HEADER ISOMERASE 11-SEP-25 9WQU TITLE B-B' DOMAIN FRAGMENT OF ER-60 (ERP57) UNDER MICROGRAVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A3; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 58 KDA GLUCOSE-REGULATED PROTEIN,58 KDA MICROSOMAL PROTEIN, COMPND 5 P58,DISULFIDE ISOMERASE ER-60,ENDOPLASMIC RETICULUM RESIDENT PROTEIN COMPND 6 57,ER PROTEIN 57,ERP57,ENDOPLASMIC RETICULUM RESIDENT PROTEIN 60,ER COMPND 7 PROTEIN 60,ERP60; COMPND 8 EC: 5.3.4.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDIA3, ERP57, ERP60, GRP58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THIOREDOXIN FOLD, ENDOPLASMIC RETICULUM, OXIDATIVE PROTEIN FOLDING, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.FURUBAYASHI,Y.SHINOHARA,K.INAKA,S.KAITO,Y.KOBAYASHI,M.KAMO,R.URADE REVDAT 1 01-OCT-25 9WQU 0 JRNL AUTH N.FURUBAYASHI,Y.SHINOHARA,K.INAKA,S.KAITO,Y.KOBAYASHI, JRNL AUTH 2 M.KAMO,R.URADE JRNL TITL CRYSTAL STRUCTURE OF B-B' DOMAIN FRAGMENT OF ER-60 (ERP57) JRNL TITL 2 UNDER MICROGRAVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 78026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 298 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 534 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.18000 REMARK 3 B22 (A**2) : -7.97000 REMARK 3 B33 (A**2) : 0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.765 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5805 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7793 ; 2.035 ; 1.841 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 698 ; 6.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 33 ; 7.141 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1057 ;13.140 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4415 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2795 ; 3.606 ; 3.271 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3489 ; 4.529 ; 5.861 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3010 ; 4.618 ; 3.643 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8984 ; 7.492 ;42.120 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9WQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300063582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.75 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 90.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.840 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2H8L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES-NAOH, PH 7.0, 20% PEG3350, REMARK 280 50 MM AMMONIUM SULFATE, 100 M M NACL, 0.04% NAN3, COUNTER- REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.45050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 129 REMARK 465 PRO A 130 REMARK 465 LEU A 131 REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 SER A 367 REMARK 465 GLU A 368 REMARK 465 PRO A 369 REMARK 465 ILE A 370 REMARK 465 PRO A 371 REMARK 465 GLU A 372 REMARK 465 SER A 373 REMARK 465 ASN A 374 REMARK 465 ASP A 375 REMARK 465 GLY A 376 REMARK 465 ALA A 377 REMARK 465 ALA A 378 REMARK 465 ALA A 379 REMARK 465 SER A 380 REMARK 465 GLY B 129 REMARK 465 PRO B 130 REMARK 465 LEU B 131 REMARK 465 GLY B 132 REMARK 465 SER B 367 REMARK 465 GLU B 368 REMARK 465 PRO B 369 REMARK 465 ILE B 370 REMARK 465 PRO B 371 REMARK 465 GLU B 372 REMARK 465 SER B 373 REMARK 465 ASN B 374 REMARK 465 ASP B 375 REMARK 465 GLY B 376 REMARK 465 ALA B 377 REMARK 465 ALA B 378 REMARK 465 ALA B 379 REMARK 465 SER B 380 REMARK 465 GLY C 129 REMARK 465 PRO C 130 REMARK 465 LEU C 131 REMARK 465 GLY C 132 REMARK 465 SER C 133 REMARK 465 LYS C 366 REMARK 465 SER C 367 REMARK 465 GLU C 368 REMARK 465 PRO C 369 REMARK 465 ILE C 370 REMARK 465 PRO C 371 REMARK 465 GLU C 372 REMARK 465 SER C 373 REMARK 465 ASN C 374 REMARK 465 ASP C 375 REMARK 465 GLY C 376 REMARK 465 ALA C 377 REMARK 465 ALA C 378 REMARK 465 ALA C 379 REMARK 465 SER C 380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 140 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP A 161 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 ASP B 217 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 LYS B 258 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 LYS C 146 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG C 304 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG C 304 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 304 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 201 86.01 -159.58 REMARK 500 CYS A 244 79.33 -158.83 REMARK 500 TYR A 265 -166.76 -165.54 REMARK 500 ASP A 268 105.34 -174.19 REMARK 500 ASN A 272 45.82 -141.20 REMARK 500 LEU A 297 138.87 -170.89 REMARK 500 TYR B 265 -160.33 -162.38 REMARK 500 ASP B 268 107.90 -168.32 REMARK 500 ASN B 272 48.69 -141.69 REMARK 500 LYS B 332 -71.14 -52.03 REMARK 500 GLU C 201 87.71 -151.62 REMARK 500 TYR C 265 -153.95 -160.87 REMARK 500 ASP C 268 105.04 -171.89 REMARK 500 ASN C 272 51.38 -145.59 REMARK 500 ALA C 293 45.22 -93.45 REMARK 500 HIS C 295 151.25 -46.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 304 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 684 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH C 570 DISTANCE = 5.92 ANGSTROMS DBREF 9WQU A 134 376 UNP P30101 PDIA3_HUMAN 134 376 DBREF 9WQU B 134 376 UNP P30101 PDIA3_HUMAN 134 376 DBREF 9WQU C 134 376 UNP P30101 PDIA3_HUMAN 134 376 SEQADV 9WQU GLY A 129 UNP P30101 EXPRESSION TAG SEQADV 9WQU PRO A 130 UNP P30101 EXPRESSION TAG SEQADV 9WQU LEU A 131 UNP P30101 EXPRESSION TAG SEQADV 9WQU GLY A 132 UNP P30101 EXPRESSION TAG