HEADER VIRAL PROTEIN 24-OCT-25 9XBQ TITLE SARS-COV2 MAIN PROTEASE(MPRO) COMPLEXED WITH RIP1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE NSP5; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PRO-SER-LEU-GLN; COMPND 10 CHAIN: E, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.FU,X.FU REVDAT 1 28-OCT-26 9XBQ 0 JRNL AUTH X.FU,X.FU JRNL TITL SARS-COV2 MAIN PROTEASE(MPRO) COMPLEXED WITH RIP1 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.16_3549: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 86221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0100 - 6.0459 0.97 2712 143 0.1618 0.1795 REMARK 3 2 6.0459 - 4.8041 0.98 2772 106 0.1747 0.1937 REMARK 3 3 4.8041 - 4.1983 0.97 2719 146 0.1563 0.2029 REMARK 3 4 4.1983 - 3.8151 0.97 2739 147 0.1707 0.2062 REMARK 3 5 3.8151 - 3.5421 0.96 2686 131 0.1930 0.2380 REMARK 3 6 3.5421 - 3.3335 0.98 2739 135 0.2010 0.2224 REMARK 3 7 3.3335 - 3.1667 0.98 2772 154 0.2113 0.2366 REMARK 3 8 3.1667 - 3.0289 0.98 2730 166 0.2195 0.2696 REMARK 3 9 3.0289 - 2.9124 0.98 2748 147 0.2263 0.2417 REMARK 3 10 2.9124 - 2.8120 0.98 2753 169 0.2253 0.2801 REMARK 3 11 2.8120 - 2.7241 0.98 2744 130 0.2338 0.2835 REMARK 3 12 2.7241 - 2.6463 0.98 2778 144 0.2377 0.2827 REMARK 3 13 2.6463 - 2.5766 0.98 2742 138 0.2421 0.2769 REMARK 3 14 2.5766 - 2.5138 0.98 2740 150 0.2377 0.2993 REMARK 3 15 2.5138 - 2.4567 0.98 2743 149 0.2423 0.2718 REMARK 3 16 2.4567 - 2.4044 0.98 2732 145 0.2415 0.2997 REMARK 3 17 2.4044 - 2.3563 0.98 2750 153 0.2483 0.3011 REMARK 3 18 2.3563 - 2.3119 0.97 2720 132 0.2397 0.2494 REMARK 3 19 2.3119 - 2.2706 0.97 2797 160 0.2415 0.2739 REMARK 3 20 2.2706 - 2.2321 0.96 2621 144 0.2829 0.3194 REMARK 3 21 2.2321 - 2.1961 0.97 2745 151 0.2706 0.3046 REMARK 3 22 2.1961 - 2.1623 0.97 2708 138 0.2562 0.2598 REMARK 3 23 2.1623 - 2.1305 0.97 2738 156 0.2635 0.3239 REMARK 3 24 2.1305 - 2.1005 0.97 2716 132 0.2716 0.2795 REMARK 3 25 2.1005 - 2.0722 0.97 2710 142 0.2687 0.2970 REMARK 3 26 2.0722 - 2.0453 0.97 2728 144 0.2769 0.3261 REMARK 3 27 2.0453 - 2.0197 0.97 2672 155 0.2810 0.3428 REMARK 3 28 2.0197 - 1.9954 0.96 2794 110 0.2885 0.3014 REMARK 3 29 1.9954 - 1.9722 0.96 2708 142 0.3085 0.3130 REMARK 3 30 1.9722 - 1.9500 0.96 2662 144 0.3146 0.3678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 9697 REMARK 3 ANGLE : 0.647 13175 REMARK 3 CHIRALITY : 0.044 1491 REMARK 3 PLANARITY : 0.005 1709 REMARK 3 DIHEDRAL : 3.241 5703 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -29.0585 34.3526 13.0357 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.1630 REMARK 3 T33: 0.2209 T12: 0.0162 REMARK 3 T13: -0.0523 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.2505 L22: 0.3747 REMARK 3 L33: 0.7173 L12: 0.0671 REMARK 3 L13: -0.1955 L23: 0.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: -0.0132 S13: -0.0263 REMARK 3 S21: 0.0471 S22: -0.0027 S23: -0.0564 REMARK 3 S31: 0.0190 S32: 0.0080 S33: 0.0699 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 02-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300064983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79900 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, MAGNESIUM FORMATE DIHYDRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN C 221 REMARK 465 ARG C 222 REMARK 465 GLN D 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLU C 178 CG CD OE1 OE2 REMARK 470 GLU D 178 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE D 223 O HOH D 401 2.05 REMARK 500 OG1 THR C 225 O HOH C 401 2.06 REMARK 500 O HOH A 675 O HOH A 782 2.10 REMARK 500 O HOH A 672 O HOH A 705 2.12 REMARK 500 O THR C 226 O HOH C 401 2.15 REMARK 500 O HOH D 505 O HOH D 516 2.18 REMARK 500 O HOH C 476 O HOH C 540 2.18 REMARK 500 OD2 ASP C 92 O HOH C 402 2.19 REMARK 500 O MET B 6 O HOH B 401 2.19 REMARK 500 O HOH A 660 O HOH A 709 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 222 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -127.92 55.01 REMARK 500 ASN A 84 -114.64 51.71 REMARK 500 TYR A 154 -97.57 51.71 REMARK 500 ASP A 187 58.71 -92.50 REMARK 500 ASP B 33 -129.18 53.35 REMARK 500 ASN B 51 87.61 -156.76 REMARK 500 ASN B 84 -121.43 55.99 REMARK 500 TYR B 154 -124.82 74.14 REMARK 500 HIS B 164 -52.25 -124.39 REMARK 500 PRO B 184 37.78 -87.13 REMARK 500 ALA B 191 106.17 -59.86 REMARK 500 TYR B 237 40.07 -105.30 REMARK 500 ASN B 238 55.73 18.22 REMARK 500 ASP C 33 -128.33 55.96 REMARK 500 LEU C 50 -73.11 -57.63 REMARK 500 ASN C 84 -118.42 53.75 REMARK 500 TYR C 154 -116.31 58.73 REMARK 500 SER C 301 57.11 -91.42 REMARK 500 ASP D 33 -129.95 52.08 REMARK 500 ASN D 51 71.73 -157.90 REMARK 500 ASN D 84 -117.13 59.87 REMARK 500 TYR D 154 -107.93 61.