data_9WFA # _entry.id 9WFA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9WFA pdb_00009wfa 10.2210/pdb9wfa/pdb WWPDB D_1300062777 ? ? EMDB EMD-65924 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-03-18 ? 2 'EM metadata' 1 0 2026-03-18 ? 3 FSC 1 0 2026-03-18 ? 4 'Half map' 1 0 2026-03-18 1 5 'Half map' 1 0 2026-03-18 2 6 Image 1 0 2026-03-18 ? 7 Mask 1 0 2026-03-18 1 8 'Primary map' 1 0 2026-03-18 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9WFA _pdbx_database_status.recvd_initial_deposition_date 2025-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of psXR' _pdbx_database_related.db_id EMD-65924 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 nureki@bs.s.u-tokyo.ac.jp Osamu Nureki ? 'principal investigator/group leader' 0000-0003-1813-7008 4 wtrshh9@gmail.com Wataru Shihoya ? 'principal investigator/group leader' 0000-0003-4813-5740 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Murakoshi, S.' 1 0000-0001-7019-9332 'Marin, M.C.' 2 0000-0001-6603-1692 'Tanaka, T.' 3 0000-0001-5728-7573 'Shihoya, W.' 4 0000-0003-4813-5740 'Beja, O.' 5 0000-0001-6629-0192 'Nureki, O.' 6 0000-0003-1813-7008 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 28 _citation.page_last 28 _citation.title 'Light-harvesting by antenna-containing xanthorhodopsin from an Antarctic Pseudanabaenaceae cyanobacterium.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-025-09294-z _citation.pdbx_database_id_PubMed 41318824 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Marin, M.D.C.' 1 0000-0001-6603-1692 primary 'Murakoshi, S.' 2 ? primary 'Rozenberg, A.' 3 0000-0001-9534-2297 primary 'Tanaka, T.' 4 ? primary 'Konno, M.' 5 0000-0002-0605-1816 primary 'Shihoya, W.' 6 ? primary 'Nureki, O.' 7 0000-0003-1813-7008 primary 'Beja, O.' 8 0000-0001-6629-0192 primary 'Inoue, K.' 9 0000-0002-6898-4347 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man psXR 32057.432 1 ? 'N-terminal His6-tag' ? ? 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 non-polymer syn "(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" 568.871 1 ? ? ? ? 4 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSISLITDFALLAQSNLPETVSKVDFLSSGQYNLVYNAFSFAIATMLAAALFFFNVRGQVGQKYQLALIVSALVVSIAGY HYYRIFGSWEAAYSLQNGNYVLTGAPFNDAYRYVDWLLTVPLLLVETVAVLALPGMEARPLLIKLVVAAILMIATGYPGE ISTDLNTRIVWGAVSTVPFIYILYILWIELSKSLLRQPEGVQTLVKNMRLLLLFSWGVYPIAYLLPMLGISGATADVGVQ IGYTIADVLAKPIFGLLVFAIALEKTRVDAGEQPTKESPMTMISSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSISLITDFALLAQSNLPETVSKVDFLSSGQYNLVYNAFSFAIATMLAAALFFFNVRGQVGQKYQLALIVSALVVSIAGY HYYRIFGSWEAAYSLQNGNYVLTGAPFNDAYRYVDWLLTVPLLLVETVAVLALPGMEARPLLIKLVVAAILMIATGYPGE ISTDLNTRIVWGAVSTVPFIYILYILWIELSKSLLRQPEGVQTLVKNMRLLLLFSWGVYPIAYLLPMLGISGATADVGVQ IGYTIADVLAKPIFGLLVFAIALEKTRVDAGEQPTKESPMTMISSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 "(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" LUT 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 ILE n 1 4 SER n 1 5 LEU n 1 6 ILE n 1 7 THR n 1 8 ASP n 1 9 PHE n 1 10 ALA n 1 11 LEU n 1 12 LEU n 1 13 ALA n 1 14 GLN n 1 15 SER n 1 16 ASN n 1 17 LEU n 1 18 PRO n 1 19 GLU n 1 20 THR n 1 21 VAL n 1 22 SER n 1 23 LYS n 1 24 VAL n 1 25 ASP n 1 26 PHE n 1 27 LEU n 1 28 SER n 1 29 SER n 1 30 GLY n 1 31 GLN n 1 32 TYR n 1 33 ASN n 1 34 LEU n 1 35 VAL n 1 36 TYR n 1 37 ASN n 1 38 ALA n 1 39 PHE n 1 40 SER n 1 41 PHE n 1 42 ALA n 1 43 ILE n 1 44 ALA n 1 45 THR n 1 46 MET n 1 47 LEU n 1 48 ALA n 1 49 ALA n 1 50 ALA n 1 51 LEU n 1 52 PHE n 1 53 PHE n 1 54 PHE n 1 55 ASN n 1 56 VAL n 1 57 ARG n 1 58 GLY n 1 59 GLN n 1 60 VAL n 1 61 GLY n 1 62 GLN n 1 63 LYS n 1 64 TYR n 1 65 GLN n 1 66 LEU n 1 67 ALA n 1 68 LEU n 1 69 ILE n 1 70 VAL n 1 71 SER n 1 72 ALA n 1 73 LEU n 1 74 VAL n 1 75 VAL n 1 76 SER n 1 77 ILE n 1 78 ALA n 1 79 GLY n 1 80 TYR n 1 81 HIS n 1 82 TYR n 1 83 TYR n 1 84 ARG n 1 85 ILE n 1 86 PHE n 1 87 GLY n 1 88 SER n 1 89 TRP n 1 90 GLU n 1 91 ALA n 1 92 ALA n 1 93 TYR n 1 94 SER n 1 95 LEU n 1 96 GLN n 1 97 ASN n 1 98 GLY n 1 99 ASN n 1 100 TYR n 1 101 VAL n 1 102 LEU n 1 103 THR n 1 104 GLY n 1 105 ALA n 1 106 PRO n 1 107 PHE n 1 108 ASN n 1 109 ASP n 1 110 ALA n 1 111 TYR n 1 112 ARG n 1 113 TYR n 1 114 VAL n 1 