HEADER PLANT PROTEIN 24-OCT-25 9XBR TITLE CRYSTAL STRUCTURE OF OSSHMT1-WT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHMT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_TAXID: 4530; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA PHAGE ECSZW-2; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 2419741 KEYWDS ENZYME, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.R.LI REVDAT 1 28-OCT-26 9XBR 0 JRNL AUTH Z.R.LI JRNL TITL STRUCTURE OF SHMT AT 3.5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.1_4122: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 26569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.9400 - 5.5200 1.00 1801 145 0.2235 0.2379 REMARK 3 2 5.5200 - 4.8300 1.00 1770 146 0.1994 0.2345 REMARK 3 3 4.8200 - 4.3900 1.00 1782 144 0.1878 0.2193 REMARK 3 4 4.3800 - 4.0700 1.00 1762 147 0.1847 0.2513 REMARK 3 5 4.0700 - 3.8300 1.00 1780 143 0.1977 0.2868 REMARK 3 6 3.8300 - 3.6400 0.99 1757 142 0.2020 0.2968 REMARK 3 7 3.6400 - 3.4800 0.99 1767 144 0.2035 0.2578 REMARK 3 8 3.4800 - 3.3500 0.99 1720 141 0.2377 0.2850 REMARK 3 9 3.3500 - 3.2300 0.99 1748 142 0.2366 0.2969 REMARK 3 10 3.2300 - 3.1300 0.98 1753 141 0.2419 0.2945 REMARK 3 11 3.1300 - 3.0400 0.97 1710 131 0.2540 0.3068 REMARK 3 12 3.0400 - 2.9600 0.98 1725 142 0.2552 0.3185 REMARK 3 13 2.9600 - 2.8900 0.94 1660 135 0.2897 0.3491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7478 REMARK 3 ANGLE : 0.612 10126 REMARK 3 CHIRALITY : 0.043 1118 REMARK 3 PLANARITY : 0.005 1320 REMARK 3 DIHEDRAL : 4.607 1028 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7750 49.0933 -12.9854 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.1896 REMARK 3 T33: 0.2207 T12: 0.0054 REMARK 3 T13: -0.0136 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.0896 L22: 1.4573 REMARK 3 L33: 1.1063 L12: 0.9016 REMARK 3 L13: -0.5607 L23: -0.8702 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: -0.1425 S13: -0.0968 REMARK 3 S21: 0.0321 S22: -0.0862 S23: -0.0283 REMARK 3 S31: -0.0019 S32: 0.0223 S33: 0.0219 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3186 47.3215 -23.3403 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.1936 REMARK 3 T33: 0.2291 T12: -0.0120 REMARK 3 T13: 0.0355 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.4007 L22: 0.7456 REMARK 3 L33: 1.6768 L12: 0.0769 REMARK 3 L13: 0.3980 L23: -0.2331 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.2013 S13: 0.1404 REMARK 3 S21: -0.0934 S22: 0.0199 S23: 0.0326 REMARK 3 S31: 0.1221 S32: -0.1095 S33: -0.0345 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7890 38.1572 -2.5667 REMARK 3 T TENSOR REMARK 3 T11: 0.2740 T22: 0.2150 REMARK 3 T33: 0.2970 T12: -0.0817 REMARK 3 T13: 0.0158 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.1692 L22: 2.1221 REMARK 3 L33: 2.3190 L12: 0.6884 REMARK 3 L13: 0.3310 L23: 0.2563 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: 0.1685 S13: 0.0458 REMARK 3 S21: -0.3903 S22: 0.1028 S23: 0.1781 REMARK 3 S31: 0.1983 S32: -0.1663 S33: 0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5315 62.0334 14.2392 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.2537 REMARK 3 T33: 0.2033 T12: -0.0219 REMARK 3 T13: 0.0154 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 1.4870 L22: 3.2636 REMARK 3 L33: 2.5567 L12: 1.8822 REMARK 3 L13: 0.6012 L23: 0.1668 REMARK 3 S TENSOR REMARK 3 S11: 0.0697 S12: -0.0495 S13: -0.1722 REMARK 3 S21: 0.0042 S22: -0.1266 S23: -0.1577 REMARK 3 S31: -0.3423 S32: 0.2832 S33: 0.0482 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8576 53.6559 11.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.2127 REMARK 3 T33: 0.2876 T12: -0.0324 REMARK 3 T13: 0.0031 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.3710 L22: 1.0781 REMARK 3 L33: 3.2015 L12: 0.1515 REMARK 3 L13: 0.7475 L23: 0.0645 REMARK 3 S TENSOR REMARK 3 S11: 0.1379 S12: 0.0593 S13: 0.2537 REMARK 3 S21: 0.0637 S22: -0.0260 S23: 0.0916 REMARK 3 S31: -0.0567 S32: -0.0826 S33: -0.1793 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 370 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2035 33.3546 22.4260 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.3639 REMARK 3 T33: 0.3503 T12: -0.0245 REMARK 3 T13: 0.0127 T23: 0.1186 REMARK 3 L TENSOR REMARK 3 L11: 2.9493 L22: 2.1555 REMARK 3 L33: 1.2592 L12: -0.0713 REMARK 3 L13: 0.0737 L23: 1.6011 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: -0.0257 S13: -0.0233 REMARK 3 S21: -0.1520 S22: 0.2180 S23: -0.4985 REMARK 3 S31: -0.0224 S32: 0.3587 S33: -0.2146 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 29-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1300065080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 32.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE: 650.00MM BISTRIS REMARK 280 -PROPANE PH7.0 (PH: 7): 100.00MM, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 LEU A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 ARG A 16 REMARK 465 ARG A 17 REMARK 465 GLN A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 SER A 21 REMARK 465 ARG A 22 REMARK 465 ILE A 23 REMARK 465 THR A 24 REMARK 465 PRO A 25 REMARK 465 LEU A 26 REMARK 465 TYR A 27 REMARK 465 TYR A 28 REMARK 465 MET A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 LEU A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 GLU A 36 REMARK 465 GLU A 37 REMARK 465 ARG A 38 REMARK 465 SER A 39 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 MET B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 LEU B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 ASP B 13 REMARK 465 ALA B 14 REMARK 465 LEU B 15 REMARK 465 ARG B 16 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 PRO B 19 REMARK 465 LEU B 20 REMARK 465 SER B 21 REMARK 465 ARG B 22 REMARK 465 ILE B 23 REMARK 465 THR B 24 REMARK 465 PRO B 25 REMARK 465 LEU B 26 REMARK 465 TYR B 27 REMARK 465 TYR B 28 REMARK 465 MET B 29 REMARK 465 ALA B 30 REMARK 465 SER B 31 REMARK 465 LEU B 32 REMARK 465 PRO B 33 REMARK 465 ALA B 34 REMARK 465 THR B 35 REMARK 465 GLU B 36 REMARK 465 GLU B 37 REMARK 465 ARG B 38 REMARK 465 SER B 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 420 CG SD CE REMARK 470 LYS A 469 CG CD CE NZ REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 MET B 420 CG SD CE REMARK 470 LYS B 487 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 388 OD1 ASP B 416 2.10 REMARK 500 O VAL A 54 NZ LYS B 341 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 42 -19.44 78.37 REMARK 500 ASN A 111 39.45 -95.60 REMARK 500 ALA A 229 49.62 -96.91 REMARK 500 PRO A 322 38.07 -99.47 REMARK 500 ASN A 380 -159.63 -148.09 REMARK 500 HIS A 405 30.52 73.55 REMARK 500 SER A 418 -8.46 72.21 REMARK 500 ASN B 111 46.09 -93.49 REMARK 500 ASP B 181 117.09 -166.89 REMARK 500 GLN B 304 -0.20 68.97 REMARK 500 PRO B 322 36.54 -98.20 REMARK 500 ASN B 380 -159.95 -148.15 REMARK 500 HIS B 405 30.53 74.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 9XBR A 1 513 PDB 9XBR 9XBR 1 513 DBREF 9XBR B 1 513 PDB 9XBR 9XBR 1 513 SEQRES 1 A 513 MET ALA MET ALA THR ALA LEU ARG LYS LEU SER SER ASP SEQRES 2 A 513 ALA LEU ARG ARG GLN PRO LEU SER ARG ILE THR PRO LEU SEQRES 3 A 513 TYR TYR MET ALA SER LEU PRO ALA THR GLU GLU ARG SER SEQRES 4 A 513 GLY VAL THR TRP PRO LYS GLN LEU ASN ALA PRO LEU GLU SEQRES 5 A 513 GLU VAL ASP PRO GLU ILE ALA ASP ILE ILE GLU HIS GLU SEQRES 6 A 513 LYS ALA ARG GLN TRP LYS GLY LEU GLU LEU ILE PRO SER SEQRES 7 A 513 GLU ASN PHE THR SER VAL SER VAL MET GLN ALA VAL GLY SEQRES 8 A 513 SER VAL MET THR ASN LYS TYR SER GLU GLY TYR PRO GLY SEQRES 9 A 513 ALA ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP MET ALA SEQRES 10 A 513 GLU SER LEU CYS GLN LYS ARG ALA LEU GLU ALA PHE ARG SEQRES 11 A 513 LEU ASP PRO ALA LYS TRP GLY VAL ASN VAL GLN PRO LEU SEQRES 12 A 513 SER GLY SER PRO ALA ASN PHE HIS VAL TYR THR ALA LEU SEQRES 13 A 513 LEU LYS PRO HIS GLU ARG ILE MET ALA LEU ASP LEU PRO SEQRES 14 A 513 HIS GLY GLY HIS LEU SER HIS GLY TYR GLN THR ASP THR SEQRES 15 A 513 LYS LYS ILE SER ALA VAL SER ILE PHE PHE GLU THR MET SEQRES 16 A 513 PRO TYR ARG LEU ASP GLU SER THR GLY LEU ILE ASP TYR SEQRES 17 A 513 ASP GLN MET GLU LYS SER ALA VAL LEU PHE ARG PRO LYS SEQRES 18 A 513 LEU ILE VAL ALA GLY ALA SER ALA