HEADER IMMUNE SYSTEM 22-OCT-25 9X9Z TITLE STRUCTURE OF THE OMICRON BA.2.86 VARIANT SPIKE N-TERMINAL DOMAIN(NTD) TITLE 2 IN COMPLEX WITH THE ANTIBODY FAB FRAGMENT, C1717 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NTD; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: C1717 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: C1717 LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 STRAIN: BA.2.86; SOURCE 7 GENE: S, 2; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 STRAIN: OMICRON; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.J.ZHOU,G.F.GAO REVDAT 1 05-AUG-26 9X9Z 0 JRNL AUTH J.J.ZHOU,G.F.GAO JRNL TITL STRUCTURE OF THE OMICRON BA.2.86 VARIANT SPIKE N-TERMINAL JRNL TITL 2 DOMAIN(NTD)IN COMPLEX WITH THE ANTIBODY FAB FRAGMENT, C1717 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1100 - 5.6600 1.00 2787 150 0.1833 0.2124 REMARK 3 2 5.6600 - 4.5000 1.00 2673 159 0.1471 0.2004 REMARK 3 3 4.5000 - 3.9300 1.00 2679 144 0.1509 0.1763 REMARK 3 4 3.9300 - 3.5700 1.00 2690 136 0.1846 0.2547 REMARK 3 5 3.5700 - 3.3100 1.00 2633 167 0.1989 0.2760 REMARK 3 6 3.3100 - 3.1200 1.00 2679 124 0.2196 0.2879 REMARK 3 7 3.1200 - 2.9600 1.00 2674 137 0.2399 0.2986 REMARK 3 8 2.9600 - 2.8300 1.00 2658 153 0.2414 0.2933 REMARK 3 9 2.8300 - 2.7200 1.00 2656 132 0.2592 0.3602 REMARK 3 10 2.7200 - 2.6300 1.00 2611 143 0.2755 0.3455 REMARK 3 11 2.6300 - 2.5500 0.97 2637 100 0.2972 0.3152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.295 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5924 REMARK 3 ANGLE : 0.666 8073 REMARK 3 CHIRALITY : 0.047 960 REMARK 3 PLANARITY : 0.005 1010 REMARK 3 DIHEDRAL : 13.519 2368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.7037 -10.5174 41.6072 REMARK 3 T TENSOR REMARK 3 T11: 0.4240 T22: 0.2156 REMARK 3 T33: 0.2635 T12: -0.0080 REMARK 3 T13: -0.0191 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.1919 L22: 0.4645 REMARK 3 L33: 2.7216 L12: 0.1799 REMARK 3 L13: -0.5284 L23: -0.7293 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.0101 S13: -0.0117 REMARK 3 S21: -0.2038 S22: 0.1480 S23: 0.1262 REMARK 3 S31: 0.2878 S32: -0.4213 S33: -0.1169 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9X9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 24-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1300064864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30987 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM TARTRATE DIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.08450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 ASP H 225 REMARK 465 LYS H 226 REMARK 465 THR H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 29 52.24 -140.75 REMARK 500 PHE A 33 -120.49 54.57 REMARK 500 ASN A 86 -126.65 56.41 REMARK 500 THR A 107 -85.01 -120.00 REMARK 500 ASN A 121 -157.94 -113.04 REMARK 500 GLU A 178 -162.18 -129.20 REMARK 500 ARG A 211 38.38 -145.42 REMARK 500 LEU A 223 -66.85 -101.34 REMARK 500 TRP A 255 -7.26 71.51 REMARK 500 ASN A 277 -157.07 -79.23 REMARK 500 SER H 25 -178.30 60.13 REMARK 500 SER H 138 -126.92 62.02 REMARK 500 ASP H 152 68.76 62.01 REMARK 500 ASN L 28 -84.19 -113.97 REMARK 500 ASP L 52 -52.79 69.16 REMARK 500 ASP L 53 21.56 -143.77 REMARK 500 ALA L 85 -173.76 -178.27 REMARK 500 PRO L 145 105.79 -55.07 REMARK 500 LYS L 160 -40.16 69.74 REMARK 500 PRO L 212 70.65 -65.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 9X9Z A 14 302 UNP P0DTC2 SPIKE_SARS2 14 305 DBREF 9X9Z H 1 233 PDB 9X9Z 9X9Z 1 233 DBREF 9X9Z L 1 216 PDB 9X9Z 9X9Z 1 216 SEQADV 9X9Z MET A 17 UNP P0DTC2 INSERTION SEQADV 9X9Z PRO A 18 UNP P0DTC2 INSERTION SEQADV 9X9Z LEU A 19 UNP P0DTC2 INSERTION SEQADV 9X9Z PHE A 20 UNP P0DTC2 INSERTION SEQADV 9X9Z ILE A 23 UNP P0DTC2 THR 19 VARIANT SEQADV 9X9Z THR A 25 UNP P0DTC2 ARG 21 CONFLICT SEQADV 9X9Z A UNP P0DTC2 LEU 24 DELETION SEQADV 9X9Z A UNP P0DTC2 PRO 25 DELETION SEQADV 9X9Z A UNP P0DTC2 PRO 26 DELETION SEQADV 9X9Z SER A 28 UNP P0DTC2 ALA 27 VARIANT SEQADV 9X9Z LEU A 51 UNP P0DTC2 SER 50 CONFLICT SEQADV 9X9Z A UNP P0DTC2 HIS 69 DELETION SEQADV 9X9Z A UNP P0DTC2 VAL 70 DELETION SEQADV 9X9Z PHE A 126 UNP P0DTC2 VAL 127 CONFLICT SEQADV 9X9Z ASP A 141 UNP P0DTC2 GLY 142 VARIANT SEQADV 9X9Z A UNP P0DTC2 TYR 145 DELETION SEQADV 9X9Z SER A 155 UNP P0DTC2 PHE 157 CONFLICT SEQADV 9X9Z GLY A 156 UNP P0DTC2 ARG 158 CONFLICT SEQADV 9X9Z A UNP P0DTC2 ASN 211 DELETION SEQADV 9X9Z ILE A 209 UNP P0DTC2 LEU 212 VARIANT SEQADV 9X9Z GLY A 210 UNP P0DTC2 VAL 213 VARIANT SEQADV 9X9Z PHE A 213 UNP P0DTC2 LEU 216 CONFLICT SEQADV 9X9Z ASN A 242 UNP P0DTC2 HIS 245 CONFLICT SEQADV 9X9Z ASP A 261 UNP P0DTC2 ALA 264 CONFLICT SEQADV 9X9Z HIS A 303 UNP P0DTC2 EXPRESSION TAG SEQADV 9X9Z HIS A 304 UNP P0DTC2 EXPRESSION TAG SEQADV 9X9Z HIS A 305 UNP P0DTC2 EXPRESSION TAG SEQADV 9X9Z HIS A 306 UNP P0DTC2 EXPRESSION TAG SEQADV 9X9Z HIS A 307 UNP P0DTC2 EXPRESSION TAG SEQADV 9X9Z HIS A 308 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 295 GLN CYS VAL MET PRO LEU PHE ASN LEU ILE THR THR THR SEQRES 2 A 295 GLN SER TYR THR ASN SER PHE THR ARG GLY VAL TYR TYR SEQRES 3 A 295 PRO ASP LYS VAL PHE ARG SER SER VAL LEU HIS LEU THR SEQRES 4 A 295 GLN ASP LEU PHE LEU PRO PHE PHE SER ASN VAL THR TRP SEQRES 5 A 295 PHE HIS ALA ILE SER GLY THR ASN GLY THR LYS ARG PHE SEQRES 6 A 295 ASP ASN PRO VAL LEU PRO PHE ASN ASP GLY VAL TYR PHE SEQRES 7 A 295 ALA SER THR GLU LYS SER ASN ILE ILE ARG GLY TRP ILE SEQRES 8 A 295 PHE GLY THR THR LEU ASP SER LYS THR