HEADER PROTEIN BINDING 12-SEP-25 9WRI TITLE CRYSTAL STRUCTURE OF CTBP2 IN COMPLEX WITH G9A COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL-BINDING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CTBP2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE EHMT2; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: EUCHROMATIC HISTONE-LYSINE N-METHYLTRANSFERASE 2,HLA-B- COMPND 10 ASSOCIATED TRANSCRIPT 8,HISTONE H3-K9 METHYLTRANSFERASE 3,H3-K9- COMPND 11 HMTASE 3,LYSINE N-METHYLTRANSFERASE 1C,PROTEIN G9A; COMPND 12 EC: 2.1.1.-,2.1.1.367; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHANG,J.JIANG,W.SUN,Q.CAI,S.CHEN REVDAT 1 21-JAN-26 9WRI 0 JRNL AUTH B.ZHANG,J.JIANG,W.SUN,S.HU,P.CHEN,L.LI,M.JIANG,J.CHEN, JRNL AUTH 2 J.ZENG,D.CAI,Q.LUO,W.LIU,Q.CAI,S.CHEN JRNL TITL CTBP1/2 OLIGOMERIZATION PROMOTES G9A-MEDIATED JRNL TITL 2 TRANSCRIPTIONAL REPRESSION. JRNL REF J.BIOL.CHEM. V. 302 11063 2025 JRNL REFN ESSN 1083-351X JRNL PMID 41419197 JRNL DOI 10.1016/J.JBC.2025.111063 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 68146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4941 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 277 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : -0.16000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5466 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5178 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7416 ; 1.597 ; 1.826 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11865 ; 0.545 ; 1.760 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 675 ; 6.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ; 9.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 918 ;11.840 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6522 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1290 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2709 ; 2.831 ; 2.985 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2709 ; 2.829 ; 2.985 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3381 ; 3.732 ; 5.354 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3382 ; 3.732 ; 5.355 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2757 ; 4.322 ; 3.534 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2756 ; 4.312 ; 3.531 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4036 ; 6.708 ; 6.250 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 23607 ; 8.259 ;37.740 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 22990 ; 8.210 ;37.240 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9WRI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 17-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300063679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91990 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71788 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 6% PVP, 30% REMARK 280 PENTAERYTHRITOL ETHOXYLATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 89.06300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.42055 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.27767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 89.06300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 51.42055 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.27767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 89.06300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 51.42055 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.27767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 89.06300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 51.42055 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.27767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 89.06300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 51.42055 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 46.27767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 89.06300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 51.42055 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.27767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 102.84109 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 92.55533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 102.84109 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 92.55533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 102.84109 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 92.55533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 102.84109 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 92.55533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 102.84109 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 92.55533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 102.84109 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 92.55533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 89.06300 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 51.42055 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.27767 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 739 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 659 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 364 REMARK 465 VAL B 363 REMARK 465 THR B 364 REMARK 465 ASN C 881 REMARK 465 LYS C 882 REMARK 465 GLU C 883 REMARK 465 GLY C 884 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 623 O HOH A 729 2.11 REMARK 500 O HOH B 601 O HOH B 792 2.15 REMARK 500 O HOH B 658 O HOH B 729 2.18 REMARK 500 O HOH A 514 O HOH A 558 2.19 REMARK 500 O HOH A 710 O HOH A 790 2.19 REMARK 500 NH1 ARG B 161 OE1 GLN B 163 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 148 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 148 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG B 148 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 MET B 333 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 128 28.48 -143.64 REMARK 500 HIS A 242 33.87 -141.26 REMARK 500 ALA A 271 -88.86 -96.49 REMARK 500 TYR B 82 -158.94 -92.95 REMARK 500 SER B 128 23.67 -142.27 REMARK 500 HIS B 242 31.42 -140.71 REMARK 500 ALA B 271 -94.46 -100.