HEADER TRANSPORT PROTEIN 08-SEP-25 9WP4 TITLE CRYSTAL STRUCTURE OF PHOSPHATE BINDING PROTEIN FROM SYNECHOCYSTIS SP. TITLE 2 PCC 6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PHOSPHATE-BINDING PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803 SUBSTR. KAZUSA; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 GENE: PSTS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803 SUBSTR. KAZUSA; SOURCE 9 ORGANISM_TAXID: 1111708; SOURCE 10 GENE: PSTS; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PHOSPHATE BINDING PROTEIN, ATP-BINDING CASSETTE (ABC) TRANSPORTER, KEYWDS 2 PROTEIN TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.WANG,Y.P.LU,H.L.MA REVDAT 1 16-SEP-26 9WP4 0 JRNL AUTH C.Y.WANG,Y.P.LU,H.L.MA JRNL TITL CRYSTAL STRUCTURE OF PHOSPHATE BINDING PROTEIN FROM JRNL TITL 2 SYNECHOCYSTIS SP. PCC 6803 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.7 REMARK 3 NUMBER OF REFLECTIONS : 73888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7600 - 4.1800 0.99 4485 227 0.1642 0.2006 REMARK 3 2 4.1800 - 3.3200 0.85 3767 211 0.1594 0.2145 REMARK 3 3 3.3200 - 2.9000 1.00 4360 226 0.1748 0.2157 REMARK 3 4 2.9000 - 2.6300 0.90 4020 205 0.1888 0.2146 REMARK 3 5 2.6300 - 2.4500 1.00 4406 216 0.1775 0.2510 REMARK 3 6 2.4500 - 2.3000 1.00 4398 206 0.1683 0.2567 REMARK 3 7 2.3000 - 2.1900 0.88 3856 184 0.1687 0.2513 REMARK 3 8 2.1900 - 2.0900 0.99 4308 227 0.1667 0.2403 REMARK 3 9 2.0900 - 2.0100 0.84 3692 216 0.1786 0.2305 REMARK 3 10 2.0100 - 1.9500 0.96 3770 233 0.1842 0.2566 REMARK 3 11 1.9400 - 1.8800 0.74 3043 156 0.1935 0.3106 REMARK 3 12 1.8800 - 1.8300 0.95 3784 196 0.1866 0.2508 REMARK 3 13 1.8300 - 1.7800 0.91 3989 222 0.1900 0.2445 REMARK 3 14 1.7800 - 1.7400 0.80 3444 194 0.1908 0.2739 REMARK 3 15 1.7400 - 1.7000 0.54 2348 128 0.2031 0.2831 REMARK 3 16 1.7000 - 1.6600 0.62 2699 131 0.1958 0.2660 REMARK 3 17 1.6600 - 1.6300 0.53 2303 121 0.2012 0.2532 REMARK 3 18 1.6300 - 1.6000 0.46 2019 110 0.1936 0.2603 REMARK 3 19 1.6000 - 1.5700 0.41 1772 94 0.1984 0.2960 REMARK 3 20 1.5700 - 1.5400 0.31 1343 66 0.2097 0.3050 REMARK 3 21 1.5400 - 1.5200 0.17 755 36 0.2178 0.3275 REMARK 3 22 1.5200 - 1.4900 0.17 735 31 0.1985 0.2886 REMARK 3 23 1.4900 - 1.4700 0.12 445 17 0.2257 0.4453 REMARK 3 24 1.4700 - 1.4500 0.07 259 8 0.2240 0.3708 REMARK 3 25 1.4500 - 1.4300 0.03 150 4 0.2687 0.5348 REMARK 3 26 1.4300 - 1.4100 0.02 69 4 0.3235 0.4533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5044 REMARK 3 ANGLE : 0.979 6879 REMARK 3 CHIRALITY : 0.087 777 REMARK 3 PLANARITY : 0.008 904 REMARK 3 DIHEDRAL : 7.124 731 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9WP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 12-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300063445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 37.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 61.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.20.1_4487: ???) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS PH 9.0, 30% PEG REMARK 280 3000., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.42150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 271 O HOH B 501 1.91 REMARK 500 OE1 GLN A 223 O HOH A 501 1.94 REMARK 500 OE2 GLU A 107 O HOH A 501 1.95 REMARK 500 O HOH B 791 O HOH B 895 2.04 REMARK 500 O ASP A 322 O HOH A 502 2.06 REMARK 500 N LEU B 83 O HOH B 501 2.09 REMARK 500 O HOH B 855 O HOH B 914 2.10 REMARK 500 O HOH B 520 O HOH B 773 2.10 REMARK 500 O HOH B 508 O HOH B 804 2.11 REMARK 500 O HOH A 520 O HOH A 738 2.12 REMARK 500 O HOH B 631 O HOH B 831 2.12 REMARK 500 O HOH B 800 O HOH B 879 2.13 REMARK 500 O HOH A 562 O HOH A 719 2.13 REMARK 500 O HOH A 943 O HOH A 990 2.13 REMARK 500 OD1 ASP A 122 O HOH A 503 2.14 REMARK 500 O PRO A 302 O HOH A 504 2.14 REMARK 500 O HOH B 841 O HOH B 948 2.14 REMARK 500 O HOH B 525 O HOH B 789 2.15 REMARK 500 O HOH A 686 O HOH A 967 2.15 REMARK 500 O HOH A 836 O HOH A 893 2.15 REMARK 500 O HOH B 572 O HOH B 803 2.16 REMARK 500 O HOH A 545 O HOH A 810 2.16 REMARK 500 O HOH B 803 O HOH B 866 2.16 REMARK 500 O HOH A 706 O HOH A 935 2.17 REMARK 500 O HOH B 772 O HOH B 933 2.17 REMARK 500 O HOH B 847 O HOH B 868 2.17 REMARK 500 O HOH A 531 O HOH A 633 2.18 REMARK 500 O HOH B 766 O HOH B 907 2.18 REMARK 500 O HOH B 883 O HOH B 901 2.19 REMARK 500 O HOH B 580 O HOH B 836 2.19 REMARK 500 O HOH B 831 O HOH B 867 2.19 REMARK 500 NE2 GLN A 33 O HOH A 505 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 519 O HOH B 626 1545 2.04 REMARK 500 O HOH A 503 O HOH A 602 1545 2.09 REMARK 500 O HOH A 809 O HOH A 935 1455 2.13 REMARK 500 O HOH A 886 O HOH A 951 2556 2.14 REMARK 500 O HOH B 728 O HOH B 886 2555 2.15 REMARK 500 O HOH A 795 O HOH A 935 1455 2.18 REMARK 500 O HOH B 857 O HOH B 934 2455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 19 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 PHE A 19 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 PHE B 19 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 -134.35 52.33 REMARK 500 PRO A 247 -165.29 -77.64 REMARK 500 ASN A 295 -96.39 -110.17 REMARK 500 ALA B 67 -134.59 53.61 REMARK 500 ASN B 295 -99.36 -106.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 989 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 990 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 992 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B 971 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 972 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 973 DISTANCE = 6.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 287 OE1 REMARK 620 2 GLU A 287 OE2 52.9 REMARK 620 3 ASP A 322 O 114.4 74.5 REMARK 620 4 ASP A 322 OD1 80.2 102.3 75.4 REMARK 620 5 SER A 325 O 105.8 79.0 98.4 172.9 REMARK 620 6 TYR A 328 O 79.3 123.8 161.5 95.9 89.0 REMARK 620 7 HOH A 502 O 131.8 79.2 46.4 119.8 53.4 133.6 REMARK 620 8 HOH A 787 O 160.3 146.8 79.9 91.1 84.3 84.0 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 287 OE1 REMARK 620 2 GLU B 287 OE2 54.4 REMARK 620 3 ASP B 322 O 118.0 77.2 REMARK 620 4 ASP B 322 OD1 80.7 103.7 75.5 REMARK 620 5 SER B 325 O 109.8 81.5 96.9 169.3 REMARK 620 6 TYR B 328 O 76.3 122.6 159.8 94.2 90.7 REMARK 620 7 HOH B 712 O 159.6 145.9 75.8 89.2 81.4 86.9 REMARK 620 N 1 2 3 4 5 6 DBREF 9WP4 A 1 333 UNP Q55199 Q55199_SYNY3 51 383 DBREF 9WP4 B 1 333 UNP Q55199 Q55199_SYNY3 51 383 SEQRES 1 A 333 THR ALA ALA ASP ALA PHE ALA SER LYS VAL SER LEU THR SEQRES 2 A 333 GLY ALA GLY ALA SER PHE PRO ALA PRO LEU TYR GLN GLY SEQRES 3 A 333 TRP PHE VAL ALA LEU ASN GLN ALA VAL PRO ASN LEU GLU SEQRES 4 A 333 VAL ASN TYR GLN SER VAL GLY SER GLY ALA GLY VAL GLU SEQRES 5 A 333 GLN PHE MET SER MLY THR VAL ASP PHE GLY ALA SER ASP SEQRES 6 A 333 VAL ALA MET ASP ASP GLU GLU ILE ALA LYS VAL ASN GLY SEQRES 7 A 333 GLU VAL VAL MET LEU PRO MET THR ALA GLY SER ILE VAL SEQRES 8 A 333 MET ALA TYR ASN LEU PRO GLY VAL GLU GLY LEU LYS LEU SEQRES 9 A 333 SER GLN GLU ALA LEU ALA GLY ILE MET LEU GLY ASN ILE SEQRES 10 A 333 THR MLY TRP ASN ASP PRO MLY LEU VAL ALA ASP ASN PRO SEQRES 11 A 333 ASP LEU THR LEU PRO ASP ARG PRO ILE THR VAL VAL HIS SEQRES 12 A 333 ARG SER ASP GLY SER GLY THR THR ALA VAL PHE THR MET SEQRES 13 A 333 ASN LEU ALA ALA MET SER PRO GLU PHE LYS GLU THR ILE SEQRES 14 A 333 GLY ASP GLY LYS THR VAL GLU TRP PRO THR SER LYS GLY SEQRES 15 A 333 LYS PHE ILE GLY GLY MLY GLY ASN GLU GLY VAL THR ALA SEQRES 16 A 333 GLY ILE GLN GLN ASN GLU GLY ALA ILE GLY TYR VAL GLU SEQRES 17 A 333 TYR GLY TYR ALA THR ASN ASN ASN LEU THR MET ALA SER SEQRES 18 A 333 LEU GLN ASN LYS ASP GLY GLN PHE VAL VAL PRO THR ASP SEQRES 19 A 333 GLU ASN ALA SER ALA THR LEU ALA ALA VAL GLU LEU PRO SEQRES 20 A 333 GLU ASN LEU ARG GLU PHE ILE THR ASN PRO ALA GLY ALA SEQRES 21 A 333 ASP SER TYR PRO ILE VAL THR TYR THR TRP MET LEU LEU SEQRES 22 A 333 TYR PRO GLN TYR ALA ASP ALA GLU LYS ALA LYS GLY ILE SEQRES 23 A 333 GLU ALA MET VAL GLU PHE GLY LEU ASN GLU GLY GLN THR SEQRES 24 A 333 MET ALA PRO THR LEU GLY TYR VAL PRO LEU PRO GLN ASN SEQRES 25 A 333 VAL ARG GLU LYS VAL ALA ALA ALA ALA ASP LYS ILE SER SEQRES 26 A 333 PRO ASP TYR THR ILE THR LEU LYS SEQRES 1 B 333 THR ALA ALA ASP ALA PHE ALA SER LYS VAL SER LEU THR SEQRES 2 B 333 GLY ALA GLY ALA SER PHE PRO ALA PRO LEU TYR GLN GLY SEQRES 3 B 333 TRP PHE VAL ALA LEU ASN GLN ALA VAL PRO ASN LEU GLU SEQRES 4 B 333 VAL ASN TYR GLN SER VAL GLY SER GLY ALA GLY VAL GLU SEQRES 5 B 333 GLN PHE MET SER LYS THR VAL ASP PHE GLY ALA SER ASP SEQRES 6 B 333 VAL ALA MET ASP ASP GLU GLU ILE ALA MLY VAL ASN GLY SEQRES 7 B 333 GLU VAL VAL MET LEU PRO MET THR ALA GLY SER ILE VAL SEQRES 8 B 333 MET ALA TYR ASN LEU PRO GLY VAL GLU GLY LEU LYS LEU SEQRES 9 B 333 SER GLN GLU ALA LEU ALA GLY ILE MET LEU GLY ASN ILE SEQRES 10 B 333 THR MLY TRP ASN ASP PRO LYS LEU VAL ALA ASP ASN PRO SEQRES 11 B 333 ASP LEU THR LEU PRO ASP ARG PRO ILE THR VAL VAL HIS SEQRES 12 B 333 ARG SER ASP GLY SER GLY THR THR ALA VAL PHE THR MET SEQRES 13 B 333 ASN LEU ALA ALA MET SER PRO GLU PHE LYS GLU THR ILE SEQRES 14 B 333 GLY ASP GLY LYS THR VAL GLU TRP PRO THR SER MLY GLY SEQRES 15 B 333 MLY PHE ILE GLY GLY LYS GLY ASN GLU GLY VAL THR ALA SEQRES 16 B 333 GLY ILE GLN GLN ASN GLU GLY ALA ILE GLY TYR VAL GLU SEQRES 17 B 333 TYR GLY TYR ALA THR ASN ASN ASN LEU THR MET ALA SER SEQRES 18 B 333 LEU GLN ASN LYS ASP GLY GLN PHE VAL VAL PRO THR ASP SEQRES 19 B 333 GLU ASN ALA SER ALA THR LEU ALA ALA VAL GLU LEU PRO SEQRES 20 B 333 GLU ASN LEU ARG GLU PHE ILE THR ASN PRO ALA GLY ALA SEQRES 21 B 333 ASP SER TYR PRO ILE VAL THR TYR THR TRP MET LEU LEU SEQRES 22 B 333 TYR PRO GLN TYR ALA ASP ALA GLU LYS ALA LYS GLY ILE SEQRES 23 B 333 GLU ALA MET VAL GLU PHE GLY LEU ASN GLU GLY GLN THR SEQRES 24 B 333 MET ALA PRO THR LEU GLY TYR VAL PRO LEU PRO GLN ASN SEQRES 25 B 333 VAL ARG GLU LYS VAL ALA ALA ALA ALA ASP LYS ILE SER SEQRES 26 B 333 PRO ASP TYR THR ILE THR LEU LYS MODRES 9WP4 MLY A 57 LYS MODIFIED RESIDUE MODRES 9WP4 MLY A 119 LYS MODIFIED RESIDUE MODRES 9WP4 MLY A 124 LYS MODIFIED RESIDUE MODRES 9WP4 MLY A 188 LYS MODIFIED RESIDUE MODRES 9WP4 MLY B 75 LYS MODIFIED RESIDUE MODRES 9WP4 MLY B 119 LYS MODIFIED RESIDUE MODRES 9WP4 MLY B 181 LYS MODIFIED RESIDUE MODRES 9WP4 MLY B 183 LYS MODIFIED RESIDUE HET MLY A 57 11 HET MLY A 119 11 HET MLY A 124 11 HET MLY A 188 11 HET MLY B 75 11 HET MLY B 119 11 HET MLY B 181 11 HET MLY B 183 11 HET PO4 A 401 5 HET MG A 402 1 HET PO4 B 401 5 HET MG B 402 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 1 MLY 8(C8 H18 N2 O2) FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *965(H2 O) HELIX 1 AA1 PRO A 20 VAL A 35 1 16 HELIX 2 AA2 GLY A 46 SER A 56 1 11 HELIX 3 AA3 ASP A 69 VAL A 76 1 8 HELIX 4 AA4 SER A 105 LEU A 114 1 10 HELIX 5 AA5 ASP A 122 ASN A 129 1 8 HELIX 6 AA6 SER A 148 SER A 162 1 15 HELIX 7 AA7 SER A 162 ILE A 169 1 8 HELIX 8 AA8 MLY A 188 ASN A 200 1 13 HELIX 9 AA9 TYR A 209 ASN A 215 1 7 HELIX 10 AB1 THR A 233 VAL A 244 1 12 HELIX 11 AB2 ASP A 279 ASN A 295 1 17 HELIX 12 AB3 ASN A 295 ALA A 301 1 7 HELIX 13 AB4 PRO A 302 LEU A 304 5 3 HELIX 14 AB5 PRO A 310 ASP A 322 1 13 HELIX 15 AB6 PRO B 20 VAL B 35 1 16 HELIX 16 AB7 GLY B 46 SER B 56 1 11 HELIX 17 AB8 ASP B 69 VAL B 76 1 8 HELIX 18 AB9 SER B 105 LEU B 114 1 10 HELIX 19 AC1 ASP B 122 ASN B 129 1 8 HELIX 20 AC2 SER B 148 SER B 162 1 15 HELIX 21 AC3 SER B 162 ILE B 169 1 8 HELIX 22 AC4 LYS B 188 ASN B 200 1 13 HELIX 23 AC5 TYR B 209 ASN B 214 1 6 HELIX 24 AC6 THR B 233 ALA B 243 1 11 HELIX 25 AC7 ASP B 279 ASN B 295 1 17 HELIX 26 AC8 ASN B 295 ALA B 301 1 7 HELIX 27 AC9 PRO B 302 LEU B 304 5 3 HELIX 28 AD1 PRO B 310 ASP B 322 1 13 SHEET 1 AA1 8 LEU A 38 SER A 44 0 SHEET 2 AA1 8 VAL A 10 GLY A 16 1 N LEU A 12 O GLU A 39 SHEET 3 AA1 8 PHE A 61 SER A 64 1 O PHE A 61 N ALA A 15 SHEET 4 AA1 8 VAL A 266 LEU A 273 -1 O LEU A 272 N GLY A 62 SHEET 5 AA1 8 VAL A 81 ASN A 95 -1 N LEU A 83 O MET A 271 SHEET 6 AA1 8 ALA A 203 GLU A 208 -1 O VAL A 207 N VAL A 91 SHEET 7 AA1 8 THR A 140 ARG A 144 1 N VAL A 142 O ILE A 204 SHEET 8 AA1 8 LYS A 183 GLY A 187 1 O LYS A 183 N VAL A 141 SHEET 1 AA2 6 LEU A 38 SER A 44 0 SHEET 2 AA2 6 VAL A 10 GLY A 16 1 N LEU A 12 O GLU A 39 SHEET 3 AA2 6 PHE A 61 SER A 64 1 O PHE A 61 N ALA A 15 SHEET 4 AA2 6 VAL A 266 LEU A 273 -1 O LEU A 272 N GLY A 62 SHEET 5 AA2 6 VAL A 81 ASN A 95 -1 N LEU A 83 O MET A 271 SHEET 6 AA2 6 THR A 218 MET A 219 -1 O THR A 218 N TYR A 94 SHEET 1 AA3 3 LYS A 103 LEU A 104 0 SHEET 2 AA3 3 SER A 221 GLN A 223 1 O SER A 221 N LEU A 104 SHEET 3 AA3 3 PHE A 229 VAL A 230 -1 O VAL A 230 N LEU A 222 SHEET 1 AA4 8 LEU B 38 SER B 44 0 SHEET 2 AA4 8 VAL B 10 GLY B 16 1 N LEU B 12 O GLU B 39 SHEET 3 AA4 8 PHE B 61 SER B 64 1 O PHE B 61 N ALA B 15 SHEET 4 AA4 8 VAL B 266 LEU B 273 -1 O LEU B 272 N GLY B 62 SHEET 5 AA4 8 VAL B 81 ASN B 95 -1 N LEU B 83 O MET B 271 SHEET 6 AA4 8 ALA B 203 GLU B 208 -1 O VAL B 207 N VAL B 91 SHEET 7 AA4 8 THR B 140 ARG B 144 1 N VAL B 142 O ILE B 204 SHEET 8 AA4 8 MLY B 183 GLY B 187 1 O MLY B 183 N VAL B 141 SHEET 1 AA5 6 LEU B 38 SER B 44 0 SHEET 2 AA5 6 VAL B 10 GLY B 16 1 N LEU B 12 O GLU B 39 SHEET 3 AA5 6 PHE B 61 SER B 64 1 O PHE B 61 N ALA B 15 SHEET 4 AA5 6 VAL B 266 LEU B 273 -1 O LEU B 272 N GLY B 62 SHEET 5 AA5 6 VAL B 81 ASN B 95 -1 N LEU B 83 O MET B 271 SHEET 6 AA5 6 THR B 218 MET B 219 -1 O THR B 218 N TYR B 94 SHEET 1 AA6 3 LYS B 103 LEU B 104 0 SHEET 2 AA6 3 SER B 221 GLN B 223 1 O SER B 221 N LEU B 104 SHEET 3 AA6 3 PHE B 229 VAL B 230 -1 O VAL B 230 N LEU B 222 LINK C SER A 56 N MLY A 57 1555 1555 1.34 LINK C MLY A 57 N THR A 58 1555 1555 1.34 LINK C THR A 118 N MLY A 119 1555 1555 1.34 LINK C MLY A 119 N TRP A 120 1555 1555 1.33 LINK C PRO A 123 N MLY A 124 1555 1555 1.33 LINK C MLY A 124 N LEU A 125 1555 1555 1.33 LINK C GLY A 187 N MLY A 188 1555 1555 1.33 LINK C MLY A 188 N GLY A 189 1555 1555 1.33 LINK C ALA B 74 N MLY B 75 1555 1555 1.33 LINK C MLY B 75 N VAL B 76 1555 1555 1.33 LINK C THR B 118 N MLY B 119 1555 1555 1.33 LINK C MLY B 119 N TRP B 120 1555 1555 1.33 LINK C SER B 180 N MLY B 181 1555 1555 1.33 LINK C MLY B 181 N GLY B 182 1555 1555 1.33 LINK C GLY B 182 N MLY B 183 1555 1555 1.33 LINK C MLY B 183 N PHE B 184 1555 1555 1.33 LINK OE1 GLU A 287 MG MG A 402 1555 1555 2.39 LINK OE2 GLU A 287 MG MG A 402 1555 1555 2.50 LINK O ASP A 322 MG MG A 402 1555 1555 2.42 LINK OD1 ASP A 322 MG MG A 402 1555 1555 2.27 LINK O SER A 325 MG MG A 402 1555 1555 2.39 LINK O TYR A 328 MG MG A 402 1555 1555 2.18 LINK MG MG A 402 O HOH A 502 1555 1555 2.76 LINK MG MG A 402 O HOH A 787 1555 1555 2.35 LINK OE1 GLU B 287 MG MG B 402 1555 1555 2.42 LINK OE2 GLU B 287 MG MG B 402 1555 1555 2.39 LINK O ASP B 322 MG MG B 402 1555 1555 2.31 LINK OD1 ASP B 322 MG MG B 402 1555 1555 2.47 LINK O SER B 325 MG MG B 402 1555 1555 2.33 LINK O TYR B 328 MG MG B 402 1555 1555 2.26 LINK MG MG B 402 O HOH B 712 1555 1555 2.38 CRYST1 37.768 64.843 129.157 90.00 91.39 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026477 0.000000 0.000642 0.00000 SCALE2 0.000000 0.015422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007745 0.00000 CONECT 384 388 CONECT 388 384 389 CONECT 389 388 390 397 CONECT 390 389 391 CONECT 391 390 392 CONECT 392 391 393 CONECT 393 392 394 CONECT 394 393 395 396 CONECT 395 394 CONECT 396 394 CONECT 397 389 398 399 CONECT 398 397 CONECT 399 397 CONECT 830 835 CONECT 835 830 836 CONECT 836 835 837 844 CONECT 837 836 838 CONECT 838 837 839 CONECT 839 838 840 CONECT 840 839 841 CONECT 841 840 842 843 CONECT 842 841 CONECT 843 841 CONECT 844 836 845 846 CONECT 845 844 CONECT 846 844 CONECT 878 883 CONECT 883 878 884 CONECT 884 883 885 892 CONECT 885 884 886 CONECT 886 885 887 CONECT 887 886 888 CONECT 888 887 889 CONECT 889 888 890 891 CONECT 890 889 CONECT 891 889 CONECT 892 884 893 894 CONECT 893 892 CONECT 894 892 CONECT 1360 1362 CONECT 1362 1360 1363 CONECT 1363 1362 1364 1371 CONECT 1364 1363 1365 CONECT 1365 1364 1366 CONECT 1366 1365 1367 CONECT 1367 1366 1368 CONECT 1368 1367 1369 1370 CONECT 1369 1368 CONECT 1370 1368 CONECT 1371 1363 1372 1373 CONECT 1372 1371 CONECT 1373 1371 CONECT 2123 4942 CONECT 2124 4942 CONECT 2377 4942 CONECT 2380 4942 CONECT 2402 4942 CONECT 2423 4942 CONECT 2981 2984 CONECT 2984 2981 2985 CONECT 2985 2984 2986 2993 CONECT 2986 2985 2987 CONECT 2987 2986 2988 CONECT 2988 2987 2989 CONECT 2989 2988 2990 CONECT 2990 2989 2991 2992 CONECT 2991 2990 CONECT 2992 2990 CONECT 2993 2985 2994 2995 CONECT 2994 2993 CONECT 2995 2993 CONECT 3294 3299 CONECT 3299 3294 3300 CONECT 3300 3299 3301 3308 CONECT 3301 3300 3302 CONECT 3302 3301 3303 CONECT 3303 3302 3304 CONECT 3304 3303 3305 CONECT 3305 3304 3306 3307 CONECT 3306 3305 CONECT 3307 3305 CONECT 3308 3300 3309 3310 CONECT 3309 3308 CONECT 3310 3308 CONECT 3771 3775 CONECT 3775 3771 3776 CONECT 3776 3775 3777 3784 CONECT 3777 3776 3778 CONECT 3778 3777 3779 CONECT 3779 3778 3780 CONECT 3780 3779 3781 CONECT 3781 3780 3782 3783 CONECT 3782 3781 CONECT 3783 3781 CONECT 3784 3776 3785 3786 CONECT 3785 3784 CONECT 3786 3784 CONECT 3788 3790 CONECT 3790 3788 3791 CONECT 3791 3790 3792 3799 CONECT 3792 3791 3793 CONECT 3793 3792 3794 CONECT 3794 3793 3795 CONECT 3795 3794 3796 CONECT 3796 3795 3797 3798 CONECT 3797 3796 CONECT 3798 3796 CONECT 3799 3791 3800 3801 CONECT 3800 3799 CONECT 3801 3799 CONECT 4587 4948 CONECT 4588 4948 CONECT 4841 4948 CONECT 4844 4948 CONECT 4866 4948 CONECT 4887 4948 CONECT 4937 4938 4939 4940 4941 CONECT 4938 4937 CONECT 4939 4937 CONECT 4940 4937 CONECT 4941 4937 CONECT 4942 2123 2124 2377 2380 CONECT 4942 2402 2423 4950 5235 CONECT 4943 4944 4945 4946 4947 CONECT 4944 4943 CONECT 4945 4943 CONECT 4946 4943 CONECT 4947 4943 CONECT 4948 4587 4588 4841 4844 CONECT 4948 4866 4887 5652 CONECT 4950 4942 CONECT 5235 4942 CONECT 5652 4948 MASTER 392 0 12 28 34 0 0 6 5911 2 133 52 END