HEADER HYDROLASE 19-OCT-25 9X8F TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL OF AN ALPHA-AMYLASE FAMILY TITLE 2 GLYCOSYL HYDROLASE FROM VIBRIO PARAHAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 GENE: HKB16_09485; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ALPHA-AMYLASE FAMILY GLYCOSYL HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.CHENG,B.LI REVDAT 1 29-APR-26 9X8F 0 JRNL AUTH Q.CHENG,B.LI JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL OF AN ALPHA-AMYLASE JRNL TITL 2 FAMILY GLYCOSYL HYDROLASE FROM VIBRIO PARAHAEMOLYTICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2775 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : 0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5132 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4598 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6973 ; 1.571 ; 1.797 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10600 ; 0.534 ; 1.759 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 6.826 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 9.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;13.153 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 748 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6185 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1213 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2531 ; 2.033 ; 2.760 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2531 ; 2.032 ; 2.760 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3162 ; 2.788 ; 4.949 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3163 ; 2.788 ; 4.949 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2601 ; 2.793 ; 2.989 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2602 ; 2.792 ; 2.990 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3812 ; 4.253 ; 5.373 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5833 ; 5.111 ;25.960 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5796 ; 5.083 ;25.770 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9X8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1300064848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 24.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 24.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 25% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, 0.1 M BIS-TRIS PH 5.5., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.96500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.38500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.98250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.38500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.94750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.38500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.98250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.38500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.94750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1228 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 478 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 58 -79.38 -99.66 REMARK 500 ASP A 74 94.02 -171.39 REMARK 500 TRP A 128 70.67 -114.23 REMARK 500 VAL A 168 -153.10 -118.56 REMARK 500 ASN A 306 50.75 -143.42 REMARK 500 GLN A 340 -114.91 -148.23 REMARK 500 ASN A 389 -168.43 -162.27 REMARK 500 GLN A 398 -52.87 -124.81 REMARK 500 ASP A 498 -115.89 56.52 REMARK 500 TRP A 536 82.99 -153.65 REMARK 500 ALA A 557 130.72 -38.97 REMARK 500 ASN A 603 -5.91 77.07 REMARK 500 ASN A 665 76.51 -151.