GLN SER LEU LEU SEQRES 9 A 295 ILE VAL ASN ASN ALA THR ASN VAL PHE ILE LYS VAL CYS SEQRES 10 A 295 GLU PHE GLN PHE CYS ASN ASP PRO PHE LEU ASP VAL TYR SEQRES 11 A 295 HIS LYS ASN ASN LYS SER TRP MET GLU SER GLU SER GLY SEQRES 12 A 295 VAL TYR SER SER ALA ASN ASN CYS THR PHE GLU TYR VAL SEQRES 13 A 295 SER GLN PRO PHE LEU MET ASP LEU GLU GLY LYS GLN GLY SEQRES 14 A 295 ASN PHE LYS ASN LEU ARG GLU PHE VAL PHE LYS ASN ILE SEQRES 15 A 295 ASP GLY TYR PHE LYS ILE TYR SER LYS HIS THR PRO ILE SEQRES 16 A 295 ILE GLY ARG ASP PHE PRO GLN GLY PHE SER ALA LEU GLU SEQRES 17 A 295 PRO LEU VAL ASP LEU PRO ILE GLY ILE ASN ILE THR ARG SEQRES 18 A 295 PHE GLN THR LEU LEU ALA LEU ASN ARG SER TYR LEU THR SEQRES 19 A 295 PRO GLY ASP SER SER SER GLY TRP THR ALA GLY ALA ALA SEQRES 20 A 295 ASP TYR TYR VAL GLY TYR LEU GLN PRO ARG THR PHE LEU SEQRES 21 A 295 LEU LYS TYR ASN GLU ASN GLY THR ILE THR ASP ALA VAL SEQRES 22 A 295 ASP CYS ALA LEU ASP PRO LEU SER GLU THR LYS CYS THR SEQRES 23 A 295 LEU LYS SER HIS HIS HIS HIS HIS HIS SEQRES 1 H 233 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 233 PRO GLY SER SER VAL LYS VAL SER CYS LYS THR SER GLY SEQRES 3 H 233 GLY THR PHE ASN SER PHE ALA ILE ASN TRP VAL ARG GLN SEQRES 4 H 233 ALA PRO GLY GLN GLY PRO GLU TRP MET GLY ARG VAL ILE SEQRES 5 H 233 PRO VAL LEU GLU ILE ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 233 GLY ARG ILE THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 H 233 ALA TYR MET GLU LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 233 ALA ILE TYR TYR CYS ALA ARG HIS HIS ILE ALA VAL ALA SEQRES 9 H 233 GLN PRO TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 233 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 233 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 233 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 233 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 233 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 233 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 233 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 233 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 233 LYS SER CYS ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 216 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 216 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 216 SER ASN ILE GLY SER ASN THR VAL ASN TRP TYR GLN HIS SEQRES 4 L 216 LEU PRO GLY THR ALA PRO LYS LEU LEU MET SER SER ASP SEQRES 5 L 216 ASP GLN ARG PRO SER GLY VAL PRO ALA ARG PHE SER GLY SEQRES 6 L 216 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 216 LEU ARG SER GLU ASP GLU ALA ASP TYR TYR CYS ALA SER SEQRES 8 L 216 TRP ASP ASP ARG LEU ASN GLY VAL VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET FUC C 4 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET FUC E 3 10 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG A 401 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 13(C8 H15 N O6) FORMUL 4 FUC 3(C6 H12 O5) FORMUL 5 BMA C6 H12 O6 FORMUL 11 HOH *121(H2 O) HELIX 1 AA1 SER A 244 THR A 247 5 4 HELIX 2 AA2 ASP A 291 SER A 302 1 12 HELIX 3 AA3 GLN H 62 GLN H 65 5 4 HELIX 4 AA4 THR H 87 THR H 91 5 5 HELIX 5 AA5 SER H 164 ALA H 166 5 3 HELIX 6 AA6 SER H 195 LEU H 197 5 3 HELIX 7 AA7 LYS H 209 ASN H 212 5 4 HELIX 8 AA8 ARG L 80 GLU L 84 5 5 HELIX 9 AA9 SER L 125 ALA L 131 1 7 HELIX 10 AB1 THR L 185 HIS L 192 1 8 SHEET 1 AA1 7 ASN A 21 ASN A 31 0 SHEET 2 AA1 7 ASN A 62 GLY A 71 -1 O VAL A 63 N THR A 30 SHEET 3 AA1 7 GLY A 258 TYR A 266 -1 O TYR A 262 N PHE A 66 SHEET 4 AA1 7 VAL A 89 THR A 94 -1 N TYR A 90 O GLY A 265 SHEET 5 AA1 7 ASN A 186 ILE A 195 -1 O ARG A 188 N SER A 93 SHEET 6 AA1 7 TYR A 198 PRO A 207 -1 O LYS A 204 N GLU A 189 SHEET 7 AA1 7 GLU A 221 PRO A 227 -1 O VAL A 224 N ILE A 201 SHEET 1 AA2 3 VAL A 48 PHE A 56 0 SHEET 2 AA2 3 GLN A 268 TYR A 276 -1 O PHE A 272 N THR A 52 SHEET 3 AA2 3 ILE A 282 ASP A 287 -1 O ASP A 284 N LYS A 275 SHEET 1 AA3 4 VAL A 82 PRO A 84 0 SHEET 2 AA3 4 ARG A 234 ASN A 242 -1 O PHE A 235 N LEU A 83 SHEET 3 AA3 4 LEU A 140 ASN A 146 1 N VAL A 142 O LEU A 241 SHEET 4 AA3 4 SER A 149 SER A 153 -1 O MET A 151 N TYR A 143 SHEET 1 AA4 6 VAL A 82 PRO A 84 0 SHEET 2 AA4 6 ARG A 234 ASN A 242 -1 O PHE A 235 N LEU A 83 SHEET 3 AA4 6 ILE A 100 GLY A 106 -1 N GLY A 106 O ARG A 234 SHEET 4 AA4 6 SER A 115 ASN A 120 -1 O ILE A 118 N TRP A 103 SHEET 5 AA4 6 VAL A 125 PHE A 134 -1 O PHE A 126 N VAL A 119 SHEET 6 AA4 6 TYR A 158 SER A 170 -1 O TYR A 168 N ILE A 127 SHEET 1 AA5 4 VAL H 5 GLN H 6 0 SHEET 2 AA5 4 VAL H 18 LYS H 23 -1 O LYS H 23 N VAL H 5 SHEET 3 AA5 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA5 4 ILE H 68 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA6 6 GLU H 10 LYS H 12 0 SHEET 2 AA6 6 THR H 115 VAL H 119 1 O LEU H 116 N GLU H 10 SHEET 3 AA6 6 ALA H 92 HIS H 100 -1 N ALA H 92 O VAL H 117 SHEET 4 AA6 6 PHE H 32 GLN H 39 -1 N ASN H 35 O ALA H 97 SHEET 5 AA6 6 GLU H 46 ILE H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA6 6 ILE H 57 TYR H 60 -1 O ILE H 57 N ILE H 52 SHEET 1 AA7 4 GLU H 10 LYS H 12 0 SHEET 2 AA7 4 THR H 115 VAL H 119 1 O LEU H 116 N GLU H 10 SHEET 3 AA7 4 ALA H 92 HIS H 100 -1 N ALA H 92 O VAL H 117 SHEET 4 AA7 4 TYR H 110 TRP H 111 -1 O TYR H 110 N ARG H 98 SHEET 1 AA8 4 SER H 128 LEU H 132 0 SHEET 2 AA8 4 THR H 143 TYR H 153 -1 O LYS H 151 N SER H 128 SHEET 3 AA8 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AA8 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AA9 