HEADER METAL BINDING PROTEIN 20-JUL-25 9VY7 TITLE STRUCTURE OF MIF BINDING WITH LANTHANUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPEPTIDE, PEPSY AMD PEPTIDASE M4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS KT; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 ATCC: 51484; SOURCE 5 GENE: MFLA_0908, MFLA_1052; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS RARE EARTH, METALLOPROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.X.DU,L.LIU REVDAT 1 22-JUL-26 9VY7 0 JRNL AUTH Y.X.DU,Z.Q.LI,L.LIU JRNL TITL ADJACENT RARE EARTH SEPARATION BY A PROTEIN ATOMIC RULER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 37494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.121 REMARK 3 FREE R VALUE : 0.129 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.0600 - 2.9400 1.00 3107 160 0.1392 0.1459 REMARK 3 2 2.9400 - 2.3300 1.00 3015 204 0.1259 0.1426 REMARK 3 3 2.3300 - 2.0400 1.00 3033 141 0.1094 0.1099 REMARK 3 4 2.0400 - 1.8500 1.00 3012 161 0.1053 0.1047 REMARK 3 5 1.8500 - 1.7200 1.00 3004 179 0.1065 0.1105 REMARK 3 6 1.7200 - 1.6200 1.00 3027 135 0.1067 0.1399 REMARK 3 7 1.6200 - 1.5400 1.00 3028 138 0.1042 0.1180 REMARK 3 8 1.5400 - 1.4700 1.00 2995 162 0.1134 0.1275 REMARK 3 9 1.4700 - 1.4100 1.00 2998 157 0.1138 0.1137 REMARK 3 10 1.4100 - 1.3600 0.92 2760 138 0.1237 0.1174 REMARK 3 11 1.3600 - 1.3200 0.76 2277 135 0.1293 0.1513 REMARK 3 12 1.3200 - 1.2800 0.62 1837 93 0.1459 0.1346 REMARK 3 13 1.2800 - 1.2500 0.50 1516 82 0.1758 0.1865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.064 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1199 REMARK 3 ANGLE : 1.384 1618 REMARK 3 CHIRALITY : 0.100 178 REMARK 3 PLANARITY : 0.012 213 REMARK 3 DIHEDRAL : 15.121 446 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0398 -6.8370 6.8347 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.0694 REMARK 3 T33: 0.0625 T12: -0.0003 REMARK 3 T13: 0.0300 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.0590 L22: 2.2050 REMARK 3 L33: 2.0212 L12: -0.0474 REMARK 3 L13: 0.3450 L23: 0.2521 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.0387 S13: -0.2014 REMARK 3 S21: 0.0180 S22: -0.0235 S23: 0.0009 REMARK 3 S31: 0.2407 S32: -0.0321 S33: 0.0417 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7383 -2.1328 12.9776 REMARK 3 T TENSOR REMARK 3 T11: 0.0754 T22: 0.0850 REMARK 3 T33: 0.0711 T12: -0.0142 REMARK 3 T13: 0.0143 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5422 L22: 4.0385 REMARK 3 L33: 1.7037 L12: -0.6131 REMARK 3 L13: -0.0659 L23: 1.0065 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: 0.0452 S13: -0.1651 REMARK 3 S21: 0.1371 S22: -0.0632 S23: 0.1700 REMARK 3 S31: 0.1457 S32: -0.2547 S33: 0.0332 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4445 9.9789 21.