HEADER IMMUNE SYSTEM 22-OCT-25 9XA4 TITLE STRUCTURE OF THE OMICRON BA.4/5 SPIKE N-TERMINAL DOMAIN(NTD) IN TITLE 2 COMPLEX WITH THE AC2 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: AC2 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AC2 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: NTD; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 13 2; SOURCE 14 ORGANISM_TAXID: 2697049; SOURCE 15 STRAIN: BA.4/5; SOURCE 16 GENE: S, 2; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.J.ZHOU,G.F.GAO REVDAT 1 05-AUG-26 9XA4 0 JRNL AUTH J.J.ZHOU,G.F.GAO JRNL TITL STRUCTURE OF THE OMICRON BA.4/5 SPIKE N-TERMINAL DOMAIN(NTD) JRNL TITL 2 IN COMPLEX WITH THE AC2 FAB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.8700 - 6.0700 0.99 2755 148 0.2142 0.2539 REMARK 3 2 6.0700 - 4.8200 1.00 2686 152 0.2043 0.2154 REMARK 3 3 4.8200 - 4.2100 1.00 2690 130 0.1775 0.1988 REMARK 3 4 4.2100 - 3.8300 1.00 2645 154 0.2101 0.2550 REMARK 3 5 3.8300 - 3.5500 1.00 2656 147 0.2161 0.2721 REMARK 3 6 3.5500 - 3.3400 0.99 2654 149 0.2452 0.2727 REMARK 3 7 3.3400 - 3.1800 0.99 2663 131 0.2386 0.2663 REMARK 3 8 3.1700 - 3.0400 0.99 2643 149 0.2360 0.3057 REMARK 3 9 3.0400 - 2.9200 0.99 2596 152 0.2406 0.2746 REMARK 3 10 2.9200 - 2.8200 0.99 2625 149 0.2710 0.3123 REMARK 3 11 2.8200 - 2.7300 0.99 2638 141 0.2893 0.3475 REMARK 3 12 2.7300 - 2.6500 0.99 2636 120 0.2659 0.3015 REMARK 3 13 2.6500 - 2.5800 0.99 2609 133 0.2665 0.2869 REMARK 3 14 2.5800 - 2.5200 0.99 2663 127 0.2775 0.3129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5730 REMARK 3 ANGLE : 1.058 7775 REMARK 3 CHIRALITY : 0.058 906 REMARK 3 PLANARITY : 0.008 974 REMARK 3 DIHEDRAL : 7.736 819 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 24-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1300064971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39178 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 52.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M LITHIUM SULFATE MONOHYDRATE, REMARK 280 0.085 M TRIS HYDROCHLORIDE PH 8.5, 25.5% W/V POLYETHYLENE GLYCOL REMARK 280 4,000, 15% V/V GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.78400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.67650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.78400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.67650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 231 REMARK 465 LYS H 232 REMARK 465 THR H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 465 HIS H 239 REMARK 465 HIS H 240 REMARK 465 GLN A 14 REMARK 465 TYR A 139 REMARK 465 TYR A 140 REMARK 465 HIS A 141 REMARK 465 LYS A 142 REMARK 465 ASN A 143 REMARK 465 ASN A 144 REMARK 465 LYS A 145 REMARK 465 SER A 146 REMARK 465 TRP A 147 REMARK 465 HIS A 240 REMARK 465 ARG A 241 REMARK 465 SER A 242 REMARK 465 TYR A 243 REMARK 465 LEU A 244 REMARK 465 THR A 245 REMARK 465 PRO A 246 REMARK 465 GLY A 247 REMARK 465 ASP A 248 REMARK 465 SER A 249 REMARK 465 SER A 250 