HEADER IMMUNE SYSTEM 17-NOV-25 9XQ9 TITLE THE STRUCTURE OF PLDB-PA5088 COMPLEX STATE_1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLD PHOSPHODIESTERASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SEL1 REPEAT FAMILY PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PA14_67220; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 9 ORGANISM_TAXID: 287; SOURCE 10 GENE: PA5088; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR J.W.YANG,X.Y.YANG,Z.Q.LI REVDAT 1 30-SEP-26 9XQ9 0 JRNL AUTH X.YANG,J.YANG,H.WANG,X.LIU,Z.LI JRNL TITL STRUCTURAL BASIS OF COOPERATIVE NEUTRALIZATION OF THE PLDB JRNL TITL 2 TOXIN BY IMMUNITY PROTEINS IN PSEUDOMONAS AERUGINOSA. JRNL REF COMMUN BIOL 2026 JRNL REFN ESSN 2399-3642 JRNL PMID 42448982 JRNL DOI 10.1038/S42003-026-10681-3 REMARK 2 REMARK 2 RESOLUTION. 3.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.590 REMARK 3 NUMBER OF PARTICLES : 213711 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9XQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 20-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300065520. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF PLDB-PA5088 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 108 REMARK 465 LEU A 109 REMARK 465 ALA A 110 REMARK 465 ARG A 111 REMARK 465 LEU A 112 REMARK 465 LYS A 113 REMARK 465 GLU A 114 REMARK 465 ASN A 115 REMARK 465 THR A 116 REMARK 465 ILE A 117 REMARK 465 PRO A 118 REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 GLY A 121 REMARK 465 VAL A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 THR A 128 REMARK 465 TRP A 129 REMARK 465 ALA A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 VAL A 134 REMARK 465 ALA A 135 REMARK 465 SER A 136 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 ALA A 139 REMARK 465 VAL A 140 REMARK 465 ASP A 141 REMARK 465 ASN A 142 REMARK 465 GLU A 143 REMARK 465 VAL A 144 REMARK 465 LEU A 145 REMARK 465 ARG A 146 REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 GLN A 149 REMARK 465 ARG A 150 REMARK 465 ARG A 151 REMARK 465 GLN A 152 REMARK 465 HIS A 153 REMARK 465 ASN A 154 REMARK 465 LEU A 155 REMARK 465 ASN A 156 REMARK 465 LEU A 157 REMARK 465 ILE A 158 REMARK 465 ALA A 159 REMARK 465 ARG A 160 REMARK 465 GLN A 161 REMARK 465 GLN A 162 REMARK 465 GLU A 163 REMARK 465 ALA A 164 REMARK 465 LEU A 165 REMARK 465 GLU A 166 REMARK 465 ARG A 167 REMARK 465 SER A 168 REMARK 465 GLU A 169 REMARK 465 ARG A 170 REMARK 465 LEU A 171 REMARK 465 HIS A 172 REMARK 465 ARG A 173 REMARK 465 GLU A 174 REMARK 465 GLY A 175 REMARK 465 ARG A 176 REMARK 465 LEU A 177 REMARK 465 PRO A 178 REMARK 465 SER A 179 REMARK 465 PHE A 180 REMARK 465 ASP A 181 REMARK 465 PRO A 182 REMARK 465 ARG A 183 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 ALA A 186 REMARK 465 HIS A 187 REMARK 465 ALA A 188 REMARK 465 ARG A 189 REMARK 465 ALA A 190 REMARK 465 ARG A 191 REMARK 465 ILE A 192 REMARK 465 ALA A 193 REMARK 465 GLU A 194 REMARK 465 LEU A 195 REMARK 465 GLU A 196 REMARK 465 ALA A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 ALA A 200 REMARK 465 GLU A 201 REMARK 465 ILE A 202 REMARK 465 GLN A 203 REMARK 465 ARG A 204 REMARK 465 THR A 205 REMARK 465 LEU A 206 REMARK 465 ASP A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 GLU A 210 REMARK 465 ALA A 211 REMARK 465 GLN A 212 REMARK 465 GLY A 213 REMARK 465 TYR A 214 REMARK 465 GLY A 215 REMARK 465 GLY A 216 REMARK 465 LYS A 217 REMARK 465 ARG A 218 REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 GLY A 221 REMARK 465 GLY A 222 REMARK 465 THR A 223 REMARK 465 ARG A 224 REMARK 465 GLN A 225 REMARK 465 ASP A 226 REMARK 465 PRO A 227 REMARK 465 TRP A 228 REMARK 465 GLY A 229 REMARK 465 GLN A 230 REMARK 465 ILE A 231 REMARK 465 PHE A 232 REMARK 465 THR A 233 REMARK 465 ARG A 234 REMARK 465 ASP A 235 REMARK 465 TRP A 236 REMARK 465 PHE A 237 REMARK 465 LYS A 238 REMARK 465 ALA A 239 REMARK 465 VAL A 240 REMARK 465 ARG A 241 REMARK 465 GLY A 242 REMARK 465 GLY A 243 REMARK 465 GLU A 256 REMARK 465 GLN A 257 REMARK 465 THR A 258 REMARK 465 ALA A 259 REMARK 465 ARG A 260 REMARK 465 PRO A 261 REMARK 465 VAL A 262 REMARK 465 MET A 263 REMARK 465 ASN A 264 REMARK 465 GLY A 265 REMARK 465 GLU A 266 REMARK 465 GLN A 267 REMARK 465 VAL A 268 REMARK 465 ARG A 269 REMARK 465 LEU A 270 REMARK 465 VAL A 271 REMARK 465 ASN A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 LEU A 275 REMARK 465 GLN A 276 REMARK 465 SER A 277 REMARK 465 LEU A 278 REMARK 465 ILE A 279 REMARK 465 HIS A 280 REMARK 465 LEU A 281 REMARK 465 LEU A 282 REMARK 465 ARG A 283 REMARK 465 ALA A 284 REMARK 465 ASP A 285 REMARK 465 GLY A 286 REMARK 465 ASN A 287 REMARK 465 ASP A 288 REMARK 465 ASP A 289 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 ILE A 292 REMARK 465 GLY A 293 REMARK 465 GLN A 294 REMARK 465 LEU A 295 REMARK 465 LEU A 296 REMARK 465 VAL A 297 REMARK 465 LEU A 298 REMARK 465 THR A 299 REMARK 465 GLN A 300 REMARK 465 PHE A 301 REMARK 465 ALA A 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 26 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 26 CZ3 CH2 REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 PHE A 51 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 54 CG1 CG2 REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 58 CG SD CE REMARK 470 ILE A 65 CG1 CG2 CD1 REMARK 470 ILE A 68 CG1 CG2 CD1 REMARK 470 PHE A 72 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 MET A 76 CG SD CE REMARK 470 PHE A 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 86 CG1 CG2 CD1 REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLN A 99 CG CD OE1 NE2 REMARK 470 VAL A 104 CG1 CG2 REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 MET A 308 CG SD CE REMARK 470 PHE A 321 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET A 323 CG SD CE REMARK 470 ASP A 333 CG OD1 OD2 REMARK 470 ASP A 340 CG OD1 OD2 REMARK 470 ILE A 356 CG1 CG2 CD1 REMARK 470 MET A 358 CG SD CE REMARK 470 LEU A 365 CG CD1 CD2 REMARK 470 ASP A 367 CG OD1 OD2 REMARK 470 LEU A 368 CG CD1 CD2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 371 CG OD1 ND2 REMARK 470 PHE A 372 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 373 OG REMARK 470 TRP A 376 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 376 CZ3 CH2 REMARK 470 LEU A 378 CG CD1 CD2 REMARK 470 GLU A 379 CG CD OE1 OE2 REMARK 470 TYR A 383 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 384 CG CD CE NZ REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 392 CG CD1 CD2 REMARK 470 PRO A 402 CG CD REMARK 470 VAL A 412 CG1 CG2 REMARK 470 CYS A 416 SG REMARK 470 ILE A 427 CG1 CG2 CD1 REMARK 470 LEU A 428 CG CD1 CD2 REMARK 470 GLU A 429 CG CD OE1 OE2 REMARK 470 HIS A 430 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 431 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 TYR A 443 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET A 444 CG SD CE REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 ASN A 446 CG OD1 ND2 REMARK 470 TYR A 451 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 463 CG CD OE1 NE2 REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 ARG A 468 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 478 CG1 CG2 REMARK 470 MET A 495 CG SD CE REMARK 470 LYS A 497 CG CD CE NZ REMARK 470 LEU A 499 CG CD1 CD2 REMARK 470 GLN A 501 CG CD OE1 NE2 REMARK 470 LEU A 512 CG CD1 CD2 REMARK 470 LEU A 516 CG CD1 CD2 REMARK 470 LYS A 519 CG CD CE NZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 470 ASN A 529 CG OD1 ND2 REMARK 470 LEU A 530 CG CD1 CD2 REMARK 470 HIS A 531 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 533 CG OD1 OD2 REMARK 470 TYR A 535 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 538 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 542 CG OD1 ND2 REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LEU A 547 CG CD1 CD2 REMARK 470 GLU A 548 CG CD OE1 OE2 REMARK 470 ILE A 551 CG1 CG2 CD1 REMARK 470 LEU A 554 CG CD1 CD2 REMARK 470 LYS A 557 CG CD CE NZ REMARK 470 THR A 560 OG1 CG2 REMARK 470 VAL A 563 CG1 CG2 REMARK 470 LEU A 567 CG CD1 CD2 REMARK 470 GLN A 573 CG CD OE1 NE2 REMARK 470 GLU A 574 CG CD OE1 OE2 REMARK 470 ILE A 575 CG1 CG2 CD1 REMARK 470 ASP A 586 CG OD1 OD2 REMARK 470 LYS A 587 CG CD CE NZ REMARK 470 GLN A 590 CG CD OE1 NE2 REMARK 470 LEU A 604 CG CD1 CD2 REMARK 470 ASP A 608 CG OD1 OD2 REMARK 470 PRO A 611 CG CD REMARK 470 PRO A 614 CG CD REMARK 470 ARG A 618 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 632 CG CD1 CD2 REMARK 470 ILE A 639 CG1 CG2 CD1 REMARK 470 TYR A 640 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 645 CG CD1 CD2 REMARK 470 ASN A 659 CG OD1 ND2 REMARK 470 ILE A 660 CG1 CG2 CD1 REMARK 470 ARG A 663 CG CD NE CZ NH1 NH2 REMARK 470 SER A 664 OG REMARK 470 MET A 665 CG SD CE REMARK 470 ASP A 668 CG OD1 OD2 REMARK 470 SER A 669 OG REMARK 470 MET A 684 CG SD CE REMARK 470 ARG A 685 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 688 CG CD1 CD2 REMARK 470 ARG A 695 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 703 CG OD1 ND2 REMARK 470 PHE A 704 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 707 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 707 CZ3 CH2 REMARK 470 ASN A 708 CG OD1 ND2 REMARK 470 GLN A 709 CG CD OE1 NE2 REMARK 470 MET A 711 CG SD CE REMARK 470 ASP A 712 CG OD1 OD2 REMARK 470 ASN A 714 CG OD1 ND2 REMARK 470 ARG A 730 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 738 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 740 CG CD OE1 NE2 REMARK 470 PHE B 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS B 8 SG REMARK 470 ASN B 10 CG OD1 ND2 REMARK 470 ASP B 13 CG OD1 OD2 REMARK 470 LEU B 18 CG CD1 CD2 REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 TYR B 26 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 27 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LEU B 32 CG CD1 CD2 REMARK 470 ARG B 39 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 41 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 41 CZ3 CH2 REMARK 470 ASP B 42 CG OD1 OD2 REMARK 470 VAL B 45 CG1 CG2 REMARK 470 TYR B 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 56 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 MET B 60 CG SD CE REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 SER B 65 OG REMARK 470 LEU B 66 CG CD1 CD2 REMARK 470 THR B 69 OG1 CG2 REMARK 470 LEU B 85 CG CD1 CD2 REMARK 470 GLN B 87 CG CD OE1 NE2 REMARK 470 MET B 89 CG SD CE REMARK 470 ILE B 90 CG1 CG2 CD1 REMARK 470 LEU B 92 CG CD1 CD2 REMARK 470 MET B 104 CG SD CE REMARK 470 VAL B 111 CG1 CG2 REMARK 470 PHE B 121 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO B 131 CG CD REMARK 470 PRO B 132 CG CD REMARK 470 ARG B 139 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 141 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 156 CG OD1 ND2 REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 470 MET B 172 CG SD CE REMARK 470 LEU B 189 CG CD1 CD2 REMARK 470 ASN B 196 CG OD1 ND2 REMARK 470 MET B 203 CG SD CE REMARK 470 SER B 204 OG REMARK 470 VAL B 206 CG1 CG2 REMARK 470 ASP B 208 CG OD1 OD2 REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 SER B 211 OG REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 MET B 217 CG SD CE REMARK 470 TRP B 218 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 218 CZ3 CH2 REMARK 470 ARG B 243 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 244 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 246 CG OD1 ND2 REMARK 470 LEU B 247 CG CD1 CD2 REMARK 470 HIS B 251 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 261 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 156.92 70.19 REMARK 500 ARG A 62 -33.33 -131.88 REMARK 500 ARG A 450 44.15 -140.14 REMARK 500 GLN A 507 -9.18 73.47 REMARK 500 HIS A 531 96.64 -18.18 REMARK 500 THR A 560 68.88 30.21 REMARK 500 PRO A 561 -3.68 -57.52 REMARK 500 ALA A 572 -168.40 53.99 REMARK 500 ILE A 575 67.21 -114.95 REMARK 500 ALA A 610 133.35 -39.88 REMARK 500 ASN A 741 146.84 -171.76 REMARK 500 ARG B 108 62.55 60.03 REMARK 500 ALA B 109 50.23 -95.04 REMARK 500 VAL B 144 -54.63 -126.73 REMARK 500 VAL B 177 -61.53 -92.39 REMARK 500 HIS B 179 14.42 59.81 REMARK 500 ASP B 262 122.85 -173.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-67105 RELATED DB: EMDB REMARK 900 THE STRUCTURE OF PLDB-PA5088 COMPLEX STATE_1 DBREF1 9XQ9 A 23 745 UNP A0A0H2ZIS7_PSEAB DBREF2 9XQ9 A A0A0H2ZIS7 23 745 DBREF 9XQ9 B 1 272 UNP Q9HU95 Q9HU95_PSEAE 22 293 SEQRES 1 A 723 THR LEU ASP TRP PHE ALA ASN LYS ALA PHE TYR PRO PRO SEQRES 2 A 723 ARG ALA GLY VAL HIS ILE LYS PRO LEU ILE ASN GLY GLN SEQRES 3 A 723 ALA ALA PHE ASP ALA VAL HIS ALA ALA MET GLU ALA ALA SEQRES 4 A 723 ARG HIS SER ILE ASP ILE ILE THR TRP GLY PHE ASP PRO SEQRES 5 A 723 ALA MET ARG PHE LYS ARG PRO ASP GLY PRO ARG ILE GLY SEQRES 6 A 723 GLU LEU LEU GLN THR LYS GLY ARG GLU GLY VAL GLN ALA SEQRES 7 A 723 ARG VAL LEU VAL TRP SER ASN GLN LEU ALA ARG LEU LYS SEQRES 8 A 723 GLU ASN THR ILE PRO GLY ALA GLY VAL GLY GLY SER GLY SEQRES 9 A 723 GLY THR TRP ALA GLY SER GLY VAL ALA SER GLY SER ALA SEQRES 10 A 723 VAL ASP ASN GLU VAL LEU ARG LEU GLU GLN ARG ARG GLN SEQRES 11 A 723 HIS ASN LEU ASN LEU ILE ALA ARG GLN GLN GLU ALA LEU SEQRES 12 A 723 GLU ARG SER GLU ARG LEU HIS ARG GLU GLY ARG LEU PRO SEQRES 13 A 723 SER PHE ASP PRO ARG GLY ALA ALA HIS ALA ARG ALA ARG SEQRES 14 A 723 ILE ALA GLU LEU GLU ALA GLU ASN ALA GLU ILE GLN ARG SEQRES 15 A 723 THR LEU ASP SER SER GLU ALA GLN GLY TYR GLY GLY LYS SEQRES 16 A 723 ARG GLY SER GLY GLY THR ARG GLN ASP PRO TRP GLY GLN SEQRES 17 A 723 ILE PHE THR ARG ASP TRP PHE LYS ALA VAL ARG GLY GLY SEQRES 18 A 723 GLY LEU GLN ASN VAL GLU PHE ARG THR ARG ASP PHE GLU SEQRES 19 A 723 GLN THR ALA ARG PRO VAL MET ASN GLY GLU GLN VAL ARG SEQRES 20 A 723 LEU VAL ASN GLY ARG LEU GLN SER LEU ILE HIS LEU LEU SEQRES 21 A 723 ARG ALA ASP GLY ASN ASP ASP LEU GLY ILE GLY GLN LEU SEQRES 22 A 723 LEU VAL LEU THR GLN PHE ALA SER HIS HIS GLN LYS MET SEQRES 23 A 723 VAL LEU VAL ASP TYR GLY SER PRO GLN ALA ILE GLY PHE SEQRES 24 A 723 VAL MET GLY HIS ASN MET HIS ARG ASN TYR TRP ASP THR SEQRES 25 A 723 SER ALA HIS LEU PHE ASP ASP ARG ALA ALA GLY ARG ASP SEQRES 26 A 723 PRO GLY PHE GLY PRO TRP GLN ASP ILE SER MET GLN VAL SEQRES 27 A 723 GLN GLY PRO VAL LEU ALA ASP LEU SER ARG ASN PHE SER SEQRES 28 A 723 GLU ALA TRP ASP LEU GLU THR PRO TRP TYR LYS ARG TRP SEQRES 29 A 723 PHE SER THR PRO SER LEU THR ALA GLU ARG ASP ALA LEU SEQRES 30 A 723 PRO LEU PRO LYS ILE ALA THR PRO ALA SER ASN SER VAL SEQRES 31 A 723 ALA GLN ILE CYS ARG THR GLN PRO GLN ASP ASP GLU ARG SEQRES 32 A 723 SER ILE LEU GLU HIS TYR LEU LYS ALA LEU GLY ASN ALA SEQRES 33 A 723 THR ASP TYR VAL TYR MET GLU ASN GLN TYR PHE ARG TYR SEQRES 34 A 723 ALA GLY PHE ALA GLU ARG LEU ARG LYS THR ALA GLN VAL SEQRES 35 A 723 ARG LYS ALA ARG GLY VAL PRO GLY ASP LEU TYR LEU PHE SEQRES 36 A 723 VAL VAL THR ASN THR PRO ASP SER SER ASP ALA SER LYS SEQRES 37 A 723 THR THR TYR ASP MET MET LYS GLY LEU GLY GLN GLU GLN SEQRES 38 A 723 LEU MET PRO GLN VAL GLN ARG ASP LEU ALA HIS ASP LEU SEQRES 39 A 723 ARG GLU LYS ARG GLU GLN LEU LYS GLN VAL ARG GLU ASN SEQRES 40 A 723 LEU HIS PRO ASP PRO TYR VAL ARG ARG GLY GLN GLU ASN SEQRES 41 A 723 ASN ILE GLU ARG LEU GLU ARG LYS ILE GLU ALA LEU GLU SEQRES 42 A 723 GLU LYS GLY VAL THR PRO GLU VAL GLU GLN ARG LEU GLY SEQRES 43 A 723 ASP LEU GLY ALA GLN GLU ILE PRO GLY LEU ALA LYS ASN SEQRES 44 A 723 THR GLY GLU ASP ASP LYS PRO TYR GLN LEU ALA GLU ALA SEQRES 45 A 723 PRO GLY LEU LYS VAL VAL VAL ALA THR LEU ALA THR SER SEQRES 46 A 723 ASP PRO ALA PRO GLY SER PRO PRO PRO ALA ARG LEU SER SEQRES 47 A 723 ALA GLU ALA GLU ALA ALA LEU GLY ALA PRO PRO LEU LYS SEQRES 48 A 723 ALA ARG TYR LYS HIS ILE TYR VAL HIS SER LYS LEU LEU SEQRES 49 A 723 LEU VAL ASP ASP LEU TYR THR LEU LEU SER SER ALA ASN SEQRES 50 A 723 ILE ASN VAL ARG SER MET HIS GLY ASP SER GLU LEU GLY SEQRES 51 A 723 ILE ALA GLN PRO ASN PRO ASP LEU ALA ARG ALA MET ARG SEQRES 52 A 723 GLU GLU LEU TRP GLY ALA HIS VAL GLY ARG LEU ALA GLU SEQRES 53 A 723 THR THR GLU LYS ASN PHE GLU LEU TRP ASN GLN LYS MET SEQRES 54 A 723 ASP ASP ASN TRP LYS ALA GLN VAL ALA ASP GLU PRO PHE SEQRES 55 A 723 THR SER HIS LEU LEU ARG PHE TRP ASP VAL THR THR PRO SEQRES 56 A 723 TYR SER GLN ASN LEU THR VAL ASP SEQRES 1 B 272 ALA GLU LEU ARG PRO PHE ILE CYS VAL ASN GLU LYS ASP SEQRES 2 B 272 HIS LEU PRO SER LEU ASP PRO GLN ALA ASP ALA TRP TYR SEQRES 3 B 272 ARG GLU ALA VAL ALA LEU ALA LYS PRO ASP THR LEU ARG SEQRES 4 B 272 PRO TRP ASP ARG ILE VAL ASP LEU TYR SER LYS ALA VAL SEQRES 5 B 272 GLU ARG GLY HIS TRP LYS ALA MET HIS ASN LEU ALA SER SEQRES 6 B 272 LEU TYR ARG THR GLY TRP PRO GLY GLY VAL GLU LYS ASP SEQRES 7 B 272 THR GLN LYS ALA LEU ASP LEU TYR GLN LYS MET ILE ASP SEQRES 8 B 272 LEU LYS VAL PRO GLN GLY PHE TYR ASP MET ALA ALA MET SEQRES 9 B 272 ILE GLY ASN ARG ALA GLY VAL LYS ASN PRO ALA THR ASP SEQRES 10 B 272 GLY LEU THR PHE LEU ASP LYS ALA ALA SER LEU GLY ASN SEQRES 11 B 272 PRO PRO ALA LEU THR GLU LEU GLY ARG LEU TYR ILE TYR SEQRES 12 B 272 VAL ALA GLY GLN ASP GLU LEU GLY LEU LYS TYR THR ASN SEQRES 13 B 272 CYS ALA ALA GLY GLN GLY TYR ALA PRO ALA ASN TYR GLU SEQRES 14 B 272 LEU ALA MET TYR TYR ARG LEU VAL ALA HIS ASN TYR PRO SEQRES 15 B 272 LYS ALA ALA GLY TYR TYR LEU LEU ALA ALA SER GLN GLY SEQRES 16 B 272 ASN ASP ASP ALA ALA PHE PHE MET SER GLY VAL PHE ASP SEQRES 17 B 272 LYS THR SER PRO ASP VAL ASP ARG MET TRP TYR ALA PRO SEQRES 18 B 272 ASP GLU LYS LEU HIS LYS LEU TYR ASP GLY ILE TYR ASP SEQRES 19 B 272 GLN LEU ALA ALA ASP PRO ASP LEU ARG PHE PRO ASN LEU SEQRES 20 B 272 ILE LYS ASP HIS PRO LEU PRO PRO HIS PRO THR GLN GLY SEQRES 21 B 272 TYR ASP ALA ASP ARG PRO ASP TRP LYS PRO GLY GLN HELIX 1 AA1 ASN A 46 ALA A 60 1 15 HELIX 2 AA2 ARG A 85 GLU A 96 1 12 HELIX 3 AA3 HIS A 328 TRP A 332 5 5 HELIX 4 AA4 VAL A 364 GLU A 379 1 16 HELIX 5 AA5 PRO A 381 TRP A 386 1 6 HELIX 6 AA6 SER A 391 ASP A 397 1 7 HELIX 7 AA7 ALA A 408 VAL A 412 5 5 HELIX 8 AA8 SER A 426 ASN A 437 1 12 HELIX 9 AA9 ALA A 452 ARG A 468 1 17 HELIX 10 AB1 SER A 485 GLY A 498 1 14 HELIX 11 AB2 GLN A 507 ASN A 529 1 23 HELIX 12 AB3 ASP A 533 GLU A 556 1 24 HELIX 13 AB4 PRO A 561 GLY A 568 1 8 HELIX 14 AB5 GLY A 577 THR A 582 1 6 HELIX 15 AB6 SER A 620 GLY A 628 1 9 HELIX 16 AB7 ASN A 661 GLY A 667 1 7 HELIX 17 AB8 ASN A 677 GLY A 694 1 18 HELIX 18 AB9 THR A 699 ALA A 720 1 22 HELIX 19 AC1 ASN B 10 HIS B 14 5 5 HELIX 20 AC2 ASP B 19 LYS B 34 1 16 HELIX 21 AC3 PRO B 40 GLU B 53 1 14 HELIX 22 AC4 HIS B 56 GLY B 70 1 15 HELIX 23 AC5 ASP B 78 LYS B 93 1 16 HELIX 24 AC6 VAL B 94 ASN B 107 1 14 HELIX 25 AC7 ASN B 113 LEU B 128 1 16 HELIX 26 AC8 ASN B 130 VAL B 144 1 15 HELIX 27 AC9 GLN B 147 GLN B 161 1 15 HELIX 28 AD1 TYR B 163 VAL B 177 1 15 HELIX 29 AD2 ASN B 180 GLN B 194 1 15 HELIX 30 AD3 ASN B 196 PHE B 207 1 12 HELIX 31 AD4 ASP B 222 ASP B 239 1 18 HELIX 32 AD5 ASN B 246 HIS B 251 1 6 SHEET 1 AA1 7 HIS A 40 ILE A 45 0 SHEET 2 AA1 7 ILE A 356 GLN A 361 -1 O SER A 357 N LEU A 44 SHEET 3 AA1 7 ILE A 319 MET A 323 -1 N GLY A 320 O VAL A 360 SHEET 4 AA1 7 MET A 308 VAL A 311 -1 N VAL A 311 O ILE A 319 SHEET 5 AA1 7 SER A 64 THR A 69 -1 N ILE A 68 O MET A 308 SHEET 6 AA1 7 GLN A 99 TRP A 105 1 O GLN A 99 N ILE A 65 SHEET 7 AA1 7 VAL A 248 ARG A 253 1 O ARG A 251 N VAL A 104 SHEET 1 AA2 2 TRP A 353 GLN A 354 0 SHEET 2 AA2 2 TYR A 640 VAL A 641 1 O TYR A 640 N GLN A 354 SHEET 1 AA3 9 GLU A 424 ARG A 425 0 SHEET 2 AA3 9 GLN A 414 GLN A 419 -1 N GLN A 419 O GLU A 424 SHEET 3 AA3 9 GLU A 670 PRO A 676 -1 O GLY A 672 N CYS A 416 SHEET 4 AA3 9 TYR A 652 SER A 656 -1 N THR A 653 O GLN A 675 SHEET 5 AA3 9 LYS A 644 VAL A 648 -1 N LEU A 646 O LEU A 654 SHEET 6 AA3 9 TYR A 441 ASN A 446 -1 N TYR A 443 O LEU A 647 SHEET 7 AA3 9 LEU A 474 VAL A 479 1 O TYR A 475 N VAL A 442 SHEET 8 AA3 9 LEU A 597 SER A 607 1 O LYS A 598 N LEU A 476 SHEET 9 AA3 9 TYR A 636 HIS A 638 -1 O LYS A 637 N THR A 606 SHEET 1 AA4 9 GLU A 424 ARG A 425 0 SHEET 2 AA4 9 GLN A 414 GLN A 419 -1 N GLN A 419 O GLU A 424 SHEET 3 AA4 9 GLU A 670 PRO A 676 -1 O GLY A 672 N CYS A 416 SHEET 4 AA4 9 TYR A 652 SER A 656 -1 N THR A 653 O GLN A 675 SHEET 5 AA4 9 LYS A 644 VAL A 648 -1 N LEU A 646 O LEU A 654 SHEET 6 AA4 9 TYR A 441 ASN A 446 -1 N TYR A 443 O LEU A 647 SHEET 7 AA4 9 LEU A 474 VAL A 479 1 O TYR A 475 N VAL A 442 SHEET 8 AA4 9 LEU A 597 SER A 607 1 O LYS A 598 N LEU A 476 SHEET 9 AA4 9 LEU A 728 ARG A 730 -1 O LEU A 729 N THR A 603 CISPEP 1 ARG A 80 PRO A 81 0 -3.37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 509 0 0 32 27 0 0 6 5758 2 0 77 END