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.0608 T22: 0.0422 REMARK 3 T33: 0.0812 T12: -0.0121 REMARK 3 T13: -0.0067 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.0259 L22: 1.2691 REMARK 3 L33: 1.9055 L12: -0.1251 REMARK 3 L13: -0.6840 L23: 0.2804 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.0825 S13: 0.1565 REMARK 3 S21: 0.0334 S22: -0.0149 S23: -0.1557 REMARK 3 S31: -0.1002 S32: 0.1481 S33: -0.0120 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2613 3.5608 19.3533 REMARK 3 T TENSOR REMARK 3 T11: 0.0574 T22: 0.0260 REMARK 3 T33: 0.0524 T12: 0.0115 REMARK 3 T13: -0.0213 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 4.9023 L22: 1.9269 REMARK 3 L33: 3.4198 L12: 0.4784 REMARK 3 L13: -1.7007 L23: 0.0785 REMARK 3 S TENSOR REMARK 3 S11: -0.0779 S12: -0.0102 S13: -0.1354 REMARK 3 S21: -0.0010 S22: 0.0096 S23: -0.1447 REMARK 3 S31: 0.1416 S32: 0.0981 S33: 0.0564 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9555 1.7309 19.7699 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0638 REMARK 3 T33: 0.1057 T12: 0.0244 REMARK 3 T13: -0.0228 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.9529 L22: 1.7005 REMARK 3 L33: 2.1913 L12: 0.1624 REMARK 3 L13: -0.6949 L23: 0.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0449 S13: -0.0145 REMARK 3 S21: 0.0547 S22: 0.0194 S23: -0.2469 REMARK 3 S31: 0.1836 S32: 0.2037 S33: 0.0153 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5974 -0.9337 10.3962 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.0427 REMARK 3 T33: 0.0753 T12: 0.0058 REMARK 3 T13: 0.0077 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.2402 L22: 0.6915 REMARK 3 L33: 3.4643 L12: -0.2475 REMARK 3 L13: 0.3536 L23: 1.3941 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.0798 S13: 0.0354 REMARK 3 S21: -0.0176 S22: 0.0240 S23: -0.0904 REMARK 3 S31: 0.0428 S32: 0.1763 S33: 0.0154 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9VY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 24-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300061616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979176 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 52.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.44800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.37050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.44800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.37050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 515 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 66 CD GLU A 66 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 50 -4.81 80.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 537 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA A 205 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 GLU A 104 OE1 75.4 REMARK 620 3 GLU A 104 OE2 123.7 48.4 REMARK 620 4 ASP A 120 OD2 79.4 67.1 76.1 REMARK 620 5 GLU A 128 OE2 135.8 124.6 84.5 75.5 REMARK 620 6 GLU A 146 OE1 67.9 135.0 151.1 81.1 72.7 REMARK 620 7 GLU A 146 OE2 91.6 156.9 141.8 129.9 77.9 50.5 REMARK 620 8 GLN A 149 OE1 74.6 76.8 93.4 139.6 143.1 115.5 81.5 REMARK 620 9 HOH A 318 O 146.1 108.9 70.6 134.0 70.7 116.1 71.7 73.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA A 203 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 42 OE2 REMARK 620 2 ASP A 54 OD2 73.6 REMARK 620 3 GLU A 106 OE1 145.9 136.7 REMARK 620 4 GLU A 108 OE2 137.8 73.2 75.4 REMARK 620 5 GLU A 118 OE1 90.0 122.5 84.1 86.7 REMARK 620 6 GLU A 118 OE2 75.8 73.7 121.8 70.5 48.8 REMARK 620 7 HOH A 311 O 73.7 144.0 72.6 142.9 71.8 111.8 REMARK 620 8 HOH A 465 O 80.0 79.2 90.0 117.8 152.5 147.8 80.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA A 204 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD2 REMARK 620 2 GLU A 70 OE1 79.2 REMARK 620 3 GLU A 70 OE2 125.9 49.9 REMARK 620 4 GLU A 106 OE2 80.6 81.2 75.5 REMARK 620 5 GLU A 153 OE1 88.3 150.7 145.0 123.0 REMARK 620 6 GLU A 153 OE2 73.7 145.8 139.8 74.2 49.1 REMARK 620 7 HOH A 314 O 72.8 73.0 103.0 145.7 78.1 116.9 REMARK 620 8 HOH A 447 O 142.4 125.2 76.1 76.4 80.0 71.6 137.2 REMARK 620 9 HOH A 459 O 140.6 97.4 72.3 138.1 75.7 116.7 68.8 70.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA A 202 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD2 REMARK 620 2 GLU A 68 OE1 70.4 REMARK 620 3 GLU A 68 OE2 113.1 47.0 REMARK 620 4 GLU A 108 OE1 74.7 74.4 69.0 REMARK 620 5 GLU A 118 OE2 73.6 137.9 139.8 75.6 REMARK 620 6 GLU A 132 OE2 151.1 124.7 77.8 85.6 81.2 REMARK 620 7 HOH A 336 O 67.4 76.6 110.1 138.1 108.8 136.1 REMARK 620 8 HOH A 364 O 104.8 141.4 137.3 142.9 69.1 78.5 66.9 REMARK 620 9 HOH A 389 O 134.1 85.4 68.8 136.1 136.3 74.5 69.4 70.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA A 201 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 66 OE2 REMARK 620 2 GLU A 68 OE2 70.1 REMARK 620 3 GLU A 110 OE1 70.0 78.4 REMARK 620 4 GLU A 110 OE2 113.0 74.9 47.8 REMARK 620 5 GLU A 132 OE1 150.8 88.4 126.1 78.3 REMARK 620 6 GLU A 142 OE2 103.6 136.4 141.9 139.5 78.1 REMARK 620 7 HOH A 389 O 75.5 62.3 134.5 130.6 77.1 74.2 REMARK 620 8 HOH A 455 O 68.7 136.7 75.6 109.9 134.9 67.5 117.9 REMARK 620 9 HOH A 457 O 129.7 144.2 82.2 69.8 79.2 73.7 143.3 64.1 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 9VY7 A 2 153 UNP Q1H2G7 Q1H2G7_METFK 24 175 SEQADV 9VY7 MET A 1 UNP Q1H2G7 INITIATING METHIONINE SEQRES 1 A 153 MET ASP HIS HIS PHE PRO LYS GLY LYS VAL SER LEU GLU SEQRES 2 A 153 THR CYS LEU GLU ALA ALA LEU LYS ALA LYS PRO GLY THR SEQRES 3 A 153 VAL VAL LYS VAL GLU TYR LYS LEU GLU GLY GLU THR PRO SEQRES 4 A 153 VAL TYR GLU PHE ASP ILE GLU SER SER ASP SER THR ALA SEQRES 5 A 153 TRP ASP VAL GLU CYS ASP ALA ASN THR GLY LYS ILE VAL SEQRES 6 A 153 GLU ILE GLU GLN GLU VAL ASP SER ALA ASP HIS PRO LEU SEQRES 7 A 153 PHE LYS ALA LYS GLN LYS VAL SER GLU ALA GLU ALA ARG SEQRES 8 A 153 LYS THR ALA LEU ALA ALA HIS PRO GLY GLU ILE VAL GLU SEQRES 9 A 153 VAL GLU TYR GLU ILE GLU GLU ASN GLY ALA ALA SER TYR SEQRES 10 A 153 GLU PHE ASP ILE LYS THR LYS ASP GLY LYS GLU PHE LYS SEQRES 11 A 153 VAL GLU VAL ASP ALA SER THR GLY LYS ILE VAL GLU ALA SEQRES 12 A 153 ASN GLN GLU PHE TYR GLN ILE GLY LYS GLU HET LA A 201 1 HET LA A 202 1 HET LA A 203 1 HET LA A 204 1 HET LA A 205 1 HETNAM LA LANTHANUM (III) ION FORMUL 2 LA 5(LA 3+) FORMUL 7 HOH *237(H2 O) HELIX 1 AA1 SER A 11 LYS A 23 1 13 HELIX 2 AA2 HIS A 76 ALA A 81 1 6 HELIX 3 AA3 SER A 86 HIS A 98 1 13 SHEET 1 AA1 9 THR A 26 GLU A 35 0 SHEET 2 AA1 9 THR A 38 GLU A 46 -1 O GLU A 42 N GLU A 31 SHEET 3 AA1 9 ALA A 52 ASP A 58 -1 O VAL A 55 N PHE A 43 SHEET 4 AA1 9 ILE A 64 VAL A 71 -1 O GLU A 68 N ASP A 54 SHEET 5 AA1 9 GLY A 100 ILE A 109 -1 O ILE A 109 N GLN A 69 SHEET 6 AA1 9 ALA A 115 THR A 123 -1 O GLU A 118 N GLU A 106 SHEET 7 AA1 9 GLU A 128 ASP A 134 -1 O VAL A 131 N PHE A 119 SHEET 8 AA1 9 ILE A 140 ILE A 150 -1 O ASN A 144 N LYS A 130 SHEET 9 AA1 9 THR A 26 GLU A 35 -1 N TYR A 32 O PHE A 147 SSBOND 1 CYS A 15 CYS A 57 1555 1555 2.15 LINK OE2 GLU A 31 LA LA A 205 1555 1555 2.52 LINK OE2 GLU A 42 LA LA A 203 1555 1555 2.62 LINK OD2 ASP A 44 LA LA A 204 1555 1555 2.53 LINK OD2 ASP A 54 LA LA A 202 1555 1555 2.70 LINK OD2 ASP A 54 LA LA A 203 1555 1555 2.53 LINK OE2 GLU A 66 LA LA A 201 1555 1555 2.47 LINK OE2 GLU A 68 LA LA A 201 1555 1555 2.68 LINK OE1 GLU A 68 LA LA A 202 1555 1555 2.65 LINK OE2 GLU A 68 LA LA A 202 1555 1555 2.82 LINK OE1 GLU A 70 LA LA A 204 1555 1555 2.70 LINK OE2 GLU A 70 LA LA A 204 1555 1555 2.72 LINK OE1 GLU A 104 LA LA A 205 1555 1555 2.76 LINK OE2 GLU A 104 LA LA A 205 1555 1555 2.72 LINK OE1 GLU A 106 LA LA A 203 1555 1555 2.56 LINK OE2 GLU A 106 LA LA A 204 1555 1555 2.61 LINK OE1 GLU A 108 LA LA A 202 1555 1555 2.56 LINK OE2 GLU A 108 LA LA A 203 1555 1555 2.54 LINK OE1 GLU A 110 LA LA A 201 1555 1555 2.73 LINK OE2 GLU A 110 LA LA A 201 1555 1555 2.69 LINK OE2 GLU A 118 LA LA A 202 1555 1555 2.53 LINK OE1 GLU A 118 LA LA A 203 1555 1555 2.55 LINK OE2 GLU A 118 LA LA A 203 1555 1555 2.70 LINK OD2 ASP A 120 LA LA A 205 1555 1555 2.46 LINK OE2 GLU A 128 LA LA A 205 1555 1555 2.50 LINK OE1 GLU A 132 LA LA A 201 1555 1555 2.61 LINK OE2 GLU A 132 LA LA A 202 1555 1555 2.44 LINK OE2 GLU A 142 LA LA A 201 1555 1555 2.74 LINK OE1 GLU A 146 LA LA A 205 1555 1555 2.62 LINK OE2 GLU A 146 LA LA A 205 1555 1555 2.56 LINK OE1 GLN A 149 LA LA A 205 1555 1555 2.64 LINK OE1 GLU A 153 LA LA A 204 1555 1555 2.72 LINK OE2 GLU A 153 LA LA A 204 1555 1555 2.58 LINK LA LA A 201 O HOH A 389 1555 1555 2.90 LINK LA LA A 201 O HOH A 455 1555 1555 2.94 LINK LA LA A 201 O HOH A 457 1555 1555 2.71 LINK LA LA A 202 O HOH A 336 1555 1555 2.22 LINK LA LA A 202 O HOH A 364 1555 1555 2.65 LINK LA LA A 202 O HOH A 389 1555 1555 2.22 LINK LA LA A 203 O HOH A 311 1555 1555 2.57 LINK LA LA A 203 O HOH A 465 1555 1555 2.39 LINK LA LA A 204 O HOH A 314 1555 1555 2.60 LINK LA LA A 204 O HOH A 447 1555 1555 2.60 LINK LA LA A 204 O HOH A 459 1555 1555 2.52 LINK LA LA A 205 O HOH A 318 1555 1555 2.60 CRYST1 70.896 40.741 56.416 90.00 112.52 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014105 0.000000 0.005848 0.00000 SCALE2 0.000000 0.024545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019189 0.00000 CONECT 199 837 CONECT 444 2316 CONECT 623 2314 CONECT 657 2315 CONECT 796 2313 2314 CONECT 837 199 CONECT 964 2312 CONECT 997 2313 CONECT 998 2312 2313 CONECT 1029 2315 CONECT 1030 2315 CONECT 1542 2316 CONECT 1543 2316 CONECT 1573 2314 CONECT 1574 2315 CONECT 1609 2313 CONECT 1610 2314 CONECT 1643 2312 CONECT 1644 2312 CONECT 1746 2314 CONECT 1747 2313 2314 CONECT 1781 2316 CONECT 1912 2316 CONECT 1984 2312 CONECT 1985 2313 CONECT 2127 2312 CONECT 2182 2316 CONECT 2183 2316 CONECT 2238 2316 CONECT 2303 2315 CONECT 2304 2315 CONECT 2312 964 998 1643 1644 CONECT 2312 1984 2127 2405 2471 CONECT 2312 2473 CONECT 2313 796 997 998 1609 CONECT 2313 1747 1985 2352 2380 CONECT 2313 2405 CONECT 2314 623 796 1573 1610 CONECT 2314 1746 1747 2327 2481 CONECT 2315 657 1029 1030 1574 CONECT 2315 2303 2304 2330 2463 CONECT 2315 2475 CONECT 2316 444 1542 1543 1781 CONECT 2316 1912 2182 2183 2238 CONECT 2316 2334 CONECT 2327 2314 CONECT 2330 2315 CONECT 2334 2316 CONECT 2352 2313 CONECT 2380 2313 CONECT 2405 2312 2313 CONECT 2463 2315 CONECT 2471 2312 CONECT 2473 2312 CONECT 2475 2315 CONECT 2481 2314 MASTER 438 0 5 3 9 0 0 6 1420 1 56 12 END