115 ASP n 1 116 TRP n 1 117 LEU n 1 118 LEU n 1 119 THR n 1 120 VAL n 1 121 PRO n 1 122 LEU n 1 123 LEU n 1 124 LEU n 1 125 VAL n 1 126 GLU n 1 127 THR n 1 128 VAL n 1 129 ALA n 1 130 VAL n 1 131 LEU n 1 132 ALA n 1 133 LEU n 1 134 PRO n 1 135 GLY n 1 136 MET n 1 137 GLU n 1 138 ALA n 1 139 ARG n 1 140 PRO n 1 141 LEU n 1 142 LEU n 1 143 ILE n 1 144 LYS n 1 145 LEU n 1 146 VAL n 1 147 VAL n 1 148 ALA n 1 149 ALA n 1 150 ILE n 1 151 LEU n 1 152 MET n 1 153 ILE n 1 154 ALA n 1 155 THR n 1 156 GLY n 1 157 TYR n 1 158 PRO n 1 159 GLY n 1 160 GLU n 1 161 ILE n 1 162 SER n 1 163 THR n 1 164 ASP n 1 165 LEU n 1 166 ASN n 1 167 THR n 1 168 ARG n 1 169 ILE n 1 170 VAL n 1 171 TRP n 1 172 GLY n 1 173 ALA n 1 174 VAL n 1 175 SER n 1 176 THR n 1 177 VAL n 1 178 PRO n 1 179 PHE n 1 180 ILE n 1 181 TYR n 1 182 ILE n 1 183 LEU n 1 184 TYR n 1 185 ILE n 1 186 LEU n 1 187 TRP n 1 188 ILE n 1 189 GLU n 1 190 LEU n 1 191 SER n 1 192 LYS n 1 193 SER n 1 194 LEU n 1 195 LEU n 1 196 ARG n 1 197 GLN n 1 198 PRO n 1 199 GLU n 1 200 GLY n 1 201 VAL n 1 202 GLN n 1 203 THR n 1 204 LEU n 1 205 VAL n 1 206 LYS n 1 207 ASN n 1 208 MET n 1 209 ARG n 1 210 LEU n 1 211 LEU n 1 212 LEU n 1 213 LEU n 1 214 PHE n 1 215 SER n 1 216 TRP n 1 217 GLY n 1 218 VAL n 1 219 TYR n 1 220 PRO n 1 221 ILE n 1 222 ALA n 1 223 TYR n 1 224 LEU n 1 225 LEU n 1 226 PRO n 1 227 MET n 1 228 LEU n 1 229 GLY n 1 230 ILE n 1 231 SER n 1 232 GLY n 1 233 ALA n 1 234 THR n 1 235 ALA n 1 236 ASP n 1 237 VAL n 1 238 GLY n 1 239 VAL n 1 240 GLN n 1 241 ILE n 1 242 GLY n 1 243 TYR n 1 244 THR n 1 245 ILE n 1 246 ALA n 1 247 ASP n 1 248 VAL n 1 249 LEU n 1 250 ALA n 1 251 LYS n 1 252 PRO n 1 253 ILE n 1 254 PHE n 1 255 GLY n 1 256 LEU n 1 257 LEU n 1 258 VAL n 1 259 PHE n 1 260 ALA n 1 261 ILE n 1 262 ALA n 1 263 LEU n 1 264 GLU n 1 265 LYS n 1 266 THR n 1 267 ARG n 1 268 VAL n 1 269 ASP n 1 270 ALA n 1 271 GLY n 1 272 GLU n 1 273 GLN n 1 274 PRO n 1 275 THR n 1 276 LYS n 1 277 GLU n 1 278 SER n 1 279 PRO n 1 280 MET n 1 281 THR n 1 282 MET n 1 283 ILE n 1 284 SER n 1 285 SER n 1 286 HIS n 1 287 HIS n 1 288 HIS n 1 289 HIS n 1 290 HIS n 1 291 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 291 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Gloeobacter violaceus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 33072 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LUT non-polymer . "(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" ;(3R,3'R)-BETA,BETA-CAROTENE-3,3'-DIOL; LUTEIN ; 'C40 H56 O2' 568.871 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 ILE 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 ILE 6 6 ? ? ? A . n A 1 7 THR 7 7 ? ? ? A . n A 1 8 ASP 8 8 ? ? ? A . n A 1 9 PHE 9 9 ? ? ? A . n A 1 10 ALA 10 10 ? ? ? A . n A 1 11 LEU 11 11 ? ? ? A . n A 1 12 LEU 12 12 ? ? ? A . n A 1 13 ALA 13 13 ? ? ? A . n A 1 14 GLN 14 14 ? ? ? A . n A 1 15 SER 15 15 ? ? ? A . n A 1 16 ASN 16 16 ? ? ? A . n A 1 17 LEU 17 17 ? ? ? A . n A 1 18 PRO 18 18 ? ? ? A . n A 1 19 GLU 19 19 ? ? ? A . n A 1 20 THR 20 20 ? ? ? A . n A 1 21 VAL 21 21 ? ? ? A . n A 1 22 SER 22 22 ? ? ? A . n A 1 23 LYS 23 23 ? ? ? A . n A 1 24 VAL 24 24 ? ? ? A . n A 1 25 ASP 25 25 ? ? ? A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 HIS 81 81 81 HIS HIS A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 TRP 116 116 116 TRP TRP A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 MET 136 136 136 MET MET A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ILE 143 143 143 ILE ILE A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 MET 152 152 152 MET MET A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 GLU 160 160 160 GLU GLU A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 THR 163 163 163 THR THR A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 TRP 171 171 171 TRP TRP A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 ILE 180 180 180 ILE ILE A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 TYR 184 184 184 TYR TYR A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 TRP 187 187 187 TRP TRP A . n A 1 188 ILE 188 188 188 ILE ILE A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 GLN 197 197 197 GLN GLN A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 GLN 202 202 202 GLN GLN A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 VAL 205 205 205 VAL VAL A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 ASN 207 207 207 ASN ASN A . n A 1 208 MET 208 208 208 MET MET A . n A 1 209 ARG 209 209 209 ARG ARG A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 PHE 214 214 214 PHE PHE A . n A 1 215 SER 215 215 215 SER SER A . n A 1 216 TRP 216 216 216 TRP TRP A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 TYR 219 219 219 TYR TYR A . n A 1 220 PRO 220 220 220 PRO PRO A . n A 1 221 ILE 221 221 221 ILE ILE A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 LEU 225 225 225 LEU LEU A . n A 1 226 PRO 226 226 226 PRO PRO A . n A 1 227 MET 227 227 227 MET MET A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 THR 234 234 234 THR THR A . n A 1 235 ALA 235 235 235 ALA ALA A . n A 1 236 ASP 236 236 236 ASP ASP A . n A 1 237 VAL 237 237 237 VAL VAL A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 GLN 240 240 240 GLN GLN A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 GLY 242 242 242 GLY GLY A . n A 1 243 TYR 243 243 243 TYR TYR A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 ASP 247 247 247 ASP ASP A . n A 1 248 VAL 248 248 248 VAL VAL A . n A 1 249 LEU 249 249 249 LEU LEU A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 LYS 251 251 251 LYS LYS A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 ILE 253 253 253 ILE ILE A . n A 1 254 PHE 254 254 254 PHE PHE A . n A 1 255 GLY 255 255 255 GLY GLY A . n A 1 256 LEU 256 256 256 LEU LEU A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 VAL 258 258 258 VAL VAL A . n A 1 259 PHE 259 259 259 PHE PHE A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 ALA 262 262 262 ALA ALA A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 GLU 264 264 264 GLU GLU A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 THR 266 266 266 THR THR A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 VAL 268 268 268 VAL VAL A . n A 1 269 ASP 269 269 269 ASP ASP A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 GLY 271 271 ? ? ? A . n A 1 272 GLU 272 272 ? ? ? A . n A 1 273 GLN 273 273 ? ? ? A . n A 1 274 PRO 274 274 ? ? ? A . n A 1 275 THR 275 275 ? ? ? A . n A 1 276 LYS 276 276 ? ? ? A . n A 1 277 GLU 277 277 ? ? ? A . n A 1 278 SER 278 278 ? ? ? A . n A 1 279 PRO 279 279 ? ? ? A . n A 1 280 MET 280 280 ? ? ? A . n A 1 281 THR 281 281 ? ? ? A . n A 1 282 MET 282 282 ? ? ? A . n A 1 283 ILE 283 283 ? ? ? A . n A 1 284 SER 284 284 ? ? ? A . n A 1 285 SER 285 285 ? ? ? A . n A 1 286 HIS 286 286 ? ? ? A . n A 1 287 HIS 287 287 ? ? ? A . n A 1 288 HIS 288 288 ? ? ? A . n A 1 289 HIS 289 289 ? ? ? A . n A 1 290 HIS 290 290 ? ? ? A . n A 1 291 HIS 291 291 ? ? ? A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 LUT ? ? LUT ? ? 'SUBJECT OF INVESTIGATION' ? 2 RET ? ? RET ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 301 301 RET RET A . C 3 LUT 1 302 302 LUT LUT A . D 4 HOH 1 401 2 HOH HOH A . D 4 HOH 2 402 25 HOH HOH A . D 4 HOH 3 403 9 HOH HOH A . D 4 HOH 4 404 19 HOH HOH A . D 4 HOH 5 405 15 HOH HOH A . D 4 HOH 6 406 10 HOH HOH A . D 4 HOH 7 407 14 HOH HOH A . D 4 HOH 8 408 18 HOH HOH A . D 4 HOH 9 409 3 HOH HOH A . D 4 HOH 10 410 6 HOH HOH A . D 4 HOH 11 411 11 HOH HOH A . D 4 HOH 12 412 4 HOH HOH A . D 4 HOH 13 413 7 HOH HOH A . D 4 HOH 14 414 20 HOH HOH A . D 4 HOH 15 415 12 HOH HOH A . D 4 HOH 16 416 8 HOH HOH A . D 4 HOH 17 417 16 HOH HOH A . D 4 HOH 18 418 23 HOH HOH A . D 4 HOH 19 419 1 HOH HOH A . D 4 HOH 20 420 5 HOH HOH A . D 4 HOH 21 421 17 HOH HOH A . D 4 HOH 22 422 24 HOH HOH A . D 4 HOH 23 423 21 HOH HOH A . D 4 HOH 24 424 13 HOH HOH A . D 4 HOH 25 425 22 HOH HOH A . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9WFA _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9WFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9WFA _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9WFA _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.64 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 2019 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.531 ? 2763 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 6.475 ? 313 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.037 ? 324 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 335 ? f_plane_restr ? ? ? # _struct.entry_id 9WFA _struct.title 'Cryo-EM structure of psXR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9WFA _struct_keywords.text 'rhodopsin, inward proton pump, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9WFA _struct_ref.pdbx_db_accession 9WFA _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9WFA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 291 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9WFA _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 291 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 291 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 2 'point symmetry operation' 1_555 x,y,z 0.3090 0.9511 -0.0000 -31.0841 -0.9511 0.3090 0.0000 196.2564 0.0000 -0.0000 1.0000 0.0000 3 'point symmetry operation' 1_555 x,y,z -0.8090 0.5878 0.0000 145.9613 -0.5878 -0.8090 0.0000 286.4659 0.0000 0.0000 1.0000 0.0000 4 'point symmetry operation' ? ? -0.8090 -0.5878 0.0000 286.4657 0.5878 -0.8090 0.0000 145.9622 0.0000 0.0000 1.0000 0.0000 5 'point symmetry operation' ? ? 0.3090 -0.9511 0.0000 196.2572 0.9511 0.3090 -0.0000 -31.0837 -0.0000 0.0000 1.0000 0.0000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 28 ? ARG A 57 ? SER A 28 ARG A 57 1 ? 30 HELX_P HELX_P2 AA2 GLY A 58 ? VAL A 60 ? GLY A 58 VAL A 60 5 ? 3 HELX_P HELX_P3 AA3 GLY A 61 ? LYS A 63 ? GLY A 61 LYS A 63 5 ? 3 HELX_P HELX_P4 AA4 TYR A 64 ? ALA A 92 ? TYR A 64 ALA A 92 1 ? 29 HELX_P HELX_P5 AA5 ASN A 108 ? ALA A 110 ? ASN A 108 ALA A 110 5 ? 3 HELX_P HELX_P6 AA6 TYR A 111 ? VAL A 130 ? TYR A 111 VAL A 130 1 ? 20 HELX_P HELX_P7 AA7 PRO A 134 ? ILE A 161 ? PRO A 134 ILE A 161 1 ? 28 HELX_P HELX_P8 AA8 ASP A 164 ? ILE A 188 ? ASP A 164 ILE A 188 1 ? 25 HELX_P HELX_P9 AA9 ILE A 188 ? LEU A 195 ? ILE A 188 LEU A 195 1 ? 8 HELX_P HELX_P10 AB1 PRO A 198 ? LEU A 225 ? PRO A 198 LEU A 225 1 ? 28 HELX_P HELX_P11 AB2 PRO A 226 ? GLY A 229 ? PRO A 226 GLY A 229 5 ? 4 HELX_P HELX_P12 AB3 GLY A 232 ? LYS A 251 ? GLY A 232 LYS A 251 1 ? 20 HELX_P HELX_P13 AB4 LYS A 251 ? ALA A 270 ? LYS A 251 ALA A 270 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 251 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 251 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.341 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id RET _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 251 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id RET _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 301 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 251 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C15 _pdbx_modification_feature.modified_residue_id_linking_atom NZ _pdbx_modification_feature.modified_residue_id LYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id RET _pdbx_modification_feature.type Retinoylation _pdbx_modification_feature.category Lipid/lipid-like # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 93 ? GLN A 96 ? TYR A 93 GLN A 96 AA1 2 ASN A 99 ? LEU A 102 ? ASN A 99 LEU A 102 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLN _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 96 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLN _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 96 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ASN _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 99 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ASN _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 99 # _pdbx_entry_details.entry_id 9WFA _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 188 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -125.87 _pdbx_validate_torsion.psi -55.43 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9WFA _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9WFA _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.64 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 327293 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Cyanobacterial xanthorhodopsin reconstituted in MSP2N2 nanodiscs with soyPC' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9WFA _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9WFA _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9WFA _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9WFA _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A ILE 3 ? A ILE 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A ILE 6 ? A ILE 6 7 1 Y 1 A THR 7 ? A THR 7 8 1 Y 1 A ASP 8 ? A ASP 8 9 1 Y 1 A PHE 9 ? A PHE 9 10 1 Y 1 A ALA 10 ? A ALA 10 11 1 Y 1 A LEU 11 ? A LEU 11 12 1 Y 1 A LEU 12 ? A LEU 12 13 1 Y 1 A ALA 13 ? A ALA 13 14 1 Y 1 A GLN 14 ? A GLN 14 15 1 Y 1 A SER 15 ? A SER 15 16 1 Y 1 A ASN 16 ? A ASN 16 17 1 Y 1 A LEU 17 ? A LEU 17 18 1 Y 1 A PRO 18 ? A PRO 18 19 1 Y 1 A GLU 19 ? A GLU 19 20 1 Y 1 A THR 20 ? A THR 20 21 1 Y 1 A VAL 21 ? A VAL 21 22 1 Y 1 A SER 22 ? A SER 22 23 1 Y 1 A LYS 23 ? A LYS 23 24 1 Y 1 A VAL 24 ? A VAL 24 25 1 Y 1 A ASP 25 ? A ASP 25 26 1 Y 1 A GLY 271 ? A GLY 271 27 1 Y 1 A GLU 272 ? A GLU 272 28 1 Y 1 A GLN 273 ? A GLN 273 29 1 Y 1 A PRO 274 ? A PRO 274 30 1 Y 1 A THR 275 ? A THR 275 31 1 Y 1 A LYS 276 ? A LYS 276 32 1 Y 1 A GLU 277 ? A GLU 277 33 1 Y 1 A SER 278 ? A SER 278 34 1 Y 1 A PRO 279 ? A PRO 279 35 1 Y 1 A MET 280 ? A MET 280 36 1 Y 1 A THR 281 ? A THR 281 37 1 Y 1 A MET 282 ? A MET 282 38 1 Y 1 A ILE 283 ? A ILE 283 39 1 Y 1 A SER 284 ? A SER 284 40 1 Y 1 A SER 285 ? A SER 285 41 1 Y 1 A HIS 286 ? A HIS 286 42 1 Y 1 A HIS 287 ? A HIS 287 43 1 Y 1 A HIS 288 ? A HIS 288 44 1 Y 1 A HIS 289 ? A HIS 289 45 1 Y 1 A HIS 290 ? A HIS 290 46 1 Y 1 A HIS 291 ? A HIS 291 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LUT C1 C N N 191 LUT C2 C N N 192 LUT C3 C N S 193 LUT C4 C N N 194 LUT C5 C N N 195 LUT C6 C N N 196 LUT C7 C N N 197 LUT C8 C N N 198 LUT C9 C N N 199 LUT C10 C N N 200 LUT C11 C N N 201 LUT C12 C N N 202 LUT C13 C N N 203 LUT C14 C N N 204 LUT C15 C N N 205 LUT C16 C N N 206 LUT C17 C N N 207 LUT C18 C N N 208 LUT C19 C N N 209 LUT C20 C N N 210 LUT O3 O N N 211 LUT C21 C N N 212 LUT C22 C N N 213 LUT C23 C N R 214 LUT C24 C N N 215 LUT C25 C N N 216 LUT C26 C N S 217 LUT C27 C N N 218 LUT C28 C N N 219 LUT C29 C N N 220 LUT C30 C N N 221 LUT C31 C N N 222 LUT C32 C N N 223 LUT C33 C N N 224 LUT C34 C N N 225 LUT C35 C N N 226 LUT C36 C N N 227 LUT C37 C N N 228 LUT C38 C N N 229 LUT C39 C N N 230 LUT C40 C N N 231 LUT O23 O N N 232 LUT H21 H N N 233 LUT H22 H N N 234 LUT H3 H N N 235 LUT H41 H N N 236 LUT H42 H N N 237 LUT H7 H N N 238 LUT H8 H N N 239 LUT H10 H N N 240 LUT H11 H N N 241 LUT H12 H N N 242 LUT H14 H N N 243 LUT H15 H N N 244 LUT H161 H N N 245 LUT H162 H N N 246 LUT H163 H N N 247 LUT H171 H N N 248 LUT H172 H N N 249 LUT H173 H N N 250 LUT H181 H N N 251 LUT H182 H N N 252 LUT H183 H N N 253 LUT H191 H N N 254 LUT H192 H N N 255 LUT H193 H N N 256 LUT H201 H N N 257 LUT H202 H N N 258 LUT H203 H N N 259 LUT HO3 H N N 260 LUT H221 H N N 261 LUT H222 H N N 262 LUT H23 H N N 263 LUT H24 H N N 264 LUT H26 H N N 265 LUT H27 H N N 266 LUT H28 H N N 267 LUT H30 H N N 268 LUT H31 H N N 269 LUT H32 H N N 270 LUT H34 H N N 271 LUT H35 H N N 272 LUT H361 H N N 273 LUT H362 H N N 274 LUT H363 H N N 275 LUT H371 H N N 276 LUT H372 H N N 277 LUT H373 H N N 278 LUT H381 H N N 279 LUT H382 H N N 280 LUT H383 H N N 281 LUT H391 H N N 282 LUT H392 H N N 283 LUT H393 H N N 284 LUT H401 H N N 285 LUT H402 H N N 286 LUT H403 H N N 287 LUT H1 H N N 288 LYS N N N N 289 LYS CA C N S 290 LYS C C N N 291 LYS O O N N 292 LYS CB C N N 293 LYS CG C N N 294 LYS CD C N N 295 LYS CE C N N 296 LYS NZ N N N 297 LYS OXT O N N 298 LYS H H N N 299 LYS H2 H N N 300 LYS HA H N N 301 LYS HB2 H N N 302 LYS HB3 H N N 303 LYS HG2 H N N 304 LYS HG3 H N N 305 LYS HD2 H N N 306 LYS HD3 H N N 307 LYS HE2 H N N 308 LYS HE3 H N N 309 LYS HZ1 H N N 310 LYS HZ2 H N N 311 LYS HZ3 H N N 312 LYS HXT H N N 313 MET N N N N 314 MET CA C N S 315 MET C C N N 316 MET O O N N 317 MET CB C N N 318 MET CG C N N 319 MET SD S N N 320 MET CE C N N 321 MET OXT O N N 322 MET H H N N 323 MET H2 H N N 324 MET HA H N N 325 MET HB2 H N N 326 MET HB3 H N N 327 MET HG2 H N N 328 MET HG3 H N N 329 MET HE1 H N N 330 MET HE2 H N N 331 MET HE3 H N N 332 MET HXT H N N 333 PHE N N N N 334 PHE