data_9WXK # _entry.id 9WXK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9WXK pdb_00009wxk 10.2210/pdb9wxk/pdb WWPDB D_1300064054 ? ? BMRB 36788 ? 10.13018/BMR36788 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-01-21 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9WXK _pdbx_database_status.recvd_initial_deposition_date 2025-09-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Linear fragment of lycosin9I with anti-MRSA activity' _pdbx_database_related.db_id 36788 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email lyukmanova_ekaterina@smbu.edu.cn _pdbx_contact_author.name_first Ekaterina _pdbx_contact_author.name_last Lyukmanova _pdbx_contact_author.name_mi N _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9728-9407 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mironov, P.A.' 1 0000-0002-7884-3257 'Dubovskii, P.V.' 2 0000-0003-2289-6023 'Shenkarev, Z.O.' 3 0000-0003-1383-3522 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Pharmaceutics _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1999-4923 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;NMR Unveils Activity Mechanism of Linear Spider Venom Peptide Fragments Selected by Neural Networks Against Staphylococci Including MRSA. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/pharmaceutics17121526 _citation.pdbx_database_id_PubMed 41471040 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mironov, P.A.' 1 0000-0002-7884-3257 primary 'Baranova, A.A.' 2 ? primary 'Alferova, V.A.' 3 0000-0002-8961-5890 primary 'Egorova, N.S.' 4 ? primary 'Ignatova, A.A.' 5 0000-0002-5217-3937 primary 'Feofanov, A.V.' 6 0000-0002-1596-9506 primary 'Shenkarev, Z.O.' 7 0000-0003-1383-3522 primary 'Dubovskii, P.V.' 8 0000-0003-2289-6023 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Lycosin 9i 3k' _entity.formula_weight 1544.947 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'The fragment of lycosin 9i with amidated C-terminus' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'IWLSLMKFAGKHL(NH2)' _entity_poly.pdbx_seq_one_letter_code_can IWLSLMKFAGKHLX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 TRP n 1 3 LEU n 1 4 SER n 1 5 LEU n 1 6 MET n 1 7 LYS n 1 8 PHE n 1 9 ALA n 1 10 GLY n 1 11 LYS n 1 12 HIS n 1 13 LEU n 1 14 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Lycosa erythrognatha' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 332789 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 1 1 ILE ILE A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 MET 6 6 6 MET MET A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 NH2 14 14 14 NH2 NH2 A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NH2 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NH2 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9WXK _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9WXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9WXK _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _database_PDB_matrix.entry_id 9WXK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 9WXK _struct.title 'Linear fragment of lycosin9I with anti-MRSA activity' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9WXK _struct_keywords.text 'Antimicrobial protein, AMP, linear peptide, spider toxin, alpha-helical peptide, MRSA' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A8D8EPN3_9ARAC _struct_ref.pdbx_db_accession A0A8D8EPN3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IWLSLMKFAGKHL _struct_ref.pdbx_align_begin 11 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9WXK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A8D8EPN3 _struct_ref_seq.db_align_beg 11 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 9WXK _struct_ref_seq_dif.mon_id NH2 _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 14 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A0A8D8EPN3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details amidation _struct_ref_seq_dif.pdbx_auth_seq_num 14 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id LYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 7 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 13 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 7 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 13 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LEU _struct_conn.ptnr1_label_seq_id 13 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 14 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LEU _struct_conn.ptnr1_auth_seq_id 13 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 14 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id NH2 _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 14 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LEU _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 13 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id NH2 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 14 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LEU _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 13 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id LEU _pdbx_modification_feature.ref_pcm_id 14 _pdbx_modification_feature.ref_comp_id NH2 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Terminal amidation' # _pdbx_entry_details.entry_id 9WXK _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 6 ? ? -179.70 -33.50 2 2 MET A 6 ? ? 179.92 -33.29 3 3 MET A 6 ? ? 179.88 -33.20 4 4 MET A 6 ? ? 179.97 -33.33 5 5 MET A 6 ? ? -179.99 -33.30 6 6 MET A 6 ? ? 179.93 -33.25 7 7 MET A 6 ? ? -179.95 -33.19 8 8 MET A 6 ? ? -179.97 -33.33 9 9 MET A 6 ? ? 179.98 -33.24 10 10 MET A 6 ? ? -179.97 -33.25 11 11 MET A 6 ? ? -180.00 -33.21 12 12 MET A 6 ? ? 179.89 -33.20 13 13 MET A 6 ? ? -179.99 -33.13 14 14 MET A 6 ? ? -179.90 -33.24 15 15 MET A 6 ? ? 179.95 -33.22 16 16 MET A 6 ? ? 179.96 -33.16 17 17 MET A 6 ? ? 179.96 -33.21 18 18 MET A 6 ? ? 179.93 -33.13 19 19 MET A 6 ? ? 179.95 -33.27 20 20 MET A 6 ? ? -179.94 -33.21 # _pdbx_nmr_ensemble.entry_id 9WXK _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9WXK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.12 mM Lycosin 9I in LPPG micelle, 16.8 mM LPPG, 5 % [U-99% 2H] D2O, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type micelle _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Lycosin 9I in LPPG micelle' 0.12 ? mM 'natural abundance' 1 LPPG 16.8 ? mM 'natural abundance' 1 D2O 5 ? % '[U-99% 2H]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 318 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.01 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 2 isotropic 3 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 4 1 1 '2D 1H-15N HSQC' 2 isotropic # _pdbx_nmr_refine.entry_id 9WXK _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement CYANA 3.98.13 'Guntert, Mumenthaler and Wuthrich' 2 'structure calculation' CYANA 3.98.13 'Guntert, Mumenthaler and Wuthrich' 3 collection TopSpin 3.5 'Bruker Biospin' 4 'chemical shift assignment' CARA ? 'Keller and Wuthrich' 5 'peak picking' CARA ? 