REMARK 465 SER A 251 REMARK 465 GLY A 252 REMARK 465 LYS A 299 REMARK 465 SER A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP H 57 O HOH H 401 1.91 REMARK 500 O HOH H 414 O HOH H 434 2.07 REMARK 500 O GLU L 59 O HOH L 401 2.07 REMARK 500 O THR H 19 O HOH H 402 2.11 REMARK 500 O PRO L 8 O HOH L 402 2.12 REMARK 500 N GLY L 201 O HOH L 403 2.14 REMARK 500 O GLN H 206 O HOH H 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 440 O HOH H 436 4546 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 50 -43.97 75.53 REMARK 500 SER L 66 75.76 -163.95 REMARK 500 ASP L 91 -175.10 -67.14 REMARK 500 ASP L 153 -101.59 54.90 REMARK 500 THR H 15 -6.54 58.94 REMARK 500 LEU H 50 -64.08 -101.54 REMARK 500 ASP H 57 16.92 56.39 REMARK 500 THR H 130 128.89 -38.99 REMARK 500 SER H 144 32.74 -81.13 REMARK 500 SER H 146 47.86 78.60 REMARK 500 PHE H 160 143.75 -173.86 REMARK 500 SER H 229 52.15 -97.99 REMARK 500 PHE A 29 -143.62 59.69 REMARK 500 THR A 103 -80.73 -119.55 REMARK 500 ASP A 133 79.96 -109.44 REMARK 500 ASP A 173 -153.77 -167.72 REMARK 500 LEU A 221 -67.15 -95.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 9XA4 L 0 214 PDB 9XA4 9XA4 0 214 DBREF 9XA4 H 1 240 PDB 9XA4 9XA4 1 240 DBREF 9XA4 A 14 300 UNP P0DTC2 SPIKE_SARS2 14 305 SEQADV 9XA4 ILE A 19 UNP P0DTC2 THR 19 VARIANT SEQADV 9XA4 A UNP P0DTC2 LEU 24 DELETION SEQADV 9XA4 A UNP P0DTC2 PRO 25 DELETION SEQADV 9XA4 A UNP P0DTC2 PRO 26 DELETION SEQADV 9XA4 SER A 24 UNP P0DTC2 ALA 27 VARIANT SEQADV 9XA4 A UNP P0DTC2 HIS 69 DELETION SEQADV 9XA4 A UNP P0DTC2 VAL 70 DELETION SEQADV 9XA4 ASP A 137 UNP P0DTC2 GLY 142 VARIANT SEQADV 9XA4 GLY A 208 UNP P0DTC2 VAL 213 VARIANT SEQADV 9XA4 HIS A 301 UNP P0DTC2 EXPRESSION TAG SEQADV 9XA4 HIS A 302 UNP P0DTC2 EXPRESSION TAG SEQADV 9XA4 HIS A 303 UNP P0DTC2 EXPRESSION TAG SEQADV 9XA4 HIS A 304 UNP P0DTC2 EXPRESSION TAG SEQADV 9XA4 HIS A 305 UNP P0DTC2 EXPRESSION TAG SEQADV 9XA4 HIS A 306 UNP P0DTC2 EXPRESSION TAG SEQRES 1 L 215 ASP SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL SEQRES 2 L 215 SER PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY ASP SEQRES 3 L 215 ALA LEU PRO LYS GLN TYR VAL TYR TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY GLN ALA PRO VAL LEU VAL ILE TYR LYS ASP SER SEQRES 5 L 215 GLU ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SEQRES 6 L 215 SER SER GLY THR THR VAL THR LEU THR ILE SER GLY VAL SEQRES 7 L 215 GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SER ALA SEQRES 8 L 215 ASP SER SER GLY THR TYR GLN VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 L 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 L 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 L 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 L 215 VAL ALA PRO THR GLU CYS SER SEQRES 1 H 240 GLN VAL THR LEU ARG GLU SER GLY PRO ALA LEU VAL LYS SEQRES 2 H 240 PRO THR GLN THR LEU THR LEU THR CYS THR PHE SER GLY SEQRES 3 H 240 PHE SER LEU SER THR SER GLY MET CYS VAL SER TRP ILE SEQRES 4 H 240 ARG GLN PRO PRO GLY LYS ALA LEU GLU TRP LEU ALA LEU SEQRES 5 H 240 ILE ASP TRP ASP ASP ASP LYS TYR TYR SER THR SER LEU SEQRES 6 H 240 LYS THR ARG LEU THR ILE SER LYS ASP THR SER LYS ASN SEQRES 7 H 240 GLN VAL VAL LEU THR MET THR ASN MET ASP PRO VAL ASP SEQRES 8 H 240 THR ALA THR TYR TYR CYS ALA ARG MET ARG ALA THR VAL SEQRES 9 H 240 THR PRO THR THR TYR TYR TYR TYR GLY MET ASP VAL TRP SEQRES 10 H 240 GLY GLN GLY THR THR VAL THR VAL SER SER ALA SER THR SEQRES 11 H 240 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 240 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 240 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 240 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 240 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 240 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 240 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 240 ASP LYS ARG VAL GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 19 H 240 HIS HIS HIS HIS HIS HIS SEQRES 1 A 293 GLN CYS VAL ASN LEU ILE THR ARG THR GLN SER TYR THR SEQRES 2 A 293 ASN SER PHE THR ARG GLY VAL TYR TYR PRO ASP LYS VAL SEQRES 3 A 293 PHE ARG SER SER VAL LEU HIS SER THR GLN ASP LEU PHE SEQRES 4 A 293 LEU PRO PHE PHE SER ASN VAL THR TRP PHE HIS ALA ILE SEQRES 5 A 293 SER GLY THR ASN GLY THR LYS ARG PHE ASP ASN PRO VAL SEQRES 6 A 293 LEU PRO PHE ASN ASP GLY VAL TYR PHE ALA SER THR GLU SEQRES 7 A 293 LYS SER ASN ILE ILE ARG GLY TRP ILE PHE GLY THR THR SEQRES 8 A 293 LEU ASP SER LYS THR GLN SER LEU LEU ILE VAL ASN ASN SEQRES 9 A 293 ALA THR ASN VAL VAL ILE LYS VAL CYS GLU PHE GLN PHE SEQRES 10 A 293 CYS ASN ASP PRO PHE LEU ASP VAL TYR TYR HIS LYS ASN SEQRES 11 A 293 ASN LYS SER TRP MET GLU SER GLU PHE ARG VAL TYR SER SEQRES 12 A 293 SER ALA ASN ASN CYS THR PHE GLU TYR VAL SER GLN PRO SEQRES 13 A 293 PHE LEU MET ASP LEU GLU GLY LYS GLN GLY ASN PHE LYS SEQRES 14 A 293 ASN LEU ARG GLU PHE VAL PHE LYS ASN ILE ASP GLY TYR SEQRES 15 A 293 PHE LYS ILE TYR SER LYS HIS THR PRO ILE ASN LEU GLY SEQRES 16 A 293 ARG ASP LEU PRO GLN GLY PHE SER ALA LEU GLU PRO LEU SEQRES 17 A 293 VAL ASP LEU PRO ILE GLY ILE ASN ILE THR ARG PHE GLN SEQRES 18 A 293 THR LEU LEU ALA LEU HIS ARG SER TYR LEU THR PRO GLY SEQRES 19 A 293 ASP SER SER SER GLY TRP THR ALA GLY ALA ALA ALA TYR SEQRES 20 A 293 TYR VAL GLY TYR LEU GLN PRO ARG THR PHE LEU LEU LYS SEQRES 21 A 293 TYR ASN GLU ASN GLY THR ILE THR ASP ALA VAL ASP CYS SEQRES 22 A 293 ALA LEU ASP PRO LEU SER GLU THR LYS CYS THR LEU LYS SEQRES 23 A 293 SER HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET EDO L 301 4 HET EDO L 302 4 HET EDO L 303 4 HET EDO L 304 4 HET EDO L 305 4 HET EDO L 306 4 HET EDO L 307 4 HET EDO L 308 4 HET EDO L 309 4 HET EDO L 310 4 HET EDO L 311 4 HET EDO H 301 4 HET EDO H 302 4 HET EDO H 303 4 HET EDO H 304 4 HET EDO H 305 4 HET EDO H 306 4 HET EDO H 307 4 HET EDO H 308 4 HET EDO H 309 4 HET EDO H 310 4 HET NAG A 401 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 5 BMA C6 H12 O6 FORMUL 6 EDO 21(C2 H6 O2) FORMUL 28 HOH *90(H2 O) HELIX 1 AA1 GLN L 78 GLU L 82 5 5 HELIX 2 AA2 SER L 123 ALA L 129 1 7 HELIX 3 AA3 THR L 183 HIS L 190 1 8 HELIX 4 AA4 LEU H 65 THR H 67 5 3 HELIX 5 AA5 ASP H 88 THR H 92 5 5 HELIX 6 AA6 SER H 170 ALA H 172 5 3 HELIX 7 AA7 SER H 201 LEU H 203 5 3 HELIX 8 AA8 LYS H 215 ASN H 218 5 4 HELIX 9 AA9 ASP A 289 LEU A 298 1 10 SHEET 1 AA1 5 SER L 9 VAL L 12 0 SHEET 2 AA1 5 THR L 103 VAL L 107 1 O LYS L 104 N VAL L 10 SHEET 3 AA1 5 ALA L 83 ALA L 90 -1 N ALA L 83 O LEU L 105 SHEET 4 AA1 5 TYR L 33 GLN L 37 -1 N GLN L 37 O ASP L 84 SHEET 5 AA1 5 VAL L 44 ILE L 47 -1 O VAL L 44 N GLN L 36 SHEET 1 AA2 4 SER L 9 VAL L 12 0 SHEET 2 AA2 4 THR L 103 VAL L 107 1 O LYS L 104 N VAL L 10 SHEET 3 AA2 4 ALA L 83 ALA L 90 -1 N ALA L 83 O LEU L 105 SHEET 4 AA2 4 GLN L 97 PHE L 99 -1 O VAL L 98 N SER L 89 SHEET 1 AA3 3 ALA L 18 SER L 23 0 SHEET 2 AA3 3 THR L 69 ILE L 74 -1 O LEU L 72 N ILE L 20 SHEET 3 AA3 3 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AA4 4 SER L 116 PHE L 120 0 SHEET 2 AA4 4 ALA L 132 PHE L 141 -1 O LEU L 137 N THR L 118 SHEET 3 AA4 4 TYR L 174 LEU L 182 -1 O TYR L 174 N PHE L 141 SHEET 4 AA4 4 VAL L 161 THR L 163 -1 N GLU L 162 O TYR L 179 SHEET 1 AA5 4 SER L 116 PHE L 120 0 SHEET 2 AA5 4 ALA L 132 PHE L 141 -1 O LEU L 137 N THR L 118 SHEET 3 AA5 4 TYR L 174 LEU L 182 -1 O TYR L 174 N PHE L 141 SHEET 4 AA5 4 SER L 167 LYS L 168 -1 N SER L 167 O ALA L 175 SHEET 1 AA6 4 SER L 155 VAL L 157 0 SHEET 2 AA6 4 THR L 147 ALA L 152 -1 N ALA L 152 O SER L 155 SHEET 3 AA6 4 TYR L 193 HIS L 199 -1 O GLN L 196 N ALA L 149 SHEET 4 AA6 4 SER L 202 VAL L 208 -1 O VAL L 204 N VAL L 197 SHEET 1 AA7 4 THR H 3 SER H 7 0 SHEET 2 AA7 4 THR H 17 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AA7 4 GLN H 79 THR H 85 -1 O LEU H 82 N LEU H 20 SHEET 4 AA7 4 LEU H 69 ASP H 74 -1 N SER H 72 O VAL H 81 SHEET 1 AA8 6 LEU H 11 VAL H 12 0 SHEET 2 AA8 6 THR H 121 VAL H 125 1 O THR H 124 N VAL H 12 SHEET 3 AA8 6 ALA H 93 VAL H 104 -1 N ALA H 93 O VAL H 123 SHEET 4 AA8 6 MET H 34 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 AA8 6 GLU H 48 ILE H 53 -1 O GLU H 48 N ARG H 40 SHEET 6 AA8 6 LYS H 59 TYR H 61 -1 O TYR H 60 N LEU H 52 SHEET 1 AA9 4 LEU H 11 VAL H 12 0 SHEET 2 AA9 4 THR H 121 VAL H 125 1 O THR H 124 N VAL H 12 SHEET 3 AA9 4 ALA H 93 VAL H 104 -1 N ALA H 93 O VAL H 123 SHEET 4 AA9 4 TYR H 109 TRP H 117 -1 O TYR H 112 N ARG H 101 SHEET 1 AB1 4 SER H 134 LEU H 138 0 SHEET 2 AB1 4 THR H 149 TYR H 159 -1 O LYS H 157 N SER H 134 SHEET 3 AB1 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AB1 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AB2 4 SER H 134 LEU H 138 0 SHEET 2 AB2 4 THR H 149 TYR H 159 -1 O LYS H 157 N SER H 134 SHEET 3 AB2 4 TYR H 190 PRO H 199 -1 O LEU H 192 N VAL H 156 SHEET 4 AB2 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AB3 3 THR H 165 TRP H 168 0 SHEET 2 AB3 3 TYR H 208 HIS H 214 -1 O ASN H 213 N THR H 165 SHEET 3 AB3 3 THR H 219 VAL