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 471 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 OD1 REMARK 620 2 ASP A 62 O 85.8 REMARK 620 3 ASN A 66 OD1 94.6 93.8 REMARK 620 4 GLY A 83 O 81.6 166.5 92.0 REMARK 620 5 ASP A 85 OD2 87.4 81.5 174.8 93.1 REMARK 620 6 HOH A1148 O 163.8 109.0 78.3 84.1 100.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 166 OD1 REMARK 620 2 LYS A 235 O 159.0 REMARK 620 3 ASP A 244 OD1 72.7 124.9 REMARK 620 4 ASP A 244 OD2 120.0 80.7 51.0 REMARK 620 5 PHE A 279 O 76.9 82.1 139.8 162.0 REMARK 620 6 HOH A1047 O 115.3 62.4 134.9 94.7 82.0 REMARK 620 7 HOH A1100 O 73.5 119.3 75.6 73.8 119.9 66.0 REMARK 620 8 HOH A1153 O 96.9 80.6 71.0 84.5 87.4 142.5 146.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 170 OD1 REMARK 620 2 PHE A 172 O 85.0 REMARK 620 3 GLN A 238 OE1 162.9 109.3 REMARK 620 4 ASP A 241 O 79.6 163.1 84.9 REMARK 620 5 ASP A 241 OD1 91.1 90.3 79.9 83.1 REMARK 620 6 ASP A 243 OD1 102.6 89.5 87.2 100.6 166.3 REMARK 620 N 1 2 3 4 5 DBREF1 9X8F A 35 667 UNP A0A7Y0SH31_VIBPH DBREF2 9X8F A A0A7Y0SH31 35 667 SEQRES 1 A 633 ASP THR GLY SER HIS VAL ALA SER PRO ASP TRP GLN ASP SEQRES 2 A 633 GLN ILE ILE TYR PHE LEU MET ILE ASP ARG PHE ASN ASP SEQRES 3 A 633 GLY ASP SER ALA LEU ASN ASP GLN GLY GLN ASN GLU PHE SEQRES 4 A 633 ASP PRO THR SER ASP LYS LYS PHE SER GLY GLY ASP LEU SEQRES 5 A 633 VAL GLY VAL SER ASP LYS LEU SER TYR ILE GLU ASP LEU SEQRES 6 A 633 GLY ALA THR SER ILE TRP ILE THR PRO PRO VAL ALA ASN SEQRES 7 A 633 GLN TRP TRP ASP THR GLU GLN ASN TYR GLY GLY TYR HIS SEQRES 8 A 633 GLY TYR TRP ALA ARG ASP PHE GLN LYS VAL ASP GLU HIS SEQRES 9 A 633 PHE GLY ASP MET GLU SER TYR GLN ALA LEU ALA ARG GLU SEQRES 10 A 633 VAL HIS ALA ARG ASN MET PHE LEU ILE GLN ASP ILE VAL SEQRES 11 A 633 THR ASN HIS VAL GLY ASN PHE PHE THR TYR ASP ASP PRO SEQRES 12 A 633 TYR SER TYR ASP PRO SER LEU PRO CYS GLN GLY PHE ARG SEQRES 13 A 633 LEU ILE LYS ASN ALA LEU PRO ALA GLY GLN GLU LEU PRO SEQRES 14 A 633 TYR PRO LEU ASN MET ASN GLU CYS LYS THR ASP GLY THR SEQRES 15 A 633 GLY SER TYR HIS TRP THR PRO THR ILE THR ASP HIS ASN SEQRES 16 A 633 ASP PRO VAL GLN GLU LYS THR TRP GLN LEU SER ASP LEU SEQRES 17 A 633 ASP ASP LEU ASN THR SER ASP PRO GLU VAL ARG ALA TYR SEQRES 18 A 633 LEU LYS GLU SER TYR ARG LYS TRP ILE ARG GLU VAL GLY SEQRES 19 A 633 VAL ASP GLY PHE ARG ILE ASP THR VAL LYS PHE VAL GLU SEQRES 20 A 633 HIS ASP PHE TRP ASN ASP PHE LEU HIS ALA ASP ASP GLY SEQRES 21 A 633 VAL MET THR GLN ALA VAL ASP THR GLY ARG ASP ASN PHE SEQRES 22 A 633 LEU THR PHE GLY GLU VAL PHE GLU THR SER THR PRO TYR SEQRES 23 A 633 HIS THR GLU GLY GLU GLU LYS MET LEU THR TYR ILE GLY SEQRES 24 A 633 GLU SER GLY SER PRO LYS GLN LEU THR SER VAL LEU ASN SEQRES 25 A 633 PHE PRO LEU GLN ALA THR MET THR ARG VAL PHE ALA SER SEQRES 26 A 633 GLY GLN PRO THR ASP TYR LEU ARG PHE ARG LEU GLU LYS SEQRES 27 A 633 MET MET GLU MET PHE PRO ASN PRO TYR ILE MET PRO ASN SEQRES 28 A 633 PHE ILE ASP ASN HIS ASP MET PRO ARG PHE LEU SER GLN SEQRES 29 A 633 GLY SER VAL ASN ASP MET LYS GLN ALA LEU ILE THR MET SEQRES 30 A 633 MET SER VAL PRO GLY ILE PRO VAL ILE TYR GLN GLY THR SEQRES 31 A 633 GLU GLN ALA MET SER SER ALA ARG ASP ALA MET PHE ALA SEQRES 32 A 633 GLY GLY TYR ARG GLU ASP GLY ASN TYR VAL ASP SER PHE SEQRES 33 A 633 ASP GLN ASN SER GLU MET TYR LEU PHE ILE GLN GLU LEU SEQRES 34 A 633 ALA LYS LEU ARG THR GLU ASN ARG VAL MET THR ARG GLY SEQRES 35 A 633 GLU MET LYS VAL ILE GLY SER ASP LYS ALA GLY ALA GLY SEQRES 36 A 633 VAL PHE ALA PHE THR ARG THR LEU ASP ASN ASP GLU VAL SEQRES 37 A 633 LEU VAL VAL MET ASN THR SER ASN SER PRO MET LEU MET SEQRES 38 A 633 ASN GLN LEU ASP VAL GLU GLN VAL GLY GLY THR VAL PHE SEQRES 39 A 633 GLN GLN GLN ILE MET SER ASN TRP ALA GLU ALA PRO GLU SEQRES 40 A 633 GLN LEU ILE ALA ASP GLU ASN GLY HIS VAL THR LEU GLU SEQRES 41 A 633 LEU PRO ALA LYS SER ALA VAL ILE TYR SER LYS THR SER SEQRES 42 A 633 SER ASN GLN SER VAL ASN THR PRO ASP LEU ASN ILE GLN SEQRES 43 A 633 LEU ALA GLN ASP TRP GLU GLY LYS THR ILE THR GLY ASP SEQRES 44 A 633 ILE VAL ILE ALA GLY SER ALA ASN ALA ASN GLU LYS LEU SEQRES 45 A 633 ASN LEU VAL VAL ASP GLY ASN LEU GLU THR ALA GLN THR SEQRES 46 A 633 ILE THR VAL GLY ALA ASP GLY GLN PHE SER VAL THR LEU SEQRES 47 A 633 SER THR ARG HIS PHE ALA ILE GLY GLU GLN GLN HIS ARG SEQRES 48 A 633 PHE ALA ILE TYR SER THR GLU LYS LYS ALA GLY ILE GLU SEQRES 49 A 633 ASP VAL ASN PHE VAL SER ASN LEU SER HET MG A 901 1 HET MG A 902 1 HET MG A 903 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 3(MG 2+) FORMUL 5 HOH *274(H2 O) HELIX 1 AA1 ASP A 44 GLN A 48 5 5 HELIX 2 AA2 MET A 54 PHE A 58 5 5 HELIX 3 AA3 ASP A 62 ASN A 66 5 5 HELIX 4 AA4 ASP A 85 LYS A 92 1 8 HELIX 5 AA5 LYS A 92 GLY A 100 1 9 HELIX 6 AA6 ASP A 141 ARG A 155 1 15 HELIX 7 AA7 ASP A 230 TRP A 237 1 8 HELIX 8 AA8 ASP A 249 VAL A 267 1 19 HELIX 9 AA9 THR A 276 VAL A 280 5 5 HELIX 10 AB1 GLU A 281 ALA A 291 1 11 HELIX 11 AB2 GLY A 294 THR A 302 1 9 HELIX 12 AB3 THR A 322 THR A 330 1 9 HELIX 13 AB4 ASN A 346 ALA A 358 1 13 HELIX 14 AB5 THR A 363 PHE A 377 1 15 HELIX 15 AB6 ASN A 379 ILE A 382 5 4 HELIX 16 AB7 ARG A 394 GLN A 398 5 5 HELIX 17 AB8 SER A 400 SER A 413 1 14 HELIX 18 AB9 GLY A 423 ALA A 427 5 5 HELIX 19 AC1 SER A 454 ASN A 470 1 17 HELIX 20 AC2 ASN A 470 GLY A 476 1 7 SHEET 1 AA1 8 SER A 343 VAL A 344 0 SHEET 2 AA1 8 LEU A 308 GLY A 311 1 N THR A 309 O SER A 343 SHEET 3 AA1 8 GLY A 271 ILE A 274 1 N PHE A 272 O LEU A 308 SHEET 4 AA1 8 PHE A 158 ILE A 163 1 N ILE A 163 O ARG A 273 SHEET 5 AA1 8 SER A 103 ILE A 106 1 N ILE A 104 O ILE A 160 SHEET 6 AA1 8 ILE A 50 LEU A 53 1 N LEU A 53 O TRP A 105 SHEET 7 AA1 8 ILE A 417 TYR A 421 1 O ILE A 420 N PHE A 52 SHEET 8 AA1 8 PRO A 384 ASN A 385 1 N ASN A 385 O ILE A 417 SHEET 1 AA2 2 VAL A 110 ASN A 112 0 SHEET 2 AA2 2 ALA A 129 VAL A 135 -1 O ARG A 130 N ALA A 111 SHEET 1 AA3 2 TRP A 115 ASP A 116 0 SHEET 2 AA3 2 TYR A 121 GLY A 122 -1 O TYR A 121 N ASP A 116 SHEET 1 AA4 2 PHE A 172 TYR A 174 0 SHEET 2 AA4 2 PHE A 189 LEU A 191 -1 O ARG A 190 N THR A 173 SHEET 1 AA5 6 GLU A 477 GLY A 482 0 SHEET 2 AA5 6 VAL A 490 LEU A 497 -1 O THR A 494 N LYS A 479 SHEET 3 AA5 6 ASP A 500 ASN A 507 -1 O ASP A 500 N LEU A 497 SHEET 4 AA5 6 SER A 559 ASN A 569 -1 O LYS A 565 N GLU A 501 SHEET 5 AA5 6 THR A 526 SER A 534 -1 N GLN A 529 O SER A 564 SHEET 6 AA5 6 GLN A 542 ILE A 544 -1 O LEU A 543 N PHE A 528 SHEET 1 AA6 2 MET A 513 ASP A 519 0 SHEET 2 AA6 2 HIS A 550 LEU A 555 -1 O VAL A 551 N LEU A 518 SHEET 1 AA7 3 GLN A 580 LEU A 581 0 SHEET 2 AA7 3 ILE A 594 SER A 599 -1 O SER A 599 N GLN A 580 SHEET 3 AA7 3 GLN A 627 LEU A 632 -1 O VAL A 630 N ILE A 596 SHEET 1 AA8 5 THR A 589 ILE A 590 0 SHEET 2 AA8 5 VAL A 660 LEU A 666 1 O ASN A 665 N ILE A 590 SHEET 3 AA8 5 GLY A 640 SER A 650 -1 N GLN A 642 O SER A 664 SHEET 4 AA8 5 LYS A 605 VAL A 610 -1 N VAL A 609 O ALA A 647 SHEET 5 AA8 5 GLN A 618 THR A 621 -1 O ILE A 620 N LEU A 606 SHEET 1 AA9 4 THR A 589 ILE A 590 0 SHEET 2 AA9 4 VAL A 660 LEU A 666 1 O ASN A 665 N ILE A 590 SHEET 3 AA9 4 GLY A 640 SER A 650 -1 N GLN A 642 O SER A 664 SHEET 4 AA9 4 ALA A 655 GLY A 656 -1 O ALA A 655 N SER A 650 SSBOND 1 CYS A 186 CYS A 211 1555 1555 2.28 LINK OD1 ASP A 60 MG MG A 903 1555 1555 2.11 LINK O ASP A 62 MG MG A 903 1555 1555 2.30 LINK OD1 ASN A 66 MG MG A 903 1555 1555 2.25 LINK O GLY A 83 MG MG A 903 1555 1555 2.28 LINK OD2 ASP A 85 MG MG A 903 1555 1555 2.24 LINK OD1 ASN A 166 MG MG A 901 1555 1555 2.18 LINK OD1 ASN A 170 MG MG A 902 1555 1555 2.25 LINK O PHE A 172 MG MG A 902 1555 1555 2.21 LINK O LYS A 235 MG MG A 901 1555 1555 2.53 LINK OE1 GLN A 238 MG MG A 902 1555 1555 2.22 LINK O ASP A 241 MG MG A 902 1555 1555 2.15 LINK OD1 ASP A 241 MG MG A 902 1555 1555 2.27 LINK OD1 ASP A 243 MG MG A 902 1555 1555 2.29 LINK OD1 ASP A 244 MG MG A 901 1555 1555 2.58 LINK OD2 ASP A 244 MG MG A 901 1555 1555 2.45 LINK O PHE A 279 MG MG A 901 1555 1555 2.22 LINK MG MG A 901 O HOH A1047 1555 1555 2.73 LINK MG MG A 901 O HOH A1100 1555 1555 2.56 LINK MG MG A 901 O HOH A1153 1555 1555 2.36 LINK MG MG A 903 O HOH A1148 1555 1555 2.28 CISPEP 1 TYR A 204 PRO A 205 0 1.81 CRYST1 118.770 118.770 107.930 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009265 0.00000 CONECT 216 5018 CONECT 225 5018 CONECT 255 5018 CONECT 389 5018 CONECT 401 5018 CONECT 1066 5016 CONECT 1095 5017 CONECT 1111 5017 CONECT 1232 1428 CONECT 1428 1232 CONECT 1615 5016 CONECT 1649 5017 CONECT 1668 5017 CONECT 1671 5017 CONECT 1687 5017 CONECT 1695 5016 CONECT 1696 5016 CONECT 1985 5016 CONECT 5016 1066 1615 1695 1696 CONECT 5016 1985 5065 5118 5171 CONECT 5017 1095 1111 1649 1668 CONECT 5017 1671 1687 CONECT 5018 216 225 255 389 CONECT 5018 401 5166 CONECT 5065 5016 CONECT 5118 5016 CONECT 5166 5018 CONECT 5171 5016 MASTER 368 0 3 20 34 0 0 6 5291 1 28 49 END