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 42 0.09 SIDE CHAIN REMARK 500 ARG B 99 0.13 SIDE CHAIN REMARK 500 ARG B 148 0.09 SIDE CHAIN REMARK 500 ARG B 161 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 829 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 830 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH B 816 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 817 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B 818 DISTANCE = 6.87 ANGSTROMS DBREF 9WRI A 31 364 UNP P56545 CTBP2_HUMAN 31 364 DBREF 9WRI B 31 364 UNP P56545 CTBP2_HUMAN 31 364 DBREF 9WRI C 881 893 UNP Q96KQ7 EHMT2_HUMAN 881 893 SEQADV 9WRI SER A 29 UNP P56545 EXPRESSION TAG SEQADV 9WRI MET A 30 UNP P56545 EXPRESSION TAG SEQADV 9WRI SER B 29 UNP P56545 EXPRESSION TAG SEQADV 9WRI MET B 30 UNP P56545 EXPRESSION TAG SEQRES 1 A 336 SER MET HIS PRO ARG PRO LEU VAL ALA LEU LEU ASP GLY SEQRES 2 A 336 ARG ASP CYS THR VAL GLU MET PRO ILE LEU LYS ASP LEU SEQRES 3 A 336 ALA THR VAL ALA PHE CYS ASP ALA GLN SER THR GLN GLU SEQRES 4 A 336 ILE HIS GLU LYS VAL LEU ASN GLU ALA VAL GLY ALA MET SEQRES 5 A 336 MET TYR HIS THR ILE THR LEU THR ARG GLU ASP LEU GLU SEQRES 6 A 336 LYS PHE LYS ALA LEU ARG VAL ILE VAL ARG ILE GLY SER SEQRES 7 A 336 GLY TYR ASP ASN VAL ASP ILE LYS ALA ALA GLY GLU LEU SEQRES 8 A 336 GLY ILE ALA VAL CYS ASN ILE PRO SER ALA ALA VAL GLU SEQRES 9 A 336 GLU THR ALA ASP SER THR ILE CYS HIS ILE LEU ASN LEU SEQRES 10 A 336 TYR ARG ARG ASN THR TRP LEU TYR GLN ALA LEU ARG GLU SEQRES 11 A 336 GLY THR ARG VAL GLN SER VAL GLU GLN ILE ARG GLU VAL SEQRES 12 A 336 ALA SER GLY ALA ALA ARG ILE ARG GLY GLU THR LEU GLY SEQRES 13 A 336 LEU ILE GLY PHE GLY ARG THR GLY GLN ALA VAL ALA VAL SEQRES 14 A 336 ARG ALA LYS ALA PHE GLY PHE SER VAL ILE PHE TYR ASP SEQRES 15 A 336 PRO TYR LEU GLN ASP GLY ILE GLU ARG SER LEU GLY VAL SEQRES 16 A 336 GLN ARG VAL TYR THR LEU GLN ASP LEU LEU TYR GLN SER SEQRES 17 A 336 ASP CYS VAL SER LEU HIS CYS ASN LEU ASN GLU HIS ASN SEQRES 18 A 336 HIS HIS LEU ILE ASN ASP PHE THR ILE LYS GLN MET ARG SEQRES 19 A 336 GLN GLY ALA PHE LEU VAL ASN ALA ALA ARG GLY GLY LEU SEQRES 20 A 336 VAL ASP GLU LYS ALA LEU ALA GLN ALA LEU LYS GLU GLY SEQRES 21 A 336 ARG ILE ARG GLY ALA ALA LEU ASP VAL HIS GLU SER GLU SEQRES 22 A 336 PRO PHE SER PHE ALA GLN GLY PRO LEU LYS ASP ALA PRO SEQRES 23 A 336 ASN LEU ILE CYS THR PRO HIS THR ALA TRP TYR SER GLU SEQRES 24 A 336 GLN ALA SER LEU GLU MET ARG GLU ALA ALA ALA THR GLU SEQRES 25 A 336 ILE ARG ARG ALA ILE THR GLY ARG ILE PRO GLU SER LEU SEQRES 26 A 336 ARG ASN CYS VAL ASN LYS GLU PHE PHE VAL THR SEQRES 1 B 336 SER MET HIS PRO ARG PRO LEU VAL ALA LEU LEU ASP GLY SEQRES 2 B 336 ARG ASP CYS THR VAL GLU MET PRO ILE LEU LYS ASP LEU SEQRES 3 B 336 ALA THR VAL ALA PHE CYS ASP ALA GLN SER THR GLN GLU SEQRES 4 B 336 ILE HIS GLU LYS VAL LEU ASN GLU ALA VAL GLY ALA MET SEQRES 5 B 336 MET TYR HIS THR ILE THR LEU THR ARG GLU ASP LEU GLU SEQRES 6 B 336 LYS PHE LYS ALA LEU ARG VAL ILE VAL ARG ILE GLY SER SEQRES 7 B 336 GLY TYR ASP ASN VAL ASP ILE LYS ALA ALA GLY GLU LEU SEQRES 8 B 336 GLY ILE ALA VAL CYS ASN ILE PRO SER ALA ALA VAL GLU SEQRES 9 B 336 GLU THR ALA ASP SER THR ILE CYS HIS ILE LEU ASN LEU SEQRES 10 B 336 TYR ARG ARG ASN THR TRP LEU TYR GLN ALA LEU ARG GLU SEQRES 11 B 336 GLY THR ARG VAL GLN SER VAL GLU GLN ILE ARG GLU VAL SEQRES 12 B 336 ALA SER GLY ALA ALA ARG ILE ARG GLY GLU THR LEU GLY SEQRES 13 B 336 LEU ILE GLY PHE GLY ARG THR GLY GLN ALA VAL ALA VAL SEQRES 14 B 336 ARG ALA LYS ALA PHE GLY PHE SER VAL ILE PHE TYR ASP SEQRES 15 B 336 PRO TYR LEU GLN ASP GLY ILE GLU ARG SER LEU GLY VAL SEQRES 16 B 336 GLN ARG VAL TYR THR LEU GLN ASP LEU LEU TYR GLN SER SEQRES 17 B 336 ASP CYS VAL SER LEU HIS CYS ASN LEU ASN GLU HIS ASN SEQRES 18 B 336 HIS HIS LEU ILE ASN ASP PHE THR ILE LYS GLN MET ARG SEQRES 19 B 336 GLN GLY ALA PHE LEU VAL ASN ALA ALA ARG GLY GLY LEU SEQRES 20 B 336 VAL ASP GLU LYS ALA LEU ALA GLN ALA LEU LYS GLU GLY SEQRES 21 B 336 ARG ILE ARG GLY ALA ALA LEU ASP VAL HIS GLU SER GLU SEQRES 22 B 336 PRO PHE SER PHE ALA GLN GLY PRO LEU LYS ASP ALA PRO SEQRES 23 B 336 ASN LEU ILE CYS THR PRO HIS THR ALA TRP TYR SER GLU SEQRES 24 B 336 GLN ALA SER LEU GLU MET ARG GLU ALA ALA ALA THR GLU SEQRES 25 B 336 ILE ARG ARG ALA ILE THR GLY ARG ILE PRO GLU SER LEU SEQRES 26 B 336 ARG ASN CYS VAL ASN LYS GLU PHE PHE VAL THR SEQRES 1 C 13 ASN LYS GLU GLY ASP THR ALA TRP ASP LEU THR PRO GLU HET NAD A 401 44 HET NAD B 401 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 HOH *660(H2 O) HELIX 1 AA1 GLU A 47 LYS A 52 1 6 HELIX 2 AA2 SER A 64 ILE A 68 5 5 HELIX 3 AA3 HIS A 69 GLU A 75 1 7 HELIX 4 AA4 THR A 88 LYS A 94 1 7 HELIX 5 AA5 ASP A 112 LEU A 119 1 8 HELIX 6 AA6 ALA A 130 ARG A 148 1 19 HELIX 7 AA7 ARG A 148 GLU A 158 1 11 HELIX 8 AA8 SER A 164 ALA A 172 1 9 HELIX 9 AA9 GLY A 189 LYS A 200 1 12 HELIX 10 AB1 ALA A 201 GLY A 203 5 3 HELIX 11 AB2 GLY A 216 LEU A 221 1 6 HELIX 12 AB3 THR A 228 SER A 236 1 9 HELIX 13 AB4 ASN A 254 LYS A 259 1 6 HELIX 14 AB5 ARG A 272 VAL A 276 5 5 HELIX 15 AB6 ASP A 277 GLU A 287 1 11 HELIX 16 AB7 SER A 326 GLY A 347 1 22 HELIX 17 AB8 GLU B 47 LYS B 52 1 6 HELIX 18 AB9 SER B 64 ILE B 68 5 5 HELIX 19 AC1 HIS B 69 GLU B 75 1 7 HELIX 20 AC2 THR B 88 LYS B 94 1 7 HELIX 21 AC3 ASP B 112 LEU B 119 1 8 HELIX 22 AC4 ALA B 130 ARG B 148 1 19 HELIX 23 AC5 ARG B 148 GLU B 158 1 11 HELIX 24 AC6 SER B 164 ALA B 172 1 9 HELIX 25 AC7 GLY B 189 LYS B 200 1 12 HELIX 26 AC8 ALA B 201 GLY B 203 5 3 HELIX 27 AC9 GLY B 216 LEU B 221 1 6 HELIX 28 AD1 THR B 228 SER B 236 1 9 HELIX 29 AD2 ASN B 254 LYS B 259 1 6 HELIX 30 AD3 ARG B 272 VAL B 276 5 5 HELIX 31 AD4 ASP B 277 GLU B 287 1 11 HELIX 32 AD5 SER B 326 GLY B 347 1 22 SHEET 1 AA1 6 ALA A 122 CYS A 124 0 SHEET 2 AA1 6 VAL A 100 ARG A 103 1 N ARG A 103 O CYS A 124 SHEET 3 AA1 6 ALA A 76 MET A 81 1 N ALA A 79 O VAL A 102 SHEET 4 AA1 6 LEU A 35 LEU A 38 1 N ALA A 37 O GLY A 78 SHEET 5 AA1 6 THR A 56 PHE A 59 1 O THR A 56 N VAL A 36 SHEET 6 AA1 6 TRP C 888 ASP C 889 1 O TRP C 888 N VAL A 57 SHEET 1 AA2 7 GLN A 224 ARG A 225 0 SHEET 2 AA2 7 SER A 205 TYR A 209 1 N VAL A 206 O GLN A 224 SHEET 3 AA2 7 THR A 182 ILE A 186 1 N LEU A 185 O ILE A 207 SHEET 4 AA2 7 CYS A 238 LEU A 241 1 O CYS A 238 N GLY A 184 SHEET 5 AA2 7 ALA A 265 ASN A 269 1 O VAL A 268 N VAL A 239 SHEET 6 AA2 7 ILE A 290 LEU A 295 1 O ALA A 294 N ASN A 269 SHEET 7 AA2 7 LEU A 316 CYS A 318 1 O ILE A 317 N ALA A 293 SHEET 1 AA3 5 THR B 56 PHE B 59 0 SHEET 2 AA3 5 LEU B 35 LEU B 38 1 N VAL B 36 O THR B 56 SHEET 3 AA3 5 ALA B 76 MET B 81 1 O VAL B 77 N LEU B 35 SHEET 4 AA3 5 VAL B 100 ARG B 103 1 O VAL B 102 N ALA B 79 SHEET 5 AA3 5 ALA B 122 CYS B 124 1 O CYS B 124 N ARG B 103 SHEET 1 AA4 7 GLN B 224 ARG B 225 0 SHEET 2 AA4 7 SER B 205 TYR B 209 1 N VAL B 206 O GLN B 224 SHEET 3 AA4 7 THR B 182 ILE B 186 1 N LEU B 185 O ILE B 207 SHEET 4 AA4 7 CYS B 238 LEU B 241 1 O CYS B 238 N GLY B 184 SHEET 5 AA4 7 ALA B 265 ASN B 269 1 O VAL B 268 N VAL B 239 SHEET 6 AA4 7 ILE B 290 LEU B 295 1 O ALA B 294 N ASN B 269 SHEET 7 AA4 7 LEU B 316 CYS B 318 1 O ILE B 317 N ALA B 293 CISPEP 1 GLU A 301 PRO A 302 0 3.01 CISPEP 2 ILE A 349 PRO A 350 0 3.75 CISPEP 3 HIS B 31 PRO B 32 0 -11.56 CISPEP 4 GLU B 301 PRO B 302 0 5.02 CISPEP 5 ILE B 349 PRO B 350 0 1.42 CRYST1 178.126 178.126 138.833 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005614 0.003241 0.000000 0.00000 SCALE2 0.000000 0.006482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007203 0.00000 CONECT 5284 5285 5286 5287 5306 CONECT 5285 5284 CONECT 5286 5284 CONECT 5287 5284 5288 CONECT 5288 5287 5289 CONECT 5289 5288 5290 5291 CONECT 5290 5289 5295 CONECT 5291 5289 5292 5293 CONECT 5292 5291 CONECT 5293 5291 5294 5295 CONECT 5294 5293 CONECT 5295 5290 5293 5296 CONECT 5296 5295 5297 5305 CONECT 5297 5296 5298 CONECT 5298 5297 5299 CONECT 5299 5298 5300 5305 CONECT 5300 5299 5301 5302 CONECT 5301 5300 CONECT 5302 5300 5303 CONECT 5303 5302 5304 CONECT 5304 5303 5305 CONECT 5305 5296 5299 5304 CONECT 5306 5284 5307 CONECT 5307 5306 5308 5309 5310 CONECT 5308 5307 CONECT 5309 5307 CONECT 5310 5307 5311 CONECT 5311 5310 5312 CONECT 5312 5311 5313 5314 CONECT 5313 5312 5318 CONECT 5314 5312 5315 5316 CONECT 5315 5314 CONECT 5316 5314 5317 5318 CONECT 5317 5316 CONECT 5318 5313 5316 5319 CONECT 5319 5318 5320 5327 CONECT 5320 5319 5321 CONECT 5321 5320 5322 5325 CONECT 5322 5321 5323 5324 CONECT 5323 5322 CONECT 5324 5322 CONECT 5325 5321 5326 CONECT 5326 5325 5327 CONECT 5327 5319 5326 CONECT 5328 5329 5330 5331 5350 CONECT 5329 5328 CONECT 5330 5328 CONECT 5331 5328 5332 CONECT 5332 5331 5333 CONECT 5333 5332 5334 5335 CONECT 5334 5333 5339 CONECT 5335 5333 5336 5337 CONECT 5336 5335 CONECT 5337 5335 5338 5339 CONECT 5338 5337 CONECT 5339 5334 5337 5340 CONECT 5340 5339 5341 5349 CONECT 5341 5340 5342 CONECT 5342 5341 5343 CONECT 5343 5342 5344 5349 CONECT 5344 5343 5345 5346 CONECT 5345 5344 CONECT 5346 5344 5347 CONECT 5347 5346 5348 CONECT 5348 5347 5349 CONECT 5349 5340 5343 5348 CONECT 5350 5328 5351 CONECT 5351 5350 5352 5353 5354 CONECT 5352 5351 CONECT 5353 5351 CONECT 5354 5351 5355 CONECT 5355 5354 5356 CONECT 5356 5355 5357 5358 CONECT 5357 5356 5362 CONECT 5358 5356 5359 5360 CONECT 5359 5358 CONECT 5360 5358 5361 5362 CONECT 5361 5360 CONECT 5362 5357 5360 5363 CONECT 5363 5362 5364 5371 CONECT 5364 5363 5365 CONECT 5365 5364 5366 5369 CONECT 5366 5365 5367 5368 CONECT 5367 5366 CONECT 5368 5366 CONECT 5369 5365 5370 CONECT 5370 5369 5371 CONECT 5371 5363 5370 MASTER 416 0 2 32 25 0 0 6 6028 3 88 53 END