data_9XHA # _entry.id 9XHA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9XHA pdb_00009xha 10.2210/pdb9xha/pdb WWPDB D_1300065382 ? ? EMDB EMD-66871 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-11-04 ? 2 'EM metadata' 1 0 2026-11-04 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9XHA _pdbx_database_status.recvd_initial_deposition_date 2025-10-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of unnatural-base aptamer AptD1 with DENV1 NS1 hexamer' _pdbx_database_related.db_id EMD-66871 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email nureki@bs.s.u-tokyo.ac.jp _pdbx_contact_author.name_first Osamu _pdbx_contact_author.name_last Nureki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1813-7008 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawada, K.' 1 0000-0002-7582-2354 'Sano, F.K.' 2 0000-0002-8965-788X 'Shuto, Y.' 3 0009-0007-8710-4134 'Hirano, H.' 4 0009-0006-3176-6174 'Kusakizako, T.' 5 0000-0002-6186-6647 'Itoh, Y.' 6 0000-0001-7802-5572 'Kise, Y.' 7 0000-0002-1840-5028 'Nureki, O.' 8 0000-0003-1813-7008 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Structural Insights into Enhanced Binding Affinity and Specificity of Six-Letter DNA Aptamers to Dengue Antigen NS1 Proteins via Genetic Alphabet Expansion ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sawada, K.' 1 0000-0002-7582-2354 primary 'Kimoto, M.' 2 0000-0002-6261-7562 primary 'Matsunaga, K.' 3 0000-0003-3065-0365 primary 'Tan, H.P.' 4 0009-0001-7342-3405 primary 'Takayanagi, R.' 5 0009-0004-3435-8438 primary 'Sano, F.K.' 6 0000-0002-8965-788X primary 'Shuto, Y.' 7 0009-0007-8710-4134 primary 'Hirano, H.' 8 0009-0006-3176-6174 primary 'Kusakizako, T.' 9 0000-0002-6186-6647 primary 'Itoh, Y.' 10 0000-0001-7802-5572 primary 'Kise, Y.' 11 0000-0002-1840-5028 primary 'Hirao, I.' 12 0000-0002-1115-8079 primary 'Nureki, O.' 13 0000-0003-1813-7008 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-structural protein 1' 42042.566 2 ? ? ? ? 2 polymer syn 'unnatural-base aptamer AptD2' 22741.676 1 ? ? ? ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NS1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ASDSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHI LSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDY GFGVFTTNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKNCHWPKSHTLWSNGVLE SEMIIPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDFDFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTL PPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTAENLYFQGAAAHHHHHH ; ;ASDSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHI LSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDY GFGVFTTNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKNCHWPKSHTLWSNGVLE SEMIIPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDFDFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTL PPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTAENLYFQGAAAHHHHHH ; A,B ? 2 polydeoxyribonucleotide no yes ;(DG)(DG)(DC)(DT)(DG)(DG)(DT)(DC)(DC)(DG)(91N)(DC)(DT)(DG)(DG)(DG)(DA)(DA)(DC) (DA)(DA)(DG)(91N)(DG)(DG)(DC)(DG)(DG)(DG)(DA)(DG)(DG)(DG)(DA)(A1MCL)(DG)(DG)(DG) (DT)(DG)(DT)(DG)(DG)(DG)(DT)(DG)(DC)(DG)(DA)(DC)(DA)(DA)(DG)(DC)(DG)(DG)(DA)(DC) (DC)(DA)(DG)(DC)(DC)(DC)(DG)(DC)(DG)(DA)(DA)(DG)(DC)(DG) ; GGCTGGTCCGXCTGGGAACAAGXGGCGGGAGGGAXGGGTGTGGGTGCGACAAGCGGACCAGCCCGCGAAGCG C ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 ASP n 1 4 SER n 1 5 GLY n 1 6 CYS n 1 7 VAL n 1 8 VAL n 1 9 SER n 1 10 TRP n 1 11 LYS n 1 12 ASN n 1 13 LYS n 1 14 GLU n 1 15 LEU n 1 16 LYS n 1 17 CYS n 1 18 GLY n 1 19 SER n 1 20 GLY n 1 21 ILE n 1 22 PHE n 1 23 ILE n 1 24 THR n 1 25 ASP n 1 26 ASN n 1 27 VAL n 1 28 HIS n 1 29 THR n 1 30 TRP n 1 31 THR n 1 32 GLU n 1 33 GLN n 1 34 TYR n 1 35 LYS n 1 36 PHE n 1 37 GLN n 1 38 PRO n 1 39 GLU n 1 40 SER n 1 41 PRO n 1 42 SER n 1 43 LYS n 1 44 LEU n 1 45 ALA n 1 46 SER n 1 47 ALA n 1 48 ILE n 1 49 GLN n 1 50 LYS n 1 51 ALA n 1 52 HIS n 1 53 GLU n 1 54 GLU n 1 55 GLY n 1 56 ILE n 1 57 CYS n 1 58 GLY n 1 59 ILE n 1 60 ARG n 1 61 SER n 1 62 VAL n 1 63 THR n 1 64 ARG n 1 65 LEU n 1 66 GLU n 1 67 ASN n 1 68 LEU n 1 69 MET n 1 70 TRP n 1 71 LYS n 1 72 GLN n 1 73 ILE n 1 74 THR n 1 75 PRO n 1 76 GLU n 1 77 LEU n 1 78 ASN n 1 79 HIS n 1 80 ILE n 1 81 LEU n 1 82 SER n 1 83 GLU n 1 84 ASN n 1 85 GLU n 1 86 VAL n 1 87 LYS n 1 88 LEU n 1 89 THR n 1 90 ILE n 1 91 MET n 1 92 THR n 1 93 GLY n 1 94 ASP n 1 95 ILE n 1 96 LYS n 1 97 GLY n 1 98 ILE n 1 99 MET n 1 100 GLN n 1 101 ALA n 1 102 GLY n 1 103 LYS n 1 104 ARG n 1 105 SER n 1 106 LEU n 1 107 ARG n 1 108 PRO n 1 109 GLN n 1 110 PRO n 1 111 THR n 1 112 GLU n 1 113 LEU n 1 114 LYS n 1 115 TYR n 1 116 SER n 1 117 TRP n 1 118 LYS n 1 119 THR n 1 120 TRP n 1 121 GLY n 1 122 LYS n 1 123 ALA n 1 124 LYS n 1 125 MET n 1 126 LEU n 1 127 SER n 1 128 THR n 1 129 GLU n 1 130 SER n 1 131 HIS n 1 132 ASN n 1 133 GLN n 1 134 THR n 1 135 PHE n 1 136 LEU n 1 137 ILE n 1 138 ASP n 1 139 GLY n 1 140 PRO n 1 141 GLU n 1 142 THR n 1 143 ALA n 1 144 GLU n 1 145 CYS n 1 146 PRO n 1 147 ASN n 1 148 THR n 1 149 ASN n 1 150 ARG n 1 151 ALA n 1 152 TRP n 1 153 ASN n 1 154 SER n 1 155 LEU n 1 156 GLU n 1 157 VAL n 1 158 GLU n 1 159 ASP n 1 160 TYR n 1 161 GLY n 1 162 PHE n 1 163 GLY n 1 164 VAL n 1 165 PHE n 1 166 THR n 1 167 THR n 1 168 ASN n 1 169 ILE n 1 170 TRP n 1 171 LEU n 1 172 LYS n 1 173 LEU n 1 174 LYS n 1 175 GLU n 1 176 LYS n 1 177 GLN n 1 178 ASP n 1 179 VAL n 1 180 PHE n 1 181 CYS n 1 182 ASP n 1 183 SER n 1 184 LYS n 1 185 LEU n 1 186 MET n 1 187 SER n 1 188 ALA n 1 189 ALA n 1 190 ILE n 1 191 LYS n 1 192 ASP n 1 193 ASN n 1 194 ARG n 1 195 ALA n 1 196 VAL n 1 197 HIS n 1 198 ALA n 1 199 ASP n 1 200 MET n 1 201 GLY n 1 202 TYR n 1 203 TRP n 1 204 ILE n 1 205 GLU n 1 206 SER n 1 207 ALA n 1 208 LEU n 1 209 ASN n 1 210 ASP n 1 211 THR n 1 212 TRP n 1 213 LYS n 1 214 ILE n 1 215 GLU n 1 216 LYS n 1 217 ALA n 1 218 SER n 1 219 PHE n 1 220 ILE n 1 221 GLU n 1 222 VAL n 1 223 LYS n 1 224 ASN n 1 225 CYS n 1 226 HIS n 1 227 TRP n 1 228 PRO n 1 229 LYS n 1 230 SER n 1 231 HIS n 1 232 THR n 1 233 LEU n 1 234 TRP n 1 235 SER n 1 236 ASN n 1 237 GLY n 1 238 VAL n 1 239 LEU n 1 240 GLU n 1 241 SER n 1 242 GLU n 1 243 MET n 1 244 ILE n 1 245 ILE n 1 246 PRO n 1 247 LYS n 1 248 ASN n 1 249 LEU n 1 250 ALA n 1 251 GLY n 1 252 PRO n 1 253 VAL n 1 254 SER n 1 255 GLN n 1 256 HIS n 1 257 ASN n 1 258 TYR n 1 259 ARG n 1 260 PRO n 1 261 GLY n 1 262 TYR n 1 263 HIS n 1 264 THR n 1 265 GLN n 1 266 ILE n 1 267 THR n 1 268 GLY n 1 269 PRO n 1 270 TRP n 1 271 HIS n 1 272 LEU n 1 273 GLY n 1 274 LYS n 1 275 LEU n 1 276 GLU n 1 277 MET n 1 278 ASP n 1 279 PHE n 1 280 ASP n 1 281 PHE n 1 282 CYS n 1 283 ASP n 1 284 GLY n 1 285 THR n 1 286 THR n 1 287 VAL n 1 288 VAL n 1 289 VAL n 1 290 THR n 1 291 GLU n 1 292 ASP n 1 293 CYS n 1 294 GLY n 1 295 ASN n 1 296 ARG n 1 297 GLY n 1 298 PRO n 1 299 SER n 1 300 LEU n 1 301 ARG n 1 302 THR n 1 303 THR n 1 304 THR n 1 305 ALA n 1 306 SER n 1 307 GLY n 1 308 LYS n 1 309 LEU n 1 310 ILE n 1 311 THR n 1 312 GLU n 1 313 TRP n 1 314 CYS n 1 315 CYS n 1 316 ARG n 1 317 SER n 1 318 CYS n 1 319 THR n 1 320 LEU n 1 321 PRO n 1 322 PRO n 1 323 LEU n 1 324 ARG n 1 325 TYR n 1 326 ARG n 1 327 GLY n 1 328 GLU n 1 329 ASP n 1 330 GLY n 1 331 CYS n 1 332 TRP n 1 333 TYR n 1 334 GLY n 1 335 MET n 1 336 GLU n 1 337 ILE n 1 338 ARG n 1 339 PRO n 1 340 LEU n 1 341 LYS n 1 342 GLU n 1 343 LYS n 1 344 GLU n 1 345 GLU n 1 346 ASN n 1 347 LEU n 1 348 VAL n 1 349 ASN n 1 350 SER n 1 351 LEU n 1 352 VAL n 1 353 THR n 1 354 ALA n 1 355 GLU n 1 356 ASN n 1 357 LEU n 1 358 TYR n 1 359 PHE n 1 360 GLN n 1 361 GLY n 1 362 ALA n 1 363 ALA n 1 364 ALA n 1 365 HIS n 1 366 HIS n 1 367 HIS n 1 368 HIS n 1 369 HIS n 1 370 HIS n 2 1 DG n 2 2 DG n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 DG n 2 7 DT n 2 8 DC n 2 9 DC n 2 10 DG n 2 11 91N n 2 12 DC n 2 13 DT n 2 14 DG n 2 15 DG n 2 16 DG n 2 17 DA n 2 18 DA n 2 19 DC n 2 20 DA n 2 21 DA n 2 22 DG n 2 23 91N n 2 24 DG n 2 25 DG n 2 26 DC n 2 27 DG n 2 28 DG n 2 29 DG n 2 30 DA n 2 31 DG n 2 32 DG n 2 33 DG n 2 34 DA n 2 35 A1MCL n 2 36 DG n 2 37 DG n 2 38 DG n 2 39 DT n 2 40 DG n 2 41 DT n 2 42 DG n 2 43 DG n 2 44 DG n 2 45 DT n 2 46 DG n 2 47 DC n 2 48 DG n 2 49 DA n 2 50 DC n 2 51 DA n 2 52 DA n 2 53 DG n 2 54 DC n 2 55 DG n 2 56 DG n 2 57 DA n 2 58 DC n 2 59 DC n 2 60 DA n 2 61 DG n 2 62 DC n 2 63 DC n 2 64 DC n 2 65 DG n 2 66 DC n 2 67 DG n 2 68 DA n 2 69 DA n 2 70 DG n 2 71 DC n 2 72 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 370 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Dengue virus 2 Thailand/16681/84' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 31634 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 72 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 91N non-polymer . '[(2~{R},3~{S},5~{R})-3-oxidanyl-5-(7-thiophen-2-ylimidazo[4,5-b]pyridin-3-yl)oxolan-2-yl]methyl dihydrogen phosphate' ? 'C15 H16 N3 O6 P S' 397.343 A1MCL non-polymer . '[(2~{R},3~{S},5~{R})-5-(2-methanoyl-4-prop-1-ynyl-pyrrol-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate' ? 'C13 H16 N O7 P' 329.242 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -1 ? ? ? A . n A 1 2 SER 2 0 0 SER SER A . n A 1 3 ASP 3 1 1 ASP ASP A . n A 1 4 SER 4 2 2 SER SER A . n A 1 5 GLY 5 3 3 GLY GLY A . n A 1 6 CYS 6 4 4 CYS CYS A . n A 1 7 VAL 7 5 5 VAL VAL A . n A 1 8 VAL 8 6 6 VAL VAL A . n A 1 9 SER 9 7 7 SER SER A . n A 1 10 TRP 10 8 8 TRP TRP A . n A 1 11 LYS 11 9 9 LYS LYS A . n A 1 12 ASN 12 10 10 ASN ASN A . n A 1 13 LYS 13 11 11 LYS LYS A . n A 1 14 GLU 14 12 12 GLU GLU A . n A 1 15 LEU 15 13 13 LEU LEU A . n A 1 16 LYS 16 14 14 LYS LYS A . n A 1 17 CYS 17 15 15 CYS CYS A . n A 1 18 GLY 18 16 16 GLY GLY A . n A 1 19 SER 19 17 17 SER SER A . n A 1 20 GLY 20 18 18 GLY GLY A . n A 1 21 ILE 21 19 19 ILE ILE A . n A 1 22 PHE 22 20 20 PHE PHE A . n A 1 23 ILE 23 21 21 ILE ILE A . n A 1 24 THR 24 22 22 THR THR A . n A 1 25 ASP 25 23 23 ASP ASP A . n A 1 26 ASN 26 24 24 ASN ASN A . n A 1 27 VAL 27 25 25 VAL VAL A . n A 1 28 HIS 28 26 26 HIS HIS A . n A 1 29 THR 29 27 27 THR THR A . n A 1 30 TRP 30 28 28 TRP TRP A . n A 1 31 THR 31 29 29 THR THR A . n A 1 32 GLU 32 30 30 GLU GLU A . n A 1 33 GLN 33 31 31 GLN GLN A . n A 1 34 TYR 34 32 32 TYR TYR A . n A 1 35 LYS 35 33 33 LYS LYS A . n A 1 36 PHE 36 34 34 PHE PHE A . n A 1 37 GLN 37 35 35 GLN GLN A . n A 1 38 PRO 38 36 36 PRO PRO A . n A 1 39 GLU 39 37 37 GLU GLU A . n A 1 40 SER 40 38 38 SER SER A . n A 1 41 PRO 41 39 39 PRO PRO A . n A 1 42 SER 42 40 40 SER SER A . n A 1 43 LYS 43 41 41 LYS LYS A . n A 1 44 LEU 44 42 42 LEU LEU A . n A 1 45 ALA 45 43 43 ALA ALA A . n A 1 46 SER 46 44 44 SER SER A . n A 1 47 ALA 47 45 45 ALA ALA A . n A 1 48 ILE 48 46 46 ILE ILE A . n A 1 49 GLN 49 47 47 GLN GLN A . n A 1 50 LYS 50 48 48 LYS LYS A . n A 1 51 ALA 51 49 49 ALA ALA A . n A 1 52 HIS 52 50 50 HIS HIS A . n A 1 53 GLU 53 51 51 GLU GLU A . n A 1 54 GLU 54 52 52 GLU GLU A . n A 1 55 GLY 55 53 53 GLY GLY A . n A 1 56 ILE 56 54 54 ILE ILE A . n A 1 57 CYS 57 55 55 CYS CYS A . n A 1 58 GLY 58 56 56 GLY GLY A . n A 1 59 ILE 59 57 57 ILE ILE A . n A 1 60 ARG 60 58 58 ARG ARG A . n A 1 61 SER 61 59 59 SER SER A . n A 1 62 VAL 62 60 60 VAL VAL A . n A 1 63 THR 63 61 61 THR THR A . n A 1 64 ARG 64 62 62 ARG ARG A . n A 1 65 LEU 65 63 63 LEU LEU A . n A 1 66 GLU 66 64 64 GLU GLU A . n A 1 67 ASN 67 65 65 ASN ASN A . n A 1 68 LEU 68 66 66 LEU LEU A . n A 1 69 MET 69 67 67 MET MET A . n A 1 70 TRP 70 68 68 TRP TRP A . n A 1 71 LYS 71 69 69 LYS LYS A . n A 1 72 GLN 72 70 70 GLN GLN A . n A 1 73 ILE 73 71 71 ILE ILE A . n A 1 74 THR 74 72 72 THR THR A . n A 1 75 PRO 75 73 73 PRO PRO A . n A 1 76 GLU 76 74 74 GLU GLU A . n A 1 77 LEU 77 75 75 LEU LEU A . n A 1 78 ASN 78 76 76 ASN ASN A . n A 1 79 HIS 79 77 77 HIS HIS A . n A 1 80 ILE 80 78 78 ILE ILE A . n A 1 81 LEU 81 79 79 LEU LEU A . n A 1 82 SER 82 80 80 SER SER A . n A 1 83 GLU 83 81 81 GLU GLU A . n A 1 84 ASN 84 82 82 ASN ASN A . n A 1 85 GLU 85 83 83 GLU GLU A . n A 1 86 VAL 86 84 84 VAL VAL A . n A 1 87 LYS 87 85 85 LYS LYS A . n A 1 88 LEU 88 86 86 LEU LEU A . n A 1 89 THR 89 87 87 THR THR A . n A 1 90 ILE 90 88 88 ILE ILE A . n A 1 91 MET 91 89 89 MET MET A . n A 1 92 THR 92 90 90 THR THR A . n A 1 93 GLY 93 91 91 GLY GLY A . n A 1 94 ASP 94 92 92 ASP ASP A . n A 1 95 ILE 95 93 93 ILE ILE A . n A 1 96 LYS 96 94 94 LYS LYS A . n A 1 97 GLY 97 95 95 GLY GLY A . n A 1 98 ILE 98 96 96 ILE ILE A . n A 1 99 MET 99 97 97 MET MET A . n A 1 100 GLN 100 98 98 GLN GLN A . n A 1 101 ALA 101 99 99 ALA ALA A . n A 1 102 GLY 102 100 100 GLY GLY A . n A 1 103 LYS 103 101 101 LYS LYS A . n A 1 104 ARG 104 102 102 ARG ARG A . n A 1 105 SER 105 103 103 SER SER A . n A 1 106 LEU 106 104 104 LEU LEU A . n A 1 107 ARG 107 105 105 ARG ARG A . n A 1 108 PRO 108 106 106 PRO PRO A . n A 1 109 GLN 109 107 107 GLN GLN A . n A 1 110 PRO 110 108 108 PRO PRO A . n A 1 111 THR 111 109 109 THR THR A . n A 1 112 GLU 112 110 110 GLU GLU A . n A 1 113 LEU 113 111 111 LEU LEU A . n A 1 114 LYS 114 112 112 LYS LYS A . n A 1 115 TYR 115 113 113 TYR TYR A . n A 1 116 SER 116 114 114 SER SER A . n A 1 117 TRP 117 115 ? ? ? A . n A 1 118 LYS 118 116 ? ? ? A . n A 1 119 THR 119 117 ? ? ? A . n A 1 120 TRP 120 118 ? ? ? A . n A 1 121 GLY 121 119 ? ? ? A . n A 1 122 LYS 122 120 ? ? ? A . n A 1 123 ALA 123 121 ? ? ? A . n A 1 124 LYS 124 122 ? ? ? A . n A 1 125 MET 125 123 ? ? ? A . n A 1 126 LEU 126 124 ? ? ? A . n A 1 127 SER 127 125 125 SER SER A . n A 1 128 THR 128 126 126 THR THR A . n A 1 129 GLU 129 127 127 GLU GLU A . n A 1 130 SER 130 128 128 SER SER A . n A 1 131 HIS 131 129 129 HIS HIS A . n A 1 132 ASN 132 130 130 ASN ASN A . n A 1 133 GLN 133 131 131 GLN GLN A . n A 1 134 THR 134 132 132 THR THR A . n A 1 135 PHE 135 133 133 PHE PHE A . n A 1 136 LEU 136 134 134 LEU LEU A . n A 1 137 ILE 137 135 135 ILE ILE A . n A 1 138 ASP 138 136 136 ASP ASP A . n A 1 139 GLY 139 137 137 GLY GLY A . n A 1 140 PRO 140 138 138 PRO PRO A . n A 1 141 GLU 141 139 139 GLU GLU A . n A 1 142 THR 142 140 140 THR THR A . n A 1 143 ALA 143 141 141 ALA ALA A . n A 1 144 GLU 144 142 142 GLU GLU A . n A 1 145 CYS 145 143 143 CYS CYS A . n A 1 146 PRO 146 144 144 PRO PRO A . n A 1 147 ASN 147 145 145 ASN ASN A . n A 1 148 THR 148 146 146 THR THR A . n A 1 149 ASN 149 147 147 ASN ASN A . n A 1 150 ARG 150 148 148 ARG ARG A . n A 1 151 ALA 151 149 149 ALA ALA A . n A 1 152 TRP 152 150 150 TRP TRP A . n A 1 153 ASN 153 151 151 ASN ASN A . n A 1 154 SER 154 152 152 SER SER A . n A 1 155 LEU 155 153 153 LEU LEU A . n A 1 156 GLU 156 154 154 GLU GLU A . n A 1 157 VAL 157 155 155 VAL VAL A . n A 1 158 GLU 158 156 156 GLU GLU A . n A 1 159 ASP 159 157 157 ASP ASP A . n A 1 160 TYR 160 158 158 TYR TYR A . n A 1 161 GLY 161 159 159 GLY GLY A . n A 1 162 PHE 162 160 160 PHE PHE A . n A 1 163 GLY 163 161 161 GLY GLY A . n A 1 164 VAL 164 162 162 VAL VAL A . n A 1 165 PHE 165 163 163 PHE PHE A . n A 1 166 THR 166 164 164 THR THR A . n A 1 167 THR 167 165 165 THR THR A . n A 1 168 ASN 168 166 166 ASN ASN A . n A 1 169 ILE 169 167 167 ILE ILE A . n A 1 170 TRP 170 168 168 TRP TRP A . n A 1 171 LEU 171 169 169 LEU LEU A . n A 1 172 LYS 172 170 170 LYS LYS A . n A 1 173 LEU 173 171 171 LEU LEU A . n A 1 174 LYS 174 172 172 LYS LYS A . n A 1 175 GLU 175 173 173 GLU GLU A . n A 1 176 LYS 176 174 174 LYS LYS A . n A 1 177 GLN 177 175 175 GLN GLN A . n A 1 178 ASP 178 176 176 ASP ASP A . n A 1 179 VAL 179 177 177 VAL VAL A . n A 1 180 PHE 180 178 178 PHE PHE A . n A 1 181 CYS 181 179 179 CYS CYS A . n A 1 182 ASP 182 180 180 ASP ASP A . n A 1 183 SER 183 181 181 SER SER A . n A 1 184 LYS 184 182 182 LYS LYS A . n A 1 185 LEU 185 183 183 LEU LEU A . n A 1 186 MET 186 184 184 MET MET A . n A 1 187 SER 187 185 185 SER SER A . n A 1 188 ALA 188 186 186 ALA ALA A . n A 1 189 ALA 189 187 187 ALA ALA A . n A 1 190 ILE 190 188 188 ILE ILE A . n A 1 191 LYS 191 189 189 LYS LYS A . n A 1 192 ASP 192 190 190 ASP ASP A . n A 1 193 ASN 193 191 191 ASN ASN A . n A 1 194 ARG 194 192 192 ARG ARG A . n A 1 195 ALA 195 193 193 ALA ALA A . n A 1 196 VAL 196 194 194 VAL VAL A . n A 1 197 HIS 197 195 195 HIS HIS A . n A 1 198 ALA 198 196 196 ALA ALA A . n A 1 199 ASP 199 197 197 ASP ASP A . n A 1 200 MET 200 198 198 MET MET A . n A 1 201 GLY 201 199 199 GLY GLY A . n A 1 202 TYR 202 200 200 TYR TYR A . n A 1 203 TRP 203 201 201 TRP TRP A . n A 1 204 ILE 204 202 202 ILE ILE A . n A 1 205 GLU 205 203 203 GLU GLU A . n A 1 206 SER 206 204 204 SER SER A . n A 1 207 ALA 207 205 205 ALA ALA A . n A 1 208 LEU 208 206 206 LEU LEU A . n A 1 209 ASN 209 207 207 ASN ASN A . n A 1 210 ASP 210 208 208 ASP ASP A . n A 1 211 THR 211 209 209 THR THR A . n A 1 212 TRP 212 210 210 TRP TRP A . n A 1 213 LYS 213 211 211 LYS LYS A . n A 1 214 ILE 214 212 212 ILE ILE A . n A 1 215 GLU 215 213 213 GLU GLU A . n A 1 216 LYS 216 214 214 LYS LYS A . n A 1 217 ALA 217 215 215 ALA ALA A . n A 1 218 SER 218 216 216 SER SER A . n A 1 219 PHE 219 217 217 PHE PHE A . n A 1 220 ILE 220 218 218 ILE ILE A . n A 1 221 GLU 221 219 219 GLU GLU A . n A 1 222 VAL 222 220 220 VAL VAL A . n A 1 223 LYS 223 221 221 LYS LYS A . n A 1 224 ASN 224 222 222 ASN ASN A . n A 1 225 CYS 225 223 223 CYS CYS A . n A 1 226 HIS 226 224 224 HIS HIS A . n A 1 227 TRP 227 225 225 TRP TRP A . n A 1 228 PRO 228 226 226 PRO PRO A . n A 1 229 LYS 229 227 227 LYS LYS A . n A 1 230 SER 230 228 228 SER SER A . n A 1 231 HIS 231 229 229 HIS HIS A . n A 1 232 THR 232 230 230 THR THR A . n A 1 233 LEU 233 231 231 LEU LEU A . n A 1 234 TRP 234 232 232 TRP TRP A . n A 1 235 SER 235 233 233 SER SER A . n A 1 236 ASN 236 234 234 ASN ASN A . n A 1 237 GLY 237 235 235 GLY GLY A . n A 1 238 VAL 238 236 236 VAL VAL A . n A 1 239 LEU 239 237 237 LEU LEU A . n A 1 240 GLU 240 238 238 GLU GLU A . n A 1 241 SER 241 239 239 SER SER A . n A 1 242 GLU 242 240 240 GLU GLU A . n A 1 243 MET 243 241 241 MET MET A . n A 1 244 ILE 244 242 242 ILE ILE A . n A 1 245 ILE 245 243 243 ILE ILE A . n A 1 246 PRO 246 244 244 PRO PRO A . n A 1 247 LYS 247 245 245 LYS LYS A . n A 1 248 ASN 248 246 246 ASN ASN A . n A 1 249 LEU 249 247 247 LEU LEU A . n A 1 250 ALA 250 248 248 ALA ALA A . n A 1 251 GLY 251 249 249 GLY GLY A . n A 1 252 PRO 252 250 250 PRO PRO A . n A 1 253 VAL 253 251 251 VAL VAL A . n A 1 254 SER 254 252 252 SER SER A . n A 1 255 GLN 255 253 253 GLN GLN A . n A 1 256 HIS 256 254 254 HIS HIS A . n A 1 257 ASN 257 255 255 ASN ASN A . n A 1 258 TYR 258 256 256 TYR TYR A . n A 1 259 ARG 259 257 257 ARG ARG A . n A 1 260 PRO 260 258 258 PRO PRO A . n A 1 261 GLY 261 259 259 GLY GLY A . n A 1 262 TYR 262 260 260 TYR TYR A . n A 1 263 HIS 263 261 261 HIS HIS A . n A 1 264 THR 264 262 262 THR THR A . n A 1 265 GLN 265 263 263 GLN GLN A . n A 1 266 ILE 266 264 264 ILE ILE A . n A 1 267 THR 267 265 265 THR THR A . n A 1 268 GLY 268 266 266 GLY GLY A . n A 1 269 PRO 269 267 267 PRO PRO A . n A 1 270 TRP 270 268 268 TRP TRP A . n A 1 271 HIS 271 269 269 HIS HIS A . n A 1 272 LEU 272 270 270 LEU LEU A . n A 1 273 GLY 273 271 271 GLY GLY A . n A 1 274 LYS 274 272 272 LYS LYS A . n A 1 275 LEU 275 273 273 LEU LEU A . n A 1 276 GLU 276 274 274 GLU GLU A . n A 1 277 MET 277 275 275 MET MET A . n A 1 278 ASP 278 276 276 ASP ASP A . n A 1 279 PHE 279 277 277 PHE PHE A . n A 1 280 ASP 280 278 278 ASP ASP A . n A 1 281 PHE 281 279 279 PHE PHE A . n A 1 282 CYS 282 280 280 CYS CYS A . n A 1 283 ASP 283 281 281 ASP ASP A . n A 1 284 GLY 284 282 282 GLY GLY A . n A 1 285 THR 285 283 283 THR THR A . n A 1 286 THR 286 284 284 THR THR A . n A 1 287 VAL 287 285 285 VAL VAL A . n A 1 288 VAL 288 286 286 VAL VAL A . n A 1 289 VAL 289 287 287 VAL VAL A . n A 1 290 THR 290 288 288 THR THR A . n A 1 291 GLU 291 289 289 GLU GLU A . n A 1 292 ASP 292 290 290 ASP ASP A . n A 1 293 CYS 293 291 291 CYS CYS A . n A 1 294 GLY 294 292 292 GLY GLY A . n A 1 295 ASN 295 293 293 ASN ASN A . n A 1 296 ARG 296 294 294 ARG ARG A . n A 1 297 GLY 297 295 295 GLY GLY A . n A 1 298 PRO 298 296 296 PRO PRO A . n A 1 299 SER 299 297 297 SER SER A . n A 1 300 LEU 300 298 298 LEU LEU A . n A 1 301 ARG 301 299 299 ARG ARG A . n A 1 302 THR 302 300 300 THR THR A . n A 1 303 THR 303 301 301 THR THR A . n A 1 304 THR 304 302 302 THR THR A . n A 1 305 ALA 305 303 303 ALA ALA A . n A 1 306 SER 306 304 304 SER SER A . n A 1 307 GLY 307 305 305 GLY GLY A . n A 1 308 LYS 308 306 306 LYS LYS A . n A 1 309 LEU 309 307 307 LEU LEU A . n A 1 310 ILE 310 308 308 ILE ILE A . n A 1 311 THR 311 309 309 THR THR A . n A 1 312 GLU 312 310 310 GLU GLU A . n A 1 313 TRP 313 311 311 TRP TRP A . n A 1 314 CYS 314 312 312 CYS CYS A . n A 1 315 CYS 315 313 313 CYS CYS A . n A 1 316 ARG 316 314 314 ARG ARG A . n A 1 317 SER 317 315 315 SER SER A . n A 1 318 CYS 318 316 316 CYS CYS A . n A 1 319 THR 319 317 317 THR THR A . n A 1 320 LEU 320 318 318 LEU LEU A . n A 1 321 PRO 321 319 319 PRO PRO A . n A 1 322 PRO 322 320 320 PRO PRO A . n A 1 323 LEU 323 321 321 LEU LEU A . n A 1 324 ARG 324 322 322 ARG ARG A . n A 1 325 TYR 325 323 323 TYR TYR A . n A 1 326 ARG 326 324 324 ARG ARG A . n A 1 327 GLY 327 325 325 GLY GLY A . n A 1 328 GLU 328 326 326 GLU GLU A . n A 1 329 ASP 329 327 327 ASP ASP A . n A 1 330 GLY 330 328 328 GLY GLY A . n A 1 331 CYS 331 329 329 CYS CYS A . n A 1 332 TRP 332 330 330 TRP TRP A . n A 1 333 TYR 333 331 331 TYR TYR A . n A 1 334 GLY 334 332 332 GLY GLY A . n A 1 335 MET 335 333 333 MET MET A . n A 1 336 GLU 336 334 334 GLU GLU A . n A 1 337 ILE 337 335 335 ILE ILE A . n A 1 338 ARG 338 336 336 ARG ARG A . n A 1 339 PRO 339 337 337 PRO PRO A . n A 1 340 LEU 340 338 338 LEU LEU A . n A 1 341 LYS 341 339 339 LYS LYS A . n A 1 342 GLU 342 340 340 GLU GLU A . n A 1 343 LYS 343 341 341 LYS LYS A . n A 1 344 GLU 344 342 342 GLU GLU A . n A 1 345 GLU 345 343 343 GLU GLU A . n A 1 346 ASN 346 344 344 ASN ASN A . n A 1 347 LEU 347 345 345 LEU LEU A . n A 1 348 VAL 348 346 346 VAL VAL A . n A 1 349 ASN 349 347 347 ASN ASN A . n A 1 350 SER 350 348 348 SER SER A . n A 1 351 LEU 351 349 349 LEU LEU A . n A 1 352 VAL 352 350 350 VAL VAL A . n A 1 353 THR 353 351 ? ? ? A . n A 1 354 ALA 354 352 ? ? ? A . n A 1 355 GLU 355 353 ? ? ? A . n A 1 356 ASN 356 354 ? ? ? A . n A 1 357 LEU 357 355 ? ? ? A . n A 1 358 TYR 358 356 ? ? ? A . n A 1 359 PHE 359 357 ? ? ? A . n A 1 360 GLN 360 358 ? ? ? A . n A 1 361 GLY 361 359 ? ? ? A . n A 1 362 ALA 362 360 ? ? ? A . n A 1 363 ALA 363 361 ? ? ? A . n A 1 364 ALA 364 362 ? ? ? A . n A 1 365 HIS 365 363 ? ? ? A . n A 1 366 HIS 366 364 ? ? ? A . n A 1 367 HIS 367 365 ? ? ? A . n A 1 368 HIS 368 366 ? ? ? A . n A 1 369 HIS 369 367 ? ? ? A . n A 1 370 HIS 370 368 ? ? ? A . n B 2 1 DG 1 -10 ? ? ? C . n B 2 2 DG 2 -9 ? ? ? C . n B 2 3 DC 3 -8 ? ? ? C . n B 2 4 DT 4 -7 ? ? ? C . n B 2 5 DG 5 -6 ? ? ? C . n B 2 6 DG 6 -5 ? ? ? C . n B 2 7 DT 7 -4 ? ? ? C . n B 2 8 DC 8 -3 ? ? ? C . n B 2 9 DC 9 -2 ? ? ? C . n B 2 10 DG 10 -1 -1 DG DG C . n B 2 11 91N 11 0 0 91N 91N C . n B 2 12 DC 12 1 1 DC DC C . n B 2 13 DT 13 2 2 DT DT C . n B 2 14 DG 14 3 3 DG DG C . n B 2 15 DG 15 4 4 DG DG C . n B 2 16 DG 16 5 5 DG DG C . n B 2 17 DA 17 6 6 DA DA C . n B 2 18 DA 18 7 7 DA DA C . n B 2 19 DC 19 8 8 DC DC C . n B 2 20 DA 20 9 9 DA DA C . n B 2 21 DA 21 10 10 DA DA C . n B 2 22 DG 22 11 11 DG DG C . n B 2 23 91N 23 12 12 91N 91N C . n B 2 24 DG 24 13 13 DG DG C . n B 2 25 DG 25 14 14 DG DG C . n B 2 26 DC 26 15 15 DC DC C . n B 2 27 DG 27 16 16 DG DG C . n B 2 28 DG 28 17 17 DG DG C . n B 2 29 DG 29 18 18 DG DG C . n B 2 30 DA 30 19 19 DA DA C . n B 2 31 DG 31 20 20 DG DG C . n B 2 32 DG 32 21 21 DG DG C . n B 2 33 DG 33 22 22 DG DG C . n B 2 34 DA 34 23 23 DA DA C . n B 2 35 A1MCL 35 24 24 A1MCL PX2 C . n B 2 36 DG 36 25 25 DG DG C . n B 2 37 DG 37 26 26 DG DG C . n B 2 38 DG 38 27 27 DG DG C . n B 2 39 DT 39 28 28 DT DT C . n B 2 40 DG 40 29 29 DG DG C . n B 2 41 DT 41 30 30 DT DT C . n B 2 42 DG 42 31 31 DG DG C . n B 2 43 DG 43 32 32 DG DG C . n B 2 44 DG 44 33 33 DG DG C . n B 2 45 DT 45 34 34 DT DT C . n B 2 46 DG 46 35 35 DG DG C . n B 2 47 DC 47 36 36 DC DC C . n B 2 48 DG 48 37 37 DG DG C . n B 2 49 DA 49 38 38 DA DA C . n B 2 50 DC 50 39 39 DC DC C . n B 2 51 DA 51 40 40 DA DA C . n B 2 52 DA 52 41 41 DA DA C . n B 2 53 DG 53 42 42 DG DG C . n B 2 54 DC 54 43 43 DC DC C . n B 2 55 DG 55 44 ? ? ? C . n B 2 56 DG 56 45 ? ? ? C . n B 2 57 DA 57 46 ? ? ? C . n B 2 58 DC 58 47 ? ? ? C . n B 2 59 DC 59 48 ? ? ? C . n B 2 60 DA 60 49 ? ? ? C . n B 2 61 DG 61 50 ? ? ? C . n B 2 62 DC 62 51 ? ? ? C . n B 2 63 DC 63 52 ? ? ? C . n B 2 64 DC 64 53 ? ? ? C . n B 2 65 DG 65 54 ? ? ? C . n B 2 66 DC 66 55 ? ? ? C . n B 2 67 DG 67 56 ? ? ? C . n B 2 68 DA 68 57 ? ? ? C . n B 2 69 DA 69 58 ? ? ? C . n B 2 70 DG 70 59 ? ? ? C . n B 2 71 DC 71 60 ? ? ? C . n B 2 72 DG 72 61 ? ? ? C . n C 1 1 ALA 1 -1 ? ? ? B . n C 1 2 SER 2 0 0 SER SER B . n C 1 3 ASP 3 1 1 ASP ASP B . n C 1 4 SER 4 2 2 SER SER B . n C 1 5 GLY 5 3 3 GLY GLY B . n C 1 6 CYS 6 4 4 CYS CYS B . n C 1 7 VAL 7 5 5 VAL VAL B . n C 1 8 VAL 8 6 6 VAL VAL B . n C 1 9 SER 9 7 7 SER SER B . n C 1 10 TRP 10 8 8 TRP TRP B . n C 1 11 LYS 11 9 9 LYS LYS B . n C 1 12 ASN 12 10 10 ASN ASN B . n C 1 13 LYS 13 11 11 LYS LYS B . n C 1 14 GLU 14 12 12 GLU GLU B . n C 1 15 LEU 15 13 13 LEU LEU B . n C 1 16 LYS 16 14 14 LYS LYS B . n C 1 17 CYS 17 15 15 CYS CYS B . n C 1 18 GLY 18 16 16 GLY GLY B . n C 1 19 SER 19 17 17 SER SER B . n C 1 20 GLY 20 18 18 GLY GLY B . n C 1 21 ILE 21 19 19 ILE ILE B . n C 1 22 PHE 22 20 20 PHE PHE B . n C 1 23 ILE 23 21 21 ILE ILE B . n C 1 24 THR 24 22 22 THR THR B . n C 1 25 ASP 25 23 23 ASP ASP B . n C 1 26 ASN 26 24 24 ASN ASN B . n C 1 27 VAL 27 25 25 VAL VAL B . n C 1 28 HIS 28 26 26 HIS HIS B . n C 1 29 THR 29 27 27 THR THR B . n C 1 30 TRP 30 28 28 TRP TRP B . n C 1 31 THR 31 29 29 THR THR B . n C 1 32 GLU 32 30 30 GLU GLU B . n C 1 33 GLN 33 31 31 GLN GLN B . n C 1 34 TYR 34 32 32 TYR TYR B . n C 1 35 LYS 35 33 33 LYS LYS B . n C 1 36 PHE 36 34 34 PHE PHE B . n C 1 37 GLN 37 35 35 GLN GLN B . n C 1 38 PRO 38 36 36 PRO PRO B . n C 1 39 GLU 39 37 37 GLU GLU B . n C 1 40 SER 40 38 38 SER SER B . n C 1 41 PRO 41 39 39 PRO PRO B . n C 1 42 SER 42 40 40 SER SER B . n C 1 43 LYS 43 41 41 LYS LYS B . n C 1 44 LEU 44 42 42 LEU LEU B . n C 1 45 ALA 45 43 43 ALA ALA B . n C 1 46 SER 46 44 44 SER SER B . n C 1 47 ALA 47 45 45 ALA ALA B . n C 1 48 ILE 48 46 46 ILE ILE B . n C 1 49 GLN 49 47 47 GLN GLN B . n C 1 50 LYS 50 48 48 LYS LYS B . n C 1 51 ALA 51 49 49 ALA ALA B . n C 1 52 HIS 52 50 50 HIS HIS B . n C 1 53 GLU 53 51 51 GLU GLU B . n C 1 54 GLU 54 52 52 GLU GLU B . n C 1 55 GLY 55 53 53 GLY GLY B . n C 1 56 ILE 56 54 54 ILE ILE B . n C 1 57 CYS 57 55 55 CYS CYS B . n C 1 58 GLY 58 56 56 GLY GLY B . n C 1 59 ILE 59 57 57 ILE ILE B . n C 1 60 ARG 60 58 58 ARG ARG B . n C 1 61 SER 61 59 59 SER SER B . n C 1 62 VAL 62 60 60 VAL VAL B . n C 1 63 THR 63 61 61 THR THR B . n C 1 64 ARG 64 62 62 ARG ARG B . n C 1 65 LEU 65 63 63 LEU LEU B . n C 1 66 GLU 66 64 64 GLU GLU B . n C 1 67 ASN 67 65 65 ASN ASN B . n C 1 68 LEU 68 66 66 LEU LEU B . n C 1 69 MET 69 67 67 MET MET B . n C 1 70 TRP 70 68 68 TRP TRP B . n C 1 71 LYS 71 69 69 LYS LYS B . n C 1 72 GLN 72 70 70 GLN GLN B . n C 1 73 ILE 73 71 71 ILE ILE B . n C 1 74 THR 74 72 72 THR THR B . n C 1 75 PRO 75 73 73 PRO PRO B . n C 1 76 GLU 76 74 74 GLU GLU B . n C 1 77 LEU 77 75 75 LEU LEU B . n C 1 78 ASN 78 76 76 ASN ASN B . n C 1 79 HIS 79 77 77 HIS HIS B . n C 1 80 ILE 80 78 78 ILE ILE B . n C 1 81 LEU 81 79 79 LEU LEU B . n C 1 82 SER 82 80 80 SER SER B . n C 1 83 GLU 83 81 81 GLU GLU B . n C 1 84 ASN 84 82 82 ASN ASN B . n C 1 85 GLU 85 83 83 GLU GLU B . n C 1 86 VAL 86 84 84 VAL VAL B . n C 1 87 LYS 87 85 85 LYS LYS B . n C 1 88 LEU 88 86 86 LEU LEU B . n C 1 89 THR 89 87 87 THR THR B . n C 1 90 ILE 90 88 88 ILE ILE B . n C 1 91 MET 91 89 89 MET MET B . n C 1 92 THR 92 90 90 THR THR B . n C 1 93 GLY 93 91 91 GLY GLY B . n C 1 94 ASP 94 92 92 ASP ASP B . n C 1 95 ILE 95 93 93 ILE ILE B . n C 1 96 LYS 96 94 94 LYS LYS B . n C 1 97 GLY 97 95 95 GLY GLY B . n C 1 98 ILE 98 96 96 ILE ILE B . n C 1 99 MET 99 97 97 MET MET B . n C 1 100 GLN 100 98 98 GLN GLN B . n C 1 101 ALA 101 99 99 ALA ALA B . n C 1 102 GLY 102 100 100 GLY GLY B . n C 1 103 LYS 103 101 101 LYS LYS B . n C 1 104 ARG 104 102 102 ARG ARG B . n C 1 105 SER 105 103 103 SER SER B . n C 1 106 LEU 106 104 104 LEU LEU B . n C 1 107 ARG 107 105 105 ARG ARG B . n C 1 108 PRO 108 106 106 PRO PRO B . n C 1 109 GLN 109 107 107 GLN GLN B . n C 1 110 PRO 110 108 108 PRO PRO B . n C 1 111 THR 111 109 109 THR THR B . n C 1 112 GLU 112 110 110 GLU GLU B . n C 1 113 LEU 113 111 111 LEU LEU B . n C 1 114 LYS 114 112 112 LYS LYS B . n C 1 115 TYR 115 113 113 TYR TYR B . n C 1 116 SER 116 114 114 SER SER B . n C 1 117 TRP 117 115 ? ? ? B . n C 1 118 LYS 118 116 ? ? ? B . n C 1 119 THR 119 117 ? ? ? B . n C 1 120 TRP 120 118 ? ? ? B . n C 1 121 GLY 121 119 ? ? ? B . n C 1 122 LYS 122 120 ? ? ? B . n C 1 123 ALA 123 121 ? ? ? B . n C 1 124 LYS 124 122 ? ? ? B . n C 1 125 MET 125 123 ? ? ? B . n C 1 126 LEU 126 124 ? ? ? B . n C 1 127 SER 127 125 125 SER SER B . n C 1 128 THR 128 126 126 THR THR B . n C 1 129 GLU 129 127 127 GLU GLU B . n C 1 130 SER 130 128 128 SER SER B . n C 1 131 HIS 131 129 129 HIS HIS B . n C 1 132 ASN 132 130 130 ASN ASN B . n C 1 133 GLN 133 131 131 GLN GLN B . n C 1 134 THR 134 132 132 THR THR B . n C 1 135 PHE 135 133 133 PHE PHE B . n C 1 136 LEU 136 134 134 LEU LEU B . n C 1 137 ILE 137 135 135 ILE ILE B . n C 1 138 ASP 138 136 136 ASP ASP B . n C 1 139 GLY 139 137 137 GLY GLY B . n C 1 140 PRO 140 138 138 PRO PRO B . n C 1 141 GLU 141 139 139 GLU GLU B . n C 1 142 THR 142 140 140 THR THR B . n C 1 143 ALA 143 141 141 ALA ALA B . n C 1 144 GLU 144 142 142 GLU GLU B . n C 1 145 CYS 145 143 143 CYS CYS B . n C 1 146 PRO 146 144 144 PRO PRO B . n C 1 147 ASN 147 145 145 ASN ASN B . n C 1 148 THR 148 146 146 THR THR B . n C 1 149 ASN 149 147 147 ASN ASN B . n C 1 150 ARG 150 148 148 ARG ARG B . n C 1 151 ALA 151 149 149 ALA ALA B . n C 1 152 TRP 152 150 150 TRP TRP B . n C 1 153 ASN 153 151 151 ASN ASN B . n C 1 154 SER 154 152 152 SER SER B . n C 1 155 LEU 155 153 153 LEU LEU B . n C 1 156 GLU 156 154 154 GLU GLU B . n C 1 157 VAL 157 155 155 VAL VAL B . n C 1 158 GLU 158 156 156 GLU GLU B . n C 1 159 ASP 159 157 157 ASP ASP B . n C 1 160 TYR 160 158 158 TYR TYR B . n C 1 161 GLY 161 159 159 GLY GLY B . n C 1 162 PHE 162 160 160 PHE PHE B . n C 1 163 GLY 163 161 161 GLY GLY B . n C 1 164 VAL 164 162 162 VAL VAL B . n C 1 165 PHE 165 163 163 PHE PHE B . n C 1 166 THR 166 164 164 THR THR B . n C 1 167 THR 167 165 165 THR THR B . n C 1 168 ASN 168 166 166 ASN ASN B . n C 1 169 ILE 169 167 167 ILE ILE B . n C 1 170 TRP 170 168 168 TRP TRP B . n C 1 171 LEU 171 169 169 LEU LEU B . n C 1 172 LYS 172 170 170 LYS LYS B . n C 1 173 LEU 173 171 171 LEU LEU B . n C 1 174 LYS 174 172 172 LYS LYS B . n C 1 175 GLU 175 173 173 GLU GLU B . n C 1 176 LYS 176 174 174 LYS LYS B . n C 1 177 GLN 177 175 175 GLN GLN B . n C 1 178 ASP 178 176 176 ASP ASP B . n C 1 179 VAL 179 177 177 VAL VAL B . n C 1 180 PHE 180 178 178 PHE PHE B . n C 1 181 CYS 181 179 179 CYS CYS B . n C 1 182 ASP 182 180 180 ASP ASP B . n C 1 183 SER 183 181 181 SER SER B . n C 1 184 LYS 184 182 182 LYS LYS B . n C 1 185 LEU 185 183 183 LEU LEU B . n C 1 186 MET 186 184 184 MET MET B . n C 1 187 SER 187 185 185 SER SER B . n C 1 188 ALA 188 186 186 ALA ALA B . n C 1 189 ALA 189 187 187 ALA ALA B . n C 1 190 ILE 190 188 188 ILE ILE B . n C 1 191 LYS 191 189 189 LYS LYS B . n C 1 192 ASP 192 190 190 ASP ASP B . n C 1 193 ASN 193 191 191 ASN ASN B . n C 1 194 ARG 194 192 192 ARG ARG B . n C 1 195 ALA 195 193 193 ALA ALA B . n C 1 196 VAL 196 194 194 VAL VAL B . n C 1 197 HIS 197 195 195 HIS HIS B . n C 1 198 ALA 198 196 196 ALA ALA B . n C 1 199 ASP 199 197 197 ASP ASP B . n C 1 200 MET 200 198 198 MET MET B . n C 1 201 GLY 201 199 199 GLY GLY B . n C 1 202 TYR 202 200 200 TYR TYR B . n C 1 203 TRP 203 201 201 TRP TRP B . n C 1 204 ILE 204 202 202 ILE ILE B . n C 1 205 GLU 205 203 203 GLU GLU B . n C 1 206 SER 206 204 204 SER SER B . n C 1 207 ALA 207 205 205 ALA ALA B . n C 1 208 LEU 208 206 206 LEU LEU B . n C 1 209 ASN 209 207 207 ASN ASN B . n C 1 210 ASP 210 208 208 ASP ASP B . n C 1 211 THR 211 209 209 THR THR B . n C 1 212 TRP 212 210 210 TRP TRP B . n C 1 213 LYS 213 211 211 LYS LYS B . n C 1 214 ILE 214 212 212 ILE ILE B . n C 1 215 GLU 215 213 213 GLU GLU B . n C 1 216 LYS 216 214 214 LYS LYS B . n C 1 217 ALA 217 215 215 ALA ALA B . n C 1 218 SER 218 216 216 SER SER B . n C 1 219 PHE 219 217 217 PHE PHE B . n C 1 220 ILE 220 218 218 ILE ILE B . n C 1 221 GLU 221 219 219 GLU GLU B . n C 1 222 VAL 222 220 220 VAL VAL B . n C 1 223 LYS 223 221 221 LYS LYS B . n C 1 224 ASN 224 222 222 ASN ASN B . n C 1 225 CYS 225 223 223 CYS CYS B . n C 1 226 HIS 226 224 224 HIS HIS B . n C 1 227 TRP 227 225 225 TRP TRP B . n C 1 228 PRO 228 226 226 PRO PRO B . n C 1 229 LYS 229 227 227 LYS LYS B . n C 1 230 SER 230 228 228 SER SER B . n C 1 231 HIS 231 229 229 HIS HIS B . n C 1 232 THR 232 230 230 THR THR B . n C 1 233 LEU 233 231 231 LEU LEU B . n C 1 234 TRP 234 232 232 TRP TRP B . n C 1 235 SER 235 233 233 SER SER B . n C 1 236 ASN 236 234 234 ASN ASN B . n C 1 237 GLY 237 235 235 GLY GLY B . n C 1 238 VAL 238 236 236 VAL VAL B . n C 1 239 LEU 239 237 237 LEU LEU B . n C 1 240 GLU 240 238 238 GLU GLU B . n C 1 241 SER 241 239 239 SER SER B . n C 1 242 GLU 242 240 240 GLU GLU B . n C 1 243 MET 243 241 241 MET MET B . n C 1 244 ILE 244 242 242 ILE ILE B . n C 1 245 ILE 245 243 243 ILE ILE B . n C 1 246 PRO 246 244 244 PRO PRO B . n C 1 247 LYS 247 245 245 LYS LYS B . n C 1 248 ASN 248 246 246 ASN ASN B . n C 1 249 LEU 249 247 247 LEU LEU B . n C 1 250 ALA 250 248 248 ALA ALA B . n C 1 251 GLY 251 249 249 GLY GLY B . n C 1 252 PRO 252 250 250 PRO PRO B . n C 1 253 VAL 253 251 251 VAL VAL B . n C 1 254 SER 254 252 252 SER SER B . n C 1 255 GLN 255 253 253 GLN GLN B . n C 1 256 HIS 256 254 254 HIS HIS B . n C 1 257 ASN 257 255 255 ASN ASN B . n C 1 258 TYR 258 256 256 TYR TYR B . n C 1 259 ARG 259 257 257 ARG ARG B . n C 1 260 PRO 260 258 258 PRO PRO B . n C 1 261 GLY 261 259 259 GLY GLY B . n C 1 262 TYR 262 260 260 TYR TYR B . n C 1 263 HIS 263 261 261 HIS HIS B . n C 1 264 THR 264 262 262 THR THR B . n C 1 265 GLN 265 263 263 GLN GLN B . n C 1 266 ILE 266 264 264 ILE ILE B . n C 1 267 THR 267 265 265 THR THR B . n C 1 268 GLY 268 266 266 GLY GLY B . n C 1 269 PRO 269 267 267 PRO PRO B . n C 1 270 TRP 270 268 268 TRP TRP B . n C 1 271 HIS 271 269 269 HIS HIS B . n C 1 272 LEU 272 270 270 LEU LEU B . n C 1 273 GLY 273 271 271 GLY GLY B . n C 1 274 LYS 274 272 272 LYS LYS B . n C 1 275 LEU 275 273 273 LEU LEU B . n C 1 276 GLU 276 274 274 GLU GLU B . n C 1 277 MET 277 275 275 MET MET B . n C 1 278 ASP 278 276 276 ASP ASP B . n C 1 279 PHE 279 277 277 PHE PHE B . n C 1 280 ASP 280 278 278 ASP ASP B . n C 1 281 PHE 281 279 279 PHE PHE B . n C 1 282 CYS 282 280 280 CYS CYS B . n C 1 283 ASP 283 281 281 ASP ASP B . n C 1 284 GLY 284 282 282 GLY GLY B . n C 1 285 THR 285 283 283 THR THR B . n C 1 286 THR 286 284 284 THR THR B . n C 1 287 VAL 287 285 285 VAL VAL B . n C 1 288 VAL 288 286 286 VAL VAL B . n C 1 289 VAL 289 287 287 VAL VAL B . n C 1 290 THR 290 288 288 THR THR B . n C 1 291 GLU 291 289 289 GLU GLU B . n C 1 292 ASP 292 290 290 ASP ASP B . n C 1 293 CYS 293 291 291 CYS CYS B . n C 1 294 GLY 294 292 292 GLY GLY B . n C 1 