CA C N S 335 PHE C C N N 336 PHE O O N N 337 PHE CB C N N 338 PHE CG C Y N 339 PHE CD1 C Y N 340 PHE CD2 C Y N 341 PHE CE1 C Y N 342 PHE CE2 C Y N 343 PHE CZ C Y N 344 PHE OXT O N N 345 PHE H H N N 346 PHE H2 H N N 347 PHE HA H N N 348 PHE HB2 H N N 349 PHE HB3 H N N 350 PHE HD1 H N N 351 PHE HD2 H N N 352 PHE HE1 H N N 353 PHE HE2 H N N 354 PHE HZ H N N 355 PHE HXT H N N 356 PRO N N N N 357 PRO CA C N S 358 PRO C C N N 359 PRO O O N N 360 PRO CB C N N 361 PRO CG C N N 362 PRO CD C N N 363 PRO OXT O N N 364 PRO H H N N 365 PRO HA H N N 366 PRO HB2 H N N 367 PRO HB3 H N N 368 PRO HG2 H N N 369 PRO HG3 H N N 370 PRO HD2 H N N 371 PRO HD3 H N N 372 PRO HXT H N N 373 RET C1 C N N 374 RET C2 C N N 375 RET C3 C N N 376 RET C4 C N N 377 RET C5 C N N 378 RET C6 C N N 379 RET C7 C N N 380 RET C8 C N N 381 RET C9 C N N 382 RET C10 C N N 383 RET C11 C N N 384 RET C12 C N N 385 RET C13 C N N 386 RET C14 C N N 387 RET C15 C N N 388 RET O1 O N N 389 RET C16 C N N 390 RET C17 C N N 391 RET C18 C N N 392 RET C19 C N N 393 RET C20 C N N 394 RET H21 H N N 395 RET H22 H N N 396 RET H31 H N N 397 RET H32 H N N 398 RET H41 H N N 399 RET H42 H N N 400 RET H7 H N N 401 RET H8 H N N 402 RET H10 H N N 403 RET H11 H N N 404 RET H12 H N N 405 RET H14 H N N 406 RET H15 H N N 407 RET H161 H N N 408 RET H162 H N N 409 RET H163 H N N 410 RET H171 H N N 411 RET H172 H N N 412 RET H173 H N N 413 RET H181 H N N 414 RET H182 H N N 415 RET H183 H N N 416 RET H191 H N N 417 RET H192 H N N 418 RET H193 H N N 419 RET H201 H N N 420 RET H202 H N N 421 RET H203 H N N 422 SER N N N N 423 SER CA C N S 424 SER C C N N 425 SER O O N N 426 SER CB C N N 427 SER OG O N N 428 SER OXT O N N 429 SER H H N N 430 SER H2 H N N 431 SER HA H N N 432 SER HB2 H N N 433 SER HB3 H N N 434 SER HG H N N 435 SER HXT H N N 436 THR N N N N 437 THR CA C N S 438 THR C C N N 439 THR O O N N 440 THR CB C N R 441 THR OG1 O N N 442 THR CG2 C N N 443 THR OXT O N N 444 THR H H N N 445 THR H2 H N N 446 THR HA H N N 447 THR HB H N N 448 THR HG1 H N N 449 THR HG21 H N N 450 THR HG22 H N N 451 THR HG23 H N N 452 THR HXT H N N 453 TRP N N N N 454 TRP CA C N S 455 TRP C C N N 456 TRP O O N N 457 TRP CB C N N 458 TRP CG C Y N 459 TRP CD1 C Y N 460 TRP CD2 C Y N 461 TRP NE1 N Y N 462 TRP CE2 C Y N 463 TRP CE3 C Y N 464 TRP CZ2 C Y N 465 TRP CZ3 C Y N 466 TRP CH2 C Y N 467 TRP OXT O N N 468 TRP H H N N 469 TRP H2 H N N 470 TRP HA H N N 471 TRP HB2 H N N 472 TRP HB3 H N N 473 TRP HD1 H N N 474 TRP HE1 H N N 475 TRP HE3 H N N 476 TRP HZ2 H N N 477 TRP HZ3 H N N 478 TRP HH2 H N N 479 TRP HXT H N N 480 TYR N N N N 481 TYR CA C N S 482 TYR C C N N 483 TYR O O N N 484 TYR CB C N N 485 TYR CG C Y N 486 TYR CD1 C Y N 487 TYR CD2 C Y N 488 TYR CE1 C Y N 489 TYR CE2 C Y N 490 TYR CZ C Y N 491 TYR OH O N N 492 TYR OXT O N N 493 TYR H H N N 494 TYR H2 H N N 495 TYR HA H N N 496 TYR HB2 H N N 497 TYR HB3 H N N 498 TYR HD1 H N N 499 TYR HD2 H N N 500 TYR HE1 H N N 501 TYR HE2 H N N 502 TYR HH H N N 503 TYR HXT H N N 504 VAL N N N N 505 VAL CA C N S 506 VAL C C N N 507 VAL O O N N 508 VAL CB C N N 509 VAL CG1 C N N 510 VAL CG2 C N N 511 VAL OXT O N N 512 VAL H H N N 513 VAL H2 H N N 514 VAL HA H N N 515 VAL HB H N N 516 VAL HG11 H N N 517 VAL HG12 H N N 518 VAL HG13 H N N 519 VAL HG21 H N N 520 VAL HG22 H N N 521 VAL HG23 H N N 522 VAL HXT H N N 523 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LUT C1 C2 sing N N 181 LUT C1 C6 sing N N 182 LUT C1 C16 sing N N 183 LUT C1 C17 sing N N 184 LUT C2 C3 sing N N 185 LUT C2 H21 sing N N 186 LUT C2 H22 sing N N 187 LUT C3 C4 sing N N 188 LUT C3 O3 sing N N 189 LUT C3 H3 sing N N 190 LUT C4 C5 sing N N 191 LUT C4 H41 sing N N 192 LUT C4 H42 sing N N 193 LUT C5 C6 doub N N 194 LUT C5 C18 sing N N 195 LUT C6 C7 sing N N 196 LUT C7 C8 doub N E 197 LUT C7 H7 sing N N 198 LUT C8 C9 sing N N 199 LUT C8 H8 sing N N 200 LUT C9 C10 doub N E 201 LUT C9 C19 sing N N 202 LUT C10 C11 sing N N 203 LUT C10 H10 sing N N 204 LUT C11 C12 doub N E 205 LUT C11 H11 sing N N 206 LUT C12 C13 sing N N 207 LUT C12 H12 sing N N 208 LUT C13 C14 doub N E 209 LUT C13 C20 sing N N 210 LUT C14 C15 sing N N 211 LUT C14 H14 sing N N 212 LUT C15 C35 doub N E 213 LUT C15 H15 sing N N 214 LUT C16 H161 sing N N 215 LUT C16 H162 sing N N 216 LUT C16 H163 sing N N 217 LUT C17 H171 sing N N 218 LUT C17 H172 sing N N 219 LUT C17 H173 sing N N 220 LUT C18 H181 sing N N 221 LUT C18 H182 sing N N 222 LUT C18 H183 sing N N 223 LUT C19 H191 sing N N 224 LUT C19 H192 sing N N 225 LUT C19 H193 sing N N 226 LUT C20 H201 sing N N 227 LUT C20 H202 sing N N 228 LUT C20 H203 sing N N 229 LUT O3 HO3 sing N N 230 LUT C21 C22 sing N N 231 LUT C21 C26 sing N N 232 LUT C21 C36 sing N N 233 LUT C21 C37 sing N N 234 LUT C22 C23 sing N N 235 LUT C22 H221 sing N N 236 LUT C22 H222 sing N N 237 LUT C23 C24 sing N N 238 LUT C23 O23 sing N N 239 LUT C23 H23 sing N N 240 LUT C24 C25 doub N N 241 LUT C24 H24 sing N N 242 LUT C25 C26 sing N N 243 LUT C25 C38 sing N N 244 LUT C26 C27 sing N N 245 LUT C26 H26 sing N N 246 LUT C27 C28 doub N E 247 LUT C27 H27 sing N N 248 LUT C28 C29 sing N N 249 LUT C28 H28 sing N N 250 LUT C29 C30 doub N E 251 LUT C29 C39 sing N N 252 LUT C30 C31 sing N N 253 LUT C30 H30 sing N N 254 LUT C31 C32 doub N E 255 LUT C31 H31 sing N N 256 LUT C32 C33 sing N N 257 LUT C32 H32 sing N N 258 LUT C33 C34 doub N E 259 LUT C33 C40 sing N N 260 LUT C34 C35 sing N N 261 LUT C34 H34 sing N N 262 LUT C35 H35 sing N N 263 LUT C36 H361 sing N N 264 LUT C36 H362 sing N N 265 LUT C36 H363 sing N N 266 LUT C37 H371 sing N N 267 LUT C37 H372 sing N N 268 LUT C37 H373 sing N N 269 LUT C38 H381 sing N N 270 LUT C38 H382 sing N N 271 LUT C38 H383 sing N N 272 LUT C39 H391 sing N N 273 LUT C39 H392 sing N N 274 LUT C39 H393 sing N N 275 LUT C40 H401 sing N N 276 LUT C40 H402 sing N N 277 LUT C40 H403 sing N N 278 LUT O23 H1 sing N N 279 LYS N CA sing N N 280 LYS N H sing N N 281 LYS N H2 sing N N 282 LYS CA C sing N N 283 LYS CA CB sing N N 284 LYS CA HA sing N N 285 LYS C O doub N N 286 LYS C OXT sing N N 287 LYS CB CG sing N N 288 LYS CB HB2 sing N N 289 LYS CB HB3 sing N N 290 LYS CG CD sing N N 291 LYS CG HG2 sing N N 292 LYS CG HG3 sing N N 293 LYS CD CE sing N N 294 LYS CD HD2 sing N N 295 LYS CD HD3 sing N N 296 LYS CE NZ sing N N 297 LYS CE HE2 sing N N 298 LYS CE HE3 sing N N 299 LYS NZ HZ1 sing N N 300 LYS NZ HZ2 sing N N 301 LYS NZ HZ3 sing N N 302 LYS OXT HXT sing N N 303 MET N CA sing N N 304 MET N H sing N N 305 MET N H2 sing N N 306 MET CA C sing N N 307 MET CA CB sing N N 308 MET CA HA sing N N 309 MET C O doub N N 310 MET C OXT sing N N 311 MET CB CG sing N N 312 MET CB HB2 sing N N 313 MET CB HB3 sing N N 314 MET CG SD sing N N 315 MET CG HG2 sing N N 316 MET CG HG3 sing N N 317 MET SD CE sing N N 318 MET CE HE1 sing N N 319 MET CE HE2 sing N N 320 MET CE HE3 sing N N 321 MET OXT HXT sing N N 322 PHE N CA sing N N 323 PHE N H sing N N 324 PHE N H2 sing N N 325 PHE CA C sing N N 326 PHE CA CB sing N N 327 PHE CA HA sing N N 328 PHE C O doub N N 329 PHE C OXT sing N N 330 PHE CB CG sing N N 331 PHE CB HB2 sing N N 332 PHE CB HB3 sing N N 333 PHE CG CD1 doub Y N 334 PHE CG CD2 sing Y N 335 PHE CD1 CE1 sing Y N 336 PHE CD1 HD1 sing N N 337 PHE CD2 CE2 doub Y N 338 PHE CD2 HD2 sing N N 339 PHE CE1 CZ doub Y N 340 PHE CE1 HE1 sing N N 341 PHE CE2 CZ sing Y N 342 PHE CE2 HE2 sing N N 343 PHE CZ HZ sing N N 344 PHE OXT HXT sing N N 345 PRO N CA sing N N 346 PRO N CD sing N N 347 PRO N H sing N N 348 PRO CA C sing N N 349 PRO CA CB sing N N 350 PRO CA HA sing N N 351 PRO C O doub N N 352 PRO C OXT sing N N 353 PRO CB CG sing N N 354 PRO CB HB2 sing N N 355 PRO CB HB3 sing N N 356 PRO CG CD sing N N 357 PRO CG HG2 sing N N 358 PRO CG HG3 sing N N 359 PRO CD HD2 sing N N 360 PRO CD HD3 sing N N 361 PRO OXT HXT sing N N 362 RET C1 C2 sing N N 363 RET C1 C6 sing N N 364 RET C1 C16 sing N N 365 RET C1 C17 sing N N 366 RET C2 C3 sing N N 367 RET C2 H21 sing N N 368 RET C2 H22 sing N N 369 RET C3 C4 sing N N 370 RET C3 H31 sing N N 371 RET C3 H32 sing N N 372 RET C4 C5 sing N N 373 RET C4 H41 sing N N 374 RET C4 H42 sing N N 375 RET C5 C6 doub N N 376 RET C5 C18 sing N N 377 RET C6 C7 sing N N 378 RET C7 C8 doub N E 379 RET C7 H7 sing N N 380 RET C8 C9 sing N N 381 RET C8 H8 sing N N 382 RET C9 C10 doub N E 383 RET C9 C19 sing N N 384 RET C10 C11 sing N N 385 RET C10 H10 sing N N 386 RET C11 C12 doub N E 387 RET C11 H11 sing N N 388 RET C12 C13 sing N N 389 RET C12 H12 sing N N 390 RET C13 C14 doub N E 391 RET C13 C20 sing N N 392 RET C14 C15 sing N N 393 RET C14 H14 sing N N 394 RET C15 O1 doub N N 395 RET C15 H15 sing N N 396 RET C16 H161 sing N N 397 RET C16 H162 sing N N 398 RET C16 H163 sing N N 399 RET C17 H171 sing N N 400 RET C17 H172 sing N N 401 RET C17 H173 sing N N 402 RET C18 H181 sing N N 403 RET C18 H182 sing N N 404 RET C18 H183 sing N N 405 RET C19 H191 sing N N 406 RET C19 H192 sing N N 407 RET C19 H193 sing N N 408 RET C20 H201 sing N N 409 RET C20 H202 sing N N 410 RET C20 H203 sing N N 411 SER N CA sing N N 412 SER N H sing N N 413 SER N H2 sing N N 414 SER CA C sing N N 415 SER CA CB sing N N 416 SER CA HA sing N N 417 SER C O doub N N 418 SER C OXT sing N N 419 SER CB OG sing N N 420 SER CB HB2 sing N N 421 SER CB HB3 sing N N 422 SER OG HG sing N N 423 SER OXT HXT sing N N 424 THR N CA sing N N 425 THR N H sing N N 426 THR N H2 sing N N 427 THR CA C sing N N 428 THR CA CB sing N N 429 THR CA HA sing N N 430 THR C O doub N N 431 THR C OXT sing N N 432 THR CB OG1 sing N N 433 THR CB CG2 sing N N 434 THR CB HB sing N N 435 THR OG1 HG1 sing N N 436 THR CG2 HG21 sing N N 437 THR CG2 HG22 sing N N 438 THR CG2 HG23 sing N N 439 THR OXT HXT sing N N 440 TRP N CA sing N N 441 TRP N H sing N N 442 TRP N H2 sing N N 443 TRP CA C sing N N 444 TRP CA CB sing N N 445 TRP CA HA sing N N 446 TRP C O doub N N 447 TRP C OXT sing N N 448 TRP CB CG sing N N 449 TRP CB HB2 sing N N 450 TRP CB HB3 sing N N 451 TRP CG CD1 doub Y N 452 TRP CG CD2 sing Y N 453 TRP CD1 NE1 sing Y N 454 TRP CD1 HD1 sing N N 455 TRP CD2 CE2 doub Y N 456 TRP CD2 CE3 sing Y N 457 TRP NE1 CE2 sing Y N 458 TRP NE1 HE1 sing N N 459 TRP CE2 CZ2 sing Y N 460 TRP CE3 CZ3 doub Y N 461 TRP CE3 HE3 sing N N 462 TRP CZ2 CH2 doub Y N 463 TRP CZ2 HZ2 sing N N 464 TRP CZ3 CH2 sing Y N 465 TRP CZ3 HZ3 sing N N 466 TRP CH2 HH2 sing N N 467 TRP OXT HXT sing N N 468 TYR N CA sing N N 469 TYR N H sing N N 470 TYR N H2 sing N N 471 TYR CA C sing N N 472 TYR CA CB sing N N 473 TYR CA HA sing N N 474 TYR C O doub N N 475 TYR C OXT sing N N 476 TYR CB CG sing N N 477 TYR CB HB2 sing N N 478 TYR CB HB3 sing N N 479 TYR CG CD1 doub Y N 480 TYR CG CD2 sing Y N 481 TYR CD1 CE1 sing Y N 482 TYR CD1 HD1 sing N N 483 TYR CD2 CE2 doub Y N 484 TYR CD2 HD2 sing N N 485 TYR CE1 CZ doub Y N 486 TYR CE1 HE1 sing N N 487 TYR CE2 CZ sing Y N 488 TYR CE2 HE2 sing N N 489 TYR CZ OH sing N N 490 TYR OH HH sing N N 491 TYR OXT HXT sing N N 492 VAL N CA sing N N 493 VAL N H sing N N 494 VAL N H2 sing N N 495 VAL CA C sing N N 496 VAL CA CB sing N N 497 VAL CA HA sing N N 498 VAL C O doub N N 499 VAL C OXT sing N N 500 VAL CB CG1 sing N N 501 VAL CB CG2 sing N N 502 VAL CB HB sing N N 503 VAL CG1 HG11 sing N N 504 VAL CG1 HG12 sing N N 505 VAL CG1 HG13 sing N N 506 VAL CG2 HG21 sing N N 507 VAL CG2 HG22 sing N N 508 VAL CG2 HG23 sing N N 509 VAL OXT HXT sing N N 510 # _em_admin.current_status REL _em_admin.deposition_date 2025-08-21 _em_admin.deposition_site PDBJ _em_admin.entry_id 9WFA _em_admin.last_update 2026-03-18 _em_admin.map_release_date 2026-03-18 _em_admin.title 'Cryo-EM structure of psXR' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.32 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 33072 _em_entity_assembly_naturalsource.organism 'Gloeobacter violaceus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 48 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 5949 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 15 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 7937467 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.19_4092 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 EPU ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan JP24KJ0909 1 'Japan Science and Technology' Japan JPMJCR20E2 2 'Japan Society for the Promotion of Science (JSPS)' Japan JP24K23232 3 'Japan Agency for Medical Research and Development (AMED)' Japan JP24ama121012 4 'Japan Agency for Medical Research and Development (AMED)' Japan JP24ama121002 5 # _atom_sites.entry_id 9WFA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #