HEADER OXIDOREDUCTASE 18-SEP-25 9WUI TITLE QUINOPROTEIN ALDOSE DEHYDROGENASE IN PQQ-BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE/SORBOSONE DEHYDROGENASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: QUINOPROTEIN ALDOSE DEHYDROGENASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 GENE: PAE2689; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS QUINOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SAKURABA,K.YONEDA REVDAT 1 23-SEP-26 9WUI 0 JRNL AUTH H.SAKURABA,K.YONEDA JRNL TITL QUINOPROTEIN ALDOSE DEHYDROGENASE IN PQQ-BOUND FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -2.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9WUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300063861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.40 REMARK 200 R MERGE (I) : 0.23600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 21.00 REMARK 200 R MERGE FOR SHELL (I) : 1.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG600, IMIDAZOLE BUFFER, ZINC REMARK 280 ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.11800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.77200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.77200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.67700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.77200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.77200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.55900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.77200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.77200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.67700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.77200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.77200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.55900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.11800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 THR A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 SER A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 THR A 23 REMARK 465 ALA A 24 REMARK 465 LEU A 25 REMARK 465 ILE A 26 REMARK 465 ARG A 27 REMARK 465 LYS A 28 REMARK 465 GLY A 29 REMARK 465 PRO A 30 REMARK 465 SER A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 TRP A 34 REMARK 465 LYS A 35 REMARK 465 GLU A 116 REMARK 465 GLY A 117 REMARK 465 GLY A 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 93 -104.06 -114.03 REMARK 500 SER A 105 43.64 -83.53 REMARK 500 LYS A 137 -118.25 -102.06 REMARK 500 ASN A 215 77.91 -158.10 REMARK 500 PRO A 235 -105.74 -75.38 REMARK 500 SER A 279 -118.92 -125.31 REMARK 500 LEU A 301 -82.37 -82.07 REMARK 500 ASN A 326 18.71 57.06 REMARK 500 SER A 347 46.12 -146.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 46 OE1 REMARK 620 2 GLU A 46 OE2 53.7 REMARK 620 3 ASP A 200 OD2 44.2 64.1 REMARK 620 4 HOH A 592 O 111.2 85.3 70.0 REMARK 620 5 HOH A 602 O 104.3 89.6 146.7 130.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 GLU A 368 OE2 67.6 REMARK 620 3 HIS A 370 ND1 68.9 3.5 REMARK 620 4 HOH A 576 O 68.1 3.5 0.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 234 O REMARK 620 2 PRO A 235 O 71.7 REMARK 620 3 PQQ A 401 O5 78.8 127.3 REMARK 620 4 PQQ A 401 O7A 155.3 85.0 123.6 REMARK 620 5 HOH A 533 O 80.4 69.2 146.1 83.6 REMARK 620 6 HOH A 567 O 92.9 141.9 80.6 100.7 74.1 REMARK 620 7 HOH A 575 O 95.2 72.4 67.9 85.4 140.8 145.