HEADER BIOSYNTHETIC PROTEIN 23-SEP-25 9WWI TITLE GATPS1-APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: SESTERTERPENES; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GENTIANELLA; SOURCE 3 ORGANISM_TAXID: 49959; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 37762 KEYWDS TERPENE SYNTHASE, BIOSYNTHETIC PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR K.GUO,Y.Z.FAN REVDAT 1 30-SEP-26 9WWI 0 JRNL AUTH K.GUO JRNL TITL DISCOVERY AND BIOSYNTHESIS OF GENTIANELLANE-TYPE JRNL TITL 2 SESTERTERPENOIDS AS POTENT ANTI-LIVER FIBROSIS AGENTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.220 REMARK 3 NUMBER OF PARTICLES : 467895 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9WWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 26-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300064014. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : GATPS1-GGSPP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ARG A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 PHE A 6 REMARK 465 PRO A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ASP A 13 REMARK 465 ARG A 14 REMARK 465 PHE A 15 REMARK 465 MET A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 PHE A 19 REMARK 465 THR A 20 REMARK 465 HIS A 21 REMARK 465 LEU A 22 REMARK 465 ASP A 23 REMARK 465 GLN A 24 REMARK 465 LYS A 25 REMARK 465 VAL A 26 REMARK 465 HIS A 27 REMARK 465 GLU A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 30 15.39 -141.05 REMARK 500 LYS A 89 44.45 -140.80 REMARK 500 SER A 136 -72.94 64.29 REMARK 500 ARG A 173 43.77 -140.13 REMARK 500 LYS A 242 47.36 -85.65 REMARK 500 GLU A 243 -36.55 -132.14 REMARK 500 ALA A 246 48.77 -81.86 REMARK 500 ALA A 247 -30.28 -130.25 REMARK 500 THR A 286 52.00 -90.81 REMARK 500 ASP A 295 49.27 -93.23 REMARK 500 ALA A 296 -73.03 -172.04 REMARK 500 TYR A 420 71.36 59.37 REMARK 500 THR A 492 48.20 37.82 REMARK 500 THR A 493 -57.20 -153.85 REMARK 500 LEU A 529 16.56 56.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-66312 RELATED DB: EMDB REMARK 900 GATPS1-APO DBREF 9WWI A -1 543 PDB 9WWI 9WWI -1 543 SEQRES 1 A 545 GLY SER ARG PRO LEU VAL ASN PHE PRO GLU LYS ILE SER SEQRES 2 A 545 GLY ASP ARG PHE MET SER SER PHE THR HIS LEU ASP GLN SEQRES 3 A 545 LYS VAL HIS GLU GLY TYR ALA LYS GLU ILE GLN SER LEU SEQRES 4 A 545 LYS ASP GLU VAL LYS ASN MET LEU LEU LYS GLU CYS LYS SEQRES 5 A 545 ALA VAL ASP LYS LEU TYR LEU ILE ASP ASN ILE GLU ARG SEQRES 6 A 545 LEU GLY LEU SER TYR HIS PHE GLU ASP GLU ILE ASP GLU SEQRES 7 A 545 GLN LEU GLN LEU LEU PHE ASP GLN ASN GLU SER ILE LYS SEQRES 8 A 545 ASP ASP ARG TYR SER ASP LEU SER THR ILE ALA LEU ARG SEQRES 9 A 545 PHE ARG LEU PHE ARG GLN HIS GLY TYR PRO ILE SER SER SEQRES 10 A 545 ASP VAL PHE LYS GLN PHE THR PHE GLY ASN GLY THR PHE SEQRES 11 A 545 LYS THR ALA LEU GLN SER ASP SER ARG GLY ILE LEU ASN SEQRES 12 A 545 LEU TYR ASP ALA ALA TYR VAL SER THR ARG ASN ASP VAL SEQRES 13 A 545 ILE LEU ASP GLU ALA VAL ARG PHE THR THR ASP LYS LEU SEQRES 14 A 545 GLN ARG GLN SER THR ARG GLY ALA TYR ILE ASP LYS LEU SEQRES 15 A 545 VAL LYS HIS ALA LEU GLU GLN SER LEU HIS ARG GLY VAL SEQRES 16 A 545 PRO ARG LEU GLU ALA ARG HIS PHE ILE ASP ALA TYR GLU SEQRES 17 A 545 HIS ASP GLU MET LYS ASN VAL SER LEU LEU LYS LEU ALA SEQRES 18 A 545 LYS LEU ASP PHE ASN PHE LEU GLN LEU LEU TYR LYS GLN SEQRES 19 A 545 GLU LEU ASN GLU SER LEU ARG TRP TRP LYS GLU ILE ASP SEQRES 20 A 545 ALA ALA THR ASN VAL PRO TYR ALA ARG ASN ARG LEU VAL SEQRES 21 A 545 GLU SER TYR PHE TRP ALA LEU VAL MET PHE TYR GLU PRO SEQRES 22 A 545 LYS TYR SER LYS ALA ARG LEU MET VAL THR LYS TYR LEU SEQRES 23 A 545 ALA THR GLY THR PHE ILE ASP ASP THR TYR ASP ALA TYR SEQRES 24 A 545 GLY SER ARG ASP GLU LEU GLU ILE PHE THR SER ALA ILE SEQRES 25 A 545 GLN ARG TRP ASP TYR SER GLU ALA ASP ARG LEU PRO GLY SEQRES 26 A 545 TYR MET LYS LYS ALA TYR THR ILE PHE LEU ASN THR TYR SEQRES 27 A 545 VAL GLU PHE GLU GLU TYR ALA ASN GLN GLN GLY ARG PRO SEQRES 28 A 545 TYR ALA PHE HIS TYR LEU GLN GLU GLY TRP LYS GLU TYR SEQRES 29 A 545 SER ARG SER SER ASN MET GLN SER ARG TRP PHE PHE ASN SEQRES 30 A 545 PRO GLU GLU LEU PRO LEU PHE ASP GLU TYR MET VAL HIS SEQRES 31 A 545 GLY LEU ILE THR GLY ALA GLY ARG VAL ASN ALA CYS VAL SEQRES 32 A 545 CYS ALA LEU LEU MET GLU SER GLY THR GLU ASP ALA PHE SEQRES 33 A 545 GLN TRP LEU PHE GLN TYR PRO PRO ILE LEU TYR ALA GLY SEQRES 34 A 545 ASN THR ILE TYR ARG LEU VAL ASN ASP LEU ALA GLY TYR SEQRES 35 A 545 GLN VAL GLU LYS GLU THR GLY ILE PRO ASN SER ILE ASP SEQRES 36 A 545 CYS TYR MET LYS GLU PHE LYS VAL SER GLU GLU GLU ALA SEQRES 37 A 545 LYS MET ARG LEU THR GLU MET VAL GLU ASN ALA TRP LYS SEQRES 38 A 545 ASP PHE ASN GLU GLU TYR MET ASN ARG ARG LYS GLN THR SEQRES 39 A 545 THR PRO PRO ILE GLY GLU GLU ILE TRP THR LEU LEU ILE SEQRES 40 A 545 ASN GLN THR ARG ILE MET ASP VAL ALA TYR LYS ASN GLY SEQRES 41 A 545 VAL ASP GLY TRP THR ASN SER GLN ASP SER LEU LYS HIS SEQRES 42 A 545 PHE LEU ASN GLY LEU LEU VAL ASP PRO ILE PRO ILE HELIX 1 AA1 ALA A 31 LYS A 47 1 17 HELIX 2 AA2 LYS A 50 LEU A 64 1 15 HELIX 3 AA3 GLU A 71 GLN A 84 1 14 HELIX 4 AA4 SER A 94 GLN A 108 1 15 HELIX 5 AA5 SER A 114 PHE A 118 5 5 HELIX 6 AA6 LYS A 129 ASP A 135 5 7 HELIX 7 AA7 SER A 136 ALA A 146 1 11 HELIX 8 AA8 TYR A 147 SER A 149 5 3 HELIX 9 AA9 ASP A 153 ARG A 169 1 17 HELIX 10 AB1 GLY A 174 LEU A 185 1 12 HELIX 11 AB2 VAL A 193 TYR A 205 1 13 HELIX 12 AB3 GLU A 206 ASP A 208 5 3 HELIX 13 AB4 ASN A 212 ASP A 245 1 34 HELIX 14 AB5 ARG A 256 VAL A 266 1 11 HELIX 15 AB6 GLU A 270 LYS A 272 5 3 HELIX 16 AB7 TYR A 273 THR A 286 1 14 HELIX 17 AB8 GLY A 287 ASP A 295 1 9 HELIX 18 AB9 SER A 299 TRP A 313 1 15 HELIX 19 AC1 ASP A 314 PRO A 322 5 9 HELIX 20 AC2 GLY A 323 GLN A 346 1 24 HELIX 21 AC3 TYR A 350 ASN A 375 1 26 HELIX 22 AC4 LEU A 381 THR A 392 1 12 HELIX 23 AC5 GLY A 395 LEU A 404 1 10 HELIX 24 AC6 THR A 410 PHE A 418 1 9 HELIX 25 AC7 PRO A 421 ALA A 438 1 18 HELIX 26 AC8 GLY A 439 LYS A 444 1 6 HELIX 27 AC9 ASN A 450 LYS A 460 1 11 HELIX 28 AD1 SER A 462 LYS A 467 1 6 HELIX 29 AD2 LEU A 470 ARG A 488 1 19 HELIX 30 AD3 ARG A 489 GLN A 491 5 3 HELIX 31 AD4 GLY A 497 GLN A 507 1 11 HELIX 32 AD5 ARG A 509 ALA A 514 1 6 HELIX 33 AD6 GLY A 535 ASP A 539 5 5 SHEET 1 AA1 2 TYR A 515 LYS A 516 0 SHEET 2 AA1 2 THR A 523 ASN A 524 -1 O THR A 523 N LYS A 516 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 166 0 0 33 2 0 0 6 4271 1 0 42 END