HEADER IMMUNOSUPPRESSANT 27-AUG-25 9WIA TITLE CRYSTAL STRUCTURE OF HELICOVERPA ARMIGERA ORAL SECRETION R-LIKE TITLE 2 PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HARP1; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOVERPA ARMIGERA; SOURCE 3 ORGANISM_TAXID: 29058; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EFFECTOR, PLANT IMMUNOLOGY, IMMUNOSUPPRESSANT EXPDTA X-RAY DIFFRACTION AUTHOR Y.G.ZHANG,T.T.RAN,W.W.WANG,F.ZHANG REVDAT 1 02-SEP-26 9WIA 0 JRNL AUTH Y.G.ZHANG,T.T.RAN,W.W.WANG,F.ZHANG JRNL TITL CRYSTAL STRUCTURE OF HELICOVERPA ARMIGERA ORAL SECRETION JRNL TITL 2 R-LIKE PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 3.9900 1.00 2869 153 0.2223 0.2366 REMARK 3 2 3.9900 - 3.1700 1.00 2713 132 0.1962 0.1984 REMARK 3 3 3.1700 - 2.7700 1.00 2696 123 0.2144 0.2566 REMARK 3 4 2.7700 - 2.5200 1.00 2657 116 0.2184 0.2419 REMARK 3 5 2.5200 - 2.3400 1.00 2618 145 0.2236 0.2294 REMARK 3 6 2.3400 - 2.2000 1.00 2632 144 0.2148 0.2220 REMARK 3 7 2.2000 - 2.0900 1.00 2595 138 0.1900 0.1926 REMARK 3 8 2.0900 - 2.0000 0.99 2622 122 0.2108 0.2408 REMARK 3 9 2.0000 - 1.9200 1.00 2585 133 0.2150 0.2157 REMARK 3 10 1.9200 - 1.8600 0.99 2553 144 0.2386 0.2716 REMARK 3 11 1.8600 - 1.8000 0.99 2548 139 0.2707 0.3587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1631 REMARK 3 ANGLE : 0.826 2210 REMARK 3 CHIRALITY : 0.064 217 REMARK 3 PLANARITY : 0.006 287 REMARK 3 DIHEDRAL : 5.778 233 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9WIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 29-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1300063071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08 M TRIS HYDROCHLORIDE, 1.6 M REMARK 280 AMMONIUM PHOSPHATE MONOBASIC, 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.16000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.43300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.43300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.08000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.43300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.43300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.24000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.43300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.43300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.08000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.43300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.43300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.24000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -31.43300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 31.43300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -40.08000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 310 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 5 REMARK 465 GLN A 6 REMARK 465 GLN A 7 REMARK 465 ASN A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 LEU C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 0.37 84.03 REMARK 500 ASN C 8 108.37 -25.32 REMARK 500 ASN C 80 4.20 83.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 21 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9WIA A 5 105 PDB 9WIA 9WIA 5 105 DBREF 9WIA C 5 105 PDB 9WIA 9WIA 5 105 SEQRES 1 A 101 LEU GLN GLN ASN PRO ALA PHE ARG ALA ASN MET TYR GLN SEQRES 2 A 101 GLY ALA ILE ARG PRO GLY ASP ARG LEU LEU TYR ARG ASN SEQRES 3 A 101 TYR TYR TYR LYS ALA PRO ILE ALA ASN ALA VAL GLN TYR SEQRES 4 A 101 GLN ASP ILE THR TYR ARG GLY SER SER SER THR ARG ILE SEQRES 5 A 101 SER PHE ILE GLN ALA VAL GLU VAL GLY GLN THR GLN TRP SEQRES 6 A 101 GLY GLN PRO SER LEU ARG SER GLY GLY VAL ASN PHE SER SEQRES 7 A 101 ASN ALA THR ILE ARG LEU THR SER ALA ARG GLY TRP GLY SEQRES 8 A 101 TYR TYR TYR MET ILE GLU ILE TRP GLY ARG SEQRES 1 C 101 LEU GLN GLN ASN PRO ALA PHE ARG ALA ASN MET TYR GLN SEQRES 2 C 101 GLY ALA ILE ARG PRO GLY ASP ARG LEU LEU TYR ARG ASN SEQRES 3 C 101 TYR TYR TYR LYS ALA PRO ILE ALA ASN ALA VAL GLN TYR SEQRES 4 C 101 GLN ASP ILE THR TYR ARG GLY SER SER SER THR ARG ILE SEQRES 5 C 101 SER PHE ILE GLN ALA VAL GLU VAL GLY GLN THR GLN TRP SEQRES 6 C 101 GLY GLN PRO SER LEU ARG SER GLY GLY VAL ASN PHE SER SEQRES 7 C 101 ASN ALA THR ILE ARG LEU THR SER ALA ARG GLY TRP GLY SEQRES 8 C 101 TYR TYR TYR MET ILE GLU ILE TRP GLY ARG HET SO4 A 201 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *92(H2 O) SHEET 1 AA1 4 MET A 15 GLY A 18 0 SHEET 2 AA1 4 ARG A 55 GLU A 63 -1 O ALA A 61 N MET A 15 SHEET 3 AA1 4 TYR A 96 ARG A 105 -1 O ARG A 105 N ARG A 55 SHEET 4 AA1 4 ARG A 25 LYS A 34 -1 N ARG A 25 O GLY A 104 SHEET 1 AA2 3 TYR A 43 ARG A 49 0 SHEET 2 AA2 3 ASN A 83 THR A 89 -1 O ILE A 86 N ILE A 46 SHEET 3 AA2 3 GLN A 71 GLY A 77 -1 N ARG A 75 O THR A 85 SHEET 1 AA3 4 MET C 15 GLY C 18 0 SHEET 2 AA3 4 ARG C 55 GLU C 63 -1 O ALA C 61 N MET C 15 SHEET 3 AA3 4 TYR C 96 ARG C 105 -1 O ARG C 105 N ARG C 55 SHEET 4 AA3 4 ARG C 25 LYS C 34 -1 N ARG C 25 O GLY C 104 SHEET 1 AA4 3 TYR C 43 ARG C 49 0 SHEET 2 AA4 3 ASN C 83 THR C 89 -1 O ILE C 86 N ILE C 46 SHEET 3 AA4 3 GLN C 71 GLY C 77 -1 N SER C 73 O ARG C 87 CRYST1 62.866 62.866 160.320 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006238 0.00000 CONECT 1602 1603 1604 1605 1606 CONECT 1603 1602 CONECT 1604 1602 CONECT 1605 1602 CONECT 1606 1602 MASTER 281 0 1 0 14 0 0 6 1685 2 5 16 END