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 240 OE1 REMARK 620 2 GLU A 240 OE2 53.0 REMARK 620 3 TYR A 250 O 144.3 155.8 REMARK 620 4 HOH A 520 O 114.0 85.9 94.7 REMARK 620 5 HOH A 525 O 130.2 83.1 73.2 80.3 REMARK 620 6 HOH A 543 O 78.7 97.9 76.3 165.9 86.7 REMARK 620 7 HOH A 553 O 79.6 119.1 84.7 80.8 149.4 108.7 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9WUH RELATED DB: PDB DBREF 9WUI A 1 371 UNP Q8ZUN8 Q8ZUN8_PYRAE 1 371 SEQADV 9WUI GLN A 64 UNP Q8ZUN8 ARG 64 ENGINEERED MUTATION SEQADV 9WUI ASN A 350 UNP Q8ZUN8 ASP 350 ENGINEERED MUTATION SEQRES 1 A 371 MET ARG ARG ARG THR PHE LEU THR LEU ALA VAL LEU VAL SEQRES 2 A 371 SER LEU SER ALA SER LEU GLY LEU LEU THR ALA LEU ILE SEQRES 3 A 371 ARG LYS GLY PRO SER GLU GLU TRP LYS PHE LYS ILE SER SEQRES 4 A 371 GLU VAL ALA SER ASP LEU GLU VAL PRO TRP SER ILE ALA SEQRES 5 A 371 PRO LEU GLY GLY GLY ARG TYR LEU VAL THR GLU GLN PRO SEQRES 6 A 371 GLY ARG LEU VAL LEU ILE SER PRO SER GLY LYS LYS LEU SEQRES 7 A 371 VAL ALA SER PHE ASP VAL ALA ASN VAL GLY GLU ALA GLY SEQRES 8 A 371 LEU LEU GLY LEU ALA LEU HIS PRO GLU PHE PRO LYS LYS SEQRES 9 A 371 SER TRP VAL TYR LEU TYR ALA SER TYR PHE ALA GLU GLY SEQRES 10 A 371 GLY HIS ILE ARG ASN ARG VAL ILE ARG GLY ARG LEU ASP SEQRES 11 A 371 GLY SER THR PHE LYS LEU LYS GLU VAL LYS THR LEU ILE SEQRES 12 A 371 ASP GLY ILE PRO GLY ALA TYR ILE HIS ASN GLY GLY ARG SEQRES 13 A 371 ILE ARG PHE GLY PRO ASP GLY MET LEU TYR ILE THR THR SEQRES 14 A 371 GLY ASP ALA ALA ASP PRO ARG LEU ALA GLN ASP LEU SER SEQRES 15 A 371 SER LEU ALA GLY LYS ILE LEU ARG VAL ASP GLU GLU GLY SEQRES 16 A 371 ARG PRO PRO ALA ASP ASN PRO PHE PRO ASN SER PRO ILE SEQRES 17 A 371 TRP SER TYR GLY HIS ARG ASN PRO GLN GLY ILE ASP TRP SEQRES 18 A 371 HIS ARG ALA SER GLY VAL MET VAL ALA THR GLU HIS GLY SEQRES 19 A 371 PRO VAL GLY HIS ASP GLU VAL ASN ILE ILE LEU LYS GLY SEQRES 20 A 371 GLY ASN TYR GLY TRP PRO LEU ALA THR GLY LYS ALA GLY SEQRES 21 A 371 ARG GLY GLU PHE VAL ASP PRO VAL ILE ASP THR GLY SER SEQRES 22 A 371 GLU THR TRP ALA PRO SER GLY ALA SER PHE VAL HIS GLY SEQRES 23 A 371 ASP MET PHE PRO GLY LEU ARG GLY TRP LEU LEU ILE ALA SEQRES 24 A 371 CYS LEU ARG GLY SER MET LEU ALA ALA VAL ASN PHE GLY SEQRES 25 A 371 ASP ASN MET GLU VAL ARG LYS ILE SER THR PHE PHE LYS SEQRES 26 A 371 ASN VAL PHE GLY ARG LEU ARG ASP VAL VAL ILE ASP ASP SEQRES 27 A 371 ASP GLY GLY ILE LEU ILE SER THR SER ASN ARG ASN GLY SEQRES 28 A 371 ARG GLY SER LEU ARG ALA GLY ASP ASP LYS ILE LEU LYS SEQRES 29 A 371 ILE VAL SER GLU GLN HIS THR HET PQQ A 401 24 HET CA A 402 1 HET CA A 403 1 HET ZN A 404 1 HET ZN A 405 1 HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 PQQ C14 H6 N2 O8 FORMUL 3 CA 2(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *115(H2 O) HELIX 1 AA1 ASP A 174 ASP A 180 5 7 HELIX 2 AA2 PHE A 289 ARG A 293 5 5 SHEET 1 AA1 4 LYS A 37 ALA A 42 0 SHEET 2 AA1 4 ILE A 362 VAL A 366 -1 O LYS A 364 N SER A 39 SHEET 3 AA1 4 ILE A 342 THR A 346 -1 N ILE A 342 O ILE A 365 SHEET 4 AA1 4 LEU A 331 ILE A 336 -1 N VAL A 335 O LEU A 343 SHEET 1 AA2 4 PRO A 48 GLY A 55 0 SHEET 2 AA2 4 ARG A 58 GLU A 63 -1 O LEU A 60 N ALA A 52 SHEET 3 AA2 4 ARG A 67 SER A 72 -1 O ILE A 71 N TYR A 59 SHEET 4 AA2 4 GLY A 75 SER A 81 -1 O LYS A 77 N LEU A 70 SHEET 1 AA3 4 LEU A 92 LEU A 97 0 SHEET 2 AA3 4 TRP A 106 TYR A 113 -1 O TYR A 108 N ALA A 96 SHEET 3 AA3 4 ARG A 121 LEU A 129 -1 O ARG A 121 N TYR A 113 SHEET 4 AA3 4 LEU A 136 PRO A 147 -1 O LYS A 137 N ARG A 128 SHEET 1 AA4 4 ILE A 157 PHE A 159 0 SHEET 2 AA4 4 LEU A 165 THR A 168 -1 O TYR A 166 N ARG A 158 SHEET 3 AA4 4 LYS A 187 VAL A 191 -1 O LEU A 189 N ILE A 167 SHEET 4 AA4 4 ILE A 208 TYR A 211 -1 O TRP A 209 N ILE A 188 SHEET 1 AA5 4 GLY A 218 TRP A 221 0 SHEET 2 AA5 4 MET A 228 GLU A 232 -1 O VAL A 229 N ASP A 220 SHEET 3 AA5 4 GLU A 240 ILE A 244 -1 O ASN A 242 N ALA A 230 SHEET 4 AA5 4 ILE A 269 ASP A 270 -1 O ILE A 269 N VAL A 241 SHEET 1 AA6 4 PRO A 278 PHE A 283 0 SHEET 2 AA6 4 TRP A 295 CYS A 300 -1 O ALA A 299 N SER A 279 SHEET 3 AA6 4 MET A 305 PHE A 311 -1 O VAL A 309 N LEU A 296 SHEET 4 AA6 4 VAL A 317 PHE A 323 -1 O LYS A 319 N ASN A 310 LINK OE1 GLU A 46 ZN ZN A 404 1555 1555 2.12 LINK OE2 GLU A 46 ZN ZN A 404 1555 1555 2.52 LINK OD2 ASP A 83 ZN ZN A 405 1555 6545 1.76 LINK OD2 ASP A 200 ZN ZN A 404 1555 3544 1.92 LINK O GLY A 234 CA CA A 403 1555 1555 2.38 LINK O PRO A 235 CA CA A 403 1555 1555 2.39 LINK OE1 GLU A 240 CA CA A 402 1555 1555 2.46 LINK OE2 GLU A 240 CA CA A 402 1555 1555 2.52 LINK O TYR A 250 CA CA A 402 1555 1555 2.59 LINK OE2 GLU A 368 ZN ZN A 405 1555 1555 2.14 LINK ND1 HIS A 370 ZN ZN A 405 1555 1555 2.14 LINK O5 PQQ A 401 CA CA A 403 1555 1555 2.70 LINK O7A PQQ A 401 CA CA A 403 1555 1555 2.52 LINK CA CA A 402 O HOH A 520 1555 1555 2.49 LINK CA CA A 402 O HOH A 525 1555 1555 2.36 LINK CA CA A 402 O HOH A 543 1555 1555 2.51 LINK CA CA A 402 O HOH A 553 1555 1555 2.46 LINK CA CA A 403 O HOH A 533 1555 1555 2.33 LINK CA CA A 403 O HOH A 567 1555 1555 2.41 LINK CA CA A 403 O HOH A 575 1555 1555 2.48 LINK ZN ZN A 404 O HOH A 592 1555 4555 2.15 LINK ZN ZN A 404 O HOH A 602 1555 1555 2.22 LINK ZN ZN A 405 O HOH A 576 1555 6445 2.33 CISPEP 1 PHE A 101 PRO A 102 0 -2.34 CISPEP 2 TRP A 252 PRO A 253 0 -2.79 CISPEP 3 ASP A 359 ASP A 360 0 -5.31 CRYST1 73.544 73.544 150.236 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006656 0.00000 CONECT 85 2578 CONECT 86 2578 CONECT 1511 2577 CONECT 1515 2577 CONECT 1555 2576 CONECT 1556 2576 CONECT 1624 2576 CONECT 2523 2579 CONECT 2539 2579 CONECT 2552 2553 2559 CONECT 2553 2552 2554 2557 CONECT 2554 2553 2555 2556 CONECT 2555 2554 CONECT 2556 2554 CONECT 2557 2553 2558 CONECT 2558 2557 2559 2560 CONECT 2559 2552 2558 2575 CONECT 2560 2558 2561 2562 CONECT 2561 2560 CONECT 2562 2560 2563 2564 CONECT 2563 2562 2577 CONECT 2564 2562 2565 2575 CONECT 2565 2564 2566 CONECT 2566 2565 2567 2570 CONECT 2567 2566 2568 2569 CONECT 2568 2567 2577 CONECT 2569 2567 CONECT 2570 2566 2571 CONECT 2571 2570 2572 2575 CONECT 2572 2571 2573 2574 CONECT 2573 2572 CONECT 2574 2572 CONECT 2575 2559 2564 2571 CONECT 2576 1555 1556 1624 2599 CONECT 2576 2604 2622 2632 CONECT 2577 1511 1515 2563 2568 CONECT 2577 2612 2646 2654 CONECT 2578 85 86 2681 CONECT 2579 2523 2539 CONECT 2599 2576 CONECT 2604 2576 CONECT 2612 2577 CONECT 2622 2576 CONECT 2632 2576 CONECT 2646 2577 CONECT 2654 2577 CONECT 2681 2578 MASTER 375 0 5 2 24 0 0 6 2693 1 47 29 END