data_9XHJ # _entry.id 9XHJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9XHJ pdb_00009xhj 10.2210/pdb9xhj/pdb WWPDB D_1300065330 ? ? EMDB EMD-66876 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-11-04 ? 2 'EM metadata' 1 0 2026-11-04 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9XHJ _pdbx_database_status.recvd_initial_deposition_date 2025-11-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of deep sight fluorescence protein dsFP11' _pdbx_database_related.db_id EMD-66876 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email caolongxing@westlake.edu.cn _pdbx_contact_author.name_first longxing _pdbx_contact_author.name_last cao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4002-3648 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Qu, Y.N.' 1 ? 'Ding, G.M.' 2 ? 'Xu, Z.H.' 3 ? 'Cao, L.X.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'De novo design of NIR-I/II fluorescent proteins for in vivo deep tissue imaging' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ding, G.M.' 1 ? primary 'Xu, Z.H.' 2 ? primary 'Qu, Y.N.' 3 ? primary 'Cao, L.X.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man dsFP11 15052.781 1 ? ? ? ? 2 non-polymer syn ;4-[(2~{E})-2-[2-[3-[(~{E})-2-[1-(4-sulfobutyl)benzo[cd]indol-1-ium-2-yl]ethenyl]cyclohex-2-en-1-ylidene]ethylidene]benzo[cd]indol-1-yl]butane-1-sulfonic acid ; 709.893 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGGTMPVLEAVKKLSEILEEKAKKYNDELILRVAEKIRKAGEELEKELEERRKELEKRPVPEAEIELELFSYALKVFKE AVEKCLEHYKKKEKTINEKQKEIFKEFKKASKAAIELLEILLAALRIKL ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGGTMPVLEAVKKLSEILEEKAKKYNDELILRVAEKIRKAGEELEKELEERRKELEKRPVPEAEIELELFSYALKVFKE AVEKCLEHYKKKEKTINEKQKEIFKEFKKASKAAIELLEILLAALRIKL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;4-[(2~{E})-2-[2-[3-[(~{E})-2-[1-(4-sulfobutyl)benzo[cd]indol-1-ium-2-yl]ethenyl]cyclohex-2-en-1-ylidene]ethylidene]benzo[cd]indol-1-yl]butane-1-sulfonic acid ; _pdbx_entity_nonpoly.comp_id A1EZ8 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 GLY n 1 5 THR n 1 6 MET n 1 7 PRO n 1 8 VAL n 1 9 LEU n 1 10 GLU n 1 11 ALA n 1 12 VAL n 1 13 LYS n 1 14 LYS n 1 15 LEU n 1 16 SER n 1 17 GLU n 1 18 ILE n 1 19 LEU n 1 20 GLU n 1 21 GLU n 1 22 LYS n 1 23 ALA n 1 24 LYS n 1 25 LYS n 1 26 TYR n 1 27 ASN n 1 28 ASP n 1 29 GLU n 1 30 LEU n 1 31 ILE n 1 32 LEU n 1 33 ARG n 1 34 VAL n 1 35 ALA n 1 36 GLU n 1 37 LYS n 1 38 ILE n 1 39 ARG n 1 40 LYS n 1 41 ALA n 1 42 GLY n 1 43 GLU n 1 44 GLU n 1 45 LEU n 1 46 GLU n 1 47 LYS n 1 48 GLU n 1 49 LEU n 1 50 GLU n 1 51 GLU n 1 52 ARG n 1 53 ARG n 1 54 LYS n 1 55 GLU n 1 56 LEU n 1 57 GLU n 1 58 LYS n 1 59 ARG n 1 60 PRO n 1 61 VAL n 1 62 PRO n 1 63 GLU n 1 64 ALA n 1 65 GLU n 1 66 ILE n 1 67 GLU n 1 68 LEU n 1 69 GLU n 1 70 LEU n 1 71 PHE n 1 72 SER n 1 73 TYR n 1 74 ALA n 1 75 LEU n 1 76 LYS n 1 77 VAL n 1 78 PHE n 1 79 LYS n 1 80 GLU n 1 81 ALA n 1 82 VAL n 1 83 GLU n 1 84 LYS n 1 85 CYS n 1 86 LEU n 1 87 GLU n 1 88 HIS n 1 89 TYR n 1 90 LYS n 1 91 LYS n 1 92 LYS n 1 93 GLU n 1 94 LYS n 1 95 THR n 1 96 ILE n 1 97 ASN n 1 98 GLU n 1 99 LYS n 1 100 GLN n 1 101 LYS n 1 102 GLU n 1 103 ILE n 1 104 PHE n 1 105 LYS n 1 106 GLU n 1 107 PHE n 1 108 LYS n 1 109 LYS n 1 110 ALA n 1 111 SER n 1 112 LYS n 1 113 ALA n 1 114 ALA n 1 115 ILE n 1 116 GLU n 1 117 LEU n 1 118 LEU n 1 119 GLU n 1 120 ILE n 1 121 LEU n 1 122 LEU n 1 123 ALA n 1 124 ALA n 1 125 LEU n 1 126 ARG n 1 127 ILE n 1 128 LYS n 1 129 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 129 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1EZ8 non-polymer . ;4-[(2~{E})-2-[2-[3-[(~{E})-2-[1-(4-sulfobutyl)benzo[cd]indol-1-ium-2-yl]ethenyl]cyclohex-2-en-1-ylidene]ethylidene]benzo[cd]indol-1-yl]butane-1-sulfonic acid ; ? 'C40 H41 N2 O6 S2 1' 709.893 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 MET 6 6 6 MET MET A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 CYS 85 85 85 CYS CYS A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 LEU 129 129 129 LEU LEU A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1EZ8 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1EZ8 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id A1EZ8 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id A1EZ8 _pdbx_nonpoly_scheme.auth_mon_id FDI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9XHJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9XHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9XHJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9XHJ _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.31 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 1107 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.865 ? 1478 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 17.136 ? 156 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.036 ? 159 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 175 ? f_plane_restr ? ? ? # _struct.entry_id 9XHJ _struct.title 'Cryo-EM structure of deep sight fluorescence protein dsFP11' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9XHJ _struct_keywords.text 'deep sight fluorescence protein, LUMINESCENT PROTEIN' _struct_keywords.pdbx_keywords 'LUMINESCENT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9XHJ _struct_ref.pdbx_db_accession 9XHJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9XHJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9XHJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 129 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 5 ? ALA A 23 ? THR A 5 ALA A 23 1 ? 19 HELX_P HELX_P2 AA2 ASP A 28 ? LEU A 56 ? ASP A 28 LEU A 56 1 ? 29 HELX_P HELX_P3 AA3 GLU A 65 ? HIS A 88 ? GLU A 65 HIS A 88 1 ? 24 HELX_P HELX_P4 AA4 GLU A 102 ? LYS A 128 ? GLU A 102 LYS A 128 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 85 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id A1EZ8 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C8 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 85 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1EZ8 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.848 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id A1EZ8 _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 85 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id A1EZ8 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 201 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 85 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C8 _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id CYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id A1EZ8 _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Covalent chemical modification' # _pdbx_entry_details.entry_id 9XHJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 27 ? ? -171.81 -164.34 2 1 ASP A 28 ? ? 64.18 70.20 3 1 ARG A 59 ? ? -141.51 -41.01 4 1 VAL A 61 ? ? -117.86 56.79 5 1 PRO A 62 ? ? -95.15 56.69 6 1 ALA A 64 ? ? 64.25 167.59 7 1 GLU A 65 ? ? 72.48 -8.71 8 1 ASN A 97 ? ? -80.91 48.68 9 1 GLU A 98 ? ? 67.14 -11.00 10 1 LYS A 99 ? ? -120.20 -63.37 11 1 GLN A 100 ? ? 25.75 -118.16 12 1 LYS A 101 ? ? 42.07 -147.34 13 1 GLU A 102 ? ? 60.11 -73.92 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9XHJ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9XHJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.31 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 72277 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name dsFP11 _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9XHJ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9XHJ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9XHJ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A GLY 3 ? A GLY 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1EZ8 C5 C N N 1 A1EZ8 C6 C N N 2 A1EZ8 C10 C N N 3 A1EZ8 C14 C Y N 4 A1EZ8 C15 C Y N 5 A1EZ8 C17 C Y N 6 A1EZ8 C18 C Y N 7 A1EZ8 C24 C N N 8 A1EZ8 C26 C N N 9 A1EZ8 C33 C Y N 10 A1EZ8 C34 C Y N 11 A1EZ8 C11 C N N 12 A1EZ8 C12 C N N 13 A1EZ8 C13 C Y N 14 A1EZ8 C16 C Y N 15 A1EZ8 C19 C Y N 16 A1EZ8 C20 C Y N 17 A1EZ8 C21 C Y N 18 A1EZ8 C22 C Y N 19 A1EZ8 C23 C N N 20 A1EZ8 C25 C N N 21 A1EZ8 C27 C N N 22 A1EZ8 C29 C N N 23 A1EZ8 C30 C N N 24 A1EZ8 C31 C N N 25 A1EZ8 C32 C Y N 26 A1EZ8 C35 C Y N 27 A1EZ8 C36 C Y N 28 A1EZ8 C37 C Y N 29 A1EZ8 C38 C Y N 30 A1EZ8 C39 C Y N 31 A1EZ8 C40 C Y N 32 A1EZ8 C41 C Y N 33 A1EZ8 C42 C N N 34 A1EZ8 C43 C N N 35 A1EZ8 C44 C N N 36 A1EZ8 C45 C N N 37 A1EZ8 C7 C N N 38 A1EZ8 C8 C N N 39 A1EZ8 C9 C N N 40 A1EZ8 N2 N N N 41 A1EZ8 N3 N N N 42 A1EZ8 O2 O N N 43 A1EZ8 O3 O N N 44 A1EZ8 O4 O N N 45 A1EZ8 O5 O N N 46 A1EZ8 O6 O N N 47 A1EZ8 O7 O N N 48 A1EZ8 S1 S N N 49 A1EZ8 S2 S N N 50 A1EZ8 H1 H N N 51 A1EZ8 H2 H N N 52 A1EZ8 H3 H N N 53 A1EZ8 H4 H N N 54 A1EZ8 H5 H N N 55 A1EZ8 H7 H N N 56 A1EZ8 H9 H N N 57 A1EZ8 H10 H N N 58 A1EZ8 H11 H N N 59 A1EZ8 H12 H N N 60 A1EZ8 H13 H N N 61 A1EZ8 H14 H N N 62 A1EZ8 H15 H N N 63 A1EZ8 H17 H N N 64 A1EZ8 H18 H N N 65 A1EZ8 H19 H N N 66 A1EZ8 H20 H N N 67 A1EZ8 H21 H N N 68 A1EZ8 H22 H N N 69 A1EZ8 H23 H N N 70 A1EZ8 H24 H N N 71 A1EZ8 H25 H N N 72 A1EZ8 H26 H N N 73 A1EZ8 H27 H N N 74 A1EZ8 H29 H N N 75 A1EZ8 H31 H N N 76 A1EZ8 H32 H N N 77 A1EZ8 H33 H N N 78 A1EZ8 H34 H N N 79 A1EZ8 H35 H N N 80 A1EZ8 H36 H N N 81 A1EZ8 H37 H N N 82 A1EZ8 H38 H N N 83 A1EZ8 H39 H N N 84 A1EZ8 H40 H N N 85 A1EZ8 H41 H N N 86 A1EZ8 H42 H N N 87 A1EZ8 H44 H N N 88 A1EZ8 H8 H N N 89 A1EZ8 H16 H N N 90 A1EZ8 H28 H N N 91 ALA N N N N 92 ALA CA C N S 93 ALA C C N N 94 ALA O O N N 95 ALA CB C N N 96 ALA OXT O N N 97 ALA H H N N 98 ALA H2 H N N 99 ALA HA H N N 100 ALA HB1 H N N 101 ALA HB2 H N N 102 ALA HB3 H N N 103 ALA HXT H N N 104 ARG N N N N 105 ARG CA C N S 106 ARG C C N N 107 ARG O O N N 108 ARG CB C N N 109 ARG CG C N N 110 ARG CD C N N 111 ARG NE N N N 112 ARG CZ C N N 113 ARG NH1 N N N 114 ARG NH2 N N N 115 ARG OXT O N N 116 ARG H H N N 117 ARG H2 H N N 118 ARG HA H N N 119 ARG HB2 H N N 120 ARG HB3 H N N 121 ARG HG2 H N N 122 ARG HG3 H N N 123 ARG HD2 H N N 124 ARG HD3 H N N 125 ARG HE H N N 126 ARG HH11 H N N 127 ARG HH12 H N N 128 ARG HH21 H N N 129 ARG HH22 H N N 130 ARG HXT H N N 131 ASN N N N N 132 ASN CA C N S 133 ASN C C N N 134 ASN O O N N 135 ASN CB C N N 136 ASN CG C N N 137 ASN OD1 O N N 138 ASN ND2 N N N 139 ASN OXT O N N 140 ASN H H N N 141 ASN H2 H N N 142 ASN HA H N N 143 ASN HB2 H N N 144 ASN HB3 H N N 145 ASN HD21 H N N 146 ASN HD22 H N N 147 ASN HXT H N N 148 ASP N N N N 149 ASP CA C N S 150 ASP C C N N 151 ASP O O N N 152 ASP CB C N N 153 ASP CG C N N 154 ASP OD1 O N N 155 ASP OD2 O N N 156 ASP OXT O N N 157 ASP H H N N 158 ASP H2 H N N 159 ASP HA H N N 160 ASP HB2 H N N 161 ASP HB3 H N N 162 ASP HD2 H N N 163 ASP HXT H N N 164 CYS N N N N 165 CYS CA C N R 166 CYS C C N N 167 CYS O O N N 168 CYS CB C N N 169 CYS SG S N N 170 CYS OXT O N N 171 CYS H H N N 172 CYS H2 H N N 173 CYS HA H N N 174 CYS HB2 H N N 175 CYS HB3 H N N 176 CYS HG H N N 177 CYS HXT H N N 178 GLN N N N N 179 GLN CA C N S 180 GLN C C N N 181 GLN O O N N 182 GLN CB C N N 183 GLN CG C N N 184 GLN CD C N N 185 GLN OE1 O N N 186 GLN NE2 N N N 187 GLN OXT O N N 188 GLN H H N N 189 GLN H2 H N N 190 GLN HA H N N 191 GLN HB2 H N N 192 GLN HB3 H N N 193 GLN HG2 H N N 194 GLN HG3 H N N 195 GLN HE21 H N N 196 GLN HE22 H N N 197 GLN HXT H N N 198 GLU N N N N 199 GLU CA C N S 200 GLU C C N N 201 GLU O O N N 202 GLU CB C N N 203 GLU CG C N N 204 GLU CD C N N 205 GLU OE1 O N N 206 GLU OE2 O N N 207 GLU OXT O N N 208 GLU H H N N 209 GLU H2 H N N 210 GLU HA H N N 211 GLU HB2 H N N 212 GLU HB3 H N N 213 GLU HG2 H N N 214 GLU HG3 H N N 215 GLU HE2 H N N 216 GLU HXT H N N 217 GLY N N N N 218 GLY CA C N N 219 GLY C C N N 220 GLY O O N N 221 GLY OXT O N N 222 GLY H H N N 223 GLY H2 H N N 224 GLY HA2 H N N 225 GLY HA3 H N N 226 GLY HXT H N N 227 HIS N N N N 228 HIS CA C N S 229 HIS C C N N 230 HIS O O N N 231 HIS CB C N N 232 HIS CG C Y N 233 HIS ND1 N Y N 234 HIS CD2 C Y N 235 HIS CE1 C Y N 236 HIS NE2 N Y N 237 HIS OXT O N N 238 HIS H H N N 239 HIS H2 H N N 240 HIS HA H N N 241 HIS HB2 H N N 242 HIS HB3 H N N 243 HIS HD1 H N N 244 HIS HD2 H N N 245 HIS HE1 H N N 246 HIS HE2 H N N 247 HIS HXT H N N 248 ILE N N N N 249 ILE CA C N S 250 ILE C C N N 251 ILE O O N N 252 ILE CB C N S 253 ILE CG1 C N N 254 ILE CG2 C N N 255 ILE CD1 C N N 256 ILE OXT O N N 257 ILE H H N N 258 ILE H2 H N N 259 ILE HA H N N 260 ILE HB H N N 261 ILE HG12 H N N 262 ILE HG13 H N N 263 ILE HG21 H N N 264 ILE HG22 H N N 265 ILE HG23 H N N 266 ILE HD11 H N N 267 ILE HD12 H N N 268 ILE HD13 H N N 269 ILE HXT H N N 270 LEU N N N N 271 LEU CA C N S 272 LEU C C N N 273 LEU O O N N 274 LEU CB C N N 275 LEU CG C N N 276 LEU CD1 C N N 277 LEU CD2 C N N 278 LEU OXT O N N 279 LEU H H N N 280 LEU H2 H N N 281 LEU HA H N N 282 LEU HB2 H N N 283 LEU HB3 H N N 284 LEU HG H N N 285 LEU HD11 H N N 286 LEU HD12 H N N 287 LEU HD13 H N N 288 LEU HD21 H N N 289 LEU HD22 H N N 290 LEU HD23 H N N 291 LEU HXT H N N 292 LYS N N N N 293 LYS CA C N S 294 LYS C C N N 295 LYS O O N N 296 LYS CB C N N 297 LYS CG C N N 298 LYS CD C N N 299 LYS CE C N N 300 LYS NZ N N N 301 LYS OXT O N N 302 LYS H H N N 303 LYS H2 H N N 304 LYS HA H N N 305 LYS HB2 H N N 306 LYS HB3 H N N 307 LYS HG2 H N N 308 LYS HG3 H N N 309 LYS HD2 H N N 310 LYS HD3 H N N 311 LYS HE2 H N N 312 LYS HE3 H N N 313 LYS HZ1 H N N 314 LYS HZ2 H N N 315 LYS HZ3 H N N 316 LYS HXT H N N 317 MET N N N N 318 MET CA C N S 319 MET C C N N 320 MET O O N N 321 MET CB C N N 322 MET CG C N N 323 MET SD S N N 324 MET CE C N N 325 MET OXT O N N 326 MET H H N N 327 MET H2 H N N 328 MET HA H N N 329 MET HB2 H N N 330 MET HB3 H N N 331 MET HG2 H N N 332 MET HG3 H N N 333 MET HE1 H N N 334 MET HE2 H N N 335 MET HE3 H N N 336 MET HXT H N N 337 PHE N N N N 338 PHE CA C N S 339 PHE C C N N 340 PHE O O N N 341 PHE CB C N N 342 PHE CG C Y N 343 PHE CD1 C Y N 344 PHE CD2 C Y N 345 PHE CE1 C Y N 346 PHE CE2 C Y N 347 PHE CZ C Y N 348 PHE OXT O N N 349 PHE H H N N 350 PHE H2 H N N 351 PHE HA H N N 352 PHE HB2 H N N 353 PHE HB3 H N N 354 PHE HD1 H N N 355 PHE HD2 H N N 356 PHE HE1 H N N 357 PHE HE2 H N N 358 PHE HZ H N N 359 PHE HXT H N N 360 PRO N N N N 361 PRO CA C N S 362 PRO C C N N 363 PRO O O N N 364 PRO CB C N N 365 PRO CG C N N 366 PRO CD C N N 367 PRO OXT O N N 368 PRO H H N N 369 PRO HA H N N 370 PRO HB2 H N N 371 PRO HB3 H N N 372 PRO HG2 H N N 373 PRO HG3 H N N 374 PRO HD2 H N N 375 PRO HD3 H N N 376 PRO HXT H N N 377 SER N N N N 378 SER CA C N S 379 SER C C N N 380 SER O O N N 381 SER CB C N N 382 SER OG O N N 383 SER OXT O N N 384 SER H H N N 385 SER H2 H N N 386 SER HA H N N 387 SER HB2 H N N 388 SER HB3 H N N 389 SER HG H N N 390 SER HXT H N N 391 THR N N N N 392 THR CA C N S 393 THR C C N N 394 THR O O N N 395 THR CB C N R 396 THR OG1 O N N 397 THR CG2 C N N 398 THR OXT O N N 399 THR H H N N 400 THR H2 H N N 401 THR HA H N N 402 THR HB H N N 403 THR HG1 H N N 404 THR HG21 H N N 405 THR HG22 H N N 406 THR HG23 H N N 407 THR HXT H N N 408 TYR N N N N 409 TYR CA C N S 410 TYR C C N N 411 TYR O O N N 412 TYR CB C N N 413 TYR CG C Y N 414 TYR CD1 C Y N 415 TYR CD2 C Y N 416 TYR CE1 C Y N 417 TYR CE2 C Y N 418 TYR CZ C Y N 419 TYR OH O N N 420 TYR OXT O N N 421 TYR H H N N 422 TYR H2 H N N 423 TYR HA H N N 424 TYR HB2 H N N 425 TYR HB3 H N N 426 TYR HD1 H N N 427 TYR HD2 H N N 428 TYR HE1 H N N 429 TYR HE2 H N N 430 TYR HH H N N 431 TYR HXT H N N 432 VAL N N N N 433 VAL CA C N S 434 VAL C C N N 435 VAL O O N N 436 VAL CB C N N 437 VAL CG1 C N N 438 VAL CG2 C N N 439 VAL OXT O N N 440 VAL H H N N 441 VAL H2 H N N 442 VAL HA H N N 443 VAL HB H N N 444 VAL HG11 H N N 445 VAL HG12 H N N 446 VAL HG13 H N N 447 VAL HG21 H N N 448 VAL HG22 H N N 449 VAL HG23 H N N 450 VAL HXT H N N 451 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EZ8 O3 S1 doub N N 1 A1EZ8 C26 S1 sing N N 2 A1EZ8 C26 C25 sing N N 3 A1EZ8 S1 O2 doub N N 4 A1EZ8 S1 O4 sing N N 5 A1EZ8 C21 C22 doub Y N 6 A1EZ8 C21 C20 sing Y N 7 A1EZ8 C22 C17 sing Y N 8 A1EZ8 C20 C19 doub Y N 9 A1EZ8 C24 C25 sing N N 10 A1EZ8 C24 C23 sing N N 11 A1EZ8 C19 C18 sing Y N 12 A1EZ8 C19 N2 sing N N 13 A1EZ8 C17 C18 sing Y N 14 A1EZ8 C17 C16 doub Y N 15 A1EZ8 C18 C13 doub Y N 16 A1EZ8 C23 N2 sing N N 17 A1EZ8 C16 C15 sing Y N 18 A1EZ8 N2 C12 sing N N 19 A1EZ8 C12 C13 sing N N 20 A1EZ8 C12 C11 doub N E 21 A1EZ8 C13 C14 sing Y N 22 A1EZ8 C15 C14 doub Y N 23 A1EZ8 C11 C10 sing N N 24 A1EZ8 C10 C9 doub N E 25 A1EZ8 C5 C27 sing N N 26 A1EZ8 C5 C6 sing N N 27 A1EZ8 O6 S2 doub N N 28 A1EZ8 C27 C9 sing N N 29 A1EZ8 C9 C8 sing N N 30 A1EZ8 O5 S2 doub N N 31 A1EZ8 C6 C7 sing N N 32 A1EZ8 O7 S2 sing N N 33 A1EZ8 C8 C7 doub N N 34 A1EZ8 S2 C45 sing N N 35 A1EZ8 C7 C29 sing N N 36 A1EZ8 C29 C30 doub N E 37 A1EZ8 C45 C44 sing N N 38 A1EZ8 C30 C31 sing N N 39 A1EZ8 C44 C43 sing N N 40 A1EZ8 C42 C43 sing N N 41 A1EZ8 C42 N3 sing N N 42 A1EZ8 C31 N3 doub N N 43 A1EZ8 C31 C38 sing N N 44 A1EZ8 N3 C32 sing N N 45 A1EZ8 C38 C39 doub Y N 46 A1EZ8 C38 C37 sing Y N 47 A1EZ8 C39 C40 sing Y N 48 A1EZ8 C32 C37 doub Y N 49 A1EZ8 C32 C33 sing Y N 50 A1EZ8 C37 C36 sing Y N 51 A1EZ8 C33 C34 doub Y N 52 A1EZ8 C40 C41 doub Y N 53 A1EZ8 C36 C41 sing Y N 54 A1EZ8 C36 C35 doub Y N 55 A1EZ8 C34 C35 sing Y N 56 A1EZ8 C5 H1 sing N N 57 A1EZ8 C5 H2 sing N N 58 A1EZ8 C6 H3 sing N N 59 A1EZ8 C6 H4 sing N N 60 A1EZ8 C10 H5 sing N N 61 A1EZ8 C14 H7 sing N N 62 A1EZ8 C24 H9 sing N N 63 A1EZ8 C24 H10 sing N N 64 A1EZ8 C26 H11 sing N N 65 A1EZ8 C26 H12 sing N N 66 A1EZ8 C33 H13 sing N N 67 A1EZ8 C34 H14 sing N N 68 A1EZ8 C11 H15 sing N N 69 A1EZ8 C16 H17 sing N N 70 A1EZ8 C20 H18 sing N N 71 A1EZ8 C21 H19 sing N N 72 A1EZ8 C22 H20 sing N N 73 A1EZ8 C23 H21 sing N N 74 A1EZ8 C23 H22 sing N N 75 A1EZ8 C25 H23 sing N N 76 A1EZ8 C25 H24 sing N N 77 A1EZ8 C27 H25 sing N N 78 A1EZ8 C27 H26 sing N N 79 A1EZ8 C29 H27 sing N N 80 A1EZ8 C30 H29 sing N N 81 A1EZ8 C35 H31 sing N N 82 A1EZ8 C39 H32 sing N N 83 A1EZ8 C40 H33 sing N N 84 A1EZ8 C41 H34 sing N N 85 A1EZ8 C42 H35 sing N N 86 A1EZ8 C42 H36 sing N N 87 A1EZ8 C43 H37 sing N N 88 A1EZ8 C43 H38 sing N N 89 A1EZ8 C44 H39 sing N N 90 A1EZ8 C44 H40 sing N N 91 A1EZ8 C45 H41 sing N N 92 A1EZ8 C45 H42 sing N N 93 A1EZ8 C8 H44 sing N N 94 A1EZ8 O4 H8 sing N N 95 A1EZ8 O7 H16 sing N N 96 A1EZ8 C15 H28 sing N N 97 ALA N CA sing N N 98 ALA N H sing N N 99 ALA N H2 sing N N 100 ALA CA C sing N N 101 ALA CA CB sing N N 102 ALA CA HA sing N N 103 ALA C O doub N N 104 ALA C OXT sing N N 105 ALA CB HB1 sing N N 106 ALA CB HB2 sing N N 107 ALA CB HB3 sing N N 108 ALA OXT HXT sing N N 109 ARG N CA sing N N 110 ARG N H sing N N 111 ARG N H2 sing N N 112 ARG CA C sing N N 113 ARG CA CB sing N N 114 ARG CA HA sing N N 115 ARG C O doub N N 116 ARG C OXT sing N N 117 ARG CB CG sing N N 118 ARG CB HB2 sing N N 119 ARG CB HB3 sing N N 120 ARG CG CD sing N N 121 ARG CG HG2 sing N N 122 ARG CG HG3 sing N N 123 ARG CD NE sing N N 124 ARG CD HD2 sing N N 125 ARG CD HD3 sing N N 126 ARG NE CZ sing N N 127 ARG NE HE sing N N 128 ARG CZ NH1 sing N N 129 ARG CZ NH2 doub N N 130 ARG NH1 HH11 sing N N 131 ARG NH1 HH12 sing N N 132 ARG NH2 HH21 sing N N 133 ARG NH2 HH22 sing N N 134 ARG OXT HXT sing N N 135 ASN N CA sing N N 136 ASN N H sing N N 137 ASN N H2 sing N N 138 ASN CA C sing N N 139 ASN CA CB sing N N 140 ASN CA HA sing N N 141 ASN C O doub N N 142 ASN C OXT sing N N 143 ASN CB CG sing N N 144 ASN CB HB2 sing N N 145 ASN CB HB3 sing N N 146 ASN CG OD1 doub N N 147 ASN CG ND2 sing N N 148 ASN ND2 HD21 sing N N 149 ASN ND2 HD22 sing N N 150 ASN OXT HXT sing N N 151 ASP N CA sing N N 152 ASP N H sing N N 153 ASP N H2 sing N N 154 ASP CA C sing N N 155 ASP CA CB sing N N 156 ASP CA HA sing N N 157 ASP C O doub N N 158 ASP C OXT sing N N 159 ASP CB CG sing N N 160 ASP CB HB2 sing N N 161 ASP CB HB3 sing N N 162 ASP CG OD1 doub N N 163 ASP CG OD2 sing N N 164 ASP OD2 HD2 sing N N 165 ASP OXT HXT sing N N 166 CYS N CA sing N N 167 CYS N H sing N N 168 CYS N H2 sing N N 169 CYS CA C sing N N 170 CYS CA CB sing N N 171 CYS CA HA sing N N 172 CYS C O doub N N 173 CYS C OXT sing N N 174 CYS CB SG sing N N 175 CYS CB HB2 sing N N 176 CYS CB HB3 sing N N 177 CYS SG HG sing N N 178 CYS OXT HXT sing N N 179 GLN N CA sing N N 180 GLN N H sing N N 181 GLN N H2 sing N N 182 GLN CA C sing N N 183 GLN CA CB sing N N 184 GLN CA HA sing N N 185 GLN C O doub N N 186 GLN C OXT sing N N 187 GLN CB CG sing N N 188 GLN CB HB2 sing N N 189 GLN CB HB3 sing N N 190 GLN CG CD sing N N 191 GLN CG HG2 sing N N 192 GLN CG HG3 sing N N 193 GLN CD OE1 doub N N 194 GLN CD NE2 sing N N 195 GLN NE2 HE21 sing N N 196 GLN NE2 HE22 sing N N 197 GLN OXT HXT sing N N 198 GLU N CA sing N N 199 GLU N H sing N N 200 GLU N H2 sing N N 201 GLU CA C sing N N 202 GLU CA CB sing N N 203 GLU CA HA sing N N 204 GLU C O doub N N 205 GLU C OXT sing N N 206 GLU CB CG sing N N 207 GLU CB HB2 sing N N 208 GLU CB HB3 sing N N 209 GLU CG CD sing N N 210 GLU CG HG2 sing N N 211 GLU CG HG3 sing N N 212 GLU CD OE1 doub N N 213 GLU CD OE2 sing N N 214 GLU OE2 HE2 sing N N 215 GLU OXT HXT sing N N 216 GLY N CA sing N N 217 GLY N H sing N N 218 GLY N H2 sing N N 219 GLY CA C sing N N 220 GLY CA HA2 sing N N 221 GLY CA HA3 sing N N 222 GLY C O doub N N 223 GLY C OXT sing N N 224 GLY OXT HXT sing N N 225 HIS N CA sing N N 226 HIS N H sing N N 227 HIS N H2 sing N N 228 HIS CA C sing N N 229 HIS CA CB sing N N 230 HIS CA HA sing N N 231 HIS C O doub N N 232 HIS C OXT sing N N 233 HIS CB CG sing N N 234 HIS CB HB2 sing N N 235 HIS CB HB3 sing N N 236 HIS CG ND1 sing Y N 237 HIS CG CD2 doub Y N 238 HIS ND1 CE1 doub Y N 239 HIS ND1 HD1 sing N N 240 HIS CD2 NE2 sing Y N 241 HIS CD2 HD2 sing N N 242 HIS CE1 NE2 sing Y N 243 HIS CE1 HE1 sing N N 244 HIS NE2 HE2 sing N N 245 HIS OXT HXT sing N N 246 ILE N CA sing N N 247 ILE N H sing N N 248 ILE N H2 sing N N 249 ILE CA C sing N N 250 ILE CA CB sing N N 251 ILE CA HA sing N N 252 ILE C O doub N N 253 ILE C OXT sing N N 254 ILE CB CG1 sing N N 255 ILE CB CG2 sing N N 256 ILE CB HB sing N N 257 ILE CG1 CD1 sing N N 258 ILE CG1 HG12 sing N N 259 ILE CG1 HG13 sing N N 260 ILE CG2 HG21 sing N N 261 ILE CG2 HG22 sing N N 262 ILE CG2 HG23 sing N N 263 ILE CD1 HD11 sing N N 264 ILE CD1 HD12 sing N N 265 ILE CD1 HD13 sing N N 266 ILE OXT HXT sing N N 267 LEU N CA sing N N 268 LEU N H sing N N 269 LEU N H2 sing N N 270 LEU CA C sing N N 271 LEU CA CB sing N N 272 LEU CA HA sing N N 273 LEU C O doub N N 274 LEU C OXT sing N N 275 LEU CB CG sing N N 276 LEU CB HB2 sing N N 277 LEU CB HB3 sing N N 278 LEU CG CD1 sing N N 279 LEU CG CD2 sing N N 280 LEU CG HG sing N N 281 LEU CD1 HD11 sing N N 282 LEU CD1 HD12 sing N N 283 LEU CD1 HD13 sing N N 284 LEU CD2 HD21 sing N N 285 LEU CD2 HD22 sing N N 286 LEU CD2 HD23 sing N N 287 LEU OXT HXT sing N N 288 LYS N CA sing N N 289 LYS N H sing N N 290 LYS N H2 sing N N 291 LYS CA C sing N N 292 LYS CA CB sing N N 293 LYS CA HA sing N N 294 LYS C O doub N N 295 LYS C OXT sing N N 296 LYS CB CG sing N N 297 LYS CB HB2 sing N N 298 LYS CB HB3 sing N N 299 LYS CG CD sing N N 300 LYS CG HG2 sing N N 301 LYS CG HG3 sing N N 302 LYS CD CE sing N N 303 LYS CD HD2 sing N N 304 LYS CD HD3 sing N N 305 LYS CE NZ sing N N 306 LYS CE HE2 sing N N 307 LYS CE HE3 sing N N 308 LYS NZ HZ1 sing N N 309 LYS NZ HZ2 sing N N 310 LYS NZ HZ3 sing N N 311 LYS OXT HXT sing N N 312 MET N CA sing N N 313 MET N H sing N N 314 MET N H2 sing N N 315 MET CA C sing N N 316 MET CA CB sing N N 317 MET CA HA sing N N 318 MET C O doub N N 319 MET C OXT sing N N 320 MET CB CG sing N N 321 MET CB HB2 sing N N 322 MET CB HB3 sing N N 323 MET CG SD sing N N 324 MET CG HG2 sing N N 325 MET CG HG3 sing N N 326 MET SD CE sing N N 327 MET CE HE1 sing N N 328 MET CE HE2 sing N N 329 MET CE HE3 sing N N 330 MET OXT HXT sing N N 331 PHE N CA sing N N 332 PHE N H sing N N 333 PHE N H2 sing N N 334 PHE CA C sing N N 335 PHE CA CB sing N N 336 PHE CA HA sing N N 337 PHE C O doub N N 338 PHE C OXT sing N N 339 PHE CB CG sing N N 340 PHE CB HB2 sing N N 341 PHE CB HB3 sing N N 342 PHE CG CD1 doub Y N 343 PHE CG CD2 sing Y N 344 PHE CD1 CE1 sing Y N 345 PHE CD1 HD1 sing N N 346 PHE CD2 CE2 doub Y N 347 PHE CD2 HD2 sing N N 348 PHE CE1 CZ doub Y N 349 PHE CE1 HE1 sing N N 350 PHE CE2 CZ sing Y N 351 PHE CE2 HE2 sing N N 352 PHE CZ HZ sing N N 353 PHE OXT HXT sing N N 354 PRO N CA sing N N 355 PRO N CD sing N N 356 PRO N H sing N N 357 PRO CA C sing N N 358 PRO CA CB sing N N 359 PRO CA HA sing N N 360 PRO C O doub N N 361 PRO C OXT sing N N 362 PRO CB CG sing N N 363 PRO CB HB2 sing N N 364 PRO CB HB3 sing N N 365 PRO CG CD sing N N 366 PRO CG HG2 sing N N 367 PRO CG HG3 sing N N 368 PRO CD HD2 sing N N 369 PRO CD HD3 sing N N 370 PRO OXT HXT sing N N 371 SER N CA sing N N 372 SER N H sing N N 373 SER N H2 sing N N 374 SER CA C sing N N 375 SER CA CB sing N N 376 SER CA HA sing N N 377 SER C O doub N N 378 SER C OXT sing N N 379 SER CB OG sing N N 380 SER CB HB2 sing N N 381 SER CB HB3 sing N N 382 SER OG HG sing N N 383 SER OXT HXT sing N N 384 THR N CA sing N N 385 THR N H sing N N 386 THR N H2 sing N N 387 THR CA C sing N N 388 THR CA CB sing N N 389 THR CA HA sing N N 390 THR C O doub N N 391 THR C OXT sing N N 392 THR CB OG1 sing N N 393 THR CB CG2 sing N N 394 THR CB HB sing N N 395 THR OG1 HG1 sing N N 396 THR CG2 HG21 sing N N 397 THR CG2 HG22 sing N N 398 THR CG2 HG23 sing N N 399 THR OXT HXT sing N N 400 TYR N CA sing N N 401 TYR N H sing N N 402 TYR N H2 sing N N 403 TYR CA C sing N N 404 TYR CA CB sing N N 405 TYR CA HA sing N N 406 TYR C O doub N N 407 TYR C OXT sing N N 408 TYR CB CG sing N N 409 TYR CB HB2 sing N N 410 TYR CB HB3 sing N N 411 TYR CG CD1 doub Y N 412 TYR CG CD2 sing Y N 413 TYR CD1 CE1 sing Y N 414 TYR CD1 HD1 sing N N 415 TYR CD2 CE2 doub Y N 416 TYR CD2 HD2 sing N N 417 TYR CE1 CZ doub Y N 418 TYR CE1 HE1 sing N N 419 TYR CE2 CZ sing Y N 420 TYR CE2 HE2 sing N N 421 TYR CZ OH sing N N 422 TYR OH HH sing N N 423 TYR OXT HXT sing N N 424 VAL N CA sing N N 425 VAL N H sing N N 426 VAL N H2 sing N N 427 VAL CA C sing N N 428 VAL CA CB sing N N 429 VAL CA HA sing N N 430 VAL C O doub N N 431 VAL C OXT sing N N 432 VAL CB CG1 sing N N 433 VAL CB CG2 sing N N 434 VAL CB HB sing N N 435 VAL CG1 HG11 sing N N 436 VAL CG1 HG12 sing N N 437 VAL CG1 HG13 sing N N 438 VAL CG2 HG21 sing N N 439 VAL CG2 HG22 sing N N 440 VAL CG2 HG23 sing N N 441 VAL OXT HXT sing N N 442 # _em_admin.current_status REL _em_admin.deposition_date 2025-11-01 _em_admin.deposition_site PDBJ _em_admin.entry_id 9XHJ _em_admin.last_update 2026-11-04 _em_admin.map_release_date 2026-11-04 _em_admin.title 'Cryo-EM structure of deep sight fluorescence protein dsFP11' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 562 _em_entity_assembly_naturalsource.organism 'Escherichia coli' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.20.1_4487 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9XHJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #