30 30 ALA ALA R . n A 1 23 ILE 23 31 31 ILE ILE R . n A 1 24 ILE 24 32 32 ILE ILE R . n A 1 25 GLY 25 33 33 GLY GLY R . n A 1 26 LEU 26 34 34 LEU LEU R . n A 1 27 MET 27 35 35 MET MET R . n A 1 28 VAL 28 36 36 VAL VAL R . n A 1 29 GLY 29 37 37 GLY GLY R . n A 1 30 GLY 30 38 38 GLY GLY R . n A 1 31 VAL 31 39 39 VAL VAL R . n A 1 32 VAL 32 40 40 VAL VAL R . n A 1 33 ILE 33 41 41 ILE ILE R . n A 1 34 ALA 34 42 42 ALA ALA R . n B 1 1 GLY 1 9 9 GLY GLY S . n B 1 2 TYR 2 10 10 TYR TYR S . n B 1 3 GLU 3 11 11 GLU GLU S . n B 1 4 VAL 4 12 12 VAL VAL S . n B 1 5 HIS 5 13 13 HIS HIS S . n B 1 6 HIS 6 14 14 HIS HIS S . n B 1 7 GLN 7 15 15 GLN GLN S . n B 1 8 LYS 8 16 16 LYS LYS S . n B 1 9 LEU 9 17 17 LEU LEU S . n B 1 10 VAL 10 18 18 VAL VAL S . n B 1 11 PHE 11 19 19 PHE PHE S . n B 1 12 PHE 12 20 20 PHE PHE S . n B 1 13 ALA 13 21 21 ALA ALA S . n B 1 14 GLU 14 22 22 GLU GLU S . n B 1 15 ASP 15 23 23 ASP ASP S . n B 1 16 VAL 16 24 24 VAL VAL S . n B 1 17 GLY 17 25 25 GLY GLY S . n B 1 18 SER 18 26 26 SER SER S . n B 1 19 ASN 19 27 27 ASN ASN S . n B 1 20 LYS 20 28 28 LYS LYS S . n B 1 21 GLY 21 29 29 GLY GLY S . n B 1 22 ALA 22 30 30 ALA ALA S . n B 1 23 ILE 23 31 31 ILE ILE S . n B 1 24 ILE 24 32 32 ILE ILE S . n B 1 25 GLY 25 33 33 GLY GLY S . n B 1 26 LEU 26 34 34 LEU LEU S . n B 1 27 MET 27 35 35 MET MET S . n B 1 28 VAL 28 36 36 VAL VAL S . n B 1 29 GLY 29 37 37 GLY GLY S . n B 1 30 GLY 30 38 38 GLY GLY S . n B 1 31 VAL 31 39 39 VAL VAL S . n B 1 32 VAL 32 40 40 VAL VAL S . n B 1 33 ILE 33 41 41 ILE ILE S . n B 1 34 ALA 34 42 42 ALA ALA S . n C 1 1 GLY 1 9 9 GLY GLY T . n C 1 2 TYR 2 10 10 TYR TYR T . n C 1 3 GLU 3 11 11 GLU GLU T . n C 1 4 VAL 4 12 12 VAL VAL T . n C 1 5 HIS 5 13 13 HIS HIS T . n C 1 6 HIS 6 14 14 HIS HIS T . n C 1 7 GLN 7 15 15 GLN GLN T . n C 1 8 LYS 8 16 16 LYS LYS T . n C 1 9 LEU 9 17 17 LEU LEU T . n C 1 10 VAL 10 18 18 VAL VAL T . n C 1 11 PHE 11 19 19 PHE PHE T . n C 1 12 PHE 12 20 20 PHE PHE T . n C 1 13 ALA 13 21 21 ALA ALA T . n C 1 14 GLU 14 22 22 GLU GLU T . n C 1 15 ASP 15 23 23 ASP ASP T . n C 1 16 VAL 16 24 24 VAL VAL T . n C 1 17 GLY 17 25 25 GLY GLY T . n C 1 18 SER 18 26 26 SER SER T . n C 1 19 ASN 19 27 27 ASN ASN T . n C 1 20 LYS 20 28 28 LYS LYS T . n C 1 21 GLY 21 29 29 GLY GLY T . n C 1 22 ALA 22 30 30 ALA ALA T . n C 1 23 ILE 23 31 31 ILE ILE T . n C 1 24 ILE 24 32 32 ILE ILE T . n C 1 25 GLY 25 33 33 GLY GLY T . n C 1 26 LEU 26 34 34 LEU LEU T . n C 1 27 MET 27 35 35 MET MET T . n C 1 28 VAL 28 36 36 VAL VAL T . n C 1 29 GLY 29 37 37 GLY GLY T . n C 1 30 GLY 30 38 38 GLY GLY T . n C 1 31 VAL 31 39 39 VAL VAL T . n C 1 32 VAL 32 40 40 VAL VAL T . n C 1 33 ILE 33 41 41 ILE ILE T . n C 1 34 ALA 34 42 42 ALA ALA T . n D 1 1 GLY 1 9 9 GLY GLY U . n D 1 2 TYR 2 10 10 TYR TYR U . n D 1 3 GLU 3 11 11 GLU GLU U . n D 1 4 VAL 4 12 12 VAL VAL U . n D 1 5 HIS 5 13 13 HIS HIS U . n D 1 6 HIS 6 14 14 HIS HIS U . n D 1 7 GLN 7 15 15 GLN GLN U . n D 1 8 LYS 8 16 16 LYS LYS U . n D 1 9 LEU 9 17 17 LEU LEU U . n D 1 10 VAL 10 18 18 VAL VAL U . n D 1 11 PHE 11 19 19 PHE PHE U . n D 1 12 PHE 12 20 20 PHE PHE U . n D 1 13 ALA 13 21 21 ALA ALA U . n D 1 14 GLU 14 22 22 GLU GLU U . n D 1 15 ASP 15 23 23 ASP ASP U . n D 1 16 VAL 16 24 24 VAL VAL U . n D 1 17 GLY 17 25 25 GLY GLY U . n D 1 18 SER 18 26 26 SER SER U . n D 1 19 ASN 19 27 27 ASN ASN U . n D 1 20 LYS 20 28 28 LYS LYS U . n D 1 21 GLY 21 29 29 GLY GLY U . n D 1 22 ALA 22 30 30 ALA ALA U . n D 1 23 ILE 23 31 31 ILE ILE U . n D 1 24 ILE 24 32 32 ILE ILE U . n D 1 25 GLY 25 33 33 GLY GLY U . n D 1 26 LEU 26 34 34 LEU LEU U . n D 1 27 MET 27 35 35 MET MET U . n D 1 28 VAL 28 36 36 VAL VAL U . n D 1 29 GLY 29 37 37 GLY GLY U . n D 1 30 GLY 30 38 38 GLY GLY U . n D 1 31 VAL 31 39 39 VAL VAL U . n D 1 32 VAL 32 40 40 VAL VAL U . n D 1 33 ILE 33 41 41 ILE ILE U . n D 1 34 ALA 34 42 42 ALA ALA U . n E 1 1 GLY 1 9 9 GLY GLY V . n E 1 2 TYR 2 10 10 TYR TYR V . n E 1 3 GLU 3 11 11 GLU GLU V . n E 1 4 VAL 4 12 12 VAL VAL V . n E 1 5 HIS 5 13 13 HIS HIS V . n E 1 6 HIS 6 14 14 HIS HIS V . n E 1 7 GLN 7 15 15 GLN GLN V . n E 1 8 LYS 8 16 16 LYS LYS V . n E 1 9 LEU 9 17 17 LEU LEU V . n E 1 10 VAL 10 18 18 VAL VAL V . n E 1 11 PHE 11 19 19 PHE PHE V . n E 1 12 PHE 12 20 20 PHE PHE V . n E 1 13 ALA 13 21 21 ALA ALA V . n E 1 14 GLU 14 22 22 GLU GLU V . n E 1 15 ASP 15 23 23 ASP ASP V . n E 1 16 VAL 16 24 24 VAL VAL V . n E 1 17 GLY 17 25 25 GLY GLY V . n E 