H 225 -1 O VAL H 221 N VAL H 212 SHEET 1 AB4 7 THR A 20 ASN A 27 0 SHEET 2 AB4 7 ASN A 58 ILE A 65 -1 O ILE A 65 N THR A 20 SHEET 3 AB4 7 ALA A 257 TYR A 264 -1 O TYR A 260 N PHE A 62 SHEET 4 AB4 7 VAL A 85 SER A 89 -1 N TYR A 86 O GLY A 263 SHEET 5 AB4 7 PHE A 181 ILE A 192 -1 O ARG A 185 N SER A 89 SHEET 6 AB4 7 TYR A 195 ASN A 206 -1 O ILE A 205 N LYS A 182 SHEET 7 AB4 7 GLU A 219 PRO A 225 -1 O LEU A 224 N PHE A 196 SHEET 1 AB5 3 LEU A 45 THR A 48 0 SHEET 2 AB5 3 PHE A 270 LYS A 273 -1 O PHE A 270 N THR A 48 SHEET 3 AB5 3 ASP A 282 ASP A 285 -1 O ASP A 282 N LYS A 273 SHEET 1 AB6 2 LEU A 51 PHE A 52 0 SHEET 2 AB6 2 GLN A 266 PRO A 267 -1 O GLN A 266 N PHE A 52 SHEET 1 AB7 6 LEU A 79 PRO A 80 0 SHEET 2 AB7 6 ARG A 232 LEU A 239 -1 O PHE A 233 N LEU A 79 SHEET 3 AB7 6 ILE A 96 GLY A 102 -1 N ILE A 100 O GLN A 234 SHEET 4 AB7 6 SER A 111 ASN A 116 -1 O LEU A 112 N PHE A 101 SHEET 5 AB7 6 VAL A 121 ASP A 137 -1 O CYS A 126 N SER A 111 SHEET 6 AB7 6 GLU A 151 SER A 167 -1 O VAL A 154 N CYS A 131 SHEET 1 AB8 4 LEU A 79 PRO A 80 0 SHEET 2 AB8 4 ARG A 232 LEU A 239 -1 O PHE A 233 N LEU A 79 SHEET 3 AB8 4 VAL A 121 ASP A 137 1 N LEU A 136 O LEU A 239 SHEET 4 AB8 4 GLU A 151 SER A 167 -1 O VAL A 154 N CYS A 131 SSBOND 1 CYS L 22 CYS L 87 1555 1555 2.09 SSBOND 2 CYS L 136 CYS L 195 1555 1555 2.02 SSBOND 3 CYS L 213 CYS H 230 1555 1555 2.05 SSBOND 4 CYS H 22 CYS H 97 1555 1555 2.10 SSBOND 5 CYS H 154 CYS H 210 1555 1555 2.05 SSBOND 6 CYS A 15 CYS A 131 1555 1555 2.03 SSBOND 7 CYS A 126 CYS A 161 1555 1555 2.04 SSBOND 8 CYS A 286 CYS A 296 1555 1555 2.04 LINK ND2 ASN A 117 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 160 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 229 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.40 CISPEP 1 TYR L 142 PRO L 143 0 -7.08 CISPEP 2 PHE H 160 PRO H 161 0 -15.16 CISPEP 3 GLU H 162 PRO H 163 0 -2.86 CRYST1 107.568 71.353 155.592 90.00 100.58 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009296 0.000000 0.001736 0.00000 SCALE2 0.000000 0.014015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006538 0.00000 CONECT 169 672 CONECT 672 169 CONECT 1021 1475 CONECT 1475 1021 CONECT 1607 3351 CONECT 1778 2372 CONECT 2372 1778 CONECT 2779 3193 CONECT 3193 2779 CONECT 3351 1607 CONECT 3358 4293 CONECT 4183 5483 CONECT 4247 4462 CONECT 4293 3358 CONECT 4456 5606 CONECT 4462 4247 CONECT 5016 5455 CONECT 5365 5438 CONECT 5438 5365 CONECT 5455 5016 5456 5466 CONECT 5456 5455 5457 5463 CONECT 5457 5456 5458 5464 CONECT 5458 5457 5459 5465 CONECT 5459 5458 5460 5466 CONECT 5460 5459 5467 CONECT 5461 5462 5463 5468 CONECT 5462 5461 CONECT 5463 5456 5461 CONECT 5464 5457 CONECT 5465 5458 5469 CONECT 5466 5455 5459 CONECT 5467 5460 CONECT 5468 5461 CONECT 5469 5465 5470 5480 CONECT 5470 5469 5471 5477 CONECT 5471 5470 5472 5478 CONECT 5472 5471 5473 5479 CONECT 5473 5472 5474 5480 CONECT 5474 5473 5481 CONECT 5475 5476 5477 5482 CONECT 5476 5475 CONECT 5477 5470 5475 CONECT 5478 5471 CONECT 5479 5472 CONECT 5480 5469 5473 CONECT 5481 5474 CONECT 5482 5475 CONECT 5483 4183 5484 5494 CONECT 5484 5483 5485 5491 CONECT 5485 5484 5486 5492 CONECT 5486 5485 5487 5493 CONECT 5487 5486 5488 5494 CONECT 5488 5487 5495 CONECT 5489 5490 5491 5496 CONECT 5490 5489 CONECT 5491 5484 5489 CONECT 5492 5485 CONECT 5493 5486 5497 CONECT 5494 5483 5487 CONECT 5495 5488 CONECT 5496 5489 CONECT 5497 5493 5498 5508 CONECT 5498 5497 5499 5505 CONECT 5499 5498 5500 5506 CONECT 5500 5499 5501 5507 CONECT 5501 5500 5502 5508 CONECT 5502 5501 5509 CONECT 5503 5504 5505 5510 CONECT 5504 5503 CONECT 5505 5498 5503 CONECT 5506 5499 CONECT 5507 5500 5511 CONECT 5508 5497 5501 CONECT 5509 5502 CONECT 5510 5503 CONECT 5511 5507 5512 5520 CONECT 5512 5511 5513 5517 CONECT 5513 5512 5514 5518 CONECT 5514 5513 5515 5519 CONECT 5515 5514 5516 5520 CONECT 5516 5515 5521 CONECT 5517 5512 CONECT 5518 5513 CONECT 5519 5514 CONECT 5520 5511 5515 CONECT 5521 5516 CONECT 5522 5523 5524 CONECT 5523 5522 CONECT 5524 5522 5525 CONECT 5525 5524 CONECT 5526 5527 5528 CONECT 5527 5526 CONECT 5528 5526 5529 CONECT 5529 5528 CONECT 5530 5531 5532 CONECT 5531 5530 CONECT 5532 5530 5533 CONECT 5533 5532 CONECT 5534 5535 5536 CONECT 5535 5534 CONECT 5536 5534 5537 CONECT 5537 5536 CONECT 5538 5539 5540 CONECT 5539 5538 CONECT 5540 5538 5541 CONECT 5541 5540 CONECT 5542 5543 5544 CONECT 5543 5542 CONECT 5544 5542 5545 CONECT 5545 5544 CONECT 5546 5547 5548 CONECT 5547 5546 CONECT 5548 5546 5549 CONECT 5549 5548 CONECT 5550 5551 5552 CONECT 5551 5550 CONECT 5552 5550 5553 CONECT 5553 5552 CONECT 5554 5555 5556 CONECT 5555 5554 CONECT 5556 5554 5557 CONECT 5557 5556 CONECT 5558 5559 5560 CONECT 5559 5558 CONECT 5560 5558 5561 CONECT 5561 5560 CONECT 5562 5563 5564 CONECT 5563 5562 CONECT 5564 5562 5565 CONECT 5565 5564 CONECT 5566 5567 5568 CONECT 5567 5566 CONECT 5568 5566 5569 CONECT 5569 5568 CONECT 5570 5571 5572 CONECT 5571 5570 CONECT 5572 5570 5573 CONECT 5573 5572 CONECT 5574 5575 5576 CONECT 5575 5574 CONECT 5576 5574 5577 CONECT 5577 5576 CONECT 5578 5579 5580 CONECT 5579 5578 CONECT 5580 5578 5581 CONECT 5581 5580 CONECT 5582 5583 5584 CONECT 5583 5582 CONECT 5584 5582 5585 CONECT 5585 5584 CONECT 5586 5587 5588 CONECT 5587 5586 CONECT 5588 5586 5589 CONECT 5589 5588 CONECT 5590 5591 5592 CONECT 5591 5590 CONECT 5592 5590 5593 CONECT 5593 5592 CONECT 5594 5595 5596 CONECT 5595 5594 CONECT 5596 5594 5597 CONECT 5597 5596 CONECT 5598 5599 5600 CONECT 5599 5598 CONECT 5600 5598 5601 CONECT 5601 5600 CONECT 5602 5603 5604 CONECT 5603 5602 CONECT 5604 5602 5605 CONECT 5605 5604 CONECT 5606 4456 5607 5617 CONECT 5607 5606 5608 5614 CONECT 5608 5607 5609 5615 CONECT 5609 5608 5610 5616 CONECT 5610 5609 5611 5617 CONECT 5611 5610 5618 CONECT 5612 5613 5614 5619 CONECT 5613 5612 CONECT 5614 5607 5612 CONECT 5615 5608 CONECT 5616 5609 CONECT 5617 5606 5610 CONECT 5618 5611 CONECT 5619 5612 MASTER 324 0 27 9 71 0 0 6 5706 3 184 59 END