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 822 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH C 597 DISTANCE = 5.94 ANGSTROMS DBREF 9XBQ A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 9XBQ B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 9XBQ C 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 9XBQ D 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 9XBQ E 1 4 PDB 9XBQ 9XBQ 1 4 DBREF 9XBQ F 1 4 PDB 9XBQ 9XBQ 1 4 SEQADV 9XBQ ALA A 145 UNP P0DTD1 CYS 3408 CONFLICT SEQADV 9XBQ ALA B 145 UNP P0DTD1 CYS 3408 CONFLICT SEQADV 9XBQ ALA C 145 UNP P0DTD1 CYS 3408 CONFLICT SEQADV 9XBQ ALA D 145 UNP P0DTD1 CYS 3408 CONFLICT SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 C 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 C 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 C 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 C 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 C 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 C 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 C 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 C 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 C 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 C 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 C 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 C 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 C 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 C 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 C 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 C 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 C 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 C 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 C 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 C 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 C 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 C 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 C 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 C 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 D 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 D 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 D 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 D 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 D 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 D 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 D 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 D 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 D 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 D 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 D 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 D 306 SER ALA GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 D 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 D 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 D 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 D 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 D 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 D 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 D 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 D 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 D 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 D 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 D 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 D 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 E 4 PRO SER LEU GLN SEQRES 1 F 4 PRO SER LEU GLN HET PEG A 401 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *896(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 GLU A 47 ASN A 51 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 SER A 301 