SEQADV 9WQU SER A 133 UNP P30101 EXPRESSION TAG SEQADV 9WQU ALA A 377 UNP P30101 CLONING ARTIFACT SEQADV 9WQU ALA A 378 UNP P30101 CLONING ARTIFACT SEQADV 9WQU ALA A 379 UNP P30101 CLONING ARTIFACT SEQADV 9WQU SER A 380 UNP P30101 CLONING ARTIFACT SEQADV 9WQU GLY B 129 UNP P30101 EXPRESSION TAG SEQADV 9WQU PRO B 130 UNP P30101 EXPRESSION TAG SEQADV 9WQU LEU B 131 UNP P30101 EXPRESSION TAG SEQADV 9WQU GLY B 132 UNP P30101 EXPRESSION TAG SEQADV 9WQU SER B 133 UNP P30101 EXPRESSION TAG SEQADV 9WQU ALA B 377 UNP P30101 CLONING ARTIFACT SEQADV 9WQU ALA B 378 UNP P30101 CLONING ARTIFACT SEQADV 9WQU ALA B 379 UNP P30101 CLONING ARTIFACT SEQADV 9WQU SER B 380 UNP P30101 CLONING ARTIFACT SEQADV 9WQU GLY C 129 UNP P30101 EXPRESSION TAG SEQADV 9WQU PRO C 130 UNP P30101 EXPRESSION TAG SEQADV 9WQU LEU C 131 UNP P30101 EXPRESSION TAG SEQADV 9WQU GLY C 132 UNP P30101 EXPRESSION TAG SEQADV 9WQU SER C 133 UNP P30101 EXPRESSION TAG SEQADV 9WQU ALA C 377 UNP P30101 CLONING ARTIFACT SEQADV 9WQU ALA C 378 UNP P30101 CLONING ARTIFACT SEQADV 9WQU ALA C 379 UNP P30101 CLONING ARTIFACT SEQADV 9WQU SER C 380 UNP P30101 CLONING ARTIFACT SEQRES 1 A 252 GLY PRO LEU GLY SER PRO ALA SER VAL PRO LEU ARG THR SEQRES 2 A 252 GLU GLU GLU PHE LYS LYS PHE ILE SER ASP LYS ASP ALA SEQRES 3 A 252 SER ILE VAL GLY PHE PHE ASP ASP SER PHE SER GLU ALA SEQRES 4 A 252 HIS SER GLU PHE LEU LYS ALA ALA SER ASN LEU ARG ASP SEQRES 5 A 252 ASN TYR ARG PHE ALA HIS THR ASN VAL GLU SER LEU VAL SEQRES 6 A 252 ASN GLU TYR ASP ASP ASN GLY GLU GLY ILE ILE LEU PHE SEQRES 7 A 252 ARG PRO SER HIS LEU THR ASN LYS PHE GLU ASP LYS THR SEQRES 8 A 252 VAL ALA TYR THR GLU GLN LYS MET THR SER GLY LYS ILE SEQRES 9 A 252 LYS LYS PHE ILE GLN GLU ASN ILE PHE GLY ILE CYS PRO SEQRES 10 A 252 HIS MET THR GLU ASP ASN LYS ASP LEU ILE GLN GLY LYS SEQRES 11 A 252 ASP LEU LEU ILE ALA TYR TYR ASP VAL ASP TYR GLU LYS SEQRES 12 A 252 ASN ALA LYS GLY SER ASN TYR TRP ARG ASN ARG VAL MET SEQRES 13 A 252 MET VAL ALA LYS LYS PHE LEU ASP ALA GLY HIS LYS LEU SEQRES 14 A 252 ASN PHE ALA VAL ALA SER ARG LYS THR PHE SER HIS GLU SEQRES 15 A 252 LEU SER ASP PHE GLY LEU GLU SER THR ALA GLY GLU ILE SEQRES 16 A 252 PRO VAL VAL ALA ILE ARG THR ALA LYS GLY GLU LYS PHE SEQRES 17 A 252 VAL MET GLN GLU GLU PHE SER ARG ASP GLY LYS ALA LEU SEQRES 18 A 252 GLU ARG PHE LEU GLN ASP TYR PHE ASP GLY ASN LEU LYS SEQRES 19 A 252 ARG TYR LEU LYS SER GLU PRO ILE PRO GLU SER ASN ASP SEQRES 20 A 252 GLY ALA ALA ALA SER SEQRES 1 B 252 GLY PRO LEU GLY SER PRO ALA SER VAL PRO LEU ARG THR SEQRES 2 B 252 GLU GLU GLU PHE LYS LYS PHE ILE SER ASP LYS ASP ALA SEQRES 3 B 252 SER ILE VAL GLY PHE PHE ASP ASP SER PHE SER GLU ALA SEQRES 4 B 252 HIS SER GLU PHE LEU LYS ALA ALA SER ASN LEU ARG ASP SEQRES 5 B 252 ASN TYR ARG PHE ALA HIS THR ASN VAL GLU SER LEU VAL SEQRES 6 B 252 ASN GLU TYR ASP ASP ASN GLY GLU GLY ILE ILE LEU PHE SEQRES 7 B 252 ARG PRO SER HIS LEU THR ASN LYS PHE GLU ASP LYS THR SEQRES 8 B 252 VAL ALA TYR THR GLU GLN LYS MET THR SER GLY LYS ILE SEQRES 9 B 252 LYS LYS PHE ILE GLN GLU ASN ILE PHE GLY ILE CYS PRO SEQRES 10 B 252 HIS MET THR GLU ASP ASN LYS ASP LEU ILE GLN GLY LYS SEQRES 11 B 252 ASP LEU LEU ILE ALA TYR TYR ASP VAL ASP TYR GLU LYS SEQRES 12 B 252 ASN ALA LYS GLY SER ASN TYR TRP ARG ASN ARG VAL MET SEQRES 13 B 252 MET VAL ALA LYS LYS PHE LEU ASP ALA GLY HIS LYS LEU SEQRES 14 B 252 ASN PHE ALA VAL ALA SER ARG LYS THR PHE SER HIS GLU SEQRES 15 B 252 LEU SER ASP PHE GLY LEU GLU SER THR ALA GLY GLU ILE SEQRES 16 B 252 PRO VAL VAL ALA ILE ARG THR ALA LYS GLY GLU LYS PHE SEQRES 17 B 252 VAL MET GLN GLU GLU PHE SER ARG ASP GLY LYS ALA LEU SEQRES 18 B 252 GLU ARG PHE LEU GLN ASP TYR PHE ASP GLY ASN LEU LYS SEQRES 19 B 252 ARG TYR LEU LYS SER GLU PRO ILE PRO GLU SER ASN ASP SEQRES 20 B 252 GLY ALA ALA ALA SER SEQRES 1 C 252 GLY PRO LEU GLY SER PRO ALA SER VAL PRO LEU ARG THR SEQRES 2 C 252 GLU GLU GLU PHE LYS LYS PHE ILE SER ASP LYS ASP ALA SEQRES 3 C 252 SER ILE VAL GLY PHE PHE ASP ASP SER PHE SER GLU ALA SEQRES 4 C 252 HIS SER GLU PHE LEU LYS ALA ALA SER ASN LEU ARG ASP SEQRES 5 C 252 ASN TYR ARG PHE ALA HIS THR ASN VAL GLU SER LEU VAL SEQRES 6 C 252 ASN GLU TYR ASP ASP ASN GLY GLU GLY ILE ILE LEU PHE SEQRES 7 C 252 ARG PRO SER HIS LEU THR ASN LYS PHE GLU ASP LYS THR SEQRES 8 C 252 VAL ALA TYR THR GLU GLN LYS MET THR SER GLY LYS ILE SEQRES 9 C 252 LYS LYS PHE ILE GLN GLU ASN ILE PHE GLY ILE CYS PRO SEQRES 10 C 252 HIS MET THR GLU ASP ASN LYS ASP LEU ILE GLN GLY LYS SEQRES 11 C 252 ASP LEU LEU ILE ALA TYR TYR ASP VAL ASP TYR GLU LYS SEQRES 12 C 252 ASN ALA LYS GLY SER ASN TYR TRP ARG ASN ARG VAL MET SEQRES 13 C 252 MET VAL ALA LYS LYS PHE LEU ASP ALA GLY HIS LYS LEU SEQRES 14 C 252 ASN PHE ALA VAL ALA SER ARG LYS THR PHE SER HIS GLU SEQRES 15 C 252 LEU SER ASP PHE GLY LEU GLU SER THR ALA GLY GLU ILE SEQRES 16 C 252 PRO VAL VAL ALA ILE ARG THR ALA LYS GLY GLU LYS PHE SEQRES 17 C 252 VAL MET GLN GLU GLU PHE SER ARG ASP GLY LYS ALA LEU SEQRES 18 C 252 GLU ARG PHE LEU GLN ASP TYR PHE ASP GLY ASN LEU LYS SEQRES 19 C 252 ARG TYR LEU LYS SER GLU PRO ILE PRO GLU SER ASN ASP SEQRES 20 C 252 GLY ALA ALA ALA SER HET SO4 A 401 5 HET SO4 B 401 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *534(H2 O) HELIX 1 AA1 THR A 141 ILE A 149 1 9 HELIX 2 AA2 SER A 165 ARG A 179 1 15 HELIX 3 AA3 VAL A 189 ASP A 197 1 9 HELIX 4 AA4 PRO A 208 THR A 212 5 5 HELIX 5 AA5 THR A 228 ILE A 240 1 13 HELIX 6 AA6 ASN A 251 GLN A 256 1 6 HELIX 7 AA7 ASN A 272 ALA A 293 1 22 HELIX 8 AA8 PHE A 307 ASP A 313 1 7 HELIX 9 AA9 GLY A 346 GLY A 359 1 14 HELIX 10 AB1 THR B 141 SER B 150 1 10 HELIX 11 AB2 SER B 165 ARG B 179 1 15 HELIX 12 AB3 VAL B 189 ASP B 197 1 9 HELIX 13 AB4 PRO B 208 THR B 212 5 5 HELIX 14 AB5 THR B 228 ILE B 240 1 13 HELIX 15 AB6 ASN B 251 GLN B 256 1 6 HELIX 16 AB7 ASN B 272 ALA B 293 1 22 HELIX 17 AB8 PHE B 307 ASP B 313 1 7 HELIX 18 AB9 GLY B 346 GLY B 359 1 14 HELIX 19 AC1 THR C 141 SER C 150 1 10 HELIX 20 AC2 SER C 165 ARG C 179 1 15 HELIX 21 AC3 VAL C 189 ASP C 197 1 9 HELIX 22 AC4 PRO C 208 THR C 212 5 5 HELIX 23 AC5 THR C 228 ILE C 240 1 13 HELIX 24 AC6 ASN C 251 GLN C 256 1 6 HELIX 25 AC7 ASN C 272 ALA C 293 1 22 HELIX 26 AC8 PHE C 307 PHE C 314 1 8 HELIX 27 AC9 GLY C 346 GLY C 359 1 14 SHEET 1 AA1 5 VAL A 137 PRO A 138 0 SHEET 2 AA1 5 PHE A 184 THR A 187 1 O HIS A 186 N VAL A 137 SHEET 3 AA1 5 SER A 155 PHE A 160 1 N PHE A 160 O THR A 187 SHEET 4 AA1 5 GLU A 201 PHE A 206 -1 O PHE A 206 N SER A 155 SHEET 5 AA1 5 THR A 219 ALA A 221 -1 O VAL A 220 N LEU A 205 SHEET 1 AA2 5 HIS A 246 MET A 247 0 SHEET 2 AA2 5 ASN A 298 SER A 303 1 O VAL A 301 N MET A 247 SHEET 3 AA2 5 LEU A 260 TYR A 265 1 N LEU A 261 O ASN A 298 SHEET 4 AA2 5 VAL A 325 ARG A 329 -1 O VAL A 325 N TYR A 264 SHEET 5 AA2 5 LYS A 335 VAL A 337 -1 O PHE A 336 N ILE A 328 SHEET 1 AA3 5 SER B 136 LEU B 139 0 SHEET 2 AA3 5 PHE B 184 THR B 187 1 O HIS B 186 N LEU B 139 SHEET 3 AA3 5 SER B 155 PHE B 160 1 N GLY B 158 O ALA B 185 SHEET 4 AA3 5 GLU B 201 PHE B 206 -1 O GLY B 202 N PHE B 159 SHEET 5 AA3 5 THR B 219 ALA B 221 -1 O VAL B 220 N LEU B 205 SHEET 1 AA4 4 ASN B 298 SER B 303 0 SHEET 2 AA4 4 LEU B 260 TYR B 265 1 N LEU B 261 O ASN B 298 SHEET 3 AA4 4 VAL B 325 ARG B 329 -1 O VAL B 325 N TYR B 264 SHEET 4 AA4 4 LYS B 335 VAL B 337 -1 O PHE B 336 N ILE B 328 SHEET 1 AA5 5 VAL C 137 PRO C 138 0 SHEET 2 AA5 5 PHE C 184 THR C 187 1 O HIS C 186 N VAL C 137 SHEET 3 AA5 5 SER C 155 PHE C 160 1 N GLY C 158 O THR C 187 SHEET 4 AA5 5 GLU C 201 PHE C 206 -1 O GLY C 202 N PHE C 159 SHEET 5 AA5 5 THR C 219 ALA C 221 -1 O VAL C 220 N LEU C 205 SHEET 1 AA6 4 ASN C 298 SER C 303 0 SHEET 2 AA6 4 LEU C 260 TYR C 265 1 N LEU C 261 O ASN C 298 SHEET 3 AA6 4 VAL C 325 ARG C 329 -1 O VAL C 325 N TYR C 264 SHEET 4 AA6 4 LYS C 335 VAL C 337 -1 O PHE C 336 N ILE C 328 CRYST1 74.315 62.901 97.148 90.00 98.64 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013456 0.000000 0.002046 0.00000 SCALE2 0.000000 0.015898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010412 0.00000 CONECT 5680 5681 5682 5683 5684 CONECT 5681 5680 CONECT 5682 5680 CONECT 5683 5680 CONECT 5684 5680 CONECT 5685 5686 5687 5688 5689 CONECT 5686 5685 CONECT 5687 5685 CONECT 5688 5685 CONECT 5689 5685 MASTER 395 0 2 27 28 0 0 6 6217 3 10 60 END