HEADER VIRAL PROTEIN 03-OCT-25 9X23 TITLE RA22QT77 RBD IN COMPLEX WITH BAT ACE2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOTENSIN-CONVERTING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BAT ACE2; COMPND 5 EC: 3.4.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 9 CHAIN: S; COMPND 10 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: RA22QT77 RBD SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHINOLOPHUS FERRUMEQUINUM; SOURCE 3 ORGANISM_COMMON: GREATER HORSESHOE BAT; SOURCE 4 ORGANISM_TAXID: 59479; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: RHINOLOPHUS FERRUMEQUINUM CORONAVIRUS; SOURCE 9 ORGANISM_TAXID: 1487704; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COMPLEX, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.SATO,K.MATSUMOTO,H.S.OSHIMA,H.AKASAKA,K.SAWADA,O.NUREKI REVDAT 1 07-OCT-26 9X23 0 JRNL AUTH S.SATO,H.AKASAKA,O.NUREKI JRNL TITL RA22QT77 RBD IN COMPLEX WITH BAT ACE2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.510 REMARK 3 NUMBER OF PARTICLES : 468116 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9X23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1300064317. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BAT ACE2 COMPLEXED WITH REMARK 245 RA22QT77 RBD; BAT ACE2; REMARK 245 RA22QT77 RBD REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 81 4.45 -67.08 REMARK 500 GLU A 171 -60.20 -94.59 REMARK 500 HIS A 195 46.23 72.41 REMARK 500 ASN A 322 -179.45 -69.40 REMARK 500 ASP A 509 64.07 60.08 REMARK 500 ASP S 376 64.43 -102.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-66471 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF BAT ACE2 COMPLEXED WITH RA22QT77 RBD DBREF1 9X23 A 19 612 UNP A0A7D7J6S6_RHIAI DBREF2 9X23 A A0A7D7J6S6 19 612 DBREF1 9X23 S 321 497 UNP A0AA50AG07_9BETC DBREF2 9X23 S A0AA50AG07 321 497 SEQRES 1 A 594 SER THR THR GLU ASP ARG ALA LYS ILE PHE LEU ASP ASN SEQRES 2 A 594 PHE ASN HIS GLU ALA GLU ASP LEU SER TYR GLN SER SER SEQRES 3 A 594 LEU ALA SER TRP GLU TYR ASN THR ASN ILE SER ASP GLU SEQRES 4 A 594 ASN VAL GLN LYS MET ASP GLU ALA GLY ALA LYS TRP SER SEQRES 5 A 594 ALA PHE TYR GLU GLU GLN SER LYS LEU ALA LYS ASN TYR SEQRES 6 A 594 PRO LEU GLU GLU ILE GLN THR VAL PRO VAL LYS LEU GLN SEQRES 7 A 594 LEU GLN ILE LEU GLN GLN SER GLY SER PRO VAL LEU SER SEQRES 8 A 594 GLU ASP LYS SER LYS ARG LEU ASN SER ILE LEU ASN ALA SEQRES 9 A 594 MET SER THR ILE TYR SER THR GLY LYS VAL CYS LYS PRO SEQRES 10 A 594 ASN ASN PRO GLN GLU CYS PHE LEU LEU GLU PRO GLY LEU SEQRES 11 A 594 ASP ASN ILE MET GLY THR SER LYS ASP TYR ASN GLU ARG SEQRES 12 A 594 LEU TRP ALA TRP GLU GLY TRP ARG ALA GLU VAL GLY LYS SEQRES 13 A 594 GLN LEU ARG PRO LEU TYR GLU GLU TYR VAL ALA LEU LYS SEQRES 14 A 594 ASN GLU MET ALA ARG GLY TYR HIS TYR GLU ASP TYR GLY SEQRES 15 A 594 ASP TYR TRP ARG ARG ASP TYR GLU THR GLU GLU SER SER SEQRES 16 A 594 GLY SER GLY TYR SER ARG ASP