HEADER OXIDOREDUCTASE 11-NOV-25 9XMK TITLE CRYSTAL STRUCTURE OF IPHB FROM COMAMONAS TESTOSTERONI KF1 IN COMPLEX TITLE 2 WITH NADP AND 3,4-DIHYDROXYBENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COMAMONAS TESTOSTERONI KF-1; SOURCE 3 ORGANISM_TAXID: 399795; SOURCE 4 STRAIN: DSM 14576 / KF-1; SOURCE 5 GENE: CTESDRAFT_PD2137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEHYDROGENASE, BACTERIAL PROTEIN, OXIDOREDUCTASE, SDR EXPDTA X-RAY DIFFRACTION AUTHOR K.JANGID,M.SHARMA,J.K.MAHTO,P.KUMAR REVDAT 1 14-OCT-26 9XMK 0 JRNL AUTH M.SHARMA,J.K.MAHTO,P.KUMAR JRNL TITL CRYSTAL STRUCTURE OF IPHB FROM COMAMONAS TESTOSTERONI KF1 IN JRNL TITL 2 COMPLEX WITH NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 65908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 26.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.1630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.148 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3625 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3409 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4927 ; 1.647 ; 1.782 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7773 ; 0.553 ; 1.726 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 6.614 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ; 5.731 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;12.507 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4439 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 858 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 757 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 208 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1805 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 126 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 1.993 ; 1.072 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1928 ; 1.992 ; 1.071 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2403 ; 2.834 ; 1.909 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2404 ; 2.836 ; 1.909 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 3.965 ; 1.533 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1698 ; 3.964 ; 1.535 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2524 ; 5.757 ; 2.586 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2525 ; 5.756 ; 2.588 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 259 REMARK 3 RESIDUE RANGE : A 301 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -13.784 -54.806 12.612 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.0131 REMARK 3 T33: 0.0242 T12: -0.0150 REMARK 3 T13: -0.0112 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.0430 L22: 1.2648 REMARK 3 L33: 0.6318 L12: -0.0688 REMARK 3 L13: 0.0083 L23: 0.1567 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.0730 S13: -0.0604 REMARK 3 S21: -0.1325 S22: 0.0225 S23: 0.1166 REMARK 3 S31: 0.0709 S32: -0.0049 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 259 REMARK 3 ORIGIN FOR THE GROUP (A): -14.513 -21.892 17.366 REMARK 3 T TENSOR REMARK 3 T11: 0.0370 T22: 0.0168 REMARK 3 T33: 0.0670 T12: 0.0190 REMARK 3 T13: -0.0104 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.5376 L22: 1.1442 REMARK 3 L33: 0.6927 L12: 0.1981 REMARK 3 L13: -0.0694 L23: 0.1112 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: -0.0268 S13: 0.1238 REMARK 3 S21: -0.0036 S22: -0.0028 S23: 0.2027 REMARK 3 S31: -0.0959 S32: -0.0907 S33: 0.0285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9XMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300065547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 26.571 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.05650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.05650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.35150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.13750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.35150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.13750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.05650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.35150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.13750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.05650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.35150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.13750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 37.05650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 204 REMARK 465 GLY A 205 REMARK 465 LYS A 206 REMARK 465 SER A 207 REMARK 465 VAL A 208 REMARK 465 GLU A 209 REMARK 465 GLN A 210 REMARK 465 LEU A 211 REMARK 465 ARG A 212 REMARK 465 THR A 213 REMARK 465 GLU A 214 REMARK 465 ARG A 215 REMARK 465 LYS A 216 REMARK 465 ASP A 217 REMARK 465 HIS B 197 REMARK 465 VAL B 198 REMARK 465 GLY B 199 REMARK 465 ARG B 200 REMARK 465 ALA B 201 REMARK 465 ARG B 202 REMARK 465 ASN B 203 REMARK 465 ALA B 204 REMARK 465 GLY B 205 REMARK 465 LYS B 206 REMARK 465 SER B 207 REMARK 465 VAL B 208 REMARK 465 GLU B 209 REMARK 465 GLN B 210 REMARK 465 LEU B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET B 97 CG - SD - CE ANGL. DEV. = -22.9 DEGREES REMARK 500 MET B 251 CG - SD - CE ANGL. DEV. = -12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 145 -137.27 -100.64 REMARK 500 ALA A 201 43.65 -83.23 REMARK 500 ASP A 253 12.38 -141.69 REMARK 500 SER B 145 -131.72 -103.02 REMARK 500 ASP B 195 98.33 -64.88 REMARK 500 THR B 218 36.83 -97.68 REMARK 500 ASP B 253 15.64 -140.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 9XMK A 4 259 UNP B7WRK6 B7WRK6_COMTK 4 259 DBREF 9XMK B 4 259 UNP B7WRK6 B7WRK6_COMTK 4 259 SEQRES 1 A 256 SER ARG MET ALA GLY ARG THR ALA LEU ILE THR GLY ALA SEQRES 2 A 256 GLY ALA GLY ILE GLY ALA ALA ALA SER HIS LEU PHE CYS SEQRES 3 A 256 LYS GLU GLY ALA ALA VAL LEU MET VAL ASP ALA ASN ALA SEQRES 4 A 256 GLU ALA LEU GLU ARG THR ARG GLU ALA ILE LEU GLN ALA SEQRES 5 A 256 VAL PRO GLY ALA ARG LEU ALA CYS VAL MET ALA ASP VAL SEQRES 6 A 256 SER ASP GLU SER ALA ALA ALA ALA ALA VAL GLY GLN CYS SEQRES 7 A 256 VAL GLN GLN TRP GLY GLY LEU ASP THR LEU VAL ASN ASN SEQRES 8 A 256 ALA ALA MET ARG ASN TYR SER ALA ALA ALA ASP ALA THR SEQRES 9 A 256 ALA ALA GLU TRP GLN ALA MET VAL GLY VAL ASN LEU VAL SEQRES 10 A 256 GLY MET SER ASN TYR CYS ARG ALA ALA LEU PRO ALA LEU SEQRES 11 A 256 ARG GLN SER GLY THR GLY SER ILE VAL ASN VAL SER SER SEQRES 12 A 256 CYS TYR ALA VAL THR GLY ARG LYS GLY MET ALA LEU TYR SEQRES 13 A 256 ASP ALA THR LYS ALA ALA GLN LEU ALA TYR THR ARG SER SEQRES 14 A 256 LEU ALA PHE GLU GLU ALA ALA HIS GLY VAL ARG ALA ASN SEQRES 15 A 256 ALA VAL CYS PRO GLY SER THR LEU THR ASP PHE HIS VAL SEQRES 16 A 256 GLY ARG ALA ARG ASN ALA GLY LYS SER VAL GLU GLN LEU SEQRES 17 A 256 ARG THR GLU ARG LYS ASP THR SER LEU ILE GLY ARG TRP SEQRES 18 A 256 ALA SER PRO GLU GLU ILE ALA TRP PRO ILE PHE TRP LEU SEQRES 19 A 256 ALA SER ARG GLU ALA SER PHE ILE THR GLY THR THR LEU SEQRES 20 A 256 MET VAL ASP GLY GLY LEU HIS ILE MET SEQRES 1 B 256 SER ARG MET ALA GLY ARG THR ALA LEU ILE THR GLY ALA SEQRES 2 B 256 GLY ALA GLY ILE GLY ALA ALA ALA SER HIS LEU PHE CYS SEQRES 3 B 256 LYS GLU GLY ALA ALA VAL LEU MET VAL ASP ALA ASN ALA SEQRES 4 B 256 GLU ALA LEU GLU ARG THR ARG GLU ALA ILE LEU GLN ALA SEQRES 5 B 256 VAL PRO GLY ALA ARG LEU ALA CYS VAL MET ALA ASP VAL SEQRES 6 B 256 SER ASP GLU SER ALA ALA ALA ALA ALA VAL GLY GLN CYS SEQRES 7 B 256 VAL GLN GLN TRP GLY GLY LEU ASP THR LEU VAL ASN ASN SEQRES 8 B 256 ALA ALA MET ARG ASN TYR SER ALA ALA ALA ASP ALA THR SEQRES 9 B 256 ALA ALA GLU TRP GLN ALA MET VAL GLY VAL ASN LEU VAL SEQRES 10 B 256 GLY MET SER ASN TYR CYS ARG ALA ALA LEU PRO ALA LEU SEQRES 11 B 256 ARG GLN SER GLY THR GLY SER ILE VAL ASN VAL SER SER SEQRES 12 B 256 CYS TYR ALA VAL THR GLY ARG LYS GLY MET ALA LEU TYR SEQRES 13 B 256 ASP ALA THR LYS ALA ALA GLN LEU ALA TYR THR ARG SER SEQRES 14 B 256 LEU ALA PHE GLU GLU ALA ALA HIS GLY VAL ARG ALA ASN SEQRES 15 B 256 ALA VAL CYS PRO GLY SER THR LEU THR ASP PHE HIS VAL SEQRES 16 B 256 GLY ARG ALA ARG ASN ALA GLY LYS SER VAL GLU GLN LEU SEQRES 17 B 256 ARG THR GLU ARG LYS ASP THR SER LEU ILE GLY ARG TRP SEQRES 18 B 256 ALA SER PRO GLU GLU ILE ALA TRP PRO ILE PHE TRP LEU SEQRES 19 B 256 ALA SER ARG GLU ALA SER PHE ILE THR GLY THR THR LEU SEQRES 20 B 256 MET VAL ASP GLY GLY LEU HIS ILE MET HET NAP A 301 48 HET DHB A 302 11 HET EDO A 303 4 HET EDO B 301 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM DHB 3,4-DIHYDROXYBENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 DHB C7 H6 O4 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *168(H2 O) HELIX 1 AA1 ALA A 18 GLU A 31 1 14 HELIX 2 AA2 ASN A 41 VAL A 56 1 16 HELIX 3 AA3 ASP A 70 GLY A 86 1 17 HELIX 4 AA4 ALA A 102 ALA A 106 5 5 HELIX 5 AA5 THR A 107 LEU A 119 1 13 HELIX 6 AA6 LEU A 119 GLY A 137 1 19 HELIX 7 AA7 SER A 146 VAL A 150 5 5 HELIX 8 AA8 MET A 156 ALA A 178 1 23 HELIX 9 AA9 ALA A 179 GLY A 181 5 3 HELIX 10 AB1 THR A 194 ARG A 200 1 7 HELIX 11 AB2 SER A 226 SER A 239 1 14 HELIX 12 AB3 ARG A 240 SER A 243 5 4 HELIX 13 AB4 GLY A 255 MET A 259 5 5 HELIX 14 AB5 ALA B 18 GLU B 31 1 14 HELIX 15 AB6 ASN B 41 VAL B 56 1 16 HELIX 16 AB7 ASP B 70 GLY B 86 1 17 HELIX 17 AB8 ALA B 102 ALA B 106 5 5 HELIX 18 AB9 THR B 107 LEU B 119 1 13 HELIX 19 AC1 LEU B 119 GLY B 137 1 19 HELIX 20 AC2 SER B 146 VAL B 150 5 5 HELIX 21 AC3 MET B 156 ALA B 178 1 23 HELIX 22 AC4 ALA B 179 GLY B 181 5 3 HELIX 23 AC5 PRO B 227 SER B 239 1 13 HELIX 24 AC6 ARG B 240 SER B 243 5 4 HELIX 25 AC7 GLY B 255 MET B 259 5 5 SHEET 1 AA1 7 LEU A 61 MET A 65 0 SHEET 2 AA1 7 ALA A 34 ASP A 39 1 N MET A 37 O ALA A 62 SHEET 3 AA1 7 THR A 10 THR A 14 1 N ILE A 13 O VAL A 38 SHEET 4 AA1 7 THR A 90 ASN A 93 1 O VAL A 92 N LEU A 12 SHEET 5 AA1 7 SER A 140 VAL A 144 1 O VAL A 144 N ASN A 93 SHEET 6 AA1 7 ARG A 183 PRO A 189 1 O ASN A 185 N ASN A 143 SHEET 7 AA1 7 THR A 249 VAL A 252 1 O LEU A 250 N ALA A 186 SHEET 1 AA2 7 ARG B 60 MET B 65 0 SHEET 2 AA2 7 ALA B 34 ASP B 39 1 N MET B 37 O ALA B 62 SHEET 3 AA2 7 THR B 10 THR B 14 1 N ALA B 11 O ALA B 34 SHEET 4 AA2 7 THR B 90 ASN B 93 1 O VAL B 92 N LEU B 12 SHEET 5 AA2 7 SER B 140 VAL B 144 1 O VAL B 142 N LEU B 91 SHEET 6 AA2 7 ARG B 183 PRO B 189 1 O ASN B 185 N ASN B 143 SHEET 7 AA2 7 THR B 249 VAL B 252 1 O LEU B 250 N ALA B 186 CRYST1 78.703 152.275 74.113 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013493 0.00000 CONECT 3506 3507 3508 3509 3528 CONECT 3507 3506 CONECT 3508 3506 CONECT 3509 3506 3510 CONECT 3510 3509 3511 CONECT 3511 3510 3512 3513 CONECT 3512 3511 3517 CONECT 3513 3511 3514 3515 CONECT 3514 3513 CONECT 3515 3513 3516 3517 CONECT 3516 3515 3550 CONECT 3517 3512 3515 3518 CONECT 3518 3517 3519 3527 CONECT 3519 3518 3520 CONECT 3520 3519 3521 CONECT 3521 3520 3522 3527 CONECT 3522 3521 3523 3524 CONECT 3523 3522 CONECT 3524 3522 3525 CONECT 3525 3524 3526 CONECT 3526 3525 3527 CONECT 3527 3518 3521 3526 CONECT 3528 3506 3529 CONECT 3529 3528 3530 3531 3532 CONECT 3530 3529 CONECT 3531 3529 CONECT 3532 3529 3533 CONECT 3533 3532 3534 CONECT 3534 3533 3535 3536 CONECT 3535 3534 3540 CONECT 3536 3534 3537 3538 CONECT 3537 3536 CONECT 3538 3536 3539 3540 CONECT 3539 3538 CONECT 3540 3535 3538 3541 CONECT 3541 3540 3542 3549 CONECT 3542 3541 3543 CONECT 3543 3542 3544 3547 CONECT 3544 3543 3545 3546 CONECT 3545 3544 CONECT 3546 3544 CONECT 3547 3543 3548 CONECT 3548 3547 3549 CONECT 3549 3541 3548 CONECT 3550 3516 3551 3552 3553 CONECT 3551 3550 CONECT 3552 3550 CONECT 3553 3550 CONECT 3554 3555 3561 3562 CONECT 3555 3554 3556 CONECT 3556 3555 3557 3558 CONECT 3557 3556 CONECT 3558 3556 3559 3560 CONECT 3559 3558 CONECT 3560 3558 3561 CONECT 3561 3554 3560 CONECT 3562 3554 3563 3564 CONECT 3563 3562 CONECT 3564 3562 CONECT 3565 3566 3567 CONECT 3566 3565 CONECT 3567 3565 3568 CONECT 3568 3567 CONECT 3569 3570 3571 CONECT 3570 3569 CONECT 3571 3569 3572 CONECT 3572 3571 MASTER 376 0 4 25 14 0 0 6 3738 2 67 40 END