4 SER H 128 LEU H 132 0 SHEET 2 AA9 4 THR H 143 TYR H 153 -1 O LYS H 151 N SER H 128 SHEET 3 AA9 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AA9 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AB1 3 THR H 159 TRP H 162 0 SHEET 2 AB1 3 TYR H 202 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 AB1 3 THR H 213 VAL H 219 -1 O VAL H 215 N VAL H 206 SHEET 1 AB2 5 SER L 9 GLY L 12 0 SHEET 2 AB2 5 THR L 105 VAL L 109 1 O THR L 108 N ALA L 10 SHEET 3 AB2 5 ALA L 85 ASP L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 AB2 5 VAL L 34 HIS L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 AB2 5 LYS L 46 MET L 49 -1 O LYS L 46 N GLN L 38 SHEET 1 AB3 4 SER L 9 GLY L 12 0 SHEET 2 AB3 4 THR L 105 VAL L 109 1 O THR L 108 N ALA L 10 SHEET 3 AB3 4 ALA L 85 ASP L 93 -1 N ALA L 85 O LEU L 107 SHEET 4 AB3 4 GLY L 98 PHE L 101 -1 O GLY L 98 N ASP L 93 SHEET 1 AB4 3 VAL L 18 SER L 23 0 SHEET 2 AB4 3 SER L 71 ILE L 76 -1 O ILE L 76 N VAL L 18 SHEET 3 AB4 3 PHE L 63 SER L 68 -1 N SER L 66 O SER L 73 SHEET 1 AB5 4 SER L 118 PHE L 122 0 SHEET 2 AB5 4 ALA L 134 PHE L 143 -1 O SER L 141 N SER L 118 SHEET 3 AB5 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB5 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AB6 4 SER L 118 PHE L 122 0 SHEET 2 AB6 4 ALA L 134 PHE L 143 -1 O SER L 141 N SER L 118 SHEET 3 AB6 4 TYR L 176 LEU L 184 -1 O SER L 180 N CYS L 138 SHEET 4 AB6 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AB7 4 SER L 157 PRO L 158 0 SHEET 2 AB7 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AB7 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AB7 4 SER L 204 VAL L 210 -1 O VAL L 206 N VAL L 199 SSBOND 1 CYS A 15 CYS A 135 1555 1555 2.03 SSBOND 2 CYS A 130 CYS A 164 1555 1555 2.03 SSBOND 3 CYS A 288 CYS A 298 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 5 CYS H 148 CYS H 204 1555 1555 2.03 SSBOND 6 CYS L 22 CYS L 89 1555 1555 2.03 SSBOND 7 CYS L 138 CYS L 197 1555 1555 2.04 LINK ND2 ASN A 62 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 73 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 121 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 163 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN A 231 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 242 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN A 279 C1 NAG A 401 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 4 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O6 NAG E 1 C1 FUC E 3 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.45 CISPEP 1 PHE H 154 PRO H 155 0 -3.00 CISPEP 2 GLU H 156 PRO H 157 0 1.12 CRYST1 72.790 58.169 112.070 90.00 90.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008923 0.00000 CONECT 15 986 CONECT 405 5563 CONECT 492 5601 CONECT 872 5650 CONECT 940 1219 CONECT 986 15 CONECT 1213 5678 CONECT 1219 940 CONECT 1768 5716 CONECT 1858 5744 CONECT 2153 5772 CONECT 2213 2286 CONECT 2286 2213 CONECT 2473 3047 CONECT 3047 2473 CONECT 3418 3832 CONECT 3832 3418 CONECT 4144 4634 CONECT 4634 4144 CONECT 4990 5444 CONECT 5444 4990 CONECT 5563 405 5564 5574 CONECT 5564 5563 5565 5571 CONECT 5565 5564 5566 5572 CONECT 5566 5565 5567 5573 CONECT 5567 5566 5568 5574 CONECT 5568 5567 5575 CONECT 5569 5570 5571 5576 CONECT 5570 5569 CONECT 5571 5564 5569 CONECT 5572 5565 CONECT 5573 5566 5577 CONECT 5574 5563 5567 CONECT 5575 5568 5591 CONECT 5576 5569 CONECT 5577 5573 5578 5588 CONECT 5578 5577 5579 5585 CONECT 5579 5578 5580 5586 CONECT 5580 5579 5581 5587 CONECT 5581 5580 5582 5588 CONECT 5582 5581 5589 CONECT 5583 5584 5585 5590 CONECT 5584 5583 CONECT 5585 5578 5583 CONECT 5586 5579 CONECT 5587 5580 CONECT 5588 5577 5581 CONECT 5589 5582 CONECT 5590 5583 CONECT 5591 5575 5592 5600 CONECT 5592 5591 5593 5597 CONECT 5593 5592 5594 5598 CONECT 5594 5593 5595 5599 CONECT 5595 5594 5596 5600 CONECT 5596 5595 CONECT 5597 5592 CONECT 5598 5593 CONECT 5599 5594 CONECT 5600 5591 5595 CONECT 5601 492 5602 5612 CONECT 5602 5601 5603 5609 CONECT 5603 5602 5604 5610 CONECT 5604 5603 5605 5611 CONECT 5605 5604 5606 5612 CONECT 5606 5605 5613 CONECT 5607 5608 5609 5614 CONECT 5608 5607 CONECT 5609 5602 5607 CONECT 5610 5603 CONECT 5611 5604 5615 CONECT 5612 5601 5605 CONECT 5613 5606 5640 CONECT 5614 5607 CONECT 5615 5611 5616 5626 CONECT 5616 5615 5617 5623 CONECT 5617 5616 5618 5624 CONECT 5618 5617 5619 5625 CONECT 5619 5618 5620 5626 CONECT 5620 5619 5627 CONECT 5621 5622 5623 5628 CONECT 5622 5621 CONECT 5623 5616 5621 CONECT 5624 5617 CONECT 5625 5618 5629 CONECT 5626 5615 5619 CONECT 5627 5620 CONECT 5628 5621 CONECT 5629 5625 5630 5638 CONECT 5630 5629 5631 5635 CONECT 5631 5630 5632 5636 CONECT 5632 5631 5633 5637 CONECT 5633 5632 5634 5638 CONECT 5634 5633 5639 CONECT 5635 5630 CONECT 5636 5631 CONECT 5637 5632 CONECT 5638 5629 5633 CONECT 5639 5634 CONECT 5640 5613 5641 5649 CONECT 5641 5640 5642 5646 CONECT 5642 5641 5643 5647 CONECT 5643 5642 5644 5648 CONECT 5644 5643 5645 5649 CONECT 5645 5644 CONECT 5646 5641 CONECT 5647 5642 CONECT 5648 5643 CONECT 5649 5640 5644 CONECT 5650 872 5651 5661 CONECT 5651 5650 5652 5658 CONECT 5652 5651 5653 5659 CONECT 5653 5652 5654 5660 CONECT 5654 5653 5655 5661 CONECT 5655 5654 5662 CONECT 5656 5657 5658 5663 CONECT 5657 5656 CONECT 5658 5651 5656 CONECT 5659 5652 CONECT 5660 5653 5664 CONECT 5661 5650 5654 CONECT 5662 5655 CONECT 5663 5656 CONECT 5664 5660 5665 5675 CONECT 5665 5664 5666 5672 CONECT 5666 5665 5667 5673 CONECT 5667 5666 5668 5674 CONECT 5668 5667 5669 5675 CONECT 5669 5668 5676 CONECT 5670 5671 5672 5677 CONECT 5671 5670 CONECT 5672 5665 5670 CONECT 5673 5666 CONECT 5674 5667 CONECT 5675 5664 5668 CONECT 5676 5669 CONECT 5677 5670 CONECT 5678 1213 5679 5689 CONECT 5679 5678 5680 5686 CONECT 5680 5679 5681 5687 CONECT 5681 5680 5682 5688 CONECT 5682 5681 5683 5689 CONECT 5683 5682 5690 CONECT 5684 5685 5686 5691 CONECT 5685 5684 CONECT 5686 5679 5684 CONECT 5687 5680 CONECT 5688 5681 5692 CONECT 5689 5678 5682 CONECT 5690 5683 5706 CONECT 5691 5684 CONECT 5692 5688 5693 5703 CONECT 5693 5692 5694 5700 CONECT 5694 5693 5695 5701 CONECT 5695 5694 5696 5702 CONECT 5696 5695 5697 5703 CONECT 5697 5696 5704 CONECT 5698 5699 5700 5705 CONECT 5699 5698 CONECT 5700 5693 5698 CONECT 5701 5694 CONECT 5702 5695 CONECT 5703 5692 5696 CONECT 5704 5697 CONECT 5705 5698 CONECT 5706 5690 5707 5715 CONECT 5707 5706 5708 5712 CONECT 5708 5707 5709 5713 CONECT 5709 5708 5710 5714 CONECT 5710 5709 5711 5715 CONECT 5711 5710 CONECT 5712 5707 CONECT 5713 5708 CONECT 5714 5709 CONECT 5715 5706 5710 CONECT 5716 1768 5717 5727 CONECT 5717 5716 5718 5724 CONECT 5718 5717 5719 5725 CONECT 5719 5718 5720 5726 CONECT 5720 5719 5721 5727 CONECT 5721 5720 5728 CONECT 5722 5723 5724 5729 CONECT 5723 5722 CONECT 5724 5717 5722 CONECT 5725 5718 CONECT 5726 5719 5730 CONECT 5727 5716 5720 CONECT 5728 5721 CONECT 5729 5722 CONECT 5730 5726 5731 5741 CONECT 5731 5730 5732 5738 CONECT 5732 5731 5733 5739 CONECT 5733 5732 5734 5740 CONECT 5734 5733 5735 5741 CONECT 5735 5734 5742 CONECT 5736 5737 5738 5743 CONECT 5737 5736 CONECT 5738 5731 5736 CONECT 5739 5732 CONECT 5740 5733 CONECT 5741 5730 5734 CONECT 5742 5735 CONECT 5743 5736 CONECT 5744 1858 5745 5755 CONECT 5745 5744 5746 5752 CONECT 5746 5745 5747 5753 CONECT 5747 5746 5748 5754 CONECT 5748 5747 5749 5755 CONECT 5749 5748 5756 CONECT 5750 5751 5752 5757 CONECT 5751 5750 CONECT 5752 5745 5750 CONECT 5753 5746 CONECT 5754 5747 5758 CONECT 5755 5744 5748 CONECT 5756 5749 CONECT 5757 5750 CONECT 5758 5754 5759 5769 CONECT 5759 5758 5760 5766 CONECT 5760 5759 5761 5767 CONECT 5761 5760 5762 5768 CONECT 5762 5761 5763 5769 CONECT 5763 5762 5770 CONECT 5764 5765 5766 5771 CONECT 5765 5764 CONECT 5766 5759 5764 CONECT 5767 5760 CONECT 5768 5761 CONECT 5769 5758 5762 CONECT 5770 5763 CONECT 5771 5764 CONECT 5772 2153 5773 5783 CONECT 5773 5772 5774 5780 CONECT 5774 5773 5775 5781 CONECT 5775 5774 5776 5782 CONECT 5776 5775 5777 5783 CONECT 5777 5776 5784 CONECT 5778 5779 5780 5785 CONECT 5779 5778 CONECT 5780 5773 5778 CONECT 5781 5774 CONECT 5782 5775 CONECT 5783 5772 5776 CONECT 5784 5777 CONECT 5785 5778 MASTER 272 0 17 10 69 0 0 6 5903 3 244 58 END