GLN LEU MET LYS ASP VAL SEQRES 17 A 594 ASP ARG ILE PHE THR GLU ILE LYS PRO LEU TYR GLU HIS SEQRES 18 A 594 LEU HIS ALA TYR VAL ARG THR LYS LEU MET ASP THR TYR SEQRES 19 A 594 PRO PHE HIS ILE SER PRO THR GLY CYS LEU PRO ALA HIS SEQRES 20 A 594 LEU LEU GLY ASP MET TRP GLY ARG PHE TRP THR ASN LEU SEQRES 21 A 594 TYR PRO LEU THR VAL PRO PHE GLY GLN LYS PRO ASN ILE SEQRES 22 A 594 ASP VAL THR ASP ALA MET VAL ASN GLN GLY TRP ASP ALA SEQRES 23 A 594 ASN ARG ILE PHE LYS GLU ALA GLU LYS PHE PHE VAL SER SEQRES 24 A 594 VAL GLY LEU PRO ASN MET THR GLU GLY PHE TRP ASN ASN SEQRES 25 A 594 SER MET LEU THR GLU PRO GLY ASP GLY ARG LYS VAL VAL SEQRES 26 A 594 CYS HIS PRO THR ALA TRP ASP LEU GLY LYS GLY ASP PHE SEQRES 27 A 594 ARG ILE LYS MET CYS THR LYS VAL THR MET GLU ASP PHE SEQRES 28 A 594 LEU THR ALA HIS HIS GLU MET GLY HIS ILE GLN TYR ASP SEQRES 29 A 594 MET ALA TYR ALA THR GLN PRO TYR LEU LEU ARG ASN GLY SEQRES 30 A 594 ALA ASN GLU GLY PHE HIS GLU ALA VAL GLY GLU VAL MET SEQRES 31 A 594 SER LEU SER VAL ALA THR PRO LYS HIS LEU LYS THR MET SEQRES 32 A 594 GLY LEU LEU SER PRO ASP PHE LEU GLU ASP ASN GLU THR SEQRES 33 A 594 GLU ILE ASN PHE LEU LEU LYS GLN ALA LEU ASN ILE VAL SEQRES 34 A 594 GLY THR LEU PRO PHE THR TYR MET LEU GLU LYS TRP ARG SEQRES 35 A 594 TRP MET VAL PHE ARG GLY GLU ILE PRO LYS GLU GLU TRP SEQRES 36 A 594 MET LYS LYS TRP TRP GLU MET LYS ARG ASP LEU VAL GLY SEQRES 37 A 594 VAL VAL GLU PRO VAL PRO HIS ASP GLU THR TYR CYS ASP SEQRES 38 A 594 PRO ALA SER LEU PHE HIS VAL ALA ASN ASP TYR SER PHE SEQRES 39 A 594 ILE ARG TYR TYR THR ARG THR ILE PHE GLU PHE GLN PHE SEQRES 40 A 594 HIS GLU ALA LEU CYS ARG ILE ALA GLN HIS ASP GLY PRO SEQRES 41 A 594 LEU HIS LYS CYS ASP ILE SER ASN SER THR ASP ALA GLY SEQRES 42 A 594 LYS LYS LEU HIS GLN MET LEU SER VAL GLY LYS SER GLN SEQRES 43 A 594 PRO TRP THR VAL THR LEU LYS ASP ILE VAL ASP SER ARG SEQRES 44 A 594 ASN MET ASP VAL GLY PRO LEU LEU ARG TYR PHE GLU PRO SEQRES 45 A 594 LEU TYR THR TRP LEU GLN GLU GLN ASN ARG LYS SER TYR SEQRES 46 A 594 VAL GLY TRP ASN THR ASP TRP SER PRO SEQRES 1 S 177 ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR THR SEQRES 2 S 177 PHE ALA SER VAL TYR ALA TRP ASN ARG ARG ARG ILE SER SEQRES 3 S 177 ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN THR THR SEQRES 4 S 177 SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO THR SEQRES 5 S 177 LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SEQRES 6 S 177 SER PHE VAL VAL ARG GLY ASP GLU VAL ARG GLN ILE ALA SEQRES 7 S 177 PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR LYS SEQRES 8 S 177 LEU PRO ASP ASP PHE MET GLY CYS VAL ILE ALA TRP ASN SEQRES 9 S 177 SER ILE SER LEU ASP ALA GLY GLY SER TYR TYR TYR ARG SEQRES 10 S 177 LEU PHE ARG LYS SER VAL LEU LYS PRO PHE GLU ARG ASP SEQRES 11 S 177 ILE SER THR GLN LEU TYR GLN ALA GLY ASP THR PRO CYS SEQRES 12 S 177 SER VAL ALA GLY PRO ASP CYS TYR TYR PRO LEU GLN SER SEQRES 13 S 177 TYR TYR PHE GLN SER THR ASN GLY VAL GLY TYR GLN PRO SEQRES 14 S 177 TYR ARG VAL VAL VAL LEU SER PHE HELIX 1 AA1 THR A 20 ASN A 53 1 34 HELIX 2 AA2 SER A 55 LYS A 81 1 27 HELIX 3 AA3 ASN A 82 TYR A 83 5 2 HELIX 4 AA4 PRO A 84 ILE A 88 5 5 HELIX 5 AA5 THR A 90 GLN A 102 1 13 HELIX 6 AA6 SER A 109 THR A 129 1 21 HELIX 7 AA7 ASP A 149 SER A 155 1 7 HELIX 8 AA8 ASP A 157 TYR A 194 1 38 HELIX 9 AA9 ASP A 198 ARG A 204 1 7 HELIX 10 AB1 ARG A 205 TYR A 207 5 3 HELIX 11 AB2 GLU A 211 SER A 215 5 5 HELIX 12 AB3 SER A 218 TYR A 252 1 35 HELIX 13 AB4 HIS A 265 LEU A 267 5 3 HELIX 14 AB5 TRP A 275 ASN A 277 5 3 HELIX 15 AB6 LEU A 278 VAL A 283 1 6 HELIX 16 AB7 THR A 294 GLN A 300 1 7 HELIX 17 AB8 ASP A 303 VAL A 318 1 16 HELIX 18 AB9 THR A 324 SER A 331 1 8 HELIX 19 AC1 THR A 365 TYR A 385 1 21 HELIX 20 AC2 PRO A 389 ARG A 393 5 5 HELIX 21 AC3 GLY A 399 ALA A 413 1 15 HELIX 22 AC4 THR A 414 MET A 421 1 8 HELIX 23 AC5 ASP A 431 ARG A 465 1 35 HELIX 24 AC6 PRO A 469 GLU A 471 5 3 HELIX 25 AC7 GLU A 472 VAL A 485 1 14 HELIX 26 AC8 ASP A 499 SER A 502 5 4 HELIX 27 AC9 LEU A 503 ASN A 508 1 6 HELIX 28 AD1 PHE A 512 ALA A 533 1 22 HELIX 29 AD2 PRO A 538 CYS A 542 5 5 HELIX 30 AD3 SER A 547 GLY A 561 1 15 HELIX 31 AD4 PRO A 565 ASP A 575 1 11 HELIX 32 AD5 VAL A 581 PHE A 588 1 8 HELIX 33 AD6 PHE A 588 ASN A 599 1 12 HELIX 34 AD7 PRO S 324 ASN S 330 1 7 HELIX 35 AD8 TYR S 352 THR S 358 1 7 HELIX 36 AD9 SER S 370 ASN S 375 1 6 HELIX 37 AE1 GLU S 393 ILE S 397 5 5 HELIX 38 AE2 GLY S 403 ASN S 409 1 7 HELIX 39 AE3 SER S 425 ALA S 430 1 6 HELIX 40 AE4 GLY S 484 TYR S 487 5 4 SHEET 1 AA1 2 VAL A 132 CYS A 133 0 SHEET 2 AA1 2 CYS A 141 PHE A 142 -1 O PHE A 142 N VAL A 132 SHEET 1 AA2 2 LEU A 262 PRO A 263 0 SHEET 2 AA2 2 VAL A 487 VAL A 488 1 O VAL A 488 N LEU A 262 SHEET 1 AA3 2 THR A 347 GLY A 352 0 SHEET 2 AA3 2 ASP A 355 LYS A 359 -1 O ARG A 357 N TRP A 349 SHEET 1 AA4 5 ASN S 341 ILE S 345 0 SHEET 2 AA4 5 VAL S 382 ARG S 390 -1 O VAL S 382 N ILE S 345 SHEET 3 AA4 5 PRO S 489 SER S 496 -1 O VAL S 492 N PHE S 387 SHEET 4 AA4 5 GLY S 418 ASN S 424 -1 N ILE S 421 O VAL S 493 SHEET 5 AA4 5 THR S 363 TYR S 367 -1 N TYR S 367 O GLY S 418 SHEET 1 AA5 2 TYR S 435 ARG S 437 0 SHEET 2 AA5 2 LEU S 474 SER S 476 -1 O GLN S 475 N TYR S 436 SHEET 1 AA6 2 TYR S 456 GLN S 457 0 SHEET 2 AA6 2 CYS S 470 TYR S 471 -1 O TYR S 471 N TYR S 456 SSBOND 1 CYS A 133 CYS A 141 1555 1555 2.03 SSBOND 2 CYS A 344 CYS A 361 1555 1555 2.03 SSBOND 3 CYS A 530 CYS A 542 1555 1555 2.03 SSBOND 4 CYS S 323 CYS S 348 1555 1555 2.03 SSBOND 5 CYS S 366 CYS S 419 1555 1555 2.04 SSBOND 6 CYS S 463 CYS S 470 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 915 978 CONECT 978 915 CONECT 2658 2795 CONECT 2795 2658 CONECT 4199 4294 CONECT 4294 4199 CONECT 4891 5096 CONECT 5096 4891 CONECT 5239 5652 CONECT 5652 5239 CONECT 6007 6050 CONECT 6050 6007 MASTER 125 0 0 40 15 0 0 6 6280 2 12 60 END