295 ASN 295 293 293 ASN ASN B . n C 1 296 ARG 296 294 294 ARG ARG B . n C 1 297 GLY 297 295 295 GLY GLY B . n C 1 298 PRO 298 296 296 PRO PRO B . n C 1 299 SER 299 297 297 SER SER B . n C 1 300 LEU 300 298 298 LEU LEU B . n C 1 301 ARG 301 299 299 ARG ARG B . n C 1 302 THR 302 300 300 THR THR B . n C 1 303 THR 303 301 301 THR THR B . n C 1 304 THR 304 302 302 THR THR B . n C 1 305 ALA 305 303 303 ALA ALA B . n C 1 306 SER 306 304 304 SER SER B . n C 1 307 GLY 307 305 305 GLY GLY B . n C 1 308 LYS 308 306 306 LYS LYS B . n C 1 309 LEU 309 307 307 LEU LEU B . n C 1 310 ILE 310 308 308 ILE ILE B . n C 1 311 THR 311 309 309 THR THR B . n C 1 312 GLU 312 310 310 GLU GLU B . n C 1 313 TRP 313 311 311 TRP TRP B . n C 1 314 CYS 314 312 312 CYS CYS B . n C 1 315 CYS 315 313 313 CYS CYS B . n C 1 316 ARG 316 314 314 ARG ARG B . n C 1 317 SER 317 315 315 SER SER B . n C 1 318 CYS 318 316 316 CYS CYS B . n C 1 319 THR 319 317 317 THR THR B . n C 1 320 LEU 320 318 318 LEU LEU B . n C 1 321 PRO 321 319 319 PRO PRO B . n C 1 322 PRO 322 320 320 PRO PRO B . n C 1 323 LEU 323 321 321 LEU LEU B . n C 1 324 ARG 324 322 322 ARG ARG B . n C 1 325 TYR 325 323 323 TYR TYR B . n C 1 326 ARG 326 324 324 ARG ARG B . n C 1 327 GLY 327 325 325 GLY GLY B . n C 1 328 GLU 328 326 326 GLU GLU B . n C 1 329 ASP 329 327 327 ASP ASP B . n C 1 330 GLY 330 328 328 GLY GLY B . n C 1 331 CYS 331 329 329 CYS CYS B . n C 1 332 TRP 332 330 330 TRP TRP B . n C 1 333 TYR 333 331 331 TYR TYR B . n C 1 334 GLY 334 332 332 GLY GLY B . n C 1 335 MET 335 333 333 MET MET B . n C 1 336 GLU 336 334 334 GLU GLU B . n C 1 337 ILE 337 335 335 ILE ILE B . n C 1 338 ARG 338 336 336 ARG ARG B . n C 1 339 PRO 339 337 337 PRO PRO B . n C 1 340 LEU 340 338 338 LEU LEU B . n C 1 341 LYS 341 339 339 LYS LYS B . n C 1 342 GLU 342 340 340 GLU GLU B . n C 1 343 LYS 343 341 ? ? ? B . n C 1 344 GLU 344 342 ? ? ? B . n C 1 345 GLU 345 343 ? ? ? B . n C 1 346 ASN 346 344 ? ? ? B . n C 1 347 LEU 347 345 ? ? ? B . n C 1 348 VAL 348 346 ? ? ? B . n C 1 349 ASN 349 347 ? ? ? B . n C 1 350 SER 350 348 ? ? ? B . n C 1 351 LEU 351 349 ? ? ? B . n C 1 352 VAL 352 350 ? ? ? B . n C 1 353 THR 353 351 ? ? ? B . n C 1 354 ALA 354 352 ? ? ? B . n C 1 355 GLU 355 353 ? ? ? B . n C 1 356 ASN 356 354 ? ? ? B . n C 1 357 LEU 357 355 ? ? ? B . n C 1 358 TYR 358 356 ? ? ? B . n C 1 359 PHE 359 357 ? ? ? B . n C 1 360 GLN 360 358 ? ? ? B . n C 1 361 GLY 361 359 ? ? ? B . n C 1 362 ALA 362 360 ? ? ? B . n C 1 363 ALA 363 361 ? ? ? B . n C 1 364 ALA 364 362 ? ? ? B . n C 1 365 HIS 365 363 ? ? ? B . n C 1 366 HIS 366 364 ? ? ? B . n C 1 367 HIS 367 365 ? ? ? B . n C 1 368 HIS 368 366 ? ? ? B . n C 1 369 HIS 369 367 ? ? ? B . n C 1 370 HIS 370 368 ? ? ? B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 A1MCL ? ? A1MCL ? ? 'SUBJECT OF INVESTIGATION' ? 2 91N ? ? 91N ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG 1 401 351 NAG NAG A . E 3 NAG 1 401 353 NAG NAG B . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9XHA _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9XHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9XHA _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9XHA _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.39 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 6582 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.516 ? 9125 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 19.919 ? 1210 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.040 ? 989 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 998 ? f_plane_restr ? ? ? # _struct.entry_id 9XHA _struct.title 'Cryo-EM structure of unnatural-base aptamer AptD2 with DENV2 NS1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9XHA _struct_keywords.text 'non-structural protein, unnatural-base aptamer, VIRAL PROTEIN, VIRAL PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 3 ? E N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP POLG_DEN26 P29990 ? 1 ;DSGCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILS ENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDYGF GVFTTNIWLKLKEKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKNCHWPKSHTLWSNGVLESE MIIPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDFDFCDGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPP LRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA ; 776 2 PDB 9XHA 9XHA ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9XHA A 3 ? 354 ? P29990 776 ? 1127 ? 1 352 2 2 9XHA C 1 ? 72 ? 9XHA -10 ? 61 ? -10 61 3 1 9XHA B 3 ? 354 ? P29990 776 ? 1127 ? 1 352 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9XHA ALA A 1 ? UNP P29990 ? ? 'expression tag' -1 1 1 9XHA SER A 2 ? UNP P29990 ? ? 'expression tag' 0 2 1 9XHA GLU A 355 ? UNP P29990 ? ? 'expression tag' 353 3 1 9XHA ASN A 356 ? UNP P29990 ? ? 'expression tag' 354 4 1 9XHA LEU A 357 ? UNP P29990 ? ? 'expression tag' 355 5 1 9XHA TYR A 358 ? UNP P29990 ? ? 'expression tag' 356 6 1 9XHA PHE A 359 ? UNP P29990 ? ? 'expression tag' 357 7 1 9XHA GLN A 360 ? UNP P29990 ? ? 'expression tag' 358 8 1 9XHA GLY A 361 ? UNP P29990 ? ? 'expression tag' 359 9 1 9XHA ALA A 362 ? UNP P29990 ? ? 'expression tag' 360 10 1 9XHA ALA A 363 ? UNP P29990 ? ? 'expression tag' 361 11 1 9XHA ALA A 364 ? UNP P29990 ? ? 'expression tag' 362 12 1 9XHA HIS A 365 ? UNP P29990 ? ? 'expression tag' 363 13 1 9XHA HIS A 366 ? UNP P29990 ? ? 'expression tag' 364 14 1 9XHA HIS A 367 ? UNP P29990 ? ? 'expression tag' 365 15 1 9XHA HIS A 368 ? UNP P29990 ? ? 'expression tag' 366 16 1 9XHA HIS A 369 ? UNP P29990 ? ? 'expression tag' 367 17 1 9XHA HIS A 370 ? UNP P29990 ? ? 'expression tag' 368 18 3 9XHA ALA B 1 ? UNP P29990 ? ? 'expression tag' -1 19 3 9XHA SER B 2 ? UNP P29990 ? ? 'expression tag' 0 20 3 9XHA GLU B 355 ? UNP P29990 ? ? 'expression tag' 353 21 3 9XHA ASN B 356 ? UNP P29990 ? ? 'expression tag' 354 22 3 9XHA LEU B 357 ? UNP P29990 ? ? 'expression tag' 355 23 3 9XHA TYR B 358 ? UNP P29990 ? ? 'expression tag' 356 24 3 9XHA PHE B 359 ? UNP P29990 ? ? 'expression tag' 357 25 3 9XHA GLN B 360 ? UNP P29990 ? ? 'expression tag' 358 26 3 9XHA GLY B 361 ? UNP P29990 ? ? 'expression tag' 359 27 3 9XHA ALA B 362 ? UNP P29990 ? ? 'expression tag' 360 28 3 9XHA ALA B 363 ? UNP P29990 ? ? 'expression tag' 361 29 3 9XHA ALA B 364 ? UNP P29990 ? ? 'expression tag' 362 30 3 9XHA HIS B 365 ? UNP P29990 ? ? 'expression tag' 363 31 3 9XHA HIS B 366 ? UNP P29990 ? ? 'expression tag' 364 32 3 9XHA HIS B 367 ? UNP P29990 ? ? 'expression tag' 365 33 3 9XHA HIS B 368 ? UNP P29990 ? ? 'expression tag' 366 34 3 9XHA HIS B 369 ? UNP P29990 ? ? 'expression tag' 367 35 3 9XHA HIS B 370 ? UNP P29990 ? ? 'expression tag' 368 36 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 40 ? GLU A 54 ? SER A 38 GLU A 52 1 ? 15 HELX_P HELX_P2 AA2 THR A 63 ? ASN A 84 ? THR A 61 ASN A 82 1 ? 22 HELX_P HELX_P3 AA3 PRO A 146 ? THR A 148 ? PRO A 144 THR A 146 5 ? 3 HELX_P HELX_P4 AA4 ASP A 182 ? LEU A 185 ? ASP A 180 LEU A 183 5 ? 4 HELX_P HELX_P5 AA5 PRO A 228 ? THR A 232 ? PRO A 226 THR A 230 5 ? 5 HELX_P HELX_P6 AA6 LEU A 239 ? MET A 243 ? LEU A 237 MET A 241 5 ? 5 HELX_P HELX_P7 AA7 PRO A 246 ? ALA A 250 ? PRO A 244 ALA A 248 5 ? 5 HELX_P HELX_P8 AA8 PRO A 269 ? GLY A 273 ? PRO A 267 GLY A 271 5 ? 5 HELX_P HELX_P9 AA9 LYS A 343 ? LEU A 347 ? LYS A 341 LEU A 345 5 ? 5 HELX_P HELX_P10 AB1 ASN C 26 ? TRP C 30 ? ASN B 24 TRP B 28 5 ? 5 HELX_P HELX_P11 AB2 SER C 40 ? GLU C 54 ? SER B 38 GLU B 52 1 ? 15 HELX_P HELX_P12 AB3 THR C 63 ? ASN C 84 ? THR B 61 ASN B 82 1 ? 22 HELX_P HELX_P13 AB4 PRO C 146 ? THR C 148 ? PRO B 144 THR B 146 5 ? 3 HELX_P HELX_P14 AB5 ASP C 182 ? LEU C 185 ? ASP B 180 LEU B 183 5 ? 4 HELX_P HELX_P15 AB6 PRO C 228 ? THR C 232 ? PRO B 226 THR B 230 5 ? 5 HELX_P HELX_P16 AB7 LEU C 239 ? MET C 243 ? LEU B 237 MET B 241 5 ? 5 HELX_P HELX_P17 AB8 PRO C 246 ? ALA C 250 ? PRO B 244 ALA B 248 5 ? 5 HELX_P HELX_P18 AB9 PRO C 269 ? GLY C 273 ? PRO B 267 GLY B 271 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 17 SG ? ? A CYS 4 A CYS 15 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 145 SG ? ? A CYS 55 A CYS 143 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf3 disulf ? ? A CYS 181 SG ? ? ? 1_555 A CYS 225 SG ? ? A CYS 179 A CYS 223 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf4 disulf ? ? A CYS 282 SG ? ? ? 1_555 A CYS 331 SG ? ? A CYS 280 A CYS 329 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? A CYS 293 SG ? ? ? 1_555 A CYS 314 SG ? ? A CYS 291 A CYS 312 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? A CYS 315 SG ? ? ? 1_555 A CYS 318 SG ? ? A CYS 313 A CYS 316 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf7 disulf ? ? C CYS 6 SG ? ? ? 1_555 C CYS 17 SG ? ? B CYS 4 B CYS 15 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf8 disulf ? ? C CYS 57 SG ? ? ? 1_555 C CYS 145 SG ? ? B CYS 55 B CYS 143 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf9 disulf ? ? C CYS 181 SG ? ? ? 1_555 C CYS 225 SG ? ? B CYS 179 B CYS 223 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf10 disulf ? ? C CYS 282 SG ? ? ? 1_555 C CYS 331 SG ? ? B CYS 280 B CYS 329 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf11 disulf ? ? C CYS 293 SG ? ? ? 1_555 C CYS 314 SG ? ? B CYS 291 B CYS 312 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf12 disulf ? ? C CYS 315 SG ? ? ? 1_555 C CYS 318 SG ? ? B CYS 313 B CYS 316 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale one ? A ASN 209 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 207 A NAG 401 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale2 covale both ? B DG 10 "O3'" ? ? ? 1_555 B 91N 11 P ? ? C DG -1 C 91N 0 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale3 covale one ? B 91N 11 "O3'" ? ? ? 1_555 B DC 12 P ? ? C 91N 0 C DC 1 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale4 covale both ? B DG 22 "O3'" ? ? ? 1_555 B 91N 23 P ? ? C DG 11 C 91N 12 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale5 covale one ? B 91N 23 "O3'" ? ? ? 1_555 B DG 24 P ? ? C 91N 12 C DG 13 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale both ? B DA 34 "O3'" ? ? ? 1_555 B A1MCL 35 P ? ? C DA 23 C A1MCL 24 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale7 covale one ? B A1MCL 35 "O3'" ? ? ? 1_555 B DG 36 P ? ? C A1MCL 24 C DG 25 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale8 covale one ? C ASN 209 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 207 B NAG 401 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation hydrog1 hydrog ? ? B DG 10 N1 ? ? ? 1_555 B DC 54 N3 ? ? C DG -1 C DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 10 N2 ? ? ? 1_555 B DC 54 O2 ? ? C DG -1 C DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 10 O6 ? ? ? 1_555 B DC 54 N4 ? ? C DG -1 C DC 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 12 N3 ? ? ? 1_555 B DG 53 N1 ? ? C DC 1 C DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 12 N4 ? ? ? 1_555 B DG 53 O6 ? ? C DC 1 C DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 12 O2 ? ? ? 1_555 B DG 53 N2 ? ? C DC 1 C DG 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 13 N3 ? ? ? 1_555 B DA 52 N1 ? ? C DT 2 C DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 13 O4 ? ? ? 1_555 B DA 52 N6 ? ? C DT 2 C DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 14 N1 ? ? ? 1_555 B DA 51 N1 ? ? C DG 3 C DA 40 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog10 hydrog ? ? B DG 14 O6 ? ? ? 1_555 B DA 51 N6 ? ? C DG 3 C DA 40 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? B DG 15 N1 ? ? ? 1_555 B DC 50 N3 ? ? C DG 4 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 15 N2 ? ? ? 1_555 B DC 50 O2 ? ? C DG 4 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 15 O6 ? ? ? 1_555 B DC 50 N4 ? ? C DG 4 C DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 16 N2 ? ? ? 1_555 B DA 49 N7 ? ? C DG 5 C DA 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? B DG 16 N3 ? ? ? 1_555 B DA 49 N6 ? ? C DG 5 C DA 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? B DA 17 N6 ? ? ? 1_555 B DG 48 N3 ? ? C DA 6 C DG 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? B DA 17 N7 ? ? ? 1_555 B DG 48 N2 ? ? C DA 6 C DG 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? B DA 18 N6 ? ? ? 1_555 B DC 47 N3 ? ? C DA 7 C DC 36 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog19 hydrog ? ? B DC 19 N3 ? ? ? 1_555 B DG 46 N1 ? ? C DC 8 C DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 19 N4 ? ? ? 1_555 B DG 46 O6 ? ? C DC 8 C DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 19 O2 ? ? ? 1_555 B DG 46 N2 ? ? C DC 8 C DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 21 N6 ? ? ? 1_555 B DT 45 O2 ? ? C DA 10 C DT 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog23 hydrog ? ? B DA 21 N7 ? ? ? 1_555 B DT 45 N3 ? ? C DA 10 C DT 34 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog24 hydrog ? ? B DG 22 N2 ? ? ? 1_555 B DA 34 N1 ? ? C DG 11 C DA 23 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog25 hydrog ? ? B DG 22 N3 ? ? ? 1_555 B DA 34 N6 ? ? C DG 11 C DA 23 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog26 hydrog ? ? B DG 22 N7 ? ? ? 1_555 B DG 44 N1 ? ? C DG 11 C DG 33 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog27 hydrog ? ? B DG 22 O6 ? ? ? 1_555 B DG 44 N2 ? ? C DG 11 C DG 33 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog28 hydrog ? ? B DG 24 N7 ? ? ? 1_555 B DG 33 N2 ? ? C DG 13 C DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DG 24 O6 ? ? ? 1_555 B DG 33 N1 ? ? C DG 13 C DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 24 N1 ? ? ? 1_555 B DG 43 O6 ? ? C DG 13 C DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 24 N2 ? ? ? 1_555 B DG 43 N7 ? ? C DG 13 C DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 25 N1 ? ? ? 1_555 B DG 32 O6 ? ? C DG 14 C DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DG 25 N2 ? ? ? 1_555 B DG 32 N7 ? ? C DG 14 C DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? B DG 25 N7 ? ? ? 1_555 B DG 42 N2 ? ? C DG 14 C DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? B DG 25 O6 ? ? ? 1_555 B DG 42 N1 ? ? C DG 14 C DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? B DC 26 N3 ? ? ? 1_555 B DG 31 N1 ? ? C DC 15 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DC 26 N4 ? ? ? 1_555 B DG 31 O6 ? ? C DC 15 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DC 26 O2 ? ? ? 1_555 B DG 31 N2 ? ? C DC 15 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DA 30 N6 ? ? ? 1_555 B DT 41 O2 ? ? C DA 19 C DT 30 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? B DA 30 N7 ? ? ? 1_555 B DT 41 N3 ? ? C DA 19 C DT 30 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? B DG 31 N7 ? ? ? 1_555 B DG 40 N1 ? ? C DG 20 C DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? B DG 31 O6 ? ? ? 1_555 B DG 40 N2 ? ? C DG 20 C DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog43 hydrog ? ? B DG 32 N1 ? ? ? 1_555 B DG 38 O6 ? ? C DG 21 C DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? B DG 32 N2 ? ? ? 1_555 B DG 38 N7 ? ? C DG 21 C DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? B DG 33 N7 ? ? ? 1_555 B DG 37 N2 ? ? C DG 22 C DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? B DG 33 O6 ? ? ? 1_555 B DG 37 N1 ? ? C DG 22 C DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? B DG 37 N7 ? ? ? 1_555 B DG 43 N2 ? ? C DG 26 C DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? B DG 37 O6 ? ? ? 1_555 B DG 43 N1 ? ? C DG 26 C DG 32 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? B DG 38 N1 ? ? ? 1_555 B DG 42 O6 ? ? C DG 27 C DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? B DG 38 N2 ? ? ? 1_555 B DG 42 N7 ? ? C DG 27 C DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? B DG 40 N2 ? ? ? 1_555 B DG 42 O6 ? ? C DG 29 C DG 31 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN A 209 ? NAG A 401 ? 1_555 ASN A 207 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG E . ? ASN C 209 ? NAG B 401 ? 1_555 ASN B 207 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 6 ? CYS A 17 ? CYS A 4 ? 1_555 CYS A 15 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 57 ? CYS A 145 ? CYS A 55 ? 1_555 CYS A 143 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 181 ? CYS A 225 ? CYS A 179 ? 1_555 CYS A 223 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 282 ? CYS A 331 ? CYS A 280 ? 1_555 CYS A 329 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 293 ? CYS A 314 ? CYS A 291 ? 1_555 CYS A 312 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS A 315 ? CYS A 318 ? CYS A 313 ? 1_555 CYS A 316 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS C 6 ? CYS C 17 ? CYS B 4 ? 1_555 CYS B 15 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS C 57 ? CYS C 145 ? CYS B 55 ? 1_555 CYS B 143 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS C 181 ? CYS C 225 ? CYS B 179 ? 1_555 CYS B 223 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS C 282 ? CYS C 331 ? CYS B 280 ? 1_555 CYS B 329 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS C 293 ? CYS C 314 ? CYS B 291 ? 1_555 CYS B 312 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS C 315 ? CYS C 318 ? CYS B 313 ? 1_555 CYS B 316 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 320 A . ? LEU 318 A PRO 321 A ? PRO 319 A 1 4.54 2 LEU 320 C . ? LEU 318 B PRO 321 C ? PRO 319 B 1 1.84 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 14 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 4 ? AA8 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA4 7 8 ? anti-parallel AA4 8 9 ? anti-parallel AA4 9 10 ? anti-parallel AA4 10 11 ? anti-parallel AA4 11 12 ? anti-parallel AA4 12 13 ? anti-parallel AA4 13 14 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA8 1 2 ? parallel AA8 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 3 ? SER A 9 ? ASP A 1 SER A 7 AA1 2 GLU A 14 ? THR A 24 ? GLU A 12 THR A 22 AA1 3 GLU C 14 ? THR C 24 ? GLU B 12 THR B 22 AA1 4 ASP C 3 ? SER C 9 ? ASP B 1 SER B 7 AA1 5 ASP A 3 ? SER A 9 ? ASP A 1 SER A 7 AA2 1 TYR A 34 ? PRO A 38 ? TYR A 32 PRO A 36 AA2 2 THR A 167 ? LEU A 173 ? THR A 165 LEU A 171 AA2 3 LEU A 155 ? TYR A 160 ? LEU A 153 TYR A 158 AA3 1 THR A 89 ? THR A 92 ? THR A 87 THR A 90 AA3 2 THR A 134 ? ILE A 137 ? THR A 132 ILE A 135 AA3 3 GLY A 58 ? ARG A 60 ? GLY A 56 ARG A 58 AA3 4 ARG A 150 ? TRP A 152 ? ARG A 148 TRP A 150 AA4 1 CYS A 331 ? TYR A 333 ? CYS A 329 TYR A 331 AA4 2 LEU A 323 ? ARG A 326 ? LEU A 321 ARG A 324 AA4 3 LEU A 275 ? PHE A 279 ? LEU A 273 PHE A 277 AA4 4 TRP A 212 ? PHE A 219 ? TRP A 210 PHE A 217 AA4 5 TYR A 202 ? LEU A 208 ? TYR A 200 LEU A 206 AA4 6 ARG A 194 ? ALA A 198 ? ARG A 192 ALA A 196 AA4 7 SER A 187 ? LYS A 191 ? SER A 185 LYS A 189 AA4 8 SER C 187 ? LYS C 191 ? SER B 185 LYS B 189 AA4 9 ARG C 194 ? ALA C 198 ? ARG B 192 ALA B 196 AA4 10 TYR C 202 ? LEU C 208 ? TYR B 200 LEU B 206 AA4 11 TRP C 212 ? PHE C 219 ? TRP B 210 PHE B 217 AA4 12 LEU C 275 ? PHE C 279 ? LEU B 273 PHE B 277 AA4 13 LEU C 323 ? ARG C 326 ? LEU B 321 ARG B 324 AA4 14 CYS C 331 ? TYR C 333 ? CYS B 329 TYR B 331 AA5 1 THR A 286 ? VAL A 289 ? THR A 284 VAL A 287 AA5 2 GLU A 312 ? CYS A 315 ? GLU A 310 CYS A 313 AA5 3 ILE A 337 ? PRO A 339 ? ILE A 335 PRO A 337 AA6 1 TYR C 34 ? PRO C 38 ? TYR B 32 PRO B 36 AA6 2 THR C 167 ? LEU C 173 ? THR B 165 LEU B 171 AA6 3 LEU C 155 ? TYR C 160 ? LEU B 153 TYR B 158 AA7 1 THR C 89 ? THR C 92 ? THR B 87 THR B 90 AA7 2 THR C 134 ? ILE C 137 ? THR B 132 ILE B 135 AA7 3 GLY C 58 ? ARG C 60 ? GLY B 56 ARG B 58 AA7 4 ARG C 150 ? TRP C 152 ? ARG B 148 TRP B 150 AA8 1 THR C 286 ? VAL C 289 ? THR B 284 VAL B 287 AA8 2 GLU C 312 ? CYS C 315 ? GLU B 310 CYS B 313 AA8 3 ILE C 337 ? PRO C 339 ? ILE B 335 PRO B 337 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLY A 5 ? N GLY A 3 O GLY A 18 ? O GLY A 16 AA1 2 3 N ILE A 21 ? N ILE A 19 O ILE C 23 ? O ILE B 21 AA1 3 4 O GLY C 20 ? O GLY B 18 N ASP C 3 ? N ASP B 1 AA1 4 5 O SER C 4 ? O SER B 2 N VAL A 8 ? N VAL A 6 AA2 1 2 N LYS A 35 ? N LYS A 33 O THR A 167 ? O THR A 165 AA2 2 3 O TRP A 170 ? O TRP A 168 N GLU A 158 ? N GLU A 156 AA3 1 2 N MET A 91 ? N MET A 89 O ILE A 137 ? O ILE A 135 AA3 2 3 O LEU A 136 ? O LEU A 134 N ILE A 59 ? N ILE A 57 AA3 3 4 N GLY A 58 ? N GLY A 56 O ALA A 151 ? O ALA A 149 AA4 1 2 O TRP A 332 ? O TRP A 330 N TYR A 325 ? N TYR A 323 AA4 2 3 O ARG A 324 ? O ARG A 322 N ASP A 278 ? N ASP A 276 AA4 3 4 O MET A 277 ? O MET A 275 N ALA A 217 ? N ALA A 215 AA4 4 5 O LYS A 216 ? O LYS A 214 N GLU A 205 ? N GLU A 203 AA4 5 6 O SER A 206 ? O SER A 204 N ALA A 195 ? N ALA A 193 AA4 6 7 O ARG A 194 ? O ARG A 192 N LYS A 191 ? N LYS A 189 AA4 7 8 N ALA A 188 ? N ALA A 186 O ILE C 190 ? O ILE B 188 AA4 8 9 N ALA C 189 ? N ALA B 187 O VAL C 196 ? O VAL B 194 AA4 9 10 N ALA C 195 ? N ALA B 193 O SER C 206 ? O SER B 204 AA4 10 11 N GLU C 205 ? N GLU B 203 O LYS C 216 ? O LYS B 214 AA4 11 12 N ALA C 217 ? N ALA B 215 O MET C 277 ? O MET B 275 AA4 12 13 N ASP C 278 ? N ASP B 276 O ARG C 324 ? O ARG B 322 AA4 13 14 N TYR C 325 ? N TYR B 323 O TRP C 332 ? O TRP B 330 AA5 1 2 N THR A 286 ? N THR A 284 O TRP A 313 ? O TRP A 311 AA5 2 3 N CYS A 314 ? N CYS A 312 O ARG A 338 ? O ARG A 336 AA6 1 2 N GLN C 37 ? N GLN B 35 O ILE C 169 ? O ILE B 167 AA6 2 3 O TRP C 170 ? O TRP B 168 N GLU C 158 ? N GLU B 156 AA7 1 2 N MET C 91 ? N MET B 89 O ILE C 137 ? O ILE B 135 AA7 2 3 O LEU C 136 ? O LEU B 134 N ILE C 59 ? N ILE B 57 AA7 3 4 N GLY C 58 ? N GLY B 56 O ALA C 151 ? O ALA B 149 AA8 1 2 N THR C 286 ? N THR B 284 O TRP C 313 ? O TRP B 311 AA8 2 3 N CYS C 314 ? N CYS B 312 O ARG C 338 ? O ARG B 336 # _pdbx_entry_details.entry_id 9XHA _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 LEU _pdbx_validate_close_contact.auth_seq_id_1 231 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 252 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 5 ? ? "C1'" C DG 5 ? ? N9 C DG 5 ? ? 110.14 108.30 1.84 0.30 N 2 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.25 108.30 1.95 0.30 N 3 1 "O4'" C DC 15 ? ? "C1'" C DC 15 ? ? N1 C DC 15 ? ? 110.21 108.30 1.91 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 136 ? ? 55.84 -152.68 2 1 VAL A 162 ? ? -123.84 -54.60 3 1 ALA A 187 ? ? -170.70 148.61 4 1 ASN A 255 ? ? -88.92 49.05 5 1 ASP B 136 ? ? 57.40 -143.20 6 1 VAL B 162 ? ? -123.52 -61.95 7 1 ALA B 187 ? ? -170.99 148.67 8 1 ASP B 208 ? ? 71.71 -7.52 9 1 THR B 209 ? ? 179.23 152.56 10 1 ASN B 255 ? ? -90.90 50.14 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9XHA _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9XHA _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.39 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 526951 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Cryo-EM structure of unnatural-base aptamer AptD2 with DENV2 NS1' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9XHA _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9XHA _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9XHA _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -1 ? A ALA 1 2 1 Y 1 A TRP 115 ? A TRP 117 3 1 Y 1 A LYS 116 ? A LYS 118 4 1 Y 1 A THR 117 ? A THR 119 5 1 Y 1 A TRP 118 ? A TRP 120 6 1 Y 1 A GLY 119 ? A GLY 121 7 1 Y 1 A LYS 120 ? A LYS 122 8 1 Y 1 A ALA 121 ? A ALA 123 9 1 Y 1 A LYS 122 ? A LYS 124 10 1 Y 1 A MET 123 ? A MET 125 11 1 Y 1 A LEU 124 ? A LEU 126 12 1 Y 1 A THR 351 ? A THR 353 13 1 Y 1 A ALA 352 ? A ALA 354 14 1 Y 1 A GLU 353 ? A GLU 355 15 1 Y 1 A ASN 354 ? A ASN 356 16 1 Y 1 A LEU 355 ? A LEU 357 17 1 Y 1 A TYR 356 ? A TYR 358 18 1 Y 1 A PHE 357 ? A PHE 359 19 1 Y 1 A GLN 358 ? A GLN 360 20 1 Y 1 A GLY 359 ? A GLY 361 21 1 Y 1 A ALA 360 ? A ALA 362 22 1 Y 1 A ALA 361 ? A ALA 363 23 1 Y 1 A ALA 362 ? A ALA 364 24 1 Y 1 A HIS 363 ? A HIS 365 25 1 Y 1 A HIS 364 ? A HIS 366 26 1 Y 1 A HIS 365 ? A HIS 367 27 1 Y 1 A HIS 366 ? A HIS 368 28 1 Y 1 A HIS 367 ? A HIS 369 29 1 Y 1 A HIS 368 ? A HIS 370 30 1 Y 1 C DG -10 ? B DG 1 31 1 Y 1 C DG -9 ? B DG 2 32 1 Y 1 C DC -8 ? B DC 3 33 1 Y 1 C DT -7 ? B DT 4 34 1 Y 1 C DG -6 ? B DG 5 35 1 Y 1 C DG -5 ? B DG 6 36 1 Y 1 C DT -4 ? B DT 7 37 1 Y 1 C DC -3 ? B DC 8 38 1 Y 1 C DC -2 ? B DC 9 39 1 Y 1 C DG 44 ? B DG 55 40 1 Y 1 C DG 45 ? B DG 56 41 1 Y 1 C DA 46 ? B DA 57 42 1 Y 1 C DC 47 ? B DC 58 43 1 Y 1 C DC 48 ? B DC 59 44 1 Y 1 C DA 49 ? B DA 60 45 1 Y 1 C DG 50 ? B DG 61 46 1 Y 1 C DC 51 ? B DC 62 47 1 Y 1 C DC 52 ? B DC 63 48 1 Y 1 C DC 53 ? B DC 64 49 1 Y 1 C DG 54 ? B DG 65 50 1 Y 1 C DC 55 ? B DC 66 51 1 Y 1 C DG 56 ? B DG 67 52 1 Y 1 C DA 57 ? B DA 68 53 1 Y 1 C DA 58 ? B DA 69 54 1 Y 1 C DG 59 ? B DG 70 55 1 Y 1 C DC 60 ? B DC 71 56 1 Y 1 C DG 61 ? B DG 72 57 1 Y 1 B ALA -1 ? C ALA 1 58 1 Y 1 B TRP 115 ? C TRP 117 59 1 Y 1 B LYS 116 ? C LYS 118 60 1 Y 1 B THR 117 ? C THR 119 61 1 Y 1 B TRP 118 ? C TRP 120 62 1 Y 1 B GLY 119 ? C GLY 121 63 1 Y 1 B LYS 120 ? C LYS 122 64 1 Y 1 B ALA 121 ? C ALA 123 65 1 Y 1 B LYS 122 ? C LYS 124 66 1 Y 1 B MET 123 ? C MET 125 67 1 Y 1 B LEU 124 ? C LEU 126 68 1 Y 1 B LYS 341 ? C LYS 343 69 1 Y 1 B GLU 342 ? C GLU 344 70 1 Y 1 B GLU 343 ? C GLU 345 71 1 Y 1 B ASN 344 ? C ASN 346 72 1 Y 1 B LEU 345 ? C LEU 347 73 1 Y 1 B VAL 346 ? C VAL 348 74 1 Y 1 B ASN 347 ? C ASN 349 75 1 Y 1 B SER 348 ? C SER 350 76 1 Y 1 B LEU 349 ? C LEU 351 77 1 Y 1 B VAL 350 ? C VAL 352 78 1 Y 1 B THR 351 ? C THR 353 79 1 Y 1 B ALA 352 ? C ALA 354 80 1 Y 1 B GLU 353 ? C GLU 355 81 1 Y 1 B ASN 354 ? C ASN 356 82 1 Y 1 B LEU 355 ? C LEU 357 83 1 Y 1 B TYR 356 ? C TYR 358 84 1 Y 1 B PHE 357 ? C PHE 359 85 1 Y 1 B GLN 358 ? C GLN 360 86 1 Y 1 B GLY 359 ? C GLY 361 87 1 Y 1 B ALA 360 ? C ALA 362 88 1 Y 1 B ALA 361 ? C ALA 363 89 1 Y 1 B ALA 362 ? C ALA 364 90 1 Y 1 B HIS 363 ? C HIS 365 91 1 Y 1 B HIS 364 ? C HIS 366 92 1 Y 1 B HIS 365 ? C HIS 367 93 1 Y 1 B HIS 366 ? C HIS 368 94 1 Y 1 B HIS 367 ? C HIS 369 95 1 Y 1 B HIS 368 ? C HIS 370 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 91N "C1'" C N R 1 91N C10 C Y N 2 91N C11 C Y N 3 91N C12 C Y N 4 91N C2 C Y N 5 91N "C2'" C N N 6 91N "C3'" C N S 7 91N C3A C Y N 8 91N "C4'" C N R 9 91N C5 C Y N 10 91N "C5'" C N N 11 91N C6 C Y N 12 91N C7 C Y N 13 91N C7A C Y N 14 91N C9 C Y N 15 91N N1 N Y N 16 91N N3 N Y N 17 91N N4 N Y N 18 91N "O3'" O N N 19 91N "O4'" O N N 20 91N "O5'" O N N 21 91N OP2 O N N 22 91N OP1 O N N 23 91N P P N N 24 91N S8 S Y N 25 91N H091 H N N 26 91N H161 H N N 27 91N H171 H N N 28 91N H181 H N N 29 91N H111 H N N 30 91N H241 H N N 31 91N H242 H N N 32 91N H251 H N N 33 91N H071 H N N 34 91N H211 H N N 35 91N H061 H N N 36 91N H062 H N N 37 91N H201 H N N 38 91N H1 H N N 39 91N H2 H N N 40 91N OP3 O N N 41 91N H5 H N N 42 A1MCL C1 C Y N 43 A1MCL C2 C Y N 44 A1MCL C3 C N N 45 A1MCL C4 C N N 46 A1MCL C5 C N N 47 A1MCL C8 C Y N 48 A1MCL C C Y N 49 A1MCL O O N N 50 A1MCL C0 C N N 51 A1MCL "C1'" C N R 52 A1MCL "C2'" C N N 53 A1MCL "C3'" C N S 54 A1MCL "C4'" C N R 55 A1MCL "C5'" C N N 56 A1MCL N1 N Y N 57 A1MCL OP1 O N N 58 A1MCL OP2 O N N 59 A1MCL "O3'" O N N 60 A1MCL "O4'" O N N 61 A1MCL "O5'" O N N 62 A1MCL P P N N 63 A1MCL H1 H N N 64 A1MCL H2 H N N 65 A1MCL H3 H N N 66 A1MCL H4 H N N 67 A1MCL H5 H N N 68 A1MCL H6 H N N 69 A1MCL H7 H N N 70 A1MCL H8 H N N 71 A1MCL H9 H N N 72 A1MCL H10 H N N 73 A1MCL H11 H N N 74 A1MCL H12 H N N 75 A1MCL H13 H N N 76 A1MCL H15 H N N 77 A1MCL H16 H N N 78 A1MCL OP3 O N N 79 A1MCL H14 H N N 80 ALA N N N N 81 ALA CA C N S 82 ALA C C N N 83 ALA O O N N 84 ALA CB C N N 85 ALA OXT O N N 86 ALA H H N N 87 ALA H2 H N N 88 ALA HA H N N 89 ALA HB1 H N N 90 ALA HB2 H N N 91 ALA HB3 H N N 92 ALA HXT H N N 93 ARG N N N N 94 ARG CA C N S 95 ARG C C N N 96 ARG O O N N 97 ARG CB C N N 98 ARG CG C N N 99 ARG CD C N N 100 ARG NE N N N 101 ARG CZ C N N 102 ARG NH1 N N N 103 ARG NH2 N N N 104 ARG OXT O N N 105 ARG H H N N 106 ARG H2 H N N 107 ARG HA H N N 108 ARG HB2 H N N 109 ARG HB3 H N N 110 ARG HG2 H N N 111 ARG HG3 H N N 112 ARG HD2 H N N 113 ARG HD3 H N N 114 ARG HE H N N 115 ARG HH11 H N N 116 ARG HH12 H N N 117 ARG HH21 H N N 118 ARG HH22 H N N 119 ARG HXT H N N 120 ASN N N N N 121 ASN CA C N S 122 ASN C C N N 123 ASN O O N N 124 ASN CB C N N 125 ASN CG C N N 126 ASN OD1 O N N 127 ASN ND2 N N N 128 ASN OXT O N N 129 ASN H H N N 130 ASN H2 H N N 131 ASN HA H N N 132 ASN HB2 H N N 133 ASN HB3 H N N 134 ASN HD21 H N N 135 ASN HD22 H N N 136 ASN HXT H N N 137 ASP N N N N 138 ASP CA C N S 139 ASP C C N N 140 ASP O O N N 141 ASP CB C N N 142 ASP CG C N N 143 ASP OD1 O N N 144 ASP OD2 O N N 145 ASP OXT O N N 146 ASP H H N N 147 ASP H2 H N N 148 ASP HA H N N 149 ASP HB2 H N N 150 ASP HB3 H N N 151 ASP HD2 H N N 152 ASP HXT H N N 153 CYS N N N N 154 CYS CA C N R 155 CYS C C N N 156 CYS O O N N 157 CYS CB C N N 158 CYS SG S N N 159 CYS OXT O N N 160 CYS H H N N 161 CYS H2 H N N 162 CYS HA H N N 163 CYS HB2 H N N 164 CYS HB3 H N N 165 CYS HG H N N 166 CYS HXT H N N 167 DA OP3 O N N 168 DA P P N N 169 DA OP1 O N N 170 DA OP2 O N N 171 DA "O5'" O N N 172 DA "C5'" C N N 173 DA "C4'" C N R 174 DA "O4'" O N N 175 DA "C3'" C N S 176 DA "O3'" O N N 177 DA "C2'" C N N 178 DA "C1'" C N R 179 DA N9 N Y N 180 DA C8 C Y N 181 DA N7 N Y N 182 DA C5 C Y N 183 DA C6 C Y N 184 DA N6 N N N 185 DA N1 N Y N 186 DA C2 C Y N 187 DA N3 N Y N 188 DA C4 C Y N 189 DA HOP3 H N N 190 DA HOP2 H N N 191 DA "H5'" H N N 192 DA "H5''" H N N 193 DA "H4'" H N N 194 DA "H3'" H N N 195 DA "HO3'" H N N 196 DA "H2'" H N N 197 DA "H2''" H N N 198 DA "H1'" H N N 199 DA H8 H N N 200 DA H61 H N N 201 DA H62 H N N 202 DA H2 H N N 203 DC OP3 O N N 204 DC P P N N 205 DC OP1 O N N 206 DC OP2 O N N 207 DC "O5'" O N N 208 DC "C5'" C N N 209 DC "C4'" C N R 210 DC "O4'" O N N 211 DC "C3'" C N S 212 DC "O3'" O N N 213 DC "C2'" C N N 214 DC "C1'" C N R 215 DC N1 N N N 216 DC C2 C N N 217 DC O2 O N N 218 DC N3 N N N 219 DC C4 C N N 220 DC N4 N N N 221 DC C5 C N N 222 DC C6 C N N 223 DC HOP3 H N N 224 DC HOP2 H N N 225 DC "H5'" H N N 226 DC "H5''" H N N 227 DC "H4'" H N N 228 DC "H3'" H N N 229 DC "HO3'" H N N 230 DC "H2'" H N N 231 DC "H2''" H N N 232 DC "H1'" H N N 233 DC H41 H N N 234 DC H42 H N N 235 DC H5 H N N 236 DC H6 H N N 237 DG OP3 O N N 238 DG P P N N 239 DG OP1 O N N 240 DG OP2 O N N 241 DG "O5'" O N N 242 DG "C5'" C N N 243 DG "C4'" C N R 244 DG "O4'" O N N 245 DG "C3'" C N S 246 DG "O3'" O N N 247 DG "C2'" C N N 248 DG "C1'" C N R 249 DG N9 N Y N 250 DG C8 C Y N 251 DG N7 N Y N 252 DG C5 C Y N 253 DG C6 C N N 254 DG O6 O N N 255 DG N1 N N N 256 DG C2 C N N 257 DG N2 N N N 258 DG N3 N N N 259 DG C4 C Y N 260 DG HOP3 H N N 261 DG HOP2 H N N 262 DG "H5'" H N N 263 DG "H5''" H N N 264 DG "H4'" H N N 265 DG "H3'" H N N 266 DG "HO3'" H N N 267 DG "H2'" H N N 268 DG "H2''" H N N 269 DG "H1'" H N N 270 DG H8 H N N 271 DG H1 H N N 272 DG H21 H N N 273 DG H22 H N N 274 DT OP3 O N N 275 DT P P N N 276 DT OP1 O N N 277 DT OP2 O N N 278 DT "O5'" O N N 279 DT "C5'" C N N 280 DT "C4'" C N R 281 DT "O4'" O N N 282 DT "C3'" C N S 283 DT "O3'" O N N 284 DT "C2'" C N N 285 DT "C1'" C N R 286 DT N1 N N N 287 DT C2 C N N 288 DT O2 O N N 289 DT N3 N N N 290 DT C4 C N N 291 DT O4 O N N 292 DT C5 C N N 293 DT C7 C N N 294 DT C6 C N N 295 DT HOP3 H N N 296 DT HOP2 H N N 297 DT "H5'" H N N 298 DT "H5''" H N N 299 DT "H4'" H N N 300 DT "H3'" H N N 301 DT "HO3'" H N N 302 DT "H2'" H N N 303 DT "H2''" H N N 304 DT "H1'" H N N 305 DT H3 H N N 306 DT H71 H N N 307 DT H72 H N N 308 DT H73 H N N 309 DT H6 H N N 310 GLN N N N N 311 GLN CA C N S 312 GLN C C N N 313 GLN O O N N 314 GLN CB C N N 315 GLN CG C N N 316 GLN CD C N N 317 GLN OE1 O N N 318 GLN NE2 N N N 319 GLN OXT O N N 320 GLN H H N N 321 GLN H2 H N N 322 GLN HA H N N 323 GLN HB2 H N N 324 GLN HB3 H N N 325 GLN HG2 H N N 326 GLN HG3 H N N 327 GLN HE21 H N N 328 GLN HE22 H N N 329 GLN HXT H N N 330 GLU N N N N 331 GLU CA C N S 332 GLU C C N N 333 GLU O O N N 334 GLU CB C N N 335 GLU CG C N N 336 GLU CD C N N 337 GLU OE1 O N N 338 GLU OE2 O N N 339 GLU OXT O N N 340 GLU H H N N 341 GLU H2 H N N 342 GLU HA H N N 343 GLU HB2 H N N 344 GLU HB3 H N N 345 GLU HG2 H N N 346 GLU HG3 H N N 347 GLU HE2 H N N 348 GLU HXT H N N 349 GLY N N N N 350 GLY CA C N N 351 GLY C C N N 352 GLY O O N N 353 GLY OXT O N N 354 GLY H H N N 355 GLY H2 H N N 356 GLY HA2 H N N 357 GLY HA3 H N N 358 GLY HXT H N N 359 HIS N N N N 360 HIS CA C N S 361 HIS C C N N 362 HIS O O N N 363 HIS CB C N N 364 HIS CG C Y N 365 HIS ND1 N Y N 366 HIS CD2 C Y N 367 HIS CE1 C Y N 368 HIS NE2 N Y N 369 HIS OXT O N N 370 HIS H H N N 371 HIS H2 H N N 372 HIS HA H N N 373 HIS HB2 H N N 374 HIS HB3 H N N 375 HIS HD1 H N N 376 HIS HD2 H N N 377 HIS HE1 H N N 378 HIS HE2 H N N 379 HIS HXT H N N 380 ILE N N N N 381 ILE CA C N S 382 ILE C C N N 383 ILE O O N N 384 ILE CB C N S 385 ILE CG1 C N N 386 ILE CG2 C N N 387 ILE CD1 C N N 388 ILE OXT O N N 389 ILE H H N N 390 ILE H2 H N N 391 ILE HA H N N 392 ILE HB H N N 393 ILE HG12 H N N 394 ILE HG13 H N N 395 ILE HG21 H N N 396 ILE HG22 H N N 397 ILE HG23 H N N 398 ILE HD11 H N N 399 ILE HD12 H N N 400 ILE HD13 H N N 401 ILE HXT H N N 402 LEU N N N N 403 LEU CA C N S 404 LEU C C N N 405 LEU O O N N 406 LEU CB C N N 407 LEU CG C N N 408 LEU CD1 C N N 409 LEU CD2 C N N 410 LEU OXT O N N 411 LEU H H N N 412 LEU H2 H N N 413 LEU HA H N N 414 LEU HB2 H N N 415 LEU HB3 H N N 416 LEU HG H N N 417 LEU HD11 H N N 418 LEU HD12 H N N 419 LEU HD13 H N N 420 LEU HD21 H N N 421 LEU HD22 H N N 422 LEU HD23 H N N 423 LEU HXT H N N 424 LYS N N N N 425 LYS CA C N S 426 LYS C C N N 427 LYS O O N N 428 LYS CB C N N 429 LYS CG C N N 430 LYS CD C N N 431 LYS CE C N N 432 LYS NZ N N N 433 LYS OXT O N N 434 LYS H H N N 435 LYS H2 H N N 436 LYS HA H N N 437 LYS HB2 H N N 438 LYS HB3 H N N 439 LYS HG2 H N N 440 LYS HG3 H N N 441 LYS HD2 H N N 442 LYS HD3 H N N 443 LYS HE2 H N N 444 LYS HE3 H N N 445 LYS HZ1 H N N 446 LYS HZ2 H N N 447 LYS HZ3 H N N 448 LYS HXT H N N 449 MET N N N N 450 MET CA C N S 451 MET C C N N 452 MET O O N N 453 MET CB C N N 454 MET CG C N N 455 MET SD S N N 456 MET CE C N N 457 MET OXT O N N 458 MET H H N N 459 MET H2 H N N 460 MET HA H N N 461 MET HB2 H N N 462 MET HB3 H N N 463 MET HG2 H N N 464 MET HG3 H N N 465 MET HE1 H N N 466 MET HE2 H N N 467 MET HE3 H N N 468 MET HXT H N N 469 NAG C1 C N R 470 NAG C2 C N R 471 NAG C3 C N R 472 NAG C4 C N S 473 NAG C5 C N R 474 NAG C6 C N N 475 NAG C7 C N N 476 NAG C8 C N N 477 NAG N2 N N N 478 NAG O1 O N N 479 NAG O3 O N N 480 NAG O4 O N N 481 NAG O5 O N N 482 NAG O6 O N N 483 NAG O7 O N N 484 NAG H1 H N N 485 NAG H2 H N N 486 NAG H3 H N N 487 NAG H4 H N N 488 NAG H5 H N N 489 NAG H61 H N N 490 NAG H62 H N N 491 NAG H81 H N N 492 NAG H82 H N N 493 NAG H83 H N N 494 NAG HN2 H N N 495 NAG HO1 H N N 496 NAG HO3 H N N 497 NAG HO4 H N N 498 NAG HO6 H N N 499 PHE N N N N 500 PHE CA C N S 501 PHE C C N N 502 PHE O O N N 503 PHE CB C N N 504 PHE CG C Y N 505 PHE CD1 C Y N 506 PHE CD2 C Y N 507 PHE CE1 C Y N 508 PHE CE2 C Y N 509 PHE CZ C Y N 510 PHE OXT O N N 511 PHE H H N N 512 PHE H2 H N N 513 PHE HA H N N 514 PHE HB2 H N N 515 PHE HB3 H N N 516 PHE HD1 H N N 517 PHE HD2 H N N 518 PHE HE1 H N N 519 PHE HE2 H N N 520 PHE HZ H N N 521 PHE HXT H N N 522 PRO N N N N 523 PRO CA C N S 524 PRO C C N N 525 PRO O O N N 526 PRO CB C N N 527 PRO CG C N N 528 PRO CD C N N 529 PRO OXT O N N 530 PRO H H N N 531 PRO HA H N N 532 PRO HB2 H N N 533 PRO HB3 H N N 534 PRO HG2 H N N 535 PRO HG3 H N N 536 PRO HD2 H N N 537 PRO HD3 H N N 538 PRO HXT H N N 539 SER N N N N 540 SER CA C N S 541 SER C C N N 542 SER O O N N 543 SER CB C N N 544 SER OG O N N 545 SER OXT O N N 546 SER H H N N 547 SER H2 H N N 548 SER HA H N N 549 SER HB2 H N N 550 SER HB3 H N N 551 SER HG H N N 552 SER HXT H N N 553 THR N N N N 554 THR CA C N S 555 THR C C N N 556 THR O O N N 557 THR CB C N R 558 THR OG1 O N N 559 THR CG2 C N N 560 THR OXT O N N 561 THR H H N N 562 THR H2 H N N 563 THR HA H N N 564 THR HB H N N 565 THR HG1 H N N 566 THR HG21 H N N 567 THR HG22 H N N 568 THR HG23 H N N 569 THR HXT H N N 570 TRP N N N N 571 TRP CA C N S 572 TRP C C N N 573 TRP O O N N 574 TRP CB C N N 575 TRP CG C Y N 576 TRP CD1 C Y N 577 TRP CD2 C Y N 578 TRP NE1 N Y N 579 TRP CE2 C Y N 580 TRP CE3 C Y N 581 TRP CZ2 C Y N 582 TRP CZ3 C Y N 583 TRP CH2 C Y N 584 TRP OXT O N N 585 TRP H H N N 586 TRP H2 H N N 587 TRP HA H N N 588 TRP HB2 H N N 589 TRP HB3 H N N 590 TRP HD1 H N N 591 TRP HE1 H N N 592 TRP HE3 H N N 593 TRP HZ2 H N N 594 TRP HZ3 H N N 595 TRP HH2 H N N 596 TRP HXT H N N 597 TYR N N N N 598 TYR CA C N S 599 TYR C C N N 600 TYR O O N N 601 TYR CB C N N 602 TYR CG C Y N 603 TYR CD1 C Y N 604 TYR CD2 C Y N 605 TYR CE1 C Y N 606 TYR CE2 C Y N 607 TYR CZ C Y N 608 TYR OH O N N 609 TYR OXT O N N 610 TYR H H N N 611 TYR H2 H N N 612 TYR HA H N N 613 TYR HB2 H N N 614 TYR HB3 H N N 615 TYR HD1 H N N 616 TYR HD2 H N N 617 TYR HE1 H N N 618 TYR HE2 H N N 619 TYR HH H N N 620 TYR HXT H N N 621 VAL N N N N 622 VAL CA C N S 623 VAL C C N N 624 VAL O O N N 625 VAL CB C N N 626 VAL CG1 C N N 627 VAL CG2 C N N 628 VAL OXT O N N 629 VAL H H N N 630 VAL H2 H N N 631 VAL HA H N N 632 VAL HB H N N 633 VAL HG11 H N N 634 VAL HG12 H N N 635 VAL HG13 H N N 636 VAL HG21 H N N 637 VAL HG22 H N N 638 VAL HG23 H N N 639 VAL HXT H N N 640 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 91N C5 C6 doub Y N 1 91N C5 N4 sing Y N 2 91N C6 C7 sing Y N 3 91N S8 C12 sing Y N 4 91N S8 C9 sing Y N 5 91N N4 C3A doub Y N 6 91N C12 C11 doub Y N 7 91N C7 C9 sing N N 8 91N C7 C7A doub Y N 9 91N C9 C10 doub Y N 10 91N C3A C7A sing Y N 11 91N C3A N3 sing Y N 12 91N C11 C10 sing Y N 13 91N C7A N1 sing Y N 14 91N "C2'" "C1'" sing N N 15 91N "C2'" "C3'" sing N N 16 91N N3 "C1'" sing N N 17 91N N3 C2 sing Y N 18 91N N1 C2 doub Y N 19 91N "C1'" "O4'" sing N N 20 91N "C3'" "O3'" sing N N 21 91N "C3'" "C4'" sing N N 22 91N "O4'" "C4'" sing N N 23 91N "C4'" "C5'" sing N N 24 91N "C5'" "O5'" sing N N 25 91N "O5'" P sing N N 26 91N P OP1 doub N N 27 91N P OP2 sing N N 28 91N "C1'" H091 sing N N 29 91N C10 H161 sing N N 30 91N C11 H171 sing N N 31 91N C12 H181 sing N N 32 91N C2 H111 sing N N 33 91N "C2'" H241 sing N N 34 91N "C2'" H242 sing N N 35 91N "C3'" H251 sing N N 36 91N "C4'" H071 sing N N 37 91N C5 H211 sing N N 38 91N "C5'" H061 sing N N 39 91N "C5'" H062 sing N N 40 91N C6 H201 sing N N 41 91N "O3'" H1 sing N N 42 91N OP2 H2 sing N N 43 91N P OP3 sing N N 44 91N OP3 H5 sing N N 45 A1MCL O C0 doub N N 46 A1MCL C0 C sing N N 47 A1MCL C C1 doub Y N 48 A1MCL C N1 sing Y N 49 A1MCL C1 C2 sing Y N 50 A1MCL "C1'" N1 sing N N 51 A1MCL "C1'" "O4'" sing N N 52 A1MCL "C1'" "C2'" sing N N 53 A1MCL "O3'" "C3'" sing N N 54 A1MCL N1 C8 sing Y N 55 A1MCL "O4'" "C4'" sing N N 56 A1MCL "C2'" "C3'" sing N N 57 A1MCL C2 C8 doub Y N 58 A1MCL C2 C3 sing N N 59 A1MCL "C3'" "C4'" sing N N 60 A1MCL "C4'" "C5'" sing N N 61 A1MCL C3 C4 trip N N 62 A1MCL C4 C5 sing N N 63 A1MCL "C5'" "O5'" sing N N 64 A1MCL "O5'" P sing N N 65 A1MCL OP2 P sing N N 66 A1MCL P OP1 doub N N 67 A1MCL C1 H1 sing N N 68 A1MCL C5 H2 sing N N 69 A1MCL C5 H3 sing N N 70 A1MCL C5 H4 sing N N 71 A1MCL C8 H5 sing N N 72 A1MCL C0 H6 sing N N 73 A1MCL "C1'" H7 sing N N 74 A1MCL "C2'" H8 sing N N 75 A1MCL "C2'" H9 sing N N 76 A1MCL "C3'" H10 sing N N 77 A1MCL "C4'" H11 sing N N 78 A1MCL "C5'" H12 sing N N 79 A1MCL "C5'" H13 sing N N 80 A1MCL OP2 H15 sing N N 81 A1MCL "O3'" H16 sing N N 82 A1MCL P OP3 sing N N 83 A1MCL OP3 H14 sing N N 84 ALA N CA sing N N 85 ALA N H sing N N 86 ALA N H2 sing N N 87 ALA CA C sing N N 88 ALA CA CB sing N N 89 ALA CA HA sing N N 90 ALA C O doub N N 91 ALA C OXT sing N N 92 ALA CB HB1 sing N N 93 ALA CB HB2 sing N N 94 ALA CB HB3 sing N N 95 ALA OXT HXT sing N N 96 ARG N CA sing N N 97 ARG N H sing N N 98 ARG N H2 sing N N 99 ARG CA C sing N N 100 ARG CA CB sing N N 101 ARG CA HA sing N N 102 ARG C O doub N N 103 ARG C OXT sing N N 104 ARG CB CG sing N N 105 ARG CB HB2 sing N N 106 ARG CB HB3 sing N N 107 ARG CG CD sing N N 108 ARG CG HG2 sing N N 109 ARG CG HG3 sing N N 110 ARG CD NE sing N N 111 ARG CD HD2 sing N N 112 ARG CD HD3 sing N N 113 ARG NE CZ sing N N 114 ARG NE HE sing N N 115 ARG CZ NH1 sing N N 116 ARG CZ NH2 doub N N 117 ARG NH1 HH11 sing N N 118 ARG NH1 HH12 sing N N 119 ARG NH2 HH21 sing N N 120 ARG NH2 HH22 sing N N 121 ARG OXT HXT sing N N 122 ASN N CA sing N N 123 ASN N H sing N N 124 ASN N H2 sing N N 125 ASN CA C sing N N 126 ASN CA CB sing N N 127 ASN CA HA sing N N 128 ASN C O doub N N 129 ASN C OXT sing N N 130 ASN CB CG sing N N 131 ASN CB HB2 sing N N 132 ASN CB HB3 sing N N 133 ASN CG OD1 doub N N 134 ASN CG ND2 sing N N 135 ASN ND2 HD21 sing N N 136 ASN ND2 HD22 sing N N 137 ASN OXT HXT sing N N 138 ASP N CA sing N N 139 ASP N H sing N N 140 ASP N H2 sing N N 141 ASP CA C sing N N 142 ASP CA CB sing N N 143 ASP CA HA sing N N 144 ASP C O doub N N 145 ASP C OXT sing N N 146 ASP CB CG sing N N 147 ASP CB HB2 sing N N 148 ASP CB HB3 sing N N 149 ASP CG OD1 doub N N 150 ASP CG OD2 sing N N 151 ASP OD2 HD2 sing N N 152 ASP OXT HXT sing N N 153 CYS N CA sing N N 154 CYS N H sing N N 155 CYS N H2 sing N N 156 CYS CA C sing N N 157 CYS CA CB sing N N 158 CYS CA HA sing N N 159 CYS C O doub N N 160 CYS C OXT sing N N 161 CYS CB SG sing N N 162 CYS CB HB2 sing N N 163 CYS CB HB3 sing N N 164 CYS SG HG sing N N 165 CYS OXT HXT sing N N 166 DA OP3 P sing N N 167 DA OP3 HOP3 sing N N 168 DA P OP1 doub N N 169 DA P OP2 sing N N 170 DA P "O5'" sing N N 171 DA OP2 HOP2 sing N N 172 DA "O5'" "C5'" sing N N 173 DA "C5'" "C4'" sing N N 174 DA "C5'" "H5'" sing N N 175 DA "C5'" "H5''" sing N N 176 DA "C4'" "O4'" sing N N 177 DA "C4'" "C3'" sing N N 178 DA "C4'" "H4'" sing N N 179 DA "O4'" "C1'" sing N N 180 DA "C3'" "O3'" sing N N 181 DA "C3'" "C2'" sing N N 182 DA "C3'" "H3'" sing N N 183 DA "O3'" "HO3'" sing N N 184 DA "C2'" "C1'" sing N N 185 DA "C2'" "H2'" sing N N 186 DA "C2'" "H2''" sing N N 187 DA "C1'" N9 sing N N 188 DA "C1'" "H1'" sing N N 189 DA N9 C8 sing Y N 190 DA N9 C4 sing Y N 191 DA C8 N7 doub Y N 192 DA C8 H8 sing N N 193 DA N7 C5 sing Y N 194 DA C5 C6 sing Y N 195 DA C5 C4 doub Y N 196 DA C6 N6 sing N N 197 DA C6 N1 doub Y N 198 DA N6 H61 sing N N 199 DA N6 H62 sing N N 200 DA N1 C2 sing Y N 201 DA C2 N3 doub Y N 202 DA C2 H2 sing N N 203 DA N3 C4 sing Y N 204 DC OP3 P sing N N 205 DC OP3 HOP3 sing N N 206 DC P OP1 doub N N 207 DC P OP2 sing N N 208 DC P "O5'" sing N N 209 DC OP2 HOP2 sing N N 210 DC "O5'" "C5'" sing N N 211 DC "C5'" "C4'" sing N N 212 DC "C5'" "H5'" sing N N 213 DC "C5'" "H5''" sing N N 214 DC "C4'" "O4'" sing N N 215 DC "C4'" "C3'" sing N N 216 DC "C4'" "H4'" sing N N 217 DC "O4'" "C1'" sing N N 218 DC "C3'" "O3'" sing N N 219 DC "C3'" "C2'" sing N N 220 DC "C3'" "H3'" sing N N 221 DC "O3'" "HO3'" sing N N 222 DC "C2'" "C1'" sing N N 223 DC "C2'" "H2'" sing N N 224 DC "C2'" "H2''" sing N N 225 DC "C1'" N1 sing N N 226 DC "C1'" "H1'" sing N N 227 DC N1 C2 sing N N 228 DC N1 C6 sing N N 229 DC C2 O2 doub N N 230 DC C2 N3 sing N N 231 DC N3 C4 doub N N 232 DC C4 N4 sing N N 233 DC C4 C5 sing N N 234 DC N4 H41 sing N N 235 DC N4 H42 sing N N 236 DC C5 C6 doub N N 237 DC C5 H5 sing N N 238 DC C6 H6 sing N N 239 DG OP3 P sing N N 240 DG OP3 HOP3 sing N N 241 DG P OP1 doub N N 242 DG P OP2 sing N N 243 DG P "O5'" sing N N 244 DG OP2 HOP2 sing N N 245 DG "O5'" "C5'" sing N N 246 DG "C5'" "C4'" sing N N 247 DG "C5'" "H5'" sing N N 248 DG "C5'" "H5''" sing N N 249 DG "C4'" "O4'" sing N N 250 DG "C4'" "C3'" sing N N 251 DG "C4'" "H4'" sing N N 252 DG "O4'" "C1'" sing N N 253 DG "C3'" "O3'" sing N N 254 DG "C3'" "C2'" sing N N 255 DG "C3'" "H3'" sing N N 256 DG "O3'" "HO3'" sing N N 257 DG "C2'" "C1'" sing N N 258 DG "C2'" "H2'" sing N N 259 DG "C2'" "H2''" sing N N 260 DG "C1'" N9 sing N N 261 DG "C1'" "H1'" sing N N 262 DG N9 C8 sing Y N 263 DG N9 C4 sing Y N 264 DG C8 N7 doub Y N 265 DG C8 H8 sing N N 266 DG N7 C5 sing Y N 267 DG C5 C6 sing N N 268 DG C5 C4 doub Y N 269 DG C6 O6 doub N N 270 DG C6 N1 sing N N 271 DG N1 C2 sing N N 272 DG N1 H1 sing N N 273 DG C2 N2 sing N N 274 DG C2 N3 doub N N 275 DG N2 H21 sing N N 276 DG N2 H22 sing N N 277 DG N3 C4 sing N N 278 DT OP3 P sing N N 279 DT OP3 HOP3 sing N N 280 DT P OP1 doub N N 281 DT P OP2 sing N N 282 DT P "O5'" sing N N 283 DT OP2 HOP2 sing N N 284 DT "O5'" "C5'" sing N N 285 DT "C5'" "C4'" sing N N 286 DT "C5'" "H5'" sing N N 287 DT "C5'" "H5''" sing N N 288 DT "C4'" "O4'" sing N N 289 DT "C4'" "C3'" sing N N 290 DT "C4'" "H4'" sing N N 291 DT "O4'" "C1'" sing N N 292 DT "C3'" "O3'" sing N N 293 DT "C3'" "C2'" sing N N 294 DT "C3'" "H3'" sing N N 295 DT "O3'" "HO3'" sing N N 296 DT "C2'" "C1'" sing N N 297 DT "C2'" "H2'" sing N N 298 DT "C2'" "H2''" sing N N 299 DT "C1'" N1 sing N N 300 DT "C1'" "H1'" sing N N 301 DT N1 C2 sing N N 302 DT N1 C6 sing N N 303 DT C2 O2 doub N N 304 DT C2 N3 sing N N 305 DT N3 C4 sing N N 306 DT N3 H3 sing N N 307 DT C4 O4 doub N N 308 DT C4 C5 sing N N 309 DT C5 C7 sing N N 310 DT C5 C6 doub N N 311 DT C7 H71 sing N N 312 DT C7 H72 sing N N 313 DT C7 H73 sing N N 314 DT C6 H6 sing N N 315 GLN N CA sing N N 316 GLN N H sing N N 317 GLN N H2 sing N N 318 GLN CA C sing N N 319 GLN CA CB sing N N 320 GLN CA HA sing N N 321 GLN C O doub N N 322 GLN C OXT sing N N 323 GLN CB CG sing N N 324 GLN CB HB2 sing N N 325 GLN CB HB3 sing N N 326 GLN CG CD sing N N 327 GLN CG HG2 sing N N 328 GLN CG HG3 sing N N 329 GLN CD OE1 doub N N 330 GLN CD NE2 sing N N 331 GLN NE2 HE21 sing N N 332 GLN NE2 HE22 sing N N 333 GLN OXT HXT sing N N 334 GLU N CA sing N N 335 GLU N H sing N N 336 GLU N H2 sing N N 337 GLU CA C sing N N 338 GLU CA CB sing N N 339 GLU CA HA sing N N 340 GLU C O doub N N 341 GLU C OXT sing N N 342 GLU CB CG sing N N 343 GLU CB HB2 sing N N 344 GLU CB HB3 sing N N 345 GLU CG CD sing N N 346 GLU CG HG2 sing N N 347 GLU CG HG3 sing N N 348 GLU CD OE1 doub N N 349 GLU CD OE2 sing N N 350 GLU OE2 HE2 sing N N 351 GLU OXT HXT sing N N 352 GLY N CA sing N N 353 GLY N H sing N N 354 GLY N H2 sing N N 355 GLY CA C sing N N 356 GLY CA HA2 sing N N 357 GLY CA HA3 sing N N 358 GLY C O doub N N 359 GLY C OXT sing N N 360 GLY OXT HXT sing N N 361 HIS N CA sing N N 362 HIS N H sing N N 363 HIS N H2 sing N N 364 HIS CA C sing N N 365 HIS CA CB sing N N 366 HIS CA HA sing N N 367 HIS C O doub N N 368 HIS C OXT sing N N 369 HIS CB CG sing N N 370 HIS CB HB2 sing N N 371 HIS CB HB3 sing N N 372 HIS CG ND1 sing Y N 373 HIS CG CD2 doub Y N 374 HIS ND1 CE1 doub Y N 375 HIS ND1 HD1 sing N N 376 HIS CD2 NE2 sing Y N 377 HIS CD2 HD2 sing N N 378 HIS CE1 NE2 sing Y N 379 HIS CE1 HE1 sing N N 380 HIS NE2 HE2 sing N N 381 HIS OXT HXT sing N N 382 ILE N CA sing N N 383 ILE N H sing N N 384 ILE N H2 sing N N 385 ILE CA C sing N N 386 ILE CA CB sing N N 387 ILE CA HA sing N N 388 ILE C O doub N N 389 ILE C OXT sing N N 390 ILE CB CG1 sing N N 391 ILE CB CG2 sing N N 392 ILE CB HB sing N N 393 ILE CG1 CD1 sing N N 394 ILE CG1 HG12 sing N N 395 ILE CG1 HG13 sing N N 396 ILE CG2 HG21 sing N N 397 ILE CG2 HG22 sing N N 398 ILE CG2 HG23 sing N N 399 ILE CD1 HD11 sing N N 400 ILE CD1 HD12 sing N N 401 ILE CD1 HD13 sing N N 402 ILE OXT HXT sing N N 403 LEU N CA sing N N 404 LEU N H sing N N 405 LEU N H2 sing N N 406 LEU CA C sing N N 407 LEU CA CB sing N N 408 LEU CA HA sing N N 409 LEU C O doub N N 410 LEU C OXT sing N N 411 LEU CB CG sing N N 412 LEU CB HB2 sing N N 413 LEU CB HB3 sing N N 414 LEU CG CD1 sing N N 415 LEU CG CD2 sing N N 416 LEU CG HG sing N N 417 LEU CD1 HD11 sing N N 418 LEU CD1 HD12 sing N N 419 LEU CD1 HD13 sing N N 420 LEU CD2 HD21 sing N N 421 LEU CD2 HD22 sing N N 422 LEU CD2 HD23 sing N N 423 LEU OXT HXT sing N N 424 LYS N CA sing N N 425 LYS N H sing N N 426 LYS N H2 sing N N 427 LYS CA C sing N N 428 LYS CA CB sing N N 429 LYS CA HA sing N N 430 LYS C O doub N N 431 LYS C OXT sing N N 432 LYS CB CG sing N N 433 LYS CB HB2 sing N N 434 LYS CB HB3 sing N N 435 LYS CG CD sing N N 436 LYS CG HG2 sing N N 437 LYS CG HG3 sing N N 438 LYS CD CE sing N N 439 LYS CD HD2 sing N N 440 LYS CD HD3 sing N N 441 LYS CE NZ sing N N 442 LYS CE HE2 sing N N 443 LYS CE HE3 sing N N 444 LYS NZ HZ1 sing N N 445 LYS NZ HZ2 sing N N 446 LYS NZ HZ3 sing N N 447 LYS OXT HXT sing N N 448 MET N CA sing N N 449 MET N H sing N N 450 MET N H2 sing N N 451 MET CA C sing N N 452 MET CA CB sing N N 453 MET CA HA sing N N 454 MET C O doub N N 455 MET C OXT sing N N 456 MET CB CG sing N N 457 MET CB HB2 sing N N 458 MET CB HB3 sing N N 459 MET CG SD sing N N 460 MET CG HG2 sing N N 461 MET CG HG3 sing N N 462 MET SD CE sing N N 463 MET CE HE1 sing N N 464 MET CE HE2 sing N N 465 MET CE HE3 sing N N 466 MET OXT HXT sing N N 467 NAG C1 C2 sing N N 468 NAG C1 O1 sing N N 469 NAG C1 O5 sing N N 470 NAG C1 H1 sing N N 471 NAG C2 C3 sing N N 472 NAG C2 N2 sing N N 473 NAG C2 H2 sing N N 474 NAG C3 C4 sing N N 475 NAG C3 O3 sing N N 476 NAG C3 H3 sing N N 477 NAG C4 C5 sing N N 478 NAG C4 O4 sing N N 479 NAG C4 H4 sing N N 480 NAG C5 C6 sing N N 481 NAG C5 O5 sing N N 482 NAG C5 H5 sing N N 483 NAG C6 O6 sing N N 484 NAG C6 H61 sing N N 485 NAG C6 H62 sing N N 486 NAG C7 C8 sing N N 487 NAG C7 N2 sing N N 488 NAG C7 O7 doub N N 489 NAG C8 H81 sing N N 490 NAG C8 H82 sing N N 491 NAG C8 H83 sing N N 492 NAG N2 HN2 sing N N 493 NAG O1 HO1 sing N N 494 NAG O3 HO3 sing N N 495 NAG O4 HO4 sing N N 496 NAG O6 HO6 sing N N 497 PHE N CA sing N N 498 PHE N H sing N N 499 PHE N H2 sing N N 500 PHE CA C sing N N 501 PHE CA CB sing N N 502 PHE CA HA sing N N 503 PHE C O doub N N 504 PHE C OXT sing N N 505 PHE CB CG sing N N 506 PHE CB HB2 sing N N 507 PHE CB HB3 sing N N 508 PHE CG CD1 doub Y N 509 PHE CG CD2 sing Y N 510 PHE CD1 CE1 sing Y N 511 PHE CD1 HD1 sing N N 512 PHE CD2 CE2 doub Y N 513 PHE CD2 HD2 sing N N 514 PHE CE1 CZ doub Y N 515 PHE CE1 HE1 sing N N 516 PHE CE2 CZ sing Y N 517 PHE CE2 HE2 sing N N 518 PHE CZ HZ sing N N 519 PHE OXT HXT sing N N 520 PRO N CA sing N N 521 PRO N CD sing N N 522 PRO N H sing N N 523 PRO CA C sing N N 524 PRO CA CB sing N N 525 PRO CA HA sing N N 526 PRO C O doub N N 527 PRO C OXT sing N N 528 PRO CB CG sing N N 529 PRO CB HB2 sing N N 530 PRO CB HB3 sing N N 531 PRO CG CD sing N N 532 PRO CG HG2 sing N N 533 PRO CG HG3 sing N N 534 PRO CD HD2 sing N N 535 PRO CD HD3 sing N N 536 PRO OXT HXT sing N N 537 SER N CA sing N N 538 SER N H sing N N 539 SER N H2 sing N N 540 SER CA C sing N N 541 SER CA CB sing N N 542 SER CA HA sing N N 543 SER C O doub N N 544 SER C OXT sing N N 545 SER CB OG sing N N 546 SER CB HB2 sing N N 547 SER CB HB3 sing N N 548 SER OG HG sing N N 549 SER OXT HXT sing N N 550 THR N CA sing N N 551 THR N H sing N N 552 THR N H2 sing N N 553 THR CA C sing N N 554 THR CA CB sing N N 555 THR CA HA sing N N 556 THR C O doub N N 557 THR C OXT sing N N 558 THR CB OG1 sing N N 559 THR CB CG2 sing N N 560 THR CB HB sing N N 561 THR OG1 HG1 sing N N 562 THR CG2 HG21 sing N N 563 THR CG2 HG22 sing N N 564 THR CG2 HG23 sing N N 565 THR OXT HXT sing N N 566 TRP N CA sing N N 567 TRP N H sing N N 568 TRP N H2 sing N N 569 TRP CA C sing N N 570 TRP CA CB sing N N 571 TRP CA HA sing N N 572 TRP C O doub N N 573 TRP C OXT sing N N 574 TRP CB CG sing N N 575 TRP CB HB2 sing N N 576 TRP CB HB3 sing N N 577 TRP CG CD1 doub Y N 578 TRP CG CD2 sing Y N 579 TRP CD1 NE1 sing Y N 580 TRP CD1 HD1 sing N N 581 TRP CD2 CE2 doub Y N 582 TRP CD2 CE3 sing Y N 583 TRP NE1 CE2 sing Y N 584 TRP NE1 HE1 sing N N 585 TRP CE2 CZ2 sing Y N 586 TRP CE3 CZ3 doub Y N 587 TRP CE3 HE3 sing N N 588 TRP CZ2 CH2 doub Y N 589 TRP CZ2 HZ2 sing N N 590 TRP CZ3 CH2 sing Y N 591 TRP CZ3 HZ3 sing N N 592 TRP CH2 HH2 sing N N 593 TRP OXT HXT sing N N 594 TYR N CA sing N N 595 TYR N H sing N N 596 TYR N H2 sing N N 597 TYR CA C sing N N 598 TYR CA CB sing N N 599 TYR CA HA sing N N 600 TYR C O doub N N 601 TYR C OXT sing N N 602 TYR CB CG sing N N 603 TYR CB HB2 sing N N 604 TYR CB HB3 sing N N 605 TYR CG CD1 doub Y N 606 TYR CG CD2 sing Y N 607 TYR CD1 CE1 sing Y N 608 TYR CD1 HD1 sing N N 609 TYR CD2 CE2 doub Y N 610 TYR CD2 HD2 sing N N 611 TYR CE1 CZ doub Y N 612 TYR CE1 HE1 sing N N 613 TYR CE2 CZ sing Y N 614 TYR CE2 HE2 sing N N 615 TYR CZ OH sing N N 616 TYR OH HH sing N N 617 TYR OXT HXT sing N N 618 VAL N CA sing N N 619 VAL N H sing N N 620 VAL N H2 sing N N 621 VAL CA C sing N N 622 VAL CA CB sing N N 623 VAL CA HA sing N N 624 VAL C O doub N N 625 VAL C OXT sing N N 626 VAL CB CG1 sing N N 627 VAL CB CG2 sing N N 628 VAL CB HB sing N N 629 VAL CG1 HG11 sing N N 630 VAL CG1 HG12 sing N N 631 VAL CG1 HG13 sing N N 632 VAL CG2 HG21 sing N N 633 VAL CG2 HG22 sing N N 634 VAL CG2 HG23 sing N N 635 VAL OXT HXT sing N N 636 # _em_admin.current_status REL _em_admin.deposition_date 2025-10-31 _em_admin.deposition_site PDBJ _em_admin.entry_id 9XHA _em_admin.last_update 2026-11-04 _em_admin.map_release_date 2026-11-04 _em_admin.title 'Cryo-EM structure of unnatural-base aptamer AptD2 with DENV2 NS1' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 31634 _em_entity_assembly_naturalsource.organism 'Dengue virus 2 Thailand/16681/84' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_entity_assembly_synthetic.cell ? _em_entity_assembly_synthetic.cellular_location ? _em_entity_assembly_synthetic.entity_assembly_id 1 _em_entity_assembly_synthetic.id 1 _em_entity_assembly_synthetic.ncbi_tax_id 32630 _em_entity_assembly_synthetic.organ ? _em_entity_assembly_synthetic.organelle ? _em_entity_assembly_synthetic.organism 'synthetic construct' _em_entity_assembly_synthetic.strain ? _em_entity_assembly_synthetic.tissue ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50.5 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9XHA 'double helix' 9XHA 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 10 1_555 B DC 54 1_555 0.196 0.042 0.013 13.964 7.392 -10.607 1 C_DG-1:DC43_C C -1 ? C 43 ? 19 1 1 B DC 12 1_555 B DG 53 1_555 0.184 -0.154 -0.171 -3.250 -3.613 1.136 2 C_DC1:DG42_C C 1 ? C 42 ? 19 1 1 B DT 13 1_555 B DA 52 1_555 -0.173 -0.059 0.238 1.217 -1.726 -5.653 3 C_DT2:DA41_C C 2 ? C 41 ? 20 1 1 B DG 14 1_555 B DA 51 1_555 0.953 1.286 0.166 3.388 -2.301 -15.926 4 C_DG3:DA40_C C 3 ? C 40 ? 8 1 1 B DG 15 1_555 B DC 50 1_555 -0.143 -0.206 -0.575 -3.080 3.653 -2.008 5 C_DG4:DC39_C C 4 ? C 39 ? 19 1 1 B DG 16 1_555 B DA 49 1_555 6.478 -4.433 0.526 17.899 4.114 5.080 6 C_DG5:DA38_C C 5 ? C 38 ? 11 9 1 B DA 17 1_555 B DG 48 1_555 -6.531 -4.450 0.374 -21.186 4.730 4.402 7 C_DA6:DG37_C C 6 ? C 37 ? 11 9 1 B DA 18 1_555 B DC 47 1_555 -2.870 -0.542 -0.082 -2.561 17.955 5.699 8 C_DA7:DC36_C C 7 ? C 36 ? ? 1 1 B DC 19 1_555 B DG 46 1_555 0.170 -0.124 -0.260 14.281 12.911 1.789 9 C_DC8:DG35_C C 8 ? C 35 ? 19 1 1 B DA 21 1_555 B DT 45 1_555 -4.188 -1.897 0.521 18.384 4.894 -95.795 10 C_DA10:DT34_C C 10 ? C 34 ? 24 4 1 B DG 22 1_555 B DA 34 1_555 3.444 -3.893 0.346 -15.539 -1.931 -66.684 11 C_DG11:DA23_C C 11 ? C 23 ? 10 6 1 B DG 37 1_555 B DG 33 1_555 1.487 3.291 -0.019 -7.656 -3.022 -97.390 12 C_DG26:DG22_C C 26 ? C 22 ? 6 3 1 B DG 43 1_555 B DG 24 1_555 -1.548 -3.531 0.080 3.862 8.226 89.703 13 C_DG32:DG13_C C 32 ? C 13 ? 6 3 1 B DG 38 1_555 B DG 32 1_555 -1.259 -3.734 0.090 9.559 9.047 96.004 14 C_DG27:DG21_C C 27 ? C 21 ? 6 3 1 B DG 25 1_555 B DG 42 1_555 -1.218 -3.609 -0.592 3.729 -1.555 92.977 15 C_DG14:DG31_C C 14 ? C 31 ? 6 3 1 B DC 26 1_555 B DG 31 1_555 0.255 -0.317 0.983 7.910 3.118 5.275 16 C_DC15:DG20_C C 15 ? C 20 ? 19 1 1 B DT 41 1_555 B DA 30 1_555 4.141 -1.920 0.533 -9.843 -0.578 -101.410 17 C_DT30:DA19_C C 30 ? C 19 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 10 1_555 B DC 54 1_555 B DC 12 1_555 B DG 53 1_555 -1.590 1.781 6.954 13.217 3.486 45.208 1.631 4.250 6.389 4.417 -16.746 47.125 1 CC_DG-1DC1:DG42DC43_CC C -1 ? C 43 ? C 1 ? C 42 ? 1 B DC 12 1_555 B DG 53 1_555 B DT 13 1_555 B DA 52 1_555 -0.806 0.383 3.458 -4.324 3.411 30.004 -0.006 0.601 3.557 6.520 8.264 30.494 2 CC_DC1DT2:DA41DG42_CC C 1 ? C 42 ? C 2 ? C 41 ? 1 B DT 13 1_555 B DA 52 1_555 B DG 14 1_555 B DA 51 1_555 -0.753 -0.153 3.251 -1.486 2.485 43.580 -0.443 0.870 3.260 3.343 1.998 43.672 3 CC_DT2DG3:DA40DA41_CC C 2 ? C 41 ? C 3 ? C 40 ? 1 B DG 14 1_555 B DA 51 1_555 B DG 15 1_555 B DC 50 1_555 1.193 0.203 3.648 4.940 -0.121 25.877 0.482 -1.099 3.804 -0.267 -10.904 26.336 4 CC_DG3DG4:DC39DA40_CC C 3 ? C 40 ? C 4 ? C 39 ? 1 B DG 15 1_555 B DC 50 1_555 B DG 16 1_555 B DA 49 1_555 0.859 1.555 3.115 -5.982 5.936 56.556 1.313 -1.215 3.152 6.226 6.275 57.129 5 CC_DG4DG5:DA38DC39_CC C 4 ? C 39 ? C 5 ? C 38 ? 1 B DG 16 1_555 B DA 49 1_555 B DA 17 1_555 B DG 48 1_555 0.038 -1.363 4.381 5.188 -1.142 -5.445 15.078 22.107 2.907 9.527 43.283 -7.606 6 CC_DG5DA6:DG37DA38_CC C 5 ? C 38 ? C 6 ? C 37 ? 1 B DA 17 1_555 B DG 48 1_555 B DA 18 1_555 B DC 47 1_555 -0.542 0.873 3.124 -3.980 6.586 48.602 0.566 0.359 3.241 7.943 4.801 49.171 7 CC_DA6DA7:DC36DG37_CC C 6 ? C 37 ? C 7 ? C 36 ? 1 B DA 18 1_555 B DC 47 1_555 B DC 19 1_555 B DG 46 1_555 0.002 0.143 3.029 2.134 4.661 37.413 -0.338 0.253 3.020 7.224 -3.308 37.750 8 CC_DA7DC8:DG35DC36_CC C 7 ? C 36 ? C 8 ? C 35 ? 1 B DA 21 1_555 B DT 45 1_555 B DG 22 1_555 B DA 34 1_555 -4.905 1.577 4.042 30.502 7.332 -1.057 -6.497 5.833 4.536 -20.596 85.678 -31.388 9 CC_DA10DG11:DA23DT34_CC C 10 ? C 34 ? C 11 ? C 23 ? 1 B DG 22 1_555 B DA 34 1_555 B DG 37 1_555 B DG 33 1_555 -1.131 7.057 -1.717 171.244 -21.539 -112.316 -3.569 -0.872 -0.313 10.847 86.243 -175.877 10 CC_DG11DG26:DG22DA23_CC C 11 ? C 23 ? C 26 ? C 22 ? 1 B DG 37 1_555 B DG 33 1_555 B DG 43 1_555 B DG 24 1_555 -1.549 -3.559 -0.609 -4.812 -3.180 178.720 -1.780 0.775 -0.607 -1.590 2.406 178.722 11 CC_DG26DG32:DG13DG22_CC C 26 ? C 22 ? C 32 ? C 13 ? 1 B DG 43 1_555 B DG 24 1_555 B DG 38 1_555 B DG 32 1_555 1.000 3.471 -2.611 -147.395 -86.667 -92.710 -2.011 0.966 -0.086 43.963 -74.768 -173.782 12 CC_DG32DG27:DG21DG13_CC C 32 ? C 13 ? C 27 ? C 21 ? 1 B DG 25 1_555 B DG 42 1_555 B DC 26 1_555 B DG 31 1_555 -1.405 -2.390 2.778 -6.811 -4.057 69.172 -1.965 1.014 3.006 -3.562 5.980 69.568 13 CC_DG14DC15:DG20DG31_CC C 14 ? C 31 ? C 15 ? C 20 ? 1 B DC 26 1_555 B DG 31 1_555 B DT 41 1_555 B DA 30 1_555 0.592 -2.170 3.172 -16.183 -0.297 -26.510 4.121 -2.084 3.006 0.584 -31.801 -30.985 14 CC_DC15DT30:DA19DG20_CC C 15 ? C 20 ? C 30 ? C 19 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Agency for Medical Research and Development (AMED)' Japan JP223fa627001 1 'Japan Agency for Medical Research and Development (AMED)' Japan JP19am0401005 2 'Japan Agency for Medical Research and Development (AMED)' Japan JP23ama121002 3 'Japan Agency for Medical Research and Development (AMED)' Japan JP23ama121012 4 'Japan Science and Technology' Japan JPMJCR20E2 5 'Japan Science and Technology' Japan JPMJPR22E4 6 'Japan Society for the Promotion of Science (JSPS)' Japan JP20K15754 7 'Japan Society for the Promotion of Science (JSPS)' Japan JP22K15072 8 'Japan Society for the Promotion of Science (JSPS)' Japan JP24K01961 9 'Japan Society for the Promotion of Science (JSPS)' Japan JP25KJ0866 10 'Japan Society for the Promotion of Science (JSPS)' Japan JP23KJ0491 11 'Japan Agency for Medical Research and Development (AMED)' Japan JP25gm7110004 12 'Japan Agency for Medical Research and Development (AMED)' Japan JP223fa627001 13 # _atom_sites.entry_id 9XHA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P S # loop_ #