'Keller and Wuthrich' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 HIS N N N N 24 HIS CA C N S 25 HIS C C N N 26 HIS O O N N 27 HIS CB C N N 28 HIS CG C Y N 29 HIS ND1 N Y N 30 HIS CD2 C Y N 31 HIS CE1 C Y N 32 HIS NE2 N Y N 33 HIS OXT O N N 34 HIS H H N N 35 HIS H2 H N N 36 HIS HA H N N 37 HIS HB2 H N N 38 HIS HB3 H N N 39 HIS HD1 H N N 40 HIS HD2 H N N 41 HIS HE1 H N N 42 HIS HE2 H N N 43 HIS HXT H N N 44 ILE N N N N 45 ILE CA C N S 46 ILE C C N N 47 ILE O O N N 48 ILE CB C N S 49 ILE CG1 C N N 50 ILE CG2 C N N 51 ILE CD1 C N N 52 ILE OXT O N N 53 ILE H H N N 54 ILE H2 H N N 55 ILE HA H N N 56 ILE HB H N N 57 ILE HG12 H N N 58 ILE HG13 H N N 59 ILE HG21 H N N 60 ILE HG22 H N N 61 ILE HG23 H N N 62 ILE HD11 H N N 63 ILE HD12 H N N 64 ILE HD13 H N N 65 ILE HXT H N N 66 LEU N N N N 67 LEU CA C N S 68 LEU C C N N 69 LEU O O N N 70 LEU CB C N N 71 LEU CG C N N 72 LEU CD1 C N N 73 LEU CD2 C N N 74 LEU OXT O N N 75 LEU H H N N 76 LEU H2 H N N 77 LEU HA H N N 78 LEU HB2 H N N 79 LEU HB3 H N N 80 LEU HG H N N 81 LEU HD11 H N N 82 LEU HD12 H N N 83 LEU HD13 H N N 84 LEU HD21 H N N 85 LEU HD22 H N N 86 LEU HD23 H N N 87 LEU HXT H N N 88 LYS N N N N 89 LYS CA C N S 90 LYS C C N N 91 LYS O O N N 92 LYS CB C N N 93 LYS CG C N N 94 LYS CD C N N 95 LYS CE C N N 96 LYS NZ N N N 97 LYS OXT O N N 98 LYS H H N N 99 LYS H2 H N N 100 LYS HA H N N 101 LYS HB2 H N N 102 LYS HB3 H N N 103 LYS HG2 H N N 104 LYS HG3 H N N 105 LYS HD2 H N N 106 LYS HD3 H N N 107 LYS HE2 H N N 108 LYS HE3 H N N 109 LYS HZ1 H N N 110 LYS HZ2 H N N 111 LYS HZ3 H N N 112 LYS HXT H N N 113 MET N N N N 114 MET CA C N S 115 MET C C N N 116 MET O O N N 117 MET CB C N N 118 MET CG C N N 119 MET SD S N N 120 MET CE C N N 121 MET OXT O N N 122 MET H H N N 123 MET H2 H N N 124 MET HA H N N 125 MET HB2 H N N 126 MET HB3 H N N 127 MET HG2 H N N 128 MET HG3 H N N 129 MET HE1 H N N 130 MET HE2 H N N 131 MET HE3 H N N 132 MET HXT H N N 133 NH2 N N N N 134 NH2 HN1 H N N 135 NH2 HN2 H N N 136 PHE N N N N 137 PHE CA C N S 138 PHE C C N N 139 PHE O O N N 140 PHE CB C N N 141 PHE CG C Y N 142 PHE CD1 C Y N 143 PHE CD2 C Y N 144 PHE CE1 C Y N 145 PHE CE2 C Y N 146 PHE CZ C Y N 147 PHE OXT O N N 148 PHE H H N N 149 PHE H2 H N N 150 PHE HA H N N 151 PHE HB2 H N N 152 PHE HB3 H N N 153 PHE HD1 H N N 154 PHE HD2 H N N 155 PHE HE1 H N N 156 PHE HE2 H N N 157 PHE HZ H N N 158 PHE HXT H N N 159 SER N N N N 160 SER CA C N S 161 SER C C N N 162 SER O O N N 163 SER CB C N N 164 SER OG O N N 165 SER OXT O N N 166 SER H H N N 167 SER H2 H N N 168 SER HA H N N 169 SER HB2 H N N 170 SER HB3 H N N 171 SER HG H N N 172 SER HXT H N N 173 TRP N N N N 174 TRP CA C N S 175 TRP C C N N 176 TRP O O N N 177 TRP CB C N N 178 TRP CG C Y N 179 TRP CD1 C Y N 180 TRP CD2 C Y N 181 TRP NE1 N Y N 182 TRP CE2 C Y N 183 TRP CE3 C Y N 184 TRP CZ2 C Y N 185 TRP CZ3 C Y N 186 TRP CH2 C Y N 187 TRP OXT O N N 188 TRP H H N N 189 TRP H2 H N N 190 TRP HA H N N 191 TRP HB2 H N N 192 TRP HB3 H N N 193 TRP HD1 H N N 194 TRP HE1 H N N 195 TRP HE3 H N N 196 TRP HZ2 H N N 197 TRP HZ3 H N N 198 TRP HH2 H N N 199 TRP HXT H N N 200 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 HIS N CA sing N N 22 HIS N H sing N N 23 HIS N H2 sing N N 24 HIS CA C sing N N 25 HIS CA CB sing N N 26 HIS CA HA sing N N 27 HIS C O doub N N 28 HIS C OXT sing N N 29 HIS CB CG sing N N 30 HIS CB HB2 sing N N 31 HIS CB HB3 sing N N 32 HIS CG ND1 sing Y N 33 HIS CG CD2 doub Y N 34 HIS ND1 CE1 doub Y N 35 HIS ND1 HD1 sing N N 36 HIS CD2 NE2 sing Y N 37 HIS CD2 HD2 sing N N 38 HIS CE1 NE2 sing Y N 39 HIS CE1 HE1 sing N N 40 HIS NE2 HE2 sing N N 41 HIS OXT HXT sing N N 42 ILE N CA sing N N 43 ILE N H sing N N 44 ILE N H2 sing N N 45 ILE CA C sing N N 46 ILE CA CB sing N N 47 ILE CA HA sing N N 48 ILE C O doub N N 49 ILE C OXT sing N N 50 ILE CB CG1 sing N N 51 ILE CB CG2 sing N N 52 ILE CB HB sing N N 