HEADER HYDROLASE 24-NOV-25 9XUI TITLE CRYSTAL STRUCTURE OF THE DEEP-SEA HALOPHILIC PET HYDROLASE DSPETASE06 TITLE 2 C23A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PET HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONADOTA BACTERIUM; SOURCE 3 ORGANISM_TAXID: 1977087; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYDROLASE, PET HYDROLASE, PET DEGRADATION ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,M.Z.ZHANG,S.Q.HUANG,C.ZENG,J.-W.HUANG,C.-C.CHEN,R.-T.GUO REVDAT 1 23-SEP-26 9XUI 0 JRNL AUTH X.LI,M.Z.ZHANG,S.Q.HUANG,C.ZENG,J.-W.HUANG,C.-C.CHEN, JRNL AUTH 2 R.-T.GUO JRNL TITL CRYSTAL STRUCTURE OF THE DEEP-SEA HALOPHILIC PET HYDROLASE JRNL TITL 2 DSPETASE06 C23A MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 75309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2083 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1779 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2842 ; 2.080 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4156 ; 1.657 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 6.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;34.576 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;10.498 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 263 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2409 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 433 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1041 ; 1.422 ; 1.751 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1040 ; 1.396 ; 1.749 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1302 ; 2.206 ; 2.625 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1303 ; 2.214 ; 2.627 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1042 ; 2.935 ; 2.011 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1043 ; 2.936 ; 2.016 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1536 ; 4.335 ; 2.921 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2560 ; 5.527 ;23.474 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2436 ; 5.178 ;22.071 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9XUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 28-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300066364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79329 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE HEXAHYDRATE; REMARK 280 0.1M SODIUM HEPES PH 7.5; 30% PEG 400, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.76667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.53333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.15000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.91667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.38333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 PHE A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 ASP A 28 REMARK 465 PRO A 29 REMARK 465 GLU A 30 REMARK 465 PRO A 31 REMARK 465 GLY A 32 REMARK 465 PRO A 33 REMARK 465 ASP A 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 605 O HOH A 611 1.51 REMARK 500 O HOH A 485 O HOH A 730 1.84 REMARK 500 O HOH A 403 O HOH A 630 1.95 REMARK 500 ND2 ASN A 241 O HOH A 401 1.99 REMARK 500 O HOH A 470 O HOH A 741 2.03 REMARK 500 NE2 GLN A 291 O HOH A 402 2.03 REMARK 500 O HOH A 455 O HOH A 741 2.04 REMARK 500 OE1 GLU A 91 O HOH A 403 2.05 REMARK 500 O HOH A 484 O HOH A 730 2.06 REMARK 500 O HOH A 428 O HOH A 735 2.06 REMARK 500 O HOH A 403 O HOH A 433 2.09 REMARK 500 O HOH A 598 O HOH A 753 2.10 REMARK 500 O HOH A 424 O HOH A 741 2.10 REMARK 500 O HOH A 403 O HOH A 745 2.10 REMARK 500 O HOH A 403 O HOH A 510 2.11 REMARK 500 O HOH A 402 O HOH A 535 2.12 REMARK 500 O HOH A 457 O HOH A 747 2.14 REMARK 500 O HOH A 402 O HOH A 660 2.14 REMARK 500 N GLY A 35 O HOH A 404 2.15 REMARK 500 O HOH A 403 O HOH A 519 2.17 REMARK 500 O HOH A 402 O HOH A 644 2.17 REMARK 500 ND2 ASN A 187 O HOH A 405 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 741 O HOH A 787 3544 1.97 REMARK 500 O HOH A 402 O HOH A 486 2445 1.99 REMARK 500 O HOH A 426 O HOH A 741 2445 2.07 REMARK 500 O HOH A 402 O HOH A 586 2445 2.11 REMARK 500 O HOH A 543 O HOH A 741 2445 2.12 REMARK 500 O HOH A 422 O HOH A 735 5554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 194 CD GLU A 194 OE2 -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 -8.58 77.31 REMARK 500 SER A 156 -120.89 70.56 REMARK 500 ASP A 272 18.78 -146.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 793 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 O REMARK 620 2 GLU A 129 OE2 95.2 REMARK 620 3 ASP A 132 OD2 171.3 93.2 REMARK 620 4 GLU A 133 OE2 83.9 96.5 92.9 REMARK 620 5 HOH A 585 O 84.0 86.7 98.7 167.8 REMARK 620 6 HOH A 670 O 85.0 168.3 87.2 95.1 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 413 O REMARK 620 2 HOH A 421 O 168.8 REMARK 620 3 HOH A 422 O 78.1 96.6 REMARK 620 4 HOH A 462 O 87.3 97.8 165.4 REMARK 620 5 HOH A 733 O 92.4 98.1 95.8 84.2 REMARK 620 6 HOH A 735 O 78.3 90.5 68.5 109.3 163.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 444 O REMARK 620 2 HOH A 477 O 84.6 REMARK 620 3 HOH A 616 O 172.0 87.9 REMARK 620 4 HOH A 676 O 96.7 101.5 87.6 REMARK 620 5 HOH A 699 O 89.9 170.7 97.1 86.6 REMARK 620 6 HOH A 759 O 91.3 89.7 85.7 166.8 82.9 REMARK 620 N 1 2 3 4 5 DBREF 9XUI A 22 292 PDB 9XUI 9XUI 22 292 SEQRES 1 A 271 MET ALA PHE GLY GLY GLY ASP PRO GLU PRO GLY PRO ASP SEQRES 2 A 271 GLY GLN ALA LEU THR ASN PRO GLY GLU TYR GLU ILE CYS SEQRES 3 A 271 SER TYR GLU THR ASP LEU GLU ASN SER GLY TYR ALA SER SEQRES 4 A 271 ALA ARG MET THR TYR PRO CYS ASP LEU SER ASP GLY PRO SEQRES 5 A 271 TYR PRO ALA THR THR LEU THR GLY GLY PHE THR ASN THR SEQRES 6 A 271 LYS GLU GLN MET GLU TRP LEU ALA GLU HIS LEU THR THR SEQRES 7 A 271 HIS GLY TYR VAL VAL LEU THR MET THR PRO ASN ASN THR SEQRES 8 A 271 LEU GLY VAL PRO PRO GLY TRP ARG ASP ALA GLN LEU GLY SEQRES 9 A 271 GLY PHE ALA GLU LEU ALA ASP GLU ASN ALA ARG SER ASN SEQRES 10 A 271 SER PRO LEU LYS GLY LYS ILE ASP LEU SER LYS ARG ASN SEQRES 11 A 271 ILE MET GLY PHE SER MET GLY GLY GLY GLY VAL ILE LEU SEQRES 12 A 271 ALA ALA GLU GLU MET GLY ASP ALA PRO THR SER ALA ILE SEQRES 13 A 271 ALA LEU ALA PRO TRP LEU GLY ALA TYR ASN VAL ASP TYR SEQRES 14 A 271 SER GLN ILE GLU THR PRO MET LEU MET LEU GLY SER GLU SEQRES 15 A 271 ASN ASP GLU LEU ALA TYR TYR THR GLU ASP TYR TYR ALA SEQRES 16 A 271 GLN LEU PRO ALA ASP LEU GLU ARG GLY VAL ALA ILE TYR SEQRES 17 A 271 ALA GLY ALA SER HIS PHE ASP TRP TYR GLY VAL ASN ASN SEQRES 18 A 271 GLN ASP GLN LYS ALA GLN PHE ARG THR LEU VAL THR ALA SEQRES 19 A 271 PHE LEU GLU VAL GLN LEU LYS GLY ASP THR SER ALA TYR SEQRES 20 A 271 SER TYR PHE ASP GLY ALA GLU HIS ASP GLU HIS VAL GLN SEQRES 21 A 271 GLU GLY TRP PHE SER ALA PHE ASP TYR GLN LYS HET PEG A 301 7 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION FORMUL 2 PEG C4 H10 O3 FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *393(H2 O) HELIX 1 AA1 THR A 86 GLN A 89 5 4 HELIX 2 AA2 MET A 90 HIS A 100 1 11 HELIX 3 AA3 VAL A 115 ARG A 136 1 22 HELIX 4 AA4 SER A 156 GLY A 170 1 15 HELIX 5 AA5 ASP A 189 ILE A 193 5 5 HELIX 6 AA6 LEU A 207 GLN A 217 1 11 HELIX 7 AA7 HIS A 234 TYR A 238 5 5 HELIX 8 AA8 ASN A 242 GLY A 263 1 22 HELIX 9 AA9 ASP A 264 ALA A 267 5 4 HELIX 10 AB1 TYR A 268 GLY A 273 1 6 HELIX 11 AB2 GLY A 273 GLU A 282 1 10 SHEET 1 AA1 9 ILE A 46 TYR A 49 0 SHEET 2 AA1 9 SER A 60 PRO A 66 -1 O MET A 63 N TYR A 49 SHEET 3 AA1 9 VAL A 103 THR A 108 -1 O VAL A 104 N THR A 64 SHEET 4 AA1 9 TYR A 74 THR A 80 1 N PRO A 75 O VAL A 103 SHEET 5 AA1 9 ILE A 145 PHE A 155 1 O ASP A 146 N TYR A 74 SHEET 6 AA1 9 SER A 175 LEU A 179 1 O LEU A 179 N GLY A 154 SHEET 7 AA1 9 MET A 197 SER A 202 1 O LEU A 198 N ALA A 178 SHEET 8 AA1 9 ARG A 224 TYR A 229 1 O TYR A 229 N GLY A 201 SHEET 9 AA1 9 PHE A 285 GLN A 291 -1 O GLN A 291 N ARG A 224 SSBOND 1 CYS A 47 CYS A 67 1555 1555 2.20 LINK O ASP A 52 MG MG A 304 1555 1555 2.32 LINK OE2 GLU A 129 MG MG A 304 1555 1555 2.21 LINK OD2 ASP A 132 MG MG A 304 1555 1555 2.27 LINK OE2 GLU A 133 MG MG A 304 1555 1555 2.35 LINK MG MG A 302 O HOH A 413 1555 1555 2.21 LINK MG MG A 302 O HOH A 421 1555 5554 1.89 LINK MG MG A 302 O HOH A 422 1555 1555 1.92 LINK MG MG A 302 O HOH A 462 1555 5554 2.16 LINK MG MG A 302 O HOH A 733 1555 1555 2.00 LINK MG MG A 302 O HOH A 735 1555 5554 1.95 LINK MG MG A 303 O HOH A 444 1555 1555 2.21 LINK MG MG A 303 O HOH A 477 1555 1555 2.07 LINK MG MG A 303 O HOH A 616 1555 1555 2.10 LINK MG MG A 303 O HOH A 676 1555 5554 2.26 LINK MG MG A 303 O HOH A 699 1555 5554 2.05 LINK MG MG A 303 O HOH A 759 1555 1555 1.83 LINK MG MG A 304 O HOH A 585 1555 1555 2.37 LINK MG MG A 304 O HOH A 670 1555 1555 2.32 CISPEP 1 GLY A 72 PRO A 73 0 0.56 CRYST1 77.315 77.315 116.300 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012934 0.007468 0.000000 0.00000 SCALE2 0.000000 0.014935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008598 0.00000 CONECT 102 261 CONECT 140 2030 CONECT 261 102 CONECT 733 2030 CONECT 754 2030 CONECT 763 2030 CONECT 2021 2022 2023 CONECT 2022 2021 CONECT 2023 2021 2024 CONECT 2024 2023 2025 CONECT 2025 2024 2026 CONECT 2026 2025 2027 CONECT 2027 2026 CONECT 2028 2043 2052 2363 CONECT 2029 2074 2107 2246 2389 CONECT 2030 140 733 754 763 CONECT 2030 2215 2300 CONECT 2043 2028 CONECT 2052 2028 CONECT 2074 2029 CONECT 2107 2029 CONECT 2215 2030 CONECT 2246 2029 CONECT 2300 2030 CONECT 2363 2028 CONECT 2389 2029 MASTER 431 0 4 11 9 0 0 6 2398 1 26 21 END