HEADER VIRAL PROTEIN 11-SEP-25 9WQQ TITLE TOMATO GREEN MOTTLE MOSAIC VIRUS (TOMMV) COAT PROTEIN SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOMATO MOTTLE MOSAIC VIRUS; SOURCE 3 ORGANISM_TAXID: 1391702; SOURCE 4 EXPRESSION_SYSTEM: SOLANUM LYCOPERSICUM; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4081 KEYWDS HELICAL, RNA VIRUS, VIRUS, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.CHATTERJEE,A.VENKATASUBRAMANIAN,P.MAZUMDAR,S.K.SINGH,U.DAS,A.ROY, AUTHOR 2 B.MANDAL,P.P.DATTA REVDAT 1 16-SEP-26 9WQQ 0 JRNL AUTH A.CHATTERJEE,A.VENKATASUBRAMANIAN,P.MAZUMDAR,A.ROY, JRNL AUTH 2 S.K.SINGH,U.DAS,B.MANDAL,P.P.DATTA JRNL TITL TOMATO GREEN MOTTLE MOSAIC VIRUS (TOMMV) COAT PROTEIN JRNL TITL 2 SUBUNIT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.710 REMARK 3 NUMBER OF PARTICLES : 14598 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9WQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300059050. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : TOMATO MOTTLE MOSAIC VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.50 REMARK 245 SAMPLE DETAILS : ISOLATED FROM INFECTED TOMATO REMARK 245 LEAVE SAMPLES REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3930.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : 81000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 112A REMARK 465 SER A 155 REMARK 465 ALA A 156 REMARK 465 PRO A 157 REMARK 465 ALA A 158 REMARK 465 SER A 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 32.59 -142.38 REMARK 500 ASN A 99 6.59 -69.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-63082 RELATED DB: EMDB DBREF 9WQQ A 1 159 UNP T1WEZ3 T1WEZ3_9VIRU 1 159 SEQRES 1 A 159 MET SER TYR ALA ILE THR SER PRO SER GLN PHE VAL PHE SEQRES 2 A 159 LEU SER SER ALA TRP ALA ASP PRO VAL GLU LEU ILE ASN SEQRES 3 A 159 ILE CYS THR ASN SER LEU GLY ASN GLN PHE GLN THR GLN SEQRES 4 A 159 GLN ALA ARG THR THR VAL GLN GLN GLN PHE SER GLU VAL SEQRES 5 A 159 TRP LYS PRO PHE PRO GLN SER THR VAL ARG PHE PRO ASP SEQRES 6 A 159 ASN VAL PHE LYS VAL TYR ARG TYR ASN ALA VAL ILE ASP SEQRES 7 A 159 PRO LEU ILE THR ALA LEU LEU GLY THR PHE ASP THR ARG SEQRES 8 A 159 ASN ARG ILE ILE GLU VAL GLU ASN GLN GLN SER PRO THR SEQRES 9 A 159 THR ALA GLU THR LEU ASP ALA THR ARG ARG VAL ASP ASP SEQRES 10 A 159 ALA THR VAL ALA ILE ARG SER ALA VAL ASN ASN LEU VAL SEQRES 11 A 159 ASN GLU LEU VAL ARG GLY THR GLY PHE TYR ASN GLN SER SEQRES 12 A 159 THR PHE GLU SER MET SER GLY LEU ALA TRP THR SER ALA SEQRES 13 A 159 PRO ALA SER HELIX 1 AA1 SER A 7 SER A 15 5 9 HELIX 2 AA2 ASP A 20 SER A 31 1 12 HELIX 3 AA3 LEU A 32 ASN A 34 5 3 HELIX 4 AA4 THR A 38 GLU A 51 1 14 HELIX 5 AA5 ILE A 77 THR A 87 1 11 HELIX 6 AA6 ARG A 93 GLU A 98 1 6 HELIX 7 AA7 THR A 104 THR A 112 1 9 HELIX 8 AA8 VAL A 115 ARG A 135 1 21 HELIX 9 AA9 ASN A 141 GLY A 150 1 10 SHEET 1 AA1 3 TRP A 18 ALA A 19 0 SHEET 2 AA1 3 LYS A 69 TYR A 71 -1 O VAL A 70 N ALA A 19 SHEET 3 AA1 3 PHE A 139 TYR A 140 -1 O TYR A 140 N LYS A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 130 0 0 9 3 0 0 6 1197 1 0 13 END