1 10 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 THR B 45 MET B 49 5 5 HELIX 14 AB5 ASN B 53 ARG B 60 1 8 HELIX 15 AB6 SER B 62 PHE B 66 5 5 HELIX 16 AB7 ILE B 200 ASN B 214 1 15 HELIX 17 AB8 THR B 226 TYR B 237 1 12 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 GLY B 275 1 16 HELIX 21 AC3 THR B 292 GLY B 302 1 11 HELIX 22 AC4 SER C 10 GLY C 15 1 6 HELIX 23 AC5 HIS C 41 CYS C 44 5 4 HELIX 24 AC6 THR C 45 LEU C 50 5 6 HELIX 25 AC7 ASN C 53 LYS C 61 1 9 HELIX 26 AC8 ILE C 200 ASN C 214 1 15 HELIX 27 AC9 THR C 226 TYR C 237 1 12 HELIX 28 AD1 THR C 243 LEU C 250 1 8 HELIX 29 AD2 LEU C 250 GLY C 258 1 9 HELIX 30 AD3 ALA C 260 GLY C 275 1 16 HELIX 31 AD4 THR C 292 CYS C 300 1 9 HELIX 32 AD5 SER D 10 GLY D 15 1 6 HELIX 33 AD6 HIS D 41 CYS D 44 5 4 HELIX 34 AD7 ASN D 53 ARG D 60 1 8 HELIX 35 AD8 SER D 62 HIS D 64 5 3 HELIX 36 AD9 ILE D 200 ASN D 214 1 15 HELIX 37 AE1 THR D 226 TYR D 237 1 12 HELIX 38 AE2 THR D 243 LEU D 250 1 8 HELIX 39 AE3 LEU D 250 GLY D 258 1 9 HELIX 40 AE4 ALA D 260 GLY D 275 1 16 HELIX 41 AE5 THR D 292 SER D 301 1 10 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 3 LYS A 100 PHE A 103 0 SHEET 2 AA2 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA3 5 SER A 121 ALA A 129 0 SHEET 2 AA3 5 THR A 111 TYR A 118 -1 N ALA A 116 O SER A 123 SHEET 3 AA3 5 VAL A 148 ASP A 153 -1 O PHE A 150 N SER A 113 SHEET 4 AA3 5 CYS A 156 GLU A 166 -1 O CYS A 156 N ASP A 153 SHEET 5 AA3 5 THR C 304 PHE C 305 -1 O THR C 304 N GLU A 166 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 LEU B 67 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N GLN B 19 O GLN B 69 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 89 N VAL B 36 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N ILE B 78 O LYS B 90 SHEET 1 AA5 3 LYS B 100 PHE B 103 0 SHEET 2 AA5 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 SHEET 1 AA6 5 SER B 121 ALA B 129 0 SHEET 2 AA6 5 THR B 111 TYR B 118 -1 N VAL B 114 O TYR B 126 SHEET 3 AA6 5 VAL B 148 ASP B 153 -1 O PHE B 150 N SER B 113 SHEET 4 AA6 5 CYS B 156 GLU B 166 -1 O SER B 158 N ASN B 151 SHEET 5 AA6 5 SER E 2 LEU E 3 -1 O SER E 2 N GLU B 166 SHEET 1 AA7 7 VAL C 73 LEU C 75 0 SHEET 2 AA7 7 LEU C 67 ALA C 70 -1 N ALA C 70 O VAL C 73 SHEET 3 AA7 7 MET C 17 CYS C 22 -1 N GLN C 19 O GLN C 69 SHEET 4 AA7 7 THR C 25 LEU C 32 -1 O THR C 25 N CYS C 22 SHEET 5 AA7 7 VAL C 35 PRO C 39 -1 O TYR C 37 N LEU C 30 SHEET 6 AA7 7 VAL C 86 VAL C 91 -1 O LEU C 87 N CYS C 38 SHEET 7 AA7 7 VAL C 77 GLN C 83 -1 N ILE C 78 O LYS C 90 SHEET 1 AA8 5 LYS C 100 PHE C 103 0 SHEET 2 AA8 5 CYS C 156 GLU C 166 1 O VAL C 157 N LYS C 100 SHEET 3 AA8 5 VAL C 148 ASP C 153 -1 N ASN C 151 O SER C 158 SHEET 4 AA8 5 THR C 111 TYR C 118 -1 N SER C 113 O PHE C 150 SHEET 5 AA8 5 SER C 121 ALA C 129 -1 O SER C 123 N ALA C 116 SHEET 1 AA9 3 LYS C 100 PHE C 103 0 SHEET 2 AA9 3 CYS C 156 GLU C 166 1 O VAL C 157 N LYS C 100 SHEET 3 AA9 3 HIS C 172 THR C 175 -1 O ALA C 173 N MET C 165 SHEET 1 AB1 7 VAL D 73 LEU D 75 0 SHEET 2 AB1 7 PHE D 66 ALA D 70 -1 N ALA D 70 O VAL D 73 SHEET 3 AB1 7 MET D 17 CYS D 22 -1 N GLN D 19 O GLN D 69 SHEET 4 AB1 7 THR D 25 LEU D 32 -1 O LEU D 27 N VAL D 20 SHEET 5 AB1 7 VAL D 35 PRO D 39 -1 O TYR D 37 N LEU D 30 SHEET 6 AB1 7 VAL D 86 VAL D 91 -1 O LEU D 87 N CYS D 38 SHEET 7 AB1 7 VAL D 77 GLN D 83 -1 N GLY D 79 O LYS D 90 SHEET 1 AB2 3 LYS D 100 PHE D 103 0 SHEET 2 AB2 3 CYS D 156 GLU D 166 1 O VAL D 157 N LYS D 100 SHEET 3 AB2 3 HIS D 172 THR D 175 -1 O ALA D 173 N MET D 165 SHEET 1 AB3 5 SER D 121 ALA D 129 0 SHEET 2 AB3 5 THR D 111 TYR D 118 -1 N ALA D 116 O SER D 123 SHEET 3 AB3 5 VAL D 148 ASP D 153 -1 O PHE D 150 N SER D 113 SHEET 4 AB3 5 CYS D 156 GLU D 166 -1 O SER D 158 N ASN D 151 SHEET 5 AB3 5 SER F 2 LEU F 3 -1 O SER F 2 N GLU D 166 CRYST1 62.570 66.750 81.210 80.67 88.50 69.91 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015982 -0.005845 0.000542 0.00000 SCALE2 0.000000 0.015952 -0.002637 0.00000 SCALE3 0.000000 0.000000 0.012485 0.00000 CONECT 9487 9488 9489 CONECT 9488 9487 CONECT 9489 9487 9490 CONECT 9490 9489 9491 CONECT 9491 9490 9492 CONECT 9492 9491 9493 CONECT 9493 9492 MASTER 348 0 1 41 60 0 0 610383 6 7 98 END