1 18 SER 18 26 26 SER SER V . n E 1 19 ASN 19 27 27 ASN ASN V . n E 1 20 LYS 20 28 28 LYS LYS V . n E 1 21 GLY 21 29 29 GLY GLY V . n E 1 22 ALA 22 30 30 ALA ALA V . n E 1 23 ILE 23 31 31 ILE ILE V . n E 1 24 ILE 24 32 32 ILE ILE V . n E 1 25 GLY 25 33 33 GLY GLY V . n E 1 26 LEU 26 34 34 LEU LEU V . n E 1 27 MET 27 35 35 MET MET V . n E 1 28 VAL 28 36 36 VAL VAL V . n E 1 29 GLY 29 37 37 GLY GLY V . n E 1 30 GLY 30 38 38 GLY GLY V . n E 1 31 VAL 31 39 39 VAL VAL V . n E 1 32 VAL 32 40 40 VAL VAL V . n E 1 33 ILE 33 41 41 ILE ILE V . n E 1 34 ALA 34 42 42 ALA ALA V . n F 1 1 GLY 1 9 9 GLY GLY W . n F 1 2 TYR 2 10 10 TYR TYR W . n F 1 3 GLU 3 11 11 GLU GLU W . n F 1 4 VAL 4 12 12 VAL VAL W . n F 1 5 HIS 5 13 13 HIS HIS W . n F 1 6 HIS 6 14 14 HIS HIS W . n F 1 7 GLN 7 15 15 GLN GLN W . n F 1 8 LYS 8 16 16 LYS LYS W . n F 1 9 LEU 9 17 17 LEU LEU W . n F 1 10 VAL 10 18 18 VAL VAL W . n F 1 11 PHE 11 19 19 PHE PHE W . n F 1 12 PHE 12 20 20 PHE PHE W . n F 1 13 ALA 13 21 21 ALA ALA W . n F 1 14 GLU 14 22 22 GLU GLU W . n F 1 15 ASP 15 23 23 ASP ASP W . n F 1 16 VAL 16 24 24 VAL VAL W . n F 1 17 GLY 17 25 25 GLY GLY W . n F 1 18 SER 18 26 26 SER SER W . n F 1 19 ASN 19 27 27 ASN ASN W . n F 1 20 LYS 20 28 28 LYS LYS W . n F 1 21 GLY 21 29 29 GLY GLY W . n F 1 22 ALA 22 30 30 ALA ALA W . n F 1 23 ILE 23 31 31 ILE ILE W . n F 1 24 ILE 24 32 32 ILE ILE W . n F 1 25 GLY 25 33 33 GLY GLY W . n F 1 26 LEU 26 34 34 LEU LEU W . n F 1 27 MET 27 35 35 MET MET W . n F 1 28 VAL 28 36 36 VAL VAL W . n F 1 29 GLY 29 37 37 GLY GLY W . n F 1 30 GLY 30 38 38 GLY GLY W . n F 1 31 VAL 31 39 39 VAL VAL W . n F 1 32 VAL 32 40 40 VAL VAL W . n F 1 33 ILE 33 41 41 ILE ILE W . n F 1 34 ALA 34 42 42 ALA ALA W . n G 1 1 GLY 1 9 9 GLY GLY X . n G 1 2 TYR 2 10 10 TYR TYR X . n G 1 3 GLU 3 11 11 GLU GLU X . n G 1 4 VAL 4 12 12 VAL VAL X . n G 1 5 HIS 5 13 13 HIS HIS X . n G 1 6 HIS 6 14 14 HIS HIS X . n G 1 7 GLN 7 15 15 GLN GLN X . n G 1 8 LYS 8 16 16 LYS LYS X . n G 1 9 LEU 9 17 17 LEU LEU X . n G 1 10 VAL 10 18 18 VAL VAL X . n G 1 11 PHE 11 19 19 PHE PHE X . n G 1 12 PHE 12 20 20 PHE PHE X . n G 1 13 ALA 13 21 21 ALA ALA X . n G 1 14 GLU 14 22 22 GLU GLU X . n G 1 15 ASP 15 23 23 ASP ASP X . n G 1 16 VAL 16 24 24 VAL VAL X . n G 1 17 GLY 17 25 25 GLY GLY X . n G 1 18 SER 18 26 26 SER SER X . n G 1 19 ASN 19 27 27 ASN ASN X . n G 1 20 LYS 20 28 28 LYS LYS X . n G 1 21 GLY 21 29 29 GLY GLY X . n G 1 22 ALA 22 30 30 ALA ALA X . n G 1 23 ILE 23 31 31 ILE ILE X . n G 1 24 ILE 24 32 32 ILE ILE X . n G 1 25 GLY 25 33 33 GLY GLY X . n G 1 26 LEU 26 34 34 LEU LEU X . n G 1 27 MET 27 35 35 MET MET X . n G 1 28 VAL 28 36 36 VAL VAL X . n G 1 29 GLY 29 37 37 GLY GLY X . n G 1 30 GLY 30 38 38 GLY GLY X . n G 1 31 VAL 31 39 39 VAL VAL X . n G 1 32 VAL 32 40 40 VAL VAL X . n G 1 33 ILE 33 41 41 ILE ILE X . n G 1 34 ALA 34 42 42 ALA ALA X . n H 1 1 GLY 1 9 9 GLY GLY Y . n H 1 2 TYR 2 10 10 TYR TYR Y . n H 1 3 GLU 3 11 11 GLU GLU Y . n H 1 4 VAL 4 12 12 VAL VAL Y . n H 1 5 HIS 5 13 13 HIS HIS Y . n H 1 6 HIS 6 14 14 HIS HIS Y . n H 1 7 GLN 7 15 15 GLN GLN Y . n H 1 8 LYS 8 16 16 LYS LYS Y . n H 1 9 LEU 9 17 17 LEU LEU Y . n H 1 10 VAL 10 18 18 VAL VAL Y . n H 1 11 PHE 11 19 19 PHE PHE Y . n H 1 12 PHE 12 20 20 PHE PHE Y . n H 1 13 ALA 13 21 21 ALA ALA Y . n H 1 14 GLU 14 22 22 GLU GLU Y . n H 1 15 ASP 15 23 23 ASP ASP Y . n H 1 16 VAL 16 24 24 VAL VAL Y . n H 1 17 GLY 17 25 25 GLY GLY Y . n H 1 18 SER 18 26 26 SER SER Y . n H 1 19 ASN 19 27 27 ASN ASN Y . n H 1 20 LYS 20 28 28 LYS LYS Y . n H 1 21 GLY 21 29 29 GLY GLY Y . n H 1 22 ALA 22 30 30 ALA ALA Y . n H 1 23 ILE 23 31 31 ILE ILE Y . n H 1 24 ILE 24 32 32 ILE ILE Y . n H 1 25 GLY 25 33 33 GLY GLY Y . n H 1 26 LEU 26 34 34 LEU LEU Y . n H 1 27 MET 27 35 35 MET MET Y . n H 1 28 VAL 28 36 36 VAL VAL Y . n H 1 29 GLY 29 37 37 GLY GLY Y . n H 1 30 GLY 30 38 38 GLY GLY Y . n H 1 31 VAL 31 39 39 VAL VAL Y . n H 1 32 VAL 32 40 40 VAL VAL Y . n H 1 33 ILE 33 41 41 ILE ILE Y . n H 1 34 ALA 34 42 42 ALA ALA Y . n I 1 1 GLY 1 9 9 GLY GLY Z . n I 1 2 TYR 2 10 10 TYR TYR Z . n I 1 3 GLU 3 11 11 GLU GLU Z . n I 1 4 VAL 4 12 12 VAL VAL Z . n I 1 5 HIS 5 13 13 HIS HIS Z . n I 1 6 HIS 6 14 14 HIS HIS Z . n I 1 7 GLN 7 15 15 GLN GLN Z . n I 1 8 LYS 8 16 16 LYS LYS Z . n I 1 9 LEU 9 17 17 LEU LEU Z . n I 1 10 VAL 10 18 18 VAL VAL Z . n I 1 11 PHE 11 19 19 PHE PHE Z . n I 1 12 PHE 12 20 20 PHE PHE Z . n I 1 13 ALA 13 21 21 ALA