HEADER TRANSLATION 09-SEP-25 9WPR TITLE SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF MOUSE HBS1L PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HBS1-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.5.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: HBS1L, HBS1, KIAA1038; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE GATEWAY CLONING VECTOR N-TERM 8XHIS SOURCE 7 PCELLFREE_G01; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1508209 KEYWDS HBS1L RIBOSOME RIBOSOME QUALITY CONTROL TRIGGER COMPLEX, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,N.HAYAMI,T.TERADA,M.INOUE,T.YABUKI,M.AOKI,E.SEKI,T.MATSUDA, AUTHOR 2 H.HIROTA,M.YOSHIDA,Y.MATSUO,Y.HAYASHIZAKI,M.TAKAHASHI,K.TSUDA, AUTHOR 3 T.NAGATA,A.TANAKA,N.KOBAYASHI,T.KIGAWA,P.GUNTERT,M.SHIROUZU, AUTHOR 4 S.YOKOYAMA,Y.MUTO,K.KUWASAKO,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 5 INITIATIVE (RSGI) REVDAT 2 17-JUN-26 9WPR 1 JRNL REVDAT 1 06-MAY-26 9WPR 0 JRNL AUTH N.NAMEKI,F.HE,M.OKADA,M.TAKAHASHI,K.TSUDA,T.NAGATA, JRNL AUTH 2 P.GUNTERT,N.KOBAYASHI,T.KIGAWA,M.SHIROUZU,A.TANAKA, JRNL AUTH 3 S.YOKOYAMA,Y.MUTO,K.KUWASAKO JRNL TITL SOLUTION STRUCTURE OF MOUSE HBS1L/SKI7-SPECIFIC UBA DOMAIN JRNL TITL 2 IN COMPLEX WITH UBIQUITIN: IMPLICATIONS FOR STALLED RIBOSOME JRNL TITL 3 RECOGNITION. JRNL REF PLOS ONE V. 21 48877 2026 JRNL REFN ESSN 1932-6203 JRNL PMID 42234679 JRNL DOI 10.1371/JOURNAL.PONE.0348877 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 24 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9WPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300062741. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 MOUSE HBS1L N-TERMINAL DOMAIN, REMARK 210 100 MM NACL, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 0.02 % NAN3, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C,15N-SEPARATED_NOESY; 3D REMARK 210 CBCA(CO)NH, 3D HNCCB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, KUJIRA 0.863, NMRVIEW REMARK 210 5.0.4, NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 6 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 12 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 13 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 19 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 8 -36.86 77.66 REMARK 500 1 PRO A 80 48.40 -88.53 REMARK 500 1 SER A 81 -98.96 -92.36 REMARK 500 2 SER A 5 147.22 81.52 REMARK 500 2 ASP A 76 65.07 -106.15 REMARK 500 3 SER A 2 -150.84 59.23 REMARK 500 3 SER A 20 -122.65 -152.37 REMARK 500 3 ASN A 23 -99.17 -120.90 REMARK 500 3 SER A 81 146.79 85.53 REMARK 500 4 ASP A 13 49.49 -88.10 REMARK 500 4 ASN A 19 48.99 -95.71 REMARK 500 4 LEU A 45 -73.42 -102.10 REMARK 500 4 PHE A 63 30.94 72.78 REMARK 500 5 GLU A 8 -73.55 -139.55 REMARK 500 6 ARG A 15 139.47 -178.41 REMARK 500 6 ASN A 19 44.63 -89.40 REMARK 500 6 LEU A 45 -107.61 -113.28 REMARK 500 7 SER A 6 -146.56 55.49 REMARK 500 8 TYR A 9 56.17 -91.07 REMARK 500 9 SER A 2 -145.53 55.94 REMARK 500 9 SER A 3 -136.25 52.70 REMARK 500 9 ARG A 15 14.77 -155.36 REMARK 500 9 SER A 78 169.85 75.21 REMARK 500 10 ASN A 23 -121.26 -93.57 REMARK 500 10 HIS A 24 -51.14 80.72 REMARK 500 11 SER A 78 -144.55 57.48 REMARK 500 12 LEU A 21 29.68 -154.92 REMARK 500 12 ASP A 47 20.60 -147.25 REMARK 500 14 SER A 5 -40.67 82.04 REMARK 500 14 ASP A 13 -90.49 -104.38 REMARK 500 14 GLU A 16 -108.48 -136.47 REMARK 500 14 SER A 78 -137.87 53.93 REMARK 500 15 ASN A 23 54.93 -99.17 REMARK 500 16 GLU A 8 -40.29 79.55 REMARK 500 16 TYR A 11 30.11 -154.01 REMARK 500 16 ARG A 15 9.03 -158.21 REMARK 500 16 LEU A 21 175.19 70.64 REMARK 500 16 LEU A 22 119.55 -167.44 REMARK 500 17 PHE A 63 30.23 71.63 REMARK 500 18 GLU A 16 -53.36 80.45 REMARK 500 18 SER A 17 159.18 75.42 REMARK 500 19 TYR A 11 133.46 -170.15 REMARK 500 19 ASN A 19 53.88 -152.05 REMARK 500 20 ASN A 23 41.19 -141.63 REMARK 500 20 LEU A 45 -106.30 -105.39 REMARK 500 20 ALA A 48 0.91 82.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 18 ARG A 15 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36786 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF MOUSE HBS1L PROTEIN DBREF 9WPR A 8 77 UNP Q69ZS7 HBS1L_MOUSE 51 120 SEQADV 9WPR GLY A 1 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR SER A 2 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR SER A 3 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR GLY A 4 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR SER A 5 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR SER A 6 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR GLY A 7 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR SER A 78 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR GLY A 79 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR PRO A 80 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR SER A 81 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR SER A 82 UNP Q69ZS7 EXPRESSION TAG SEQADV 9WPR GLY A 83 UNP Q69ZS7 EXPRESSION TAG SEQRES 1 A 83 GLY SER SER GLY SER SER GLY GLU TYR GLY TYR GLU ASP SEQRES 2 A 83 LEU ARG GLU SER SER ASN SER LEU LEU ASN HIS GLN LEU SEQRES 3 A 83 SER GLU ILE ASP GLN ALA ARG LEU TYR SER CYS LEU ASP SEQRES 4 A 83 HIS MET ARG GLU VAL LEU GLY ASP ALA VAL PRO ASP ASP SEQRES 5 A 83 ILE LEU THR GLU ALA ILE LEU LYS HIS LYS PHE ASP VAL SEQRES 6 A 83 GLN LYS ALA LEU SER VAL VAL LEU GLU GLN ASP GLY SER SEQRES 7 A 83 GLY PRO SER SER GLY HELIX 1 AA1 SER A 27 GLY A 46 1 20 HELIX 2 AA2 PRO A 50 HIS A 61 1 12 HELIX 3 AA3 ASP A 64 ASP A 76 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 190 0 0 3 0 0 0 6 629 1 0 7 END