53 ILE CG1 CD1 sing N N 54 ILE CG1 HG12 sing N N 55 ILE CG1 HG13 sing N N 56 ILE CG2 HG21 sing N N 57 ILE CG2 HG22 sing N N 58 ILE CG2 HG23 sing N N 59 ILE CD1 HD11 sing N N 60 ILE CD1 HD12 sing N N 61 ILE CD1 HD13 sing N N 62 ILE OXT HXT sing N N 63 LEU N CA sing N N 64 LEU N H sing N N 65 LEU N H2 sing N N 66 LEU CA C sing N N 67 LEU CA CB sing N N 68 LEU CA HA sing N N 69 LEU C O doub N N 70 LEU C OXT sing N N 71 LEU CB CG sing N N 72 LEU CB HB2 sing N N 73 LEU CB HB3 sing N N 74 LEU CG CD1 sing N N 75 LEU CG CD2 sing N N 76 LEU CG HG sing N N 77 LEU CD1 HD11 sing N N 78 LEU CD1 HD12 sing N N 79 LEU CD1 HD13 sing N N 80 LEU CD2 HD21 sing N N 81 LEU CD2 HD22 sing N N 82 LEU CD2 HD23 sing N N 83 LEU OXT HXT sing N N 84 LYS N CA sing N N 85 LYS N H sing N N 86 LYS N H2 sing N N 87 LYS CA C sing N N 88 LYS CA CB sing N N 89 LYS CA HA sing N N 90 LYS C O doub N N 91 LYS C OXT sing N N 92 LYS CB CG sing N N 93 LYS CB HB2 sing N N 94 LYS CB HB3 sing N N 95 LYS CG CD sing N N 96 LYS CG HG2 sing N N 97 LYS CG HG3 sing N N 98 LYS CD CE sing N N 99 LYS CD HD2 sing N N 100 LYS CD HD3 sing N N 101 LYS CE NZ sing N N 102 LYS CE HE2 sing N N 103 LYS CE HE3 sing N N 104 LYS NZ HZ1 sing N N 105 LYS NZ HZ2 sing N N 106 LYS NZ HZ3 sing N N 107 LYS OXT HXT sing N N 108 MET N CA sing N N 109 MET N H sing N N 110 MET N H2 sing N N 111 MET CA C sing N N 112 MET CA CB sing N N 113 MET CA HA sing N N 114 MET C O doub N N 115 MET C OXT sing N N 116 MET CB CG sing N N 117 MET CB HB2 sing N N 118 MET CB HB3 sing N N 119 MET CG SD sing N N 120 MET CG HG2 sing N N 121 MET CG HG3 sing N N 122 MET SD CE sing N N 123 MET CE HE1 sing N N 124 MET CE HE2 sing N N 125 MET CE HE3 sing N N 126 MET OXT HXT sing N N 127 NH2 N HN1 sing N N 128 NH2 N HN2 sing N N 129 PHE N CA sing N N 130 PHE N H sing N N 131 PHE N H2 sing N N 132 PHE CA C sing N N 133 PHE CA CB sing N N 134 PHE CA HA sing N N 135 PHE C O doub N N 136 PHE C OXT sing N N 137 PHE CB CG sing N N 138 PHE CB HB2 sing N N 139 PHE CB HB3 sing N N 140 PHE CG CD1 doub Y N 141 PHE CG CD2 sing Y N 142 PHE CD1 CE1 sing Y N 143 PHE CD1 HD1 sing N N 144 PHE CD2 CE2 doub Y N 145 PHE CD2 HD2 sing N N 146 PHE CE1 CZ doub Y N 147 PHE CE1 HE1 sing N N 148 PHE CE2 CZ sing Y N 149 PHE CE2 HE2 sing N N 150 PHE CZ HZ sing N N 151 PHE OXT HXT sing N N 152 SER N CA sing N N 153 SER N H sing N N 154 SER N H2 sing N N 155 SER CA C sing N N 156 SER CA CB sing N N 157 SER CA HA sing N N 158 SER C O doub N N 159 SER C OXT sing N N 160 SER CB OG sing N N 161 SER CB HB2 sing N N 162 SER CB HB3 sing N N 163 SER OG HG sing N N 164 SER OXT HXT sing N N 165 TRP N CA sing N N 166 TRP N H sing N N 167 TRP N H2 sing N N 168 TRP CA C sing N N 169 TRP CA CB sing N N 170 TRP CA HA sing N N 171 TRP C O doub N N 172 TRP C OXT sing N N 173 TRP CB CG sing N N 174 TRP CB HB2 sing N N 175 TRP CB HB3 sing N N 176 TRP CG CD1 doub Y N 177 TRP CG CD2 sing Y N 178 TRP CD1 NE1 sing Y N 179 TRP CD1 HD1 sing N N 180 TRP CD2 CE2 doub Y N 181 TRP CD2 CE3 sing Y N 182 TRP NE1 CE2 sing Y N 183 TRP NE1 HE1 sing N N 184 TRP CE2 CZ2 sing Y N 185 TRP CE3 CZ3 doub Y N 186 TRP CE3 HE3 sing N N 187 TRP CZ2 CH2 doub Y N 188 TRP CZ2 HZ2 sing N N 189 TRP CZ3 CH2 sing Y N 190 TRP CZ3 HZ3 sing N N 191 TRP CH2 HH2 sing N N 192 TRP OXT HXT sing N N 193 # _pdbx_audit_support.funding_organization 'Other government' _pdbx_audit_support.country 'Russian Federation' _pdbx_audit_support.grant_number 'Russian Science Foundation 24-25-00160' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 700 ? 2 'AVANCE III' ? Bruker 800 ? # _atom_sites.entry_id 9WXK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #