HEADER PROTEIN FIBRIL 02-NOV-25 9XHV TITLE THE CRYO-EM STRUCTURE OF F-PI2620 BOUND TAU PHF FIBRIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM PNS-TAU OF MICROTUBULE-ASSOCIATED PROTEIN TAU; COMPND 3 CHAIN: A, B, E, F, G, H, I, J, K, L; COMPND 4 SYNONYM: NEUROFIBRILLARY TANGLE PROTEIN,PAIRED HELICAL FILAMENT-TAU, COMPND 5 PHF-TAU SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR Q.Y.ZHAO,T.Y.CAO,C.LIU,D.LI REVDAT 1 04-NOV-26 9XHV 0 JRNL AUTH Q.Y.ZHAO,T.Y.CAO,C.LIU,D.LI JRNL TITL THE CRYO-EM STRUCTURE OF F-PI2620 BOUND TAU PHF FIBRIL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 20783 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9XHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 07-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300065429. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : THE COMPLEX OF F-PI2620 WITH REMARK 245 TAU PHF FIBRIL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOCONTINUUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G, H, I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 347 146.88 -173.77 REMARK 500 ASP A 348 70.00 57.85 REMARK 500 ARG A 349 30.44 76.43 REMARK 500 VAL A 363 70.90 -119.03 REMARK 500 LYS B 347 146.86 -173.78 REMARK 500 ARG B 349 30.45 76.41 REMARK 500 VAL B 363 70.85 -119.04 REMARK 500 LYS E 347 146.90 -173.74 REMARK 500 ARG E 349 30.54 76.35 REMARK 500 VAL E 363 70.86 -119.03 REMARK 500 LYS F 347 146.88 -173.76 REMARK 500 ASP F 348 70.00 57.87 REMARK 500 ARG F 349 30.62 76.36 REMARK 500 VAL F 363 70.88 -119.04 REMARK 500 LYS G 347 146.86 -173.69 REMARK 500 ARG G 349 30.60 76.36 REMARK 500 VAL G 363 70.88 -119.01 REMARK 500 LYS H 347 146.84 -173.73 REMARK 500 ASP H 348 70.01 57.84 REMARK 500 ARG H 349 30.52 76.42 REMARK 500 VAL H 363 70.94 -118.98 REMARK 500 LYS I 347 146.91 -173.81 REMARK 500 ARG I 349 30.55 76.43 REMARK 500 VAL I 363 70.91 -118.98 REMARK 500 LYS J 347 146.89 -173.67 REMARK 500 ARG J 349 30.55 76.40 REMARK 500 VAL J 363 70.88 -118.93 REMARK 500 LYS K 347 146.84 -173.66 REMARK 500 ARG K 349 30.56 76.32 REMARK 500 VAL K 363 70.83 -119.01 REMARK 500 LYS L 347 146.82 -173.78 REMARK 500 ARG L 349 30.60 76.35 REMARK 500 VAL L 363 70.79 -118.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-66887 RELATED DB: EMDB REMARK 900 THE CRYO-EM STRUCTURE OF F-PI2620 BOUND TAU PHF FIBRIL DBREF 9XHV A 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV B 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV E 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV F 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV G 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV H 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV I 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV J 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV K 304 380 UNP P10636 TAU_HUMAN 621 697 DBREF 9XHV L 304 380 UNP P10636 TAU_HUMAN 621 697 SEQRES 1 A 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 A 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 A 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 A 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 A 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 A 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 B 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 B 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 B 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 B 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 B 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 B 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 E 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 E 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 E 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 E 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 E 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 E 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 F 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 F 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 F 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 F 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 F 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 F 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 G 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 G 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 G 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 G 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 G 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 G 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 H 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 H 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 H 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 H 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 H 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 H 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 I 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 I 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 I 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 I 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 I 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 I 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 J 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 J 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 J 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 J 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 J 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 J 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 K 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 K 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 K 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 K 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 K 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 K 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SEQRES 1 L 77 GLY SER VAL GLN ILE VAL TYR LYS PRO VAL ASP LEU SER SEQRES 2 L 77 LYS VAL THR SER LYS CYS GLY SER LEU GLY ASN ILE HIS SEQRES 3 L 77 HIS LYS PRO GLY GLY GLY GLN VAL GLU VAL LYS SER GLU SEQRES 4 L 77 LYS LEU ASP PHE LYS ASP ARG VAL GLN SER LYS ILE GLY SEQRES 5 L 77 SER LEU ASP ASN ILE THR HIS VAL PRO GLY GLY GLY ASN SEQRES 6 L 77 LYS LYS ILE GLU THR HIS LYS LEU THR PHE ARG GLU SHEET 1 AA1 5 VAL A 306 ILE A 308 0 SHEET 2 AA1 5 VAL E 306 ILE E 308 1 O GLN E 307 N ILE A 308 SHEET 3 AA1 5 VAL I 306 ILE I 308 1 O GLN I 307 N ILE E 308 SHEET 4 AA1 5 VAL G 306 ILE G 308 1 N GLN G 307 O ILE I 308 SHEET 5 AA1 5 VAL K 306 ILE K 308 1 O GLN K 307 N ILE G 308 SHEET 1 AA2 5 VAL A 337 LYS A 340 0 SHEET 2 AA2 5 VAL E 337 LYS E 340 1 O LYS E 340 N VAL A 339 SHEET 3 AA2 5 VAL I 337 LYS I 340 1 O GLU I 338 N VAL E 339 SHEET 4 AA2 5 VAL G 337 LYS G 340 1 N GLU G 338 O VAL I 339 SHEET 5 AA2 5 VAL K 337 LYS K 340 1 O GLU K 338 N VAL G 339 SHEET 1 AA3 5 LYS A 343 ASP A 345 0 SHEET 2 AA3 5 LYS E 343 ASP E 345 1 O LYS E 343 N LEU A 344 SHEET 3 AA3 5 LYS I 343 ASP I 345 1 O LYS I 343 N LEU E 344 SHEET 4 AA3 5 LYS G 343 ASP G 345 1 N LYS G 343 O LEU I 344 SHEET 5 AA3 5 LYS K 343 ASP K 345 1 O LYS K 343 N LEU G 344 SHEET 1 AA4 5 VAL B 306 ILE B 308 0 SHEET 2 AA4 5 VAL F 306 ILE F 308 1 O GLN F 307 N ILE B 308 SHEET 3 AA4 5 VAL J 306 ILE J 308 1 O GLN J 307 N ILE F 308 SHEET 4 AA4 5 VAL H 306 ILE H 308 1 N GLN H 307 O ILE J 308 SHEET 5 AA4 5 VAL L 306 ILE L 308 1 O GLN L 307 N ILE H 308 SHEET 1 AA5 5 VAL B 337 LYS B 340 0 SHEET 2 AA5 5 VAL F 337 LYS F 340 1 O GLU F 338 N VAL B 339 SHEET 3 AA5 5 VAL J 337 LYS J 340 1 O GLU J 338 N VAL F 339 SHEET 4 AA5 5 VAL H 337 LYS H 340 1 N GLU H 338 O VAL J 339 SHEET 5 AA5 5 VAL L 337 LYS L 340 1 O GLU L 338 N VAL H 339 SHEET 1 AA6 5 LYS B 343 ASP B 345 0 SHEET 2 AA6 5 LYS F 343 ASP F 345 1 O LYS F 343 N LEU B 344 SHEET 3 AA6 5 LYS J 343 ASP J 345 1 O LYS J 343 N LEU F 344 SHEET 4 AA6 5 LYS H 343 ASP H 345 1 N LYS H 343 O LEU J 344 SHEET 5 AA6 5 LYS L 343 ASP L 345 1 O LYS L 343 N LEU H 344 SHEET 1 AA7 2 HIS E 374 LYS E 375 0 SHEET 2 AA7 2 HIS I 374 LYS I 375 1 O LYS I 375 N HIS E 374 SHEET 1 AA8 2 HIS F 374 LYS F 375 0 SHEET 2 AA8 2 HIS J 374 LYS J 375 1 O LYS J 375 N HIS F 374 SHEET 1 AA9 2 HIS G 374 LYS G 375 0 SHEET 2 AA9 2 HIS K 374 LYS K 375 1 O LYS K 375 N HIS G 374 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 148 0 0 0 36 0 0 6 5870 10 0 60 END