HEADER LIPID BINDING PROTEIN 28-JUL-25 9W2N TITLE CRYSTAL STRUCTURE OF THE MUTANT LC3B IN COMPLEX WITH P62 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- COMPND 5 LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MICROTUBULE- COMPND 6 ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B,MAP1A/MAP1B LC3 B, COMPND 7 MAP1A/MAP1B LIGHT CHAIN 3 B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SEQUESTOSOME-1; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: STONE14,UBIQUITIN-BINDING PROTEIN P62; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MAP1LC3B, MAP1ALC3, MAP1LC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A+; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090 KEYWDS P62-LIR BOUND, AUTOPHAGY, ENGINEERED LC3B, ATG8-ORTHOLOG, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MATHUR,R.K.PAL,B.K.BISWAL,L.THUKRAL REVDAT 1 29-JUL-26 9W2N 0 JRNL AUTH D.GAHLOT,J.CASTIN,S.MATHUR,D.DAS,A.KUMAR,A.ARUN,C.GAIN, JRNL AUTH 2 M.SHARMA,R.K.PAL,N.JAIN,B.K.BISWAL,R.SINGH,L.THUKRAL JRNL TITL A NOVEL LIPID-TRIGGERED ALLOSTERIC SITE MODULATES LC3-LIR JRNL TITL 2 RECEPTOR BINDING ACTIVITY JRNL REF BIORXIV 2026 JRNL REFN ISSN 2692-8205 JRNL DOI 10.64898/2026.03.10.710726 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 14126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 930 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1140 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1080 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1562 ; 1.824 ; 1.850 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2502 ; 0.690 ; 1.784 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 5.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ; 6.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;13.122 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1383 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 283 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 540 ; 2.203 ; 1.985 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 540 ; 2.203 ; 1.986 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 679 ; 3.516 ; 3.538 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 680 ; 3.514 ; 3.539 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 600 ; 3.222 ; 2.399 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 597 ; 3.221 ; 2.394 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 859 ; 5.170 ; 4.174 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1358 ; 7.391 ;23.260 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1332 ; 7.297 ;21.320 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): -27.1362 -5.5060 -1.5822 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0032 REMARK 3 T33: 0.1322 T12: -0.0007 REMARK 3 T13: -0.0109 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.4866 L22: 0.5437 REMARK 3 L33: 0.3971 L12: 0.0186 REMARK 3 L13: 0.0040 L23: -0.0230 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0156 S13: 0.0018 REMARK 3 S21: -0.0333 S22: 0.0287 S23: 0.0102 REMARK 3 S31: 0.0332 S32: -0.0080 S33: -0.0272 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 338 C 408 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0792 -16.5554 0.1477 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0354 REMARK 3 T33: 0.1870 T12: 0.0460 REMARK 3 T13: -0.0017 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.1952 L22: 4.4859 REMARK 3 L33: 2.4380 L12: -0.9204 REMARK 3 L13: 0.0458 L23: 0.3528 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: -0.0047 S13: -0.0596 REMARK 3 S21: -0.1668 S22: 0.0695 S23: 0.2186 REMARK 3 S31: 0.3911 S32: 0.2814 S33: -0.1086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9W2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300062024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZJD REMARK 200 REMARK 200 REMARK: HEXAGONAL SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE, 200 MM REMARK 280 POTASSIUM SODIUM TARTARATE TETRAHYDRATE, 100 MM SODIUM CITRATE REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.27067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.63533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.45300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.81767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.08833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 MET A 123 REMARK 465 ALA A 124 REMARK 465 VAL A 125 REMARK 465 SER C 334 REMARK 465 GLY C 335 REMARK 465 GLY C 336 REMARK 465 ASP C 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 ILE A 23 CD1 REMARK 470 LYS A 42 CD CE NZ REMARK 470 ASP C 338 CG OD1 OD2 REMARK 470 ASP C 339 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 339 86.87 66.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 9W2N A 1 125 UNP Q9CQV6 MLP3B_MOUSE 1 125 DBREF 9W2N C 334 344 UNP Q64337 SQSTM_MOUSE 334 344 SEQADV 9W2N HIS A -5 UNP Q9CQV6 EXPRESSION TAG SEQADV 9W2N HIS A -4 UNP Q9CQV6 EXPRESSION TAG SEQADV 9W2N HIS A -3 UNP Q9CQV6 EXPRESSION TAG SEQADV 9W2N HIS A -2 UNP Q9CQV6 EXPRESSION TAG SEQADV 9W2N HIS A -1 UNP Q9CQV6 EXPRESSION TAG SEQADV 9W2N HIS A 0 UNP Q9CQV6 EXPRESSION TAG SEQADV 9W2N LYS A 64 UNP Q9CQV6 ILE 64 ENGINEERED MUTATION SEQADV 9W2N ASP A 89 UNP Q9CQV6 VAL 89 ENGINEERED MUTATION SEQADV 9W2N PHE A 91 UNP Q9CQV6 VAL 91 ENGINEERED MUTATION SEQRES 1 A 131 HIS HIS HIS HIS HIS HIS MET PRO SER GLU LYS THR PHE SEQRES 2 A 131 LYS GLN ARG ARG SER PHE GLU GLN ARG VAL GLU ASP VAL SEQRES 3 A 131 ARG LEU ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL SEQRES 4 A 131 ILE ILE GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL SEQRES 5 A 131 LEU ASP LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN SEQRES 6 A 131 MET SER GLU LEU LYS LYS ILE ILE ARG ARG ARG LEU GLN SEQRES 7 A 131 LEU ASN ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY SEQRES 8 A 131 HIS SER MET ASP SER PHE SER THR PRO ILE SER GLU VAL SEQRES 9 A 131 TYR GLU SER GLU ARG ASP GLU ASP GLY PHE LEU TYR MET SEQRES 10 A 131 VAL TYR ALA SER GLN GLU THR PHE GLY THR ALA MET ALA SEQRES 11 A 131 VAL SEQRES 1 C 11 SER GLY GLY ASP ASP ASP TRP THR HIS LEU SER HET SO4 A 201 5 HET K A 202 1 HET CL A 203 1 HET EDO A 204 4 HET EDO C 401 4 HETNAM SO4 SULFATE ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 O4 S 2- FORMUL 4 K K 1+ FORMUL 5 CL CL 1- FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 HOH *87(H2 O) HELIX 1 AA1 THR A 6 ARG A 11 1 6 HELIX 2 AA2 SER A 12 HIS A 27 1 16 HELIX 3 AA3 ASN A 59 LEU A 71 1 13 HELIX 4 AA4 PRO A 94 ARG A 103 1 10 HELIX 5 AA5 GLN A 116 GLY A 120 5 5 SHEET 1 AA1 5 PHE A 80 VAL A 83 0 SHEET 2 AA1 5 LEU A 109 ALA A 114 -1 O ALA A 114 N PHE A 80 SHEET 3 AA1 5 LYS A 30 ARG A 37 1 N ILE A 34 O MET A 111 SHEET 4 AA1 5 LYS A 51 PRO A 55 -1 O PHE A 52 N VAL A 33 SHEET 5 AA1 5 THR C 341 HIS C 342 1 O THR C 341 N LYS A 51 LINK K K A 202 O HOH C 504 1555 1555 2.85 CRYST1 73.991 73.991 40.906 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013515 0.007803 0.000000 0.00000 SCALE2 0.000000 0.015606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024446 0.00000 CONECT 1092 1093 1094 1095 1096 CONECT 1093 1092 CONECT 1094 1092 CONECT 1095 1092 CONECT 1096 1092 CONECT 1097 1191 CONECT 1099 1100 1101 CONECT 1100 1099 CONECT 1101 1099 1102 CONECT 1102 1101 CONECT 1103 1104 1105 CONECT 1104 1103 CONECT 1105 1103 1106 CONECT 1106 1105 CONECT 1191 1097 MASTER 336 0 5 5 5 0 0 6 1142 2 15 12 END