TYR ALA ARG LEU TYR SEQRES 19 A 513 ASP TYR ASP ARG MET ARG LYS VAL CYS ASP LYS GLN LYS SEQRES 20 A 513 ALA ILE LEU LEU ALA ASP MET ALA HIS ILE SER GLY LEU SEQRES 21 A 513 VAL ALA ALA GLY VAL VAL PRO SER PRO PHE ASP TYR ALA SEQRES 22 A 513 ASP VAL VAL THR THR THR THR HIS LYS SER LEU ARG GLY SEQRES 23 A 513 PRO ARG GLY ALA MET ILE PHE TYR ARG LYS GLY VAL LYS SEQRES 24 A 513 GLY VAL ASN LYS GLN GLY LYS GLU VAL MET TYR ASP PHE SEQRES 25 A 513 GLU ASP LYS ILE ASN ALA ALA VAL PHE PRO GLY LEU GLN SEQRES 26 A 513 GLY GLY PRO HIS ASN HIS THR ILE THR GLY LEU ALA VAL SEQRES 27 A 513 ALA LEU LYS GLN ALA THR THR PRO GLU TYR ARG ALA TYR SEQRES 28 A 513 GLN GLU GLN VAL MET SER ASN CYS ALA LYS PHE ALA GLN SEQRES 29 A 513 SER LEU THR ALA LYS GLY TYR GLU LEU VAL SER GLY GLY SEQRES 30 A 513 THR ASP ASN HIS LEU VAL LEU VAL ASN LEU LYS SER LYS SEQRES 31 A 513 GLY ILE ASP GLY SER ARG VAL GLU LYS VAL LEU GLU ASN SEQRES 32 A 513 VAL HIS ILE ALA ALA ASN LYS ASN THR VAL PRO GLY ASP SEQRES 33 A 513 VAL SER ALA MET VAL PRO GLY GLY ILE ARG MET GLY THR SEQRES 34 A 513 PRO ALA LEU THR SER ARG GLY PHE VAL GLU GLU ASP PHE SEQRES 35 A 513 ALA LYS VAL ALA ASP PHE PHE ASP ALA ALA VAL ASN LEU SEQRES 36 A 513 ALA LEU LYS VAL LYS ALA ALA ALA GLY GLY THR LYS LEU SEQRES 37 A 513 LYS ASP PHE VAL ALA THR LEU GLN SER ASP SER ASN ILE SEQRES 38 A 513 GLN SER GLU ILE ALA LYS LEU ARG HIS ASP VAL GLU GLU SEQRES 39 A 513 TYR ALA LYS GLN PHE PRO THR ILE GLY PHE GLU LYS GLU SEQRES 40 A 513 THR MET LYS TYR LYS ASN SEQRES 1 B 513 MET ALA MET ALA THR ALA LEU ARG LYS LEU SER SER ASP SEQRES 2 B 513 ALA LEU ARG ARG GLN PRO LEU SER ARG ILE THR PRO LEU SEQRES 3 B 513 TYR TYR MET ALA SER LEU PRO ALA THR GLU GLU ARG SER SEQRES 4 B 513 GLY VAL THR TRP PRO LYS GLN LEU ASN ALA PRO LEU GLU SEQRES 5 B 513 GLU VAL ASP PRO GLU ILE ALA ASP ILE ILE GLU HIS GLU SEQRES 6 B 513 LYS ALA ARG GLN TRP LYS GLY LEU GLU LEU ILE PRO SER SEQRES 7 B 513 GLU ASN PHE THR SER VAL SER VAL MET GLN ALA VAL GLY SEQRES 8 B 513 SER VAL MET THR ASN LYS TYR SER GLU GLY TYR PRO GLY SEQRES 9 B 513 ALA ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP MET ALA SEQRES 10 B 513 GLU SER LEU CYS GLN LYS ARG ALA LEU GLU ALA PHE ARG SEQRES 11 B 513 LEU ASP PRO ALA LYS TRP GLY VAL ASN VAL GLN PRO LEU SEQRES 12 B 513 SER GLY SER PRO ALA ASN PHE HIS VAL TYR THR ALA LEU SEQRES 13 B 513 LEU LYS PRO HIS GLU ARG ILE MET ALA LEU ASP LEU PRO SEQRES 14 B 513 HIS GLY GLY HIS LEU SER HIS GLY TYR GLN THR ASP THR SEQRES 15 B 513 LYS LYS ILE SER ALA VAL SER ILE PHE PHE GLU THR MET SEQRES 16 B 513 PRO TYR ARG LEU ASP GLU SER THR GLY LEU ILE ASP TYR SEQRES 17 B 513 ASP GLN MET GLU LYS SER ALA VAL LEU PHE ARG PRO LYS SEQRES 18 B 513 LEU ILE VAL ALA GLY ALA SER ALA TYR ALA ARG LEU TYR SEQRES 19 B 513 ASP TYR ASP ARG MET ARG LYS VAL CYS ASP LYS GLN LYS SEQRES 20 B 513 ALA ILE LEU LEU ALA ASP MET ALA HIS ILE SER GLY LEU SEQRES 21 B 513 VAL ALA ALA GLY VAL VAL PRO SER PRO PHE ASP TYR ALA SEQRES 22 B 513 ASP VAL VAL THR THR THR THR HIS LYS SER LEU ARG GLY SEQRES 23 B 513 PRO ARG GLY ALA MET ILE PHE TYR ARG LYS GLY VAL LYS SEQRES 24 B 513 GLY VAL ASN LYS GLN GLY LYS GLU VAL MET TYR ASP PHE SEQRES 25 B 513 GLU ASP LYS ILE ASN ALA ALA VAL PHE PRO GLY LEU GLN SEQRES 26 B 513 GLY GLY PRO HIS ASN HIS THR ILE THR GLY LEU ALA VAL SEQRES 27 B 513 ALA LEU LYS GLN ALA THR THR PRO GLU TYR ARG ALA TYR SEQRES 28 B 513 GLN GLU GLN VAL MET SER ASN CYS ALA LYS PHE ALA GLN SEQRES 29 B 513 SER LEU THR ALA LYS GLY TYR GLU LEU VAL SER GLY GLY SEQRES 30 B 513 THR ASP ASN HIS LEU VAL LEU VAL ASN LEU LYS SER LYS SEQRES 31 B 513 GLY ILE ASP GLY SER ARG VAL GLU LYS VAL LEU GLU ASN SEQRES 32 B 513 VAL HIS ILE ALA ALA ASN LYS ASN THR VAL PRO GLY ASP SEQRES 33 B 513 VAL SER ALA MET VAL PRO GLY GLY ILE ARG MET GLY THR SEQRES 34 B 513 PRO ALA LEU THR SER ARG GLY PHE VAL GLU GLU ASP PHE SEQRES 35 B 513 ALA LYS VAL ALA ASP PHE PHE ASP ALA ALA VAL ASN LEU SEQRES 36 B 513 ALA LEU LYS VAL LYS ALA ALA ALA GLY GLY THR LYS LEU SEQRES 37 B 513 LYS ASP PHE VAL ALA THR LEU GLN SER ASP SER ASN ILE SEQRES 38 B 513 GLN SER GLU ILE ALA LYS LEU ARG HIS ASP VAL GLU GLU SEQRES 39 B 513 TYR ALA LYS GLN PHE PRO THR ILE GLY PHE GLU LYS GLU SEQRES 40 B 513 THR MET LYS TYR LYS ASN HELIX 1 AA1 LYS A 45 ALA A 49 5 5 HELIX 2 AA2 PRO A 50 ASP A 55 1 6 HELIX 3 AA3 ASP A 55 GLY A 72 1 18 HELIX 4 AA4 SER A 83 GLY A 91 1 9 HELIX 5 AA5 SER A 92 LYS A 97 5 6 HELIX 6 AA6 ASN A 111 PHE A 129 1 19 HELIX 7 AA7 SER A 144 LEU A 157 1 14 HELIX 8 AA8 LEU A 168 GLY A 171 5 4 HELIX 9 AA9 HIS A 173 GLY A 177 5 5 HELIX 10 AB1 ALA A 187 PHE A 192 1 6 HELIX 11 AB2 ASP A 207 ARG A 219 1 13 HELIX 12 AB3 ASP A 235 LYS A 247 1 13 HELIX 13 AB4 ILE A 257 GLY A 264 1 8 HELIX 14 AB5 SER A 268 TYR A 272 5 5 HELIX 15 AB6 PHE A 312 PHE A 321 1 10 HELIX 16 AB7 HIS A 329 ALA A 343 1 15 HELIX 17 AB8 THR A 345 LYS A 369 1 25 HELIX 18 AB9 SER A 375 GLY A 377 5 3 HELIX 19 AC1 LYS A 388 GLY A 391 5 4 HELIX 20 AC2 ASP A 393 HIS A 405 1 13 HELIX 21 AC3 THR A 429 GLY A 436 1 8 HELIX 22 AC4 VAL A 438 ALA A 463 1 26 HELIX 23 AC5 LYS A 467 ASP A 478 1 12 HELIX 24 AC6 ASP A 478 LYS A 497 1 20 HELIX 25 AC7 THR B 42 LEU B 47 1 6 HELIX 26 AC8 PRO B 50 ASP B 55 1 6 HELIX 27 AC9 ASP B 55 GLY B 72 1 18 HELIX 28 AD1 SER B 83 GLY B 91 1 9 HELIX 29 AD2 SER B 92 LYS B 97 5 6 HELIX 30 AD3 ASN B 111 PHE B 129 1 19 HELIX 31 AD4 SER B 144 LEU B 157 1 14 HELIX 32 AD5 LEU B 168 GLY B 171 5 4 HELIX 33 AD6 HIS B 173 GLY B 177 5 5 HELIX 34 AD7 ALA B 187 PHE B 192 1 6 HELIX 35 AD8 ASP B 207 ARG B 219 1 13 HELIX 36 AD9 ASP B 235 LYS B 247 1 13 HELIX 37 AE1 ILE B 257 GLY B 264 1 8 HELIX 38 AE2 SER B 268 TYR B 272 5 5 HELIX 39 AE3 LYS B 303 GLY B 305 5 3 HELIX 40 AE4 PHE B 312 PHE B 321 1 10 HELIX 41 AE5 HIS B 329 ALA B 343 1 15 HELIX 42 AE6 THR B 345 LYS B 369 1 25 HELIX 43 AE7 SER B 375 GLY B 377 5 3 HELIX 44 AE8 LYS B 388 GLY B 391 5 4 HELIX 45 AE9 ASP B 393 HIS B 405 1 13 HELIX 46 AF1 THR B 429 GLY B 436 1 8 HELIX 47 AF2 VAL B 438 ALA B 463 1 26 HELIX 48 AF3 LYS B 467 ASP B 478 1 12 HELIX 49 AF4 ASP B 478 LYS B 497 1 20 HELIX 50 AF5 GLU B 505 MET B 509 5 5 SHEET 1 AA1 2 LEU A 73 GLU A 74 0 SHEET 2 AA1 2 ILE A 406 ALA A 407 1 O ALA A 407 N LEU A 73 SHEET 1 AA2 2 GLY A 101 TYR A 102 0 SHEET 2 AA2 2 ALA A 105 ARG A 106 -1 O ALA A 105 N TYR A 102 SHEET 1 AA3 7 TRP A 136 ASN A 139 0 SHEET 2 AA3 7 ALA A 290 ARG A 295 -1 O ILE A 292 N ASN A 139 SHEET 3 AA3 7 VAL A 275 THR A 279 -1 N VAL A 276 O PHE A 293 SHEET 4 AA3 7 ILE A 249 ASP A 253 1 N LEU A 250 O VAL A 275 SHEET 5 AA3 7 LEU A 222 GLY A 226 1 N ILE A 223 O ILE A 249 SHEET 6 AA3 7 ARG A 162 LEU A 166 1 N MET A 164 O VAL A 224 SHEET 7 AA3 7 GLU A 193 TYR A 197 1 O GLU A 193 N ILE A 163 SHEET 1 AA4 2 VAL A 298 VAL A 301 0 SHEET 2 AA4 2 GLU A 307 MET A 309 -1 O VAL A 308 N GLY A 300 SHEET 1 AA5 4 GLU A 372 LEU A 373 0 SHEET 2 AA5 4 LEU A 382 ASN A 386 -1 O ASN A 386 N GLU A 372 SHEET 3 AA5 4 GLY A 424 GLY A 428 -1 O ILE A 425 N VAL A 385 SHEET 4 AA5 4 ASN A 409 ASN A 411 -1 N ASN A 409 O ARG A 426 SHEET 1 AA6 2 LEU B 73 GLU B 74 0 SHEET 2 AA6 2 ILE B 406 ALA B 407 1 O ALA B 407 N LEU B 73 SHEET 1 AA7 2 GLY B 101 TYR B 102 0 SHEET 2 AA7 2 ALA B 105 ARG B 106 -1 O ALA B 105 N TYR B 102 SHEET 1 AA8 7 TRP B 136 ASN B 139 0 SHEET 2 AA8 7 ALA B 290 ARG B 295 -1 O TYR B 294 N GLY B 137 SHEET 3 AA8 7 VAL B 275 THR B 279 -1 N VAL B 276 O PHE B 293 SHEET 4 AA8 7 ILE B 249 ASP B 253 1 N LEU B 250 O VAL B 275 SHEET 5 AA8 7 LEU B 222 GLY B 226 1 N ILE B 223 O ILE B 249 SHEET 6 AA8 7 ARG B 162 LEU B 166 1 N MET B 164 O VAL B 224 SHEET 7 AA8 7 GLU B 193 TYR B 197 1 O MET B 195 N ILE B 163 SHEET 1 AA9 2 VAL B 298 VAL B 301 0 SHEET 2 AA9 2 GLU B 307 MET B 309 -1 O VAL B 308 N LYS B 299 SHEET 1 AB1 4 GLU B 372 LEU B 373 0 SHEET 2 AB1 4 LEU B 382 ASN B 386 -1 O ASN B 386 N GLU B 372 SHEET 3 AB1 4 GLY B 424 GLY B 428 -1 O MET B 427 N VAL B 383 SHEET 4 AB1 4 ASN B 409 ASN B 411 -1 N ASN B 409 O ARG B 426 CISPEP 1 PHE A 321 PRO A 322 0 11.63 CISPEP 2 PHE B 321 PRO B 322 0 12.54 CRYST1 167.371 167.371 74.543 90.00 90.00 120.00 P 6 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005975 0.003450 0.000000 0.00000 SCALE2 0.000000 0.006899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013415 0.00000 MASTER 440 0 0 50 34 0 0 6 7308 2 0 80 END