ALA Z . n I 1 14 GLU 14 22 22 GLU GLU Z . n I 1 15 ASP 15 23 23 ASP ASP Z . n I 1 16 VAL 16 24 24 VAL VAL Z . n I 1 17 GLY 17 25 25 GLY GLY Z . n I 1 18 SER 18 26 26 SER SER Z . n I 1 19 ASN 19 27 27 ASN ASN Z . n I 1 20 LYS 20 28 28 LYS LYS Z . n I 1 21 GLY 21 29 29 GLY GLY Z . n I 1 22 ALA 22 30 30 ALA ALA Z . n I 1 23 ILE 23 31 31 ILE ILE Z . n I 1 24 ILE 24 32 32 ILE ILE Z . n I 1 25 GLY 25 33 33 GLY GLY Z . n I 1 26 LEU 26 34 34 LEU LEU Z . n I 1 27 MET 27 35 35 MET MET Z . n I 1 28 VAL 28 36 36 VAL VAL Z . n I 1 29 GLY 29 37 37 GLY GLY Z . n I 1 30 GLY 30 38 38 GLY GLY Z . n I 1 31 VAL 31 39 39 VAL VAL Z . n I 1 32 VAL 32 40 40 VAL VAL Z . n I 1 33 ILE 33 41 41 ILE ILE Z . n I 1 34 ALA 34 42 42 ALA ALA Z . n J 1 1 GLY 1 9 9 GLY GLY a . n J 1 2 TYR 2 10 10 TYR TYR a . n J 1 3 GLU 3 11 11 GLU GLU a . n J 1 4 VAL 4 12 12 VAL VAL a . n J 1 5 HIS 5 13 13 HIS HIS a . n J 1 6 HIS 6 14 14 HIS HIS a . n J 1 7 GLN 7 15 15 GLN GLN a . n J 1 8 LYS 8 16 16 LYS LYS a . n J 1 9 LEU 9 17 17 LEU LEU a . n J 1 10 VAL 10 18 18 VAL VAL a . n J 1 11 PHE 11 19 19 PHE PHE a . n J 1 12 PHE 12 20 20 PHE PHE a . n J 1 13 ALA 13 21 21 ALA ALA a . n J 1 14 GLU 14 22 22 GLU GLU a . n J 1 15 ASP 15 23 23 ASP ASP a . n J 1 16 VAL 16 24 24 VAL VAL a . n J 1 17 GLY 17 25 25 GLY GLY a . n J 1 18 SER 18 26 26 SER SER a . n J 1 19 ASN 19 27 27 ASN ASN a . n J 1 20 LYS 20 28 28 LYS LYS a . n J 1 21 GLY 21 29 29 GLY GLY a . n J 1 22 ALA 22 30 30 ALA ALA a . n J 1 23 ILE 23 31 31 ILE ILE a . n J 1 24 ILE 24 32 32 ILE ILE a . n J 1 25 GLY 25 33 33 GLY GLY a . n J 1 26 LEU 26 34 34 LEU LEU a . n J 1 27 MET 27 35 35 MET MET a . n J 1 28 VAL 28 36 36 VAL VAL a . n J 1 29 GLY 29 37 37 GLY GLY a . n J 1 30 GLY 30 38 38 GLY GLY a . n J 1 31 VAL 31 39 39 VAL VAL a . n J 1 32 VAL 32 40 40 VAL VAL a . n J 1 33 ILE 33 41 41 ILE ILE a . n J 1 34 ALA 34 42 42 ALA ALA a . n K 1 1 GLY 1 9 9 GLY GLY b . n K 1 2 TYR 2 10 10 TYR TYR b . n K 1 3 GLU 3 11 11 GLU GLU b . n K 1 4 VAL 4 12 12 VAL VAL b . n K 1 5 HIS 5 13 13 HIS HIS b . n K 1 6 HIS 6 14 14 HIS HIS b . n K 1 7 GLN 7 15 15 GLN GLN b . n K 1 8 LYS 8 16 16 LYS LYS b . n K 1 9 LEU 9 17 17 LEU LEU b . n K 1 10 VAL 10 18 18 VAL VAL b . n K 1 11 PHE 11 19 19 PHE PHE b . n K 1 12 PHE 12 20 20 PHE PHE b . n K 1 13 ALA 13 21 21 ALA ALA b . n K 1 14 GLU 14 22 22 GLU GLU b . n K 1 15 ASP 15 23 23 ASP ASP b . n K 1 16 VAL 16 24 24 VAL VAL b . n K 1 17 GLY 17 25 25 GLY GLY b . n K 1 18 SER 18 26 26 SER SER b . n K 1 19 ASN 19 27 27 ASN ASN b . n K 1 20 LYS 20 28 28 LYS LYS b . n K 1 21 GLY 21 29 29 GLY GLY b . n K 1 22 ALA 22 30 30 ALA ALA b . n K 1 23 ILE 23 31 31 ILE ILE b . n K 1 24 ILE 24 32 32 ILE ILE b . n K 1 25 GLY 25 33 33 GLY GLY b . n K 1 26 LEU 26 34 34 LEU LEU b . n K 1 27 MET 27 35 35 MET MET b . n K 1 28 VAL 28 36 36 VAL VAL b . n K 1 29 GLY 29 37 37 GLY GLY b . n K 1 30 GLY 30 38 38 GLY GLY b . n K 1 31 VAL 31 39 39 VAL VAL b . n K 1 32 VAL 32 40 40 VAL VAL b . n K 1 33 ILE 33 41 41 ILE ILE b . n K 1 34 ALA 34 42 42 ALA ALA b . n L 1 1 GLY 1 9 9 GLY GLY c . n L 1 2 TYR 2 10 10 TYR TYR c . n L 1 3 GLU 3 11 11 GLU GLU c . n L 1 4 VAL 4 12 12 VAL VAL c . n L 1 5 HIS 5 13 13 HIS HIS c . n L 1 6 HIS 6 14 14 HIS HIS c . n L 1 7 GLN 7 15 15 GLN GLN c . n L 1 8 LYS 8 16 16 LYS LYS c . n L 1 9 LEU 9 17 17 LEU LEU c . n L 1 10 VAL 10 18 18 VAL VAL c . n L 1 11 PHE 11 19 19 PHE PHE c . n L 1 12 PHE 12 20 20 PHE PHE c . n L 1 13 ALA 13 21 21 ALA ALA c . n L 1 14 GLU 14 22 22 GLU GLU c . n L 1 15 ASP 15 23 23 ASP ASP c . n L 1 16 VAL 16 24 24 VAL VAL c . n L 1 17 GLY 17 25 25 GLY GLY c . n L 1 18 SER 18 26 26 SER SER c . n L 1 19 ASN 19 27 27 ASN ASN c . n L 1 20 LYS 20 28 28 LYS LYS c . n L 1 21 GLY 21 29 29 GLY GLY c . n L 1 22 ALA 22 30 30 ALA ALA c . n L 1 23 ILE 23 31 31 ILE ILE c . n L 1 24 ILE 24 32 32 ILE ILE c . n L 1 25 GLY 25 33 33 GLY GLY c . n L 1 26 LEU 26 34 34 LEU LEU c . n L 1 27 MET 27 35 35 MET MET c . n L 1 28 VAL 28 36 36 VAL VAL c . n L 1 29 GLY 29 37 37 GLY GLY c . n L 1 30 GLY 30 38 38 GLY GLY c . n L 1 31 VAL 31 39 39 VAL VAL c . n L 1 32 VAL 32 40 40 VAL VAL c . n L 1 33 ILE 33 41 41 ILE ILE c . n L 1 34 ALA 34 42 42 ALA ALA c . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1EUE _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1EUE _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id M _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id A1EUE _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id A1EUE _pdbx_nonpoly_scheme.auth_mon_id NAP _pdbx_nonpoly_scheme.pdb_strand_id W _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9VXE _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9VXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9VXE _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9VXE _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.009 ? 2040 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.717 ? 2744 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 9.772 ? 1136 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.068 ? 312 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 352 ? f_plane_restr ? ? ? # _struct.entry_id 9VXE _struct.title 'The cryo-EM structure of NapIM_type1 amyloid beta 42 fibril.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9VXE _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _struct_ref.pdbx_align_begin 680 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9VXE R 1 ? 34 ? P05067 680 ? 713 ? 9 42 2 1 9VXE S 1 ? 34 ? P05067 680 ? 713 ? 9 42 3 1 9VXE T 1 ? 34 ? P05067 680 ? 713 ? 9 42 4 1 9VXE U 1 ? 34 ? P05067 680 ? 713 ? 9 42 5 1 9VXE V 1 ? 34 ? P05067 680 ? 713 ? 9 42 6 1 9VXE W 1 ? 34 ? P05067 680 ? 713 ? 9 42 7 1 9VXE X 1 ? 34 ? P05067 680 ? 713 ? 9 42 8 1 9VXE Y 1 ? 34 ? P05067 680 ? 713 ? 9 42 9 1 9VXE Z 1 ? 34 ? P05067 680 ? 713 ? 9 42 10 1 9VXE a 1 ? 34 ? P05067 680 ? 713 ? 9 42 11 1 9VXE b 1 ? 34 ? P05067 680 ? 713 ? 9 42 12 1 9VXE c 1 ? 34 ? P05067 680 ? 713 ? 9 42 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? AA3 ? 6 ? AA4 ? 6 ? AA5 ? 6 ? AA6 ? 6 ? AA7 ? 6 ? AA8 ? 6 ? AA9 ? 6 ? AB1 ? 6 ? AB2 ? 6 ? AB3 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA3 5 6 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA4 5 6 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA5 5 6 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA6 5 6 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA7 5 6 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA8 5 6 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AA9 5 6 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB1 4 5 ? parallel AB1 5 6 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB2 3 4 ? parallel AB2 4 5 ? parallel AB2 5 6 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB3 3 4 ? parallel AB3 4 5 ? parallel AB3 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 4 ? HIS A 5 ? VAL R 12 HIS R 13 AA1 2 VAL E 4 ? HIS E 5 ? VAL V 12 HIS V 13 AA1 3 VAL C 4 ? HIS C 5 ? VAL T 12 HIS T 13 AA1 4 VAL G 4 ? HIS G 5 ? VAL X 12 HIS X 13 AA1 5 VAL I 4 ? HIS I 5 ? VAL Z 12 HIS Z 13 AA1 6 VAL K 4 ? HIS K 5 ? VAL b 12 HIS b 13 AA2 1 VAL A 10 ? PHE A 12 ? VAL R 18 PHE R 20 AA2 2 VAL E 10 ? PHE E 12 ? VAL V 18 PHE V 20 AA2 3 VAL C 10 ? PHE C 12 ? VAL T 18 PHE T 20 AA2 4 VAL G 10 ? PHE G 12 ? VAL X 18 PHE X 20 AA2 5 VAL I 10 ? PHE I 12 ? VAL Z 18 PHE Z 20 AA2 6 VAL K 10 ? PHE K 12 ? VAL b 18 PHE b 20 AA3 1 VAL A 16 ? GLY A 17 ? VAL R 24 GLY R 25 AA3 2 VAL E 16 ? GLY E 17 ? VAL V 24 GLY V 25 AA3 3 VAL C 16 ? GLY C 17 ? VAL T 24 GLY T 25 AA3 4 VAL G 16 ? GLY G 17 ? VAL X 24 GLY X 25 AA3 5 VAL I 16 ? GLY I 17 ? VAL Z 24 GLY Z 25 AA3 6 VAL K 16 ? GLY K 17 ? VAL b 24 GLY b 25 AA4 1 ILE A 23 ? ILE A 24 ? ILE R 31 ILE R 32 AA4 2 ILE E 23 ? ILE E 24 ? ILE V 31 ILE V 32 AA4 3 ILE C 23 ? ILE C 24 ? ILE T 31 ILE T 32 AA4 4 ILE G 23 ? ILE G 24 ? ILE X 31 ILE X 32 AA4 5 ILE I 23 ? ILE I 24 ? ILE Z 31 ILE Z 32 AA4 6 ILE K 23 ? ILE K 24 ? ILE b 31 ILE b 32 AA5 1 MET A 27 ? VAL A 28 ? MET R 35 VAL R 36 AA5 2 MET E 27 ? VAL E 28 ? MET V 35 VAL V 36 AA5 3 MET C 27 ? VAL C 28 ? MET T 35 VAL T 36 AA5 4 MET G 27 ? VAL G 28 ? MET X 35 VAL X 36 AA5 5 MET I 27 ? VAL I 28 ? MET Z 35 VAL Z 36 AA5 6 MET K 27 ? VAL K 28 ? MET b 35 VAL b 36 AA6 1 VAL A 32 ? ILE A 33 ? VAL R 40 ILE R 41 AA6 2 VAL E 32 ? ILE E 33 ? VAL V 40 ILE V 41 AA6 3 VAL C 32 ? ILE C 33 ? VAL T 40 ILE T 41 AA6 4 VAL G 32 ? ILE G 33 ? VAL X 40 ILE X 41 AA6 5 VAL I 32 ? ILE I 33 ? VAL Z 40 ILE Z 41 AA6 6 VAL K 32 ? ILE K 33 ? VAL b 40 ILE b 41 AA7 1 VAL B 4 ? HIS B 5 ? VAL S 12 HIS S 13 AA7 2 VAL F 4 ? HIS F 5 ? VAL W 12 HIS W 13 AA7 3 VAL D 4 ? HIS D 5 ? VAL U 12 HIS U 13 AA7 4 VAL H 4 ? HIS H 5 ? VAL Y 12 HIS Y 13 AA7 5 VAL J 4 ? HIS J 5 ? VAL a 12 HIS a 13 AA7 6 VAL L 4 ? HIS L 5 ? VAL c 12 HIS c 13 AA8 1 VAL B 10 ? PHE B 12 ? VAL S 18 PHE S 20 AA8 2 VAL F 10 ? PHE F 12 ? VAL W 18 PHE W 20 AA8 3 VAL D 10 ? PHE D 12 ? VAL U 18 PHE U 20 AA8 4 VAL H 10 ? PHE H 12 ? VAL Y 18 PHE Y 20 AA8 5 VAL J 10 ? PHE J 12 ? VAL a 18 PHE a 20 AA8 6 VAL L 10 ? PHE L 12 ? VAL c 18 PHE c 20 AA9 1 VAL B 16 ? GLY B 17 ? VAL S 24 GLY S 25 AA9 2 VAL F 16 ? GLY F 17 ? VAL W 24 GLY W 25 AA9 3 VAL D 16 ? GLY D 17 ? VAL U 24 GLY U 25 AA9 4 VAL H 16 ? GLY H 17 ? VAL Y 24 GLY Y 25 AA9 5 VAL J 16 ? GLY J 17 ? VAL a 24 GLY a 25 AA9 6 VAL L 16 ? GLY L 17 ? VAL c 24 GLY c 25 AB1 1 ILE B 23 ? ILE B 24 ? ILE S 31 ILE S 32 AB1 2 ILE F 23 ? ILE F 24 ? ILE W 31 ILE W 32 AB1 3 ILE D 23 ? ILE D 24 ? ILE U 31 ILE U 32 AB1 4 ILE H 23 ? ILE H 24 ? ILE Y 31 ILE Y 32 AB1 5 ILE J 23 ? ILE J 24 ? ILE a 31 ILE a 32 AB1 6 ILE L 23 ? ILE L 24 ? ILE c 31 ILE c 32 AB2 1 MET B 27 ? VAL B 28 ? MET S 35 VAL S 36 AB2 2 MET F 27 ? VAL F 28 ? MET W 35 VAL W 36 AB2 3 MET D 27 ? VAL D 28 ? MET U 35 VAL U 36 AB2 4 MET H 27 ? VAL H 28 ? MET Y 35 VAL Y 36 AB2 5 MET J 27 ? VAL J 28 ? MET a 35 VAL a 36 AB2 6 MET L 27 ? VAL L 28 ? MET c 35 VAL c 36 AB3 1 VAL B 32 ? ILE B 33 ? VAL S 40 ILE S 41 AB3 2 VAL F 32 ? ILE F 33 ? VAL W 40 ILE W 41 AB3 3 VAL D 32 ? ILE D 33 ? VAL U 40 ILE U 41 AB3 4 VAL H 32 ? ILE H 33 ? VAL Y 40 ILE Y 41 AB3 5 VAL J 32 ? ILE J 33 ? VAL a 40 ILE a 41 AB3 6 VAL L 32 ? ILE L 33 ? VAL c 40 ILE c 41 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 4 ? N VAL R 12 O HIS E 5 ? O HIS V 13 AA1 2 3 O VAL E 4 ? O VAL V 12 N HIS C 5 ? N HIS T 13 AA1 3 4 N VAL C 4 ? N VAL T 12 O HIS G 5 ? O HIS X 13 AA1 4 5 N VAL G 4 ? N VAL X 12 O HIS I 5 ? O HIS Z 13 AA1 5 6 N VAL I 4 ? N VAL Z 12 O HIS K 5 ? O HIS b 13 AA2 1 2 N PHE A 11 ? N PHE R 19 O VAL E 10 ? O VAL V 18 AA2 2 3 O PHE E 11 ? O PHE V 19 N VAL C 10 ? N VAL T 18 AA2 3 4 N PHE C 11 ? N PHE T 19 O VAL G 10 ? O VAL X 18 AA2 4 5 N PHE G 11 ? N PHE X 19 O VAL I 10 ? O VAL Z 18 AA2 5 6 N PHE I 11 ? N PHE Z 19 O VAL K 10 ? O VAL b 18 AA3 1 2 N VAL A 16 ? N VAL R 24 O GLY E 17 ? O GLY V 25 AA3 2 3 O VAL E 16 ? O VAL V 24 N GLY C 17 ? N GLY T 25 AA3 3 4 N VAL C 16 ? N VAL T 24 O GLY G 17 ? O GLY X 25 AA3 4 5 N VAL G 16 ? N VAL X 24 O GLY I 17 ? O GLY Z 25 AA3 5 6 N VAL I 16 ? N VAL Z 24 O GLY K 17 ? O GLY b 25 AA4 1 2 N ILE A 23 ? N ILE R 31 O ILE E 24 ? O ILE V 32 AA4 2 3 O ILE E 23 ? O ILE V 31 N ILE C 24 ? N ILE T 32 AA4 3 4 N ILE C 23 ? N ILE T 31 O ILE G 24 ? O ILE X 32 AA4 4 5 N ILE G 23 ? N ILE X 31 O ILE I 24 ? O ILE Z 32 AA4 5 6 N ILE I 23 ? N ILE Z 31 O ILE K 24 ? O ILE b 32 AA5 1 2 N VAL A 28 ? N VAL R 36 O MET E 27 ? O MET V 35 AA5 2 3 O VAL E 28 ? O VAL V 36 N MET C 27 ? N MET T 35 AA5 3 4 N VAL C 28 ? N VAL T 36 O MET G 27 ? O MET X 35 AA5 4 5 N VAL G 28 ? N VAL X 36 O MET I 27 ? O MET Z 35 AA5 5 6 N VAL I 28 ? N VAL Z 36 O MET K 27 ? O MET b 35 AA6 1 2 N ILE A 33 ? N ILE R 41 O VAL E 32 ? O VAL V 40 AA6 2 3 O ILE E 33 ? O ILE V 41 N VAL C 32 ? N VAL T 40 AA6 3 4 N ILE C 33 ? N ILE T 41 O VAL G 32 ? O VAL X 40 AA6 4 5 N ILE G 33 ? N ILE X 41 O VAL I 32 ? O VAL Z 40 AA6 5 6 N ILE I 33 ? N ILE Z 41 O VAL K 32 ? O VAL b 40 AA7 1 2 N VAL B 4 ? N VAL S 12 O HIS F 5 ? O HIS W 13 AA7 2 3 O VAL F 4 ? O VAL W 12 N HIS D 5 ? N HIS U 13 AA7 3 4 N VAL D 4 ? N VAL U 12 O HIS H 5 ? O HIS Y 13 AA7 4 5 N VAL H 4 ? N VAL Y 12 O HIS J 5 ? O HIS a 13 AA7 5 6 N VAL J 4 ? N VAL a 12 O HIS L 5 ? O HIS c 13 AA8 1 2 N PHE B 11 ? N PHE S 19 O VAL F 10 ? O VAL W 18 AA8 2 3 O PHE F 11 ? O PHE W 19 N VAL D 10 ? N VAL U 18 AA8 3 4 N PHE D 11 ? N PHE U 19 O VAL H 10 ? O VAL Y 18 AA8 4 5 N PHE H 11 ? N PHE Y 19 O VAL J 10 ? O VAL a 18 AA8 5 6 N PHE J 11 ? N PHE a 19 O VAL L 10 ? O VAL c 18 AA9 1 2 N VAL B 16 ? N VAL S 24 O GLY F 17 ? O GLY W 25 AA9 2 3 O VAL F 16 ? O VAL W 24 N GLY D 17 ? N GLY U 25 AA9 3 4 N VAL D 16 ? N VAL U 24 O GLY H 17 ? O GLY Y 25 AA9 4 5 N VAL H 16 ? N VAL Y 24 O GLY J 17 ? O GLY a 25 AA9 5 6 N VAL J 16 ? N VAL a 24 O GLY L 17 ? O GLY c 25 AB1 1 2 N ILE B 23 ? N ILE S 31 O ILE F 24 ? O ILE W 32 AB1 2 3 O ILE F 23 ? O ILE W 31 N ILE D 24 ? N ILE U 32 AB1 3 4 N ILE D 23 ? N ILE U 31 O ILE H 24 ? O ILE Y 32 AB1 4 5 N ILE H 23 ? N ILE Y 31 O ILE J 24 ? O ILE a 32 AB1 5 6 N ILE J 23 ? N ILE a 31 O ILE L 24 ? O ILE c 32 AB2 1 2 N VAL B 28 ? N VAL S 36 O MET F 27 ? O MET W 35 AB2 2 3 O VAL F 28 ? O VAL W 36 N MET D 27 ? N MET U 35 AB2 3 4 N VAL D 28 ? N VAL U 36 O MET H 27 ? O MET Y 35 AB2 4 5 N VAL H 28 ? N VAL Y 36 O MET J 27 ? O MET a 35 AB2 5 6 N VAL J 28 ? N VAL a 36 O MET L 27 ? O MET c 35 AB3 1 2 N ILE B 33 ? N ILE S 41 O VAL F 32 ? O VAL W 40 AB3 2 3 O ILE F 33 ? O ILE W 41 N VAL D 32 ? N VAL U 40 AB3 3 4 N ILE D 33 ? N ILE U 41 O VAL H 32 ? O VAL Y 40 AB3 4 5 N ILE H 33 ? N ILE Y 41 O VAL J 32 ? O VAL a 40 AB3 5 6 N ILE J 33 ? N ILE a 41 O VAL L 32 ? O VAL c 40 # _pdbx_entry_details.entry_id 9VXE _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9VXE _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9VXE _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 11491 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'amyloid beta' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9VXE _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9VXE _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9VXE _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1EUE C01 C Y N 1 A1EUE C02 C Y N 2 A1EUE C03 C Y N 3 A1EUE C04 C Y N 4 A1EUE C05 C Y N 5 A1EUE C06 C Y N 6 A1EUE C07 C N N 7 A1EUE C08 C N N 8 A1EUE C09 C N N 9 A1EUE C10 C N N 10 A1EUE C11 C Y N 11 A1EUE C12 C Y N 12 A1EUE C13 C Y N 13 A1EUE C14 C Y N 14 A1EUE C15 C Y N 15 A1EUE C16 C Y N 16 A1EUE C17 C Y N 17 A1EUE C18 C Y N 18 A1EUE C19 C Y N 19 A1EUE C20 C Y N 20 A1EUE N21 N N N 21 A1EUE C22 C N N 22 A1EUE C23 C N N 23 A1EUE N24 N N N 24 A1EUE C25 C N N 25 A1EUE C26 C N N 26 A1EUE C27 C N N 27 A1EUE H1 H N N 28 A1EUE H2 H N N 29 A1EUE H3 H N N 30 A1EUE H4 H N N 31 A1EUE H5 H N N 32 A1EUE H6 H N N 33 A1EUE H8 H N N 34 A1EUE H9 H N N 35 A1EUE H10 H N N 36 A1EUE H11 H N N 37 A1EUE H12 H N N 38 A1EUE H13 H N N 39 A1EUE H14 H N N 40 A1EUE H15 H N N 41 A1EUE H16 H N N 42 A1EUE H17 H N N 43 A1EUE H18 H N N 44 A1EUE H19 H N N 45 A1EUE H20 H N N 46 A1EUE H21 H N N 47 A1EUE H22 H N N 48 A1EUE H23 H N N 49 A1EUE H24 H N N 50 A1EUE H25 H N N 51 A1EUE H26 H N N 52 A1EUE H27 H N N 53 A1EUE H28 H N N 54 ALA N N N N 55 ALA CA C N S 56 ALA C C N N 57 ALA O O N N 58 ALA CB C N N 59 ALA OXT O N N 60 ALA H H N N 61 ALA H2 H N N 62 ALA HA H N N 63 ALA HB1 H N N 64 ALA HB2 H N N 65 ALA HB3 H N N 66 ALA HXT H N N 67 ASN N N N N 68 ASN CA C N S 69 ASN C C N N 70 ASN O O N N 71 ASN CB C N N 72 ASN CG C N N 73 ASN OD1 O N N 74 ASN ND2 N N N 75 ASN OXT O N N 76 ASN H H N N 77 ASN H2 H N N 78 ASN HA H N N 79 ASN HB2 H N N 80 ASN HB3 H N N 81 ASN HD21 H N N 82 ASN HD22 H N N 83 ASN HXT H N N 84 ASP N N N N 85 ASP CA C N S 86 ASP C C N N 87 ASP O O N N 88 ASP CB C N N 89 ASP CG C N N 90 ASP OD1 O N N 91 ASP OD2 O N N 92 ASP OXT O N N 93 ASP H H N N 94 ASP H2 H N N 95 ASP HA H N N 96 ASP HB2 H N N 97 ASP HB3 H N N 98 ASP HD2 H N N 99 ASP HXT H N N 100 GLN N N N N 101 GLN CA C N S 102 GLN C C N N 103 GLN O O N N 104 GLN CB C N N 105 GLN CG C N N 106 GLN CD C N N 107 GLN OE1 O N N 108 GLN NE2 N N N 109 GLN OXT O N N 110 GLN H H N N 111 GLN H2 H N N 112 GLN HA H N N 113 GLN HB2 H N N 114 GLN HB3 H N N 115 GLN HG2 H N N 116 GLN HG3 H N N 117 GLN HE21 H N N 118 GLN HE22 H N N 119 GLN HXT H N N 120 GLU N N N N 121 GLU CA C N S 122 GLU C C N N 123 GLU O O N N 124 GLU CB C N N 125 GLU CG C N N 126 GLU CD C N N 127 GLU OE1 O N N 128 GLU OE2 O N N 129 GLU OXT O N N 130 GLU H H N N 131 GLU H2 H N N 132 GLU HA H N N 133 GLU HB2 H N N 134 GLU HB3 H N N 135 GLU HG2 H N N 136 GLU HG3 H N N 137 GLU HE2 H N N 138 GLU HXT H N N 139 GLY N N N N 140 GLY CA C N N 141 GLY C C N N 142 GLY O O N N 143 GLY OXT O N N 144 GLY H H N N 145 GLY H2 H N N 146 GLY HA2 H N N 147 GLY HA3 H N N 148 GLY HXT H N N 149 HIS N N N N 150 HIS CA C N S 151 HIS C C N N 152 HIS O O N N 153 HIS CB C N N 154 HIS CG C Y N 155 HIS ND1 N Y N 156 HIS CD2 C Y N 157 HIS CE1 C Y N 158 HIS NE2 N Y N 159 HIS OXT O N N 160 HIS H H N N 161 HIS H2 H N N 162 HIS HA H N N 163 HIS HB2 H N N 164 HIS HB3 H N N 165 HIS HD1 H N N 166 HIS HD2 H N N 167 HIS HE1 H N N 168 HIS HE2 H N N 169 HIS HXT H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 SER N N N N 283 SER CA C N S 284 SER C C N N 285 SER O O N N 286 SER CB C N N 287 SER OG O N N 288 SER OXT O N N 289 SER H H N N 290 SER H2 H N N 291 SER HA H N N 292 SER HB2 H N N 293 SER HB3 H N N 294 SER HG H N N 295 SER HXT H N N 296 TYR N N N N 297 TYR CA C N S 298 TYR C C N N 299 TYR O O N N 300 TYR CB C N N 301 TYR CG C Y N 302 TYR CD1 C Y N 303 TYR CD2 C Y N 304 TYR CE1 C Y N 305 TYR CE2 C Y N 306 TYR CZ C Y N 307 TYR OH O N N 308 TYR OXT O N N 309 TYR H H N N 310 TYR H2 H N N 311 TYR HA H N N 312 TYR HB2 H N N 313 TYR HB3 H N N 314 TYR HD1 H N N 315 TYR HD2 H N N 316 TYR HE1 H N N 317 TYR HE2 H N N 318 TYR HH H N N 319 TYR HXT H N N 320 VAL N N N N 321 VAL CA C N S 322 VAL C C N N 323 VAL O O N N 324 VAL CB C N N 325 VAL CG1 C N N 326 VAL CG2 C N N 327 VAL OXT O N N 328 VAL H H N N 329 VAL H2 H N N 330 VAL HA H N N 331 VAL HB H N N 332 VAL HG11 H N N 333 VAL HG12 H N N 334 VAL HG13 H N N 335 VAL HG21 H N N 336 VAL HG22 H N N 337 VAL HG23 H N N 338 VAL HXT H N N 339 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EUE C23 N21 sing N N 1 A1EUE C22 N21 sing N N 2 A1EUE N21 C18 sing N N 3 A1EUE C18 C19 doub Y N 4 A1EUE C18 C17 sing Y N 5 A1EUE C19 C20 sing Y N 6 A1EUE C17 C14 doub Y N 7 A1EUE C20 C13 doub Y N 8 A1EUE C14 C13 sing Y N 9 A1EUE C14 C15 sing Y N 10 A1EUE C13 C12 sing Y N 11 A1EUE C15 C16 doub Y N 12 A1EUE C12 C11 doub Y N 13 A1EUE C16 C11 sing Y N 14 A1EUE C11 C10 sing N N 15 A1EUE C10 C09 doub N E 16 A1EUE C09 C08 sing N N 17 A1EUE C27 C07 sing N N 18 A1EUE C08 C07 sing N N 19 A1EUE C08 N24 doub N N 20 A1EUE C26 C07 sing N N 21 A1EUE C07 C03 sing N N 22 A1EUE C25 N24 sing N N 23 A1EUE N24 C02 sing N N 24 A1EUE C03 C02 doub Y N 25 A1EUE C03 C04 sing Y N 26 A1EUE C02 C01 sing Y N 27 A1EUE C04 C05 doub Y N 28 A1EUE C01 C06 doub Y N 29 A1EUE C05 C06 sing Y N 30 A1EUE C01 H1 sing N N 31 A1EUE C04 H2 sing N N 32 A1EUE C05 H3 sing N N 33 A1EUE C06 H4 sing N N 34 A1EUE C09 H5 sing N N 35 A1EUE C10 H6 sing N N 36 A1EUE C12 H8 sing N N 37 A1EUE C15 H9 sing N N 38 A1EUE C16 H10 sing N N 39 A1EUE C17 H11 sing N N 40 A1EUE C19 H12 sing N N 41 A1EUE C20 H13 sing N N 42 A1EUE C22 H14 sing N N 43 A1EUE C22 H15 sing N N 44 A1EUE C22 H16 sing N N 45 A1EUE C23 H17 sing N N 46 A1EUE C23 H18 sing N N 47 A1EUE C23 H19 sing N N 48 A1EUE C25 H20 sing N N 49 A1EUE C25 H21 sing N N 50 A1EUE C25 H22 sing N N 51 A1EUE C26 H23 sing N N 52 A1EUE C26 H24 sing N N 53 A1EUE C26 H25 sing N N 54 A1EUE C27 H26 sing N N 55 A1EUE C27 H27 sing N N 56 A1EUE C27 H28 sing N N 57 ALA N CA sing N N 58 ALA N H sing N N 59 ALA N H2 sing N N 60 ALA CA C sing N N 61 ALA CA CB sing N N 62 ALA CA HA sing N N 63 ALA C O doub N N 64 ALA C OXT sing N N 65 ALA CB HB1 sing N N 66 ALA CB HB2 sing N N 67 ALA CB HB3 sing N N 68 ALA OXT HXT sing N N 69 ASN N CA sing N N 70 ASN N H sing N N 71 ASN N H2 sing N N 72 ASN CA C sing N N 73 ASN CA CB sing N N 74 ASN CA HA sing N N 75 ASN C O doub N N 76 ASN C OXT sing N N 77 ASN CB CG sing N N 78 ASN CB HB2 sing N N 79 ASN CB HB3 sing N N 80 ASN CG OD1 doub N N 81 ASN CG ND2 sing N N 82 ASN ND2 HD21 sing N N 83 ASN ND2 HD22 sing N N 84 ASN OXT HXT sing N N 85 ASP N CA sing N N 86 ASP N H sing N N 87 ASP N H2 sing N N 88 ASP CA C sing N N 89 ASP CA CB sing N N 90 ASP CA HA sing N N 91 ASP C O doub N N 92 ASP C OXT sing N N 93 ASP CB CG sing N N 94 ASP CB HB2 sing N N 95 ASP CB HB3 sing N N 96 ASP CG OD1 doub N N 97 ASP CG OD2 sing N N 98 ASP OD2 HD2 sing N N 99 ASP OXT HXT sing N N 100 GLN N CA sing N N 101 GLN N H sing N N 102 GLN N H2 sing N N 103 GLN CA C sing N N 104 GLN CA CB sing N N 105 GLN CA HA sing N N 106 GLN C O doub N N 107 GLN C OXT sing N N 108 GLN CB CG sing N N 109 GLN CB HB2 sing N N 110 GLN CB HB3 sing N N 111 GLN CG CD sing N N 112 GLN CG HG2 sing N N 113 GLN CG HG3 sing N N 114 GLN CD OE1 doub N N 115 GLN CD NE2 sing N N 116 GLN NE2 HE21 sing N N 117 GLN NE2 HE22 sing N N 118 GLN OXT HXT sing N N 119 GLU N CA sing N N 120 GLU N H sing N N 121 GLU N H2 sing N N 122 GLU CA C sing N N 123 GLU CA CB sing N N 124 GLU CA HA sing N N 125 GLU C O doub N N 126 GLU C OXT sing N N 127 GLU CB CG sing N N 128 GLU CB HB2 sing N N 129 GLU CB HB3 sing N N 130 GLU CG CD sing N N 131 GLU CG HG2 sing N N 132 GLU CG HG3 sing N N 133 GLU CD OE1 doub N N 134 GLU CD OE2 sing N N 135 GLU OE2 HE2 sing N N 136 GLU OXT HXT sing N N 137 GLY N CA sing N N 138 GLY N H sing N N 139 GLY N H2 sing N N 140 GLY CA C sing N N 141 GLY CA HA2 sing N N 142 GLY CA HA3 sing N N 143 GLY C O doub N N 144 GLY C OXT sing N N 145 GLY OXT HXT sing N N 146 HIS N CA sing N N 147 HIS N H sing N N 148 HIS N H2 sing N N 149 HIS CA C sing N N 150 HIS CA CB sing N N 151 HIS CA HA sing N N 152 HIS C O doub N N 153 HIS C OXT sing N N 154 HIS CB CG sing N N 155 HIS CB HB2 sing N N 156 HIS CB HB3 sing N N 157 HIS CG ND1 sing Y N 158 HIS CG CD2 doub Y N 159 HIS ND1 CE1 doub Y N 160 HIS ND1 HD1 sing N N 161 HIS CD2 NE2 sing Y N 162 HIS CD2 HD2 sing N N 163 HIS CE1 NE2 sing Y N 164 HIS CE1 HE1 sing N N 165 HIS NE2 HE2 sing N N 166 HIS OXT HXT sing N N 167 ILE N CA sing N N 168 ILE N H sing N N 169 ILE N H2 sing N N 170 ILE CA C sing N N 171 ILE CA CB sing N N 172 ILE CA HA sing N N 173 ILE C O doub N N 174 ILE C OXT sing N N 175 ILE CB CG1 sing N N 176 ILE CB CG2 sing N N 177 ILE CB HB sing N N 178 ILE CG1 CD1 sing N N 179 ILE CG1 HG12 sing N N 180 ILE CG1 HG13 sing N N 181 ILE CG2 HG21 sing N N 182 ILE CG2 HG22 sing N N 183 ILE CG2 HG23 sing N N 184 ILE CD1 HD11 sing N N 185 ILE CD1 HD12 sing N N 186 ILE CD1 HD13 sing N N 187 ILE OXT HXT sing N N 188 LEU N CA sing N N 189 LEU N H sing N N 190 LEU N H2 sing N N 191 LEU CA C sing N N 192 LEU CA CB sing N N 193 LEU CA HA sing N N 194 LEU C O doub N N 195 LEU C OXT sing N N 196 LEU CB CG sing N N 197 LEU CB HB2 sing N N 198 LEU CB HB3 sing N N 199 LEU CG CD1 sing N N 200 LEU CG CD2 sing N N 201 LEU CG HG sing N N 202 LEU CD1 HD11 sing N N 203 LEU CD1 HD12 sing N N 204 LEU CD1 HD13 sing N N 205 LEU CD2 HD21 sing N N 206 LEU CD2 HD22 sing N N 207 LEU CD2 HD23 sing N N 208 LEU OXT HXT sing N N 209 LYS N CA sing N N 210 LYS N H sing N N 211 LYS N H2 sing N N 212 LYS CA C sing N N 213 LYS CA CB sing N N 214 LYS CA HA sing N N 215 LYS C O doub N N 216 LYS C OXT sing N N 217 LYS CB CG sing N N 218 LYS CB HB2 sing N N 219 LYS CB HB3 sing N N 220 LYS CG CD sing N N 221 LYS CG HG2 sing N N 222 LYS CG HG3 sing N N 223 LYS CD CE sing N N 224 LYS CD HD2 sing N N 225 LYS CD HD3 sing N N 226 LYS CE NZ sing N N 227 LYS CE HE2 sing N N 228 LYS CE HE3 sing N N 229 LYS NZ HZ1 sing N N 230 LYS NZ HZ2 sing N N 231 LYS NZ HZ3 sing N N 232 LYS OXT HXT sing N N 233 MET N CA sing N N 234 MET N H sing N N 235 MET N H2 sing N N 236 MET CA C sing N N 237 MET CA CB sing N N 238 MET CA HA sing N N 239 MET C O doub N N 240 MET C OXT sing N N 241 MET CB CG sing N N 242 MET CB HB2 sing N N 243 MET CB HB3 sing N N 244 MET CG SD sing N N 245 MET CG HG2 sing N N 246 MET CG HG3 sing N N 247 MET SD CE sing N N 248 MET CE HE1 sing N N 249 MET CE HE2 sing N N 250 MET CE HE3 sing N N 251 MET OXT HXT sing N N 252 PHE N CA sing N N 253 PHE N H sing N N 254 PHE N H2 sing N N 255 PHE CA C sing N N 256 PHE CA CB sing N N 257 PHE CA HA sing N N 258 PHE C O doub N N 259 PHE C OXT sing N N 260 PHE CB CG sing N N 261 PHE CB HB2 sing N N 262 PHE CB HB3 sing N N 263 PHE CG CD1 doub Y N 264 PHE CG CD2 sing Y N 265 PHE CD1 CE1 sing Y N 266 PHE CD1 HD1 sing N N 267 PHE CD2 CE2 doub Y N 268 PHE CD2 HD2 sing N N 269 PHE CE1 CZ doub Y N 270 PHE CE1 HE1 sing N N 271 PHE CE2 CZ sing Y N 272 PHE CE2 HE2 sing N N 273 PHE CZ HZ sing N N 274 PHE OXT HXT sing N N 275 SER N CA sing N N 276 SER N H sing N N 277 SER N H2 sing N N 278 SER CA C sing N N 279 SER CA CB sing N N 280 SER CA HA sing N N 281 SER C O doub N N 282 SER C OXT sing N N 283 SER CB OG sing N N 284 SER CB HB2 sing N N 285 SER CB HB3 sing N N 286 SER OG HG sing N N 287 SER OXT HXT sing N N 288 TYR N CA sing N N 289 TYR N H sing N N 290 TYR N H2 sing N N 291 TYR CA C sing N N 292 TYR CA CB sing N N 293 TYR CA HA sing N N 294 TYR C O doub N N 295 TYR C OXT sing N N 296 TYR CB CG sing N N 297 TYR CB HB2 sing N N 298 TYR CB HB3 sing N N 299 TYR CG CD1 doub Y N 300 TYR CG CD2 sing Y N 301 TYR CD1 CE1 sing Y N 302 TYR CD1 HD1 sing N N 303 TYR CD2 CE2 doub Y N 304 TYR CD2 HD2 sing N N 305 TYR CE1 CZ doub Y N 306 TYR CE1 HE1 sing N N 307 TYR CE2 CZ sing Y N 308 TYR CE2 HE2 sing N N 309 TYR CZ OH sing N N 310 TYR OH HH sing N N 311 TYR OXT HXT sing N N 312 VAL N CA sing N N 313 VAL N H sing N N 314 VAL N H2 sing N N 315 VAL CA C sing N N 316 VAL CA CB sing N N 317 VAL CA HA sing N N 318 VAL C O doub N N 319 VAL C OXT sing N N 320 VAL CB CG1 sing N N 321 VAL CB CG2 sing N N 322 VAL CB HB sing N N 323 VAL CG1 HG11 sing N N 324 VAL CG1 HG12 sing N N 325 VAL CG1 HG13 sing N N 326 VAL CG2 HG21 sing N N 327 VAL CG2 HG22 sing N N 328 VAL CG2 HG23 sing N N 329 VAL OXT HXT sing N N 330 # _em_admin.current_status REL _em_admin.deposition_date 2025-07-18 _em_admin.deposition_site PDBJ _em_admin.entry_id 9VXE _em_admin.last_update 2026-07-22 _em_admin.map_release_date 2026-07-22 _em_admin.title 'The cryo-EM structure of NapIM_type1 amyloid beta 42 fibril.' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 178.5 _em_helical_entity.axial_rise_per_subunit 2.40 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOCONTINUUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9VXE _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #