HEADER SIGNALING PROTEIN 27-NOV-25 9XW0 TITLE CRYSTAL STRUCTURE OF THE TNIK-TK7 PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAF2 AND NCK-INTERACTING PROTEIN KINASE; COMPND 3 CHAIN: A, C; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE TK7; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNIK, KIAA0551; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS RIPP, THIOPEPTIDE, KINASE INHIBITION, COMPLEX, SIGNALING PROTEIN- KEYWDS 2 INHIBITOR COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.HAMADA,Y.ZHANG,A.A.VINOGRADOV,Y.SUN,H.SUGA,T.SENGOKU REVDAT 1 26-AUG-26 9XW0 0 JRNL AUTH Y.ZHANG,A.A.VINOGRADOV,K.HAMADA,Y.SUN,T.SENGOKU,H.SUGA JRNL TITL DE NOVO DISCOVERY OF NONSTANDARD THIOISOINDOLE-BRIDGED JRNL TITL 2 BICYCLIC PEPTIDES TARGETING TRAF2- AND NCK-INTERACTING JRNL TITL 3 KINASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. 17165 2026 JRNL REFN ESSN 1521-3773 JRNL PMID 42593841 JRNL DOI 10.1002/ANIE.2417165 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9800 - 5.3400 1.00 2660 145 0.1738 0.1812 REMARK 3 2 5.3300 - 4.2400 1.00 2680 144 0.1597 0.1961 REMARK 3 3 4.2400 - 3.7000 1.00 2651 134 0.1743 0.2178 REMARK 3 4 3.7000 - 3.3600 1.00 2633 139 0.2038 0.2311 REMARK 3 5 3.3600 - 3.1200 1.00 2616 142 0.2215 0.3056 REMARK 3 6 3.1200 - 2.9400 1.00 2635 138 0.2313 0.2829 REMARK 3 7 2.9400 - 2.7900 1.00 2644 145 0.2351 0.3016 REMARK 3 8 2.7900 - 2.6700 1.00 2634 156 0.2479 0.2906 REMARK 3 9 2.6700 - 2.5700 1.00 2630 146 0.2530 0.3159 REMARK 3 10 2.5700 - 2.4800 1.00 2628 138 0.2631 0.2786 REMARK 3 11 2.4800 - 2.4000 1.00 2634 135 0.3131 0.3813 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.295 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.032 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4909 REMARK 3 ANGLE : 0.465 6662 REMARK 3 CHIRALITY : 0.041 740 REMARK 3 PLANARITY : 0.004 857 REMARK 3 DIHEDRAL : 14.392 1803 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8598 28.8632 12.7549 REMARK 3 T TENSOR REMARK 3 T11: 0.6750 T22: 0.2888 REMARK 3 T33: 0.4543 T12: -0.0026 REMARK 3 T13: 0.1135 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 6.6497 L22: 5.0578 REMARK 3 L33: 3.9688 L12: 0.9097 REMARK 3 L13: -1.3103 L23: -0.7759 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0213 S13: 0.6447 REMARK 3 S21: 0.3151 S22: 0.2501 S23: 0.7426 REMARK 3 S31: -0.0465 S32: -0.1214 S33: -0.1452 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3624 16.8268 5.1197 REMARK 3 T TENSOR REMARK 3 T11: 0.5729 T22: 0.2645 REMARK 3 T33: 0.2859 T12: -0.0430 REMARK 3 T13: 0.0484 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.9443 L22: 2.5000 REMARK 3 L33: 2.9342 L12: 0.0435 REMARK 3 L13: -0.5561 L23: 0.2780 REMARK 3 S TENSOR REMARK 3 S11: -0.0545 S12: 0.0167 S13: -0.0265 REMARK 3 S21: 0.1248 S22: 0.1077 S23: -0.0847 REMARK 3 S31: 0.0925 S32: 0.2516 S33: -0.0653 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9816 19.9642 -6.5360 REMARK 3 T TENSOR REMARK 3 T11: 0.5284 T22: 0.3734 REMARK 3 T33: 0.3571 T12: -0.1052 REMARK 3 T13: 0.1396 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 4.6966 L22: 4.4918 REMARK 3 L33: 5.2689 L12: -2.4681 REMARK 3 L13: 0.7758 L23: -1.5203 REMARK 3 S TENSOR REMARK 3 S11: 0.1995 S12: 0.2870 S13: 0.4745 REMARK 3 S21: -0.3892 S22: -0.1865 S23: -0.6110 REMARK 3 S31: -0.4742 S32: 0.6666 S33: 0.0305 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 12 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7515 64.7368 -6.1966 REMARK 3 T TENSOR REMARK 3 T11: 1.0806 T22: 0.3035 REMARK 3 T33: 0.3855 T12: -0.0124 REMARK 3 T13: -0.0933 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 8.0530 L22: 3.8807 REMARK 3 L33: 4.2951 L12: 3.2377 REMARK 3 L13: -0.6167 L23: -0.4787 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.5850 S13: -0.0756 REMARK 3 S21: -1.2490 S22: 0.1486 S23: 0.0176 REMARK 3 S31: -0.0540 S32: -0.1488 S33: -0.2553 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 63 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6870 61.8594 10.5947 REMARK 3 T TENSOR REMARK 3 T11: 0.7281 T22: 0.2885 REMARK 3 T33: 0.3648 T12: -0.0325 REMARK 3 T13: -0.0998 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.3616 L22: 1.9648 REMARK 3 L33: 4.9247 L12: -0.2241 REMARK 3 L13: 1.7348 L23: -0.8268 REMARK 3 S TENSOR REMARK 3 S11: -0.1005 S12: -0.1599 S13: 0.1351 REMARK 3 S21: 0.1050 S22: 0.0783 S23: 0.0869 REMARK 3 S31: -0.3832 S32: -0.2871 S33: 0.0250 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 229 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8233 44.5689 23.3352 REMARK 3 T TENSOR REMARK 3 T11: 1.0672 T22: 0.4958 REMARK 3 T33: 0.5649 T12: -0.2278 REMARK 3 T13: -0.1892 T23: 0.1762 REMARK 3 L TENSOR REMARK 3 L11: 3.1012 L22: 3.5663 REMARK 3 L33: 4.9808 L12: 1.4604 REMARK 3 L13: 2.6418 L23: 1.6181 REMARK 3 S TENSOR REMARK 3 S11: 0.6523 S12: -0.7497 S13: -0.7219 REMARK 3 S21: 0.5628 S22: -0.3147 S23: -0.3486 REMARK 3 S31: 1.2418 S32: -1.1115 S33: -0.3252 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 260 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2008 63.1452 26.3007 REMARK 3 T TENSOR REMARK 3 T11: 0.8872 T22: 0.5198 REMARK 3 T33: 0.4038 T12: 0.0122 REMARK 3 T13: -0.2203 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 6.4801 L22: 3.1781 REMARK 3 L33: 8.4472 L12: -0.1910 REMARK 3 L13: -1.2495 L23: -0.3268 REMARK 3 S TENSOR REMARK 3 S11: -0.3270 S12: -0.7780 S13: 0.5094 REMARK 3 S21: 0.8601 S22: 0.1053 S23: -0.2200 REMARK 3 S31: -0.9822 S32: -0.2682 S33: 0.1739 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5953 9.6346 7.9409 REMARK 3 T TENSOR REMARK 3 T11: 0.9209 T22: 0.3518 REMARK 3 T33: 0.5654 T12: 0.0200 REMARK 3 T13: 0.3532 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 5.9672 L22: 9.5452 REMARK 3 L33: 2.2933 L12: 0.9232 REMARK 3 L13: -2.6460 L23: 2.8275 REMARK 3 S TENSOR REMARK 3 S11: -0.5307 S12: -0.1199 S13: -0.4497 REMARK 3 S21: 0.0475 S22: 0.2910 S23: 0.7002 REMARK 3 S31: 0.2381 S32: -0.4904 S33: 0.2530 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9400 5.2012 -0.5969 REMARK 3 T TENSOR REMARK 3 T11: 0.8993 T22: 0.4063 REMARK 3 T33: 0.5975 T12: 0.0837 REMARK 3 T13: -0.1225 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.9343 L22: 4.6744 REMARK 3 L33: 9.1851 L12: 4.2666 REMARK 3 L13: 5.9944 L23: 6.5514 REMARK 3 S TENSOR REMARK 3 S11: -0.2908 S12: 0.7443 S13: -0.0256 REMARK 3 S21: -0.4273 S22: -0.5869 S23: 0.8870 REMARK 3 S31: -0.2359 S32: 0.2794 S33: 0.7458 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5763 48.4560 5.1318 REMARK 3 T TENSOR REMARK 3 T11: 1.1888 T22: 0.3635 REMARK 3 T33: 0.6340 T12: -0.1655 REMARK 3 T13: -0.0720 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.4729 L22: 8.5132 REMARK 3 L33: 4.3317 L12: 2.0026 REMARK 3 L13: 1.4304 L23: 6.0726 REMARK 3 S TENSOR REMARK 3 S11: 0.1722 S12: 0.3128 S13: -0.6365 REMARK 3 S21: -1.3406 S22: 0.2647 S23: -0.3480 REMARK 3 S31: 0.9213 S32: -0.1791 S33: -0.4492 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 12 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0826 42.6752 10.2815 REMARK 3 T TENSOR REMARK 3 T11: 1.0786 T22: 0.5331 REMARK 3 T33: 0.8127 T12: -0.1131 REMARK 3 T13: 0.1130 T23: 0.0997 REMARK 3 L TENSOR REMARK 3 L11: 4.6453 L22: 3.9316 REMARK 3 L33: 4.5845 L12: -0.6139 REMARK 3 L13: 2.2487 L23: 3.3701 REMARK 3 S TENSOR REMARK 3 S11: 0.2478 S12: -0.4391 S13: -1.0563 REMARK 3 S21: -0.7185 S22: 0.6228 S23: 0.0943 REMARK 3 S31: 0.9828 S32: 0.4776 S33: -0.9336 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300066520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-25 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 19, 2025 REMARK 200 DATA SCALING SOFTWARE : XDS JAN 19, 2025 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 45.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 148.4 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME5000, HEPES, TACSIMATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 83.61000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 ASP A 11 REMARK 465 LYS A 311 REMARK 465 LYS A 312 REMARK 465 ARG A 313 REMARK 465 GLY A 314 REMARK 465 GLY C 9 REMARK 465 PRO C 10 REMARK 465 ASP C 11 REMARK 465 ARG C 180 REMARK 465 TPO C 181 REMARK 465 VAL C 182 REMARK 465 GLY C 183 REMARK 465 ARG C 184 REMARK 465 ARG C 185 REMARK 465 CYS C 202 REMARK 465 ASP C 203 REMARK 465 GLU C 204 REMARK 465 ASN C 205 REMARK 465 PRO C 206 REMARK 465 ASP C 207 REMARK 465 ALA C 208 REMARK 465 THR C 209 REMARK 465 LYS C 311 REMARK 465 LYS C 312 REMARK 465 ARG C 313 REMARK 465 GLY C 314 REMARK 465 LEU B 2 REMARK 465 HIS B 3 REMARK 465 LEU D 2 REMARK 465 HIS D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 ARG C 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 LYS C 121 CG CD CE NZ REMARK 470 LYS C 148 CG CD CE NZ REMARK 470 GLU C 163 CG CD OE1 OE2 REMARK 470 TPO C 187 CG2 OG1 P O1P O2P O3P REMARK 470 TYR C 210 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 254 CG CD CE NZ REMARK 470 LYS C 260 CG CD CE NZ REMARK 470 GLU C 267 CG CD OE1 OE2 REMARK 470 LYS C 285 CG CD CE NZ REMARK 470 ARG C 296 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 297 CG CD OE1 NE2 REMARK 470 ARG C 308 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 310 CG CD CE NZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS D 14 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 24 -55.11 -121.92 REMARK 500 ASP A 153 47.66 -153.99 REMARK 500 ASP A 171 73.28 67.50 REMARK 500 ASN A 186 15.29 -143.58 REMARK 500 GLU A 204 -79.64 -83.84 REMARK 500 ASP A 211 -148.26 -135.23 REMARK 500 LEU A 233 18.99 59.56 REMARK 500 LEU A 270 65.08 -102.20 REMARK 500 PRO C 95 20.82 -74.03 REMARK 500 ASP C 153 46.48 -148.16 REMARK 500 ASP C 171 70.54 64.34 REMARK 500 TPO C 187 -52.80 -141.75 REMARK 500 ASP C 211 -150.79 -131.02 REMARK 500 LEU C 270 67.44 -100.07 REMARK 500 TYR B 16 -74.51 -71.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 511 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 77 O REMARK 620 2 HIS A 79 O 83.0 REMARK 620 3 ILE A 82 O 87.3 79.0 REMARK 620 4 THR A 84 OG1 92.3 172.5 106.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 77 O REMARK 620 2 HIS C 79 O 94.4 REMARK 620 3 ILE C 82 O 90.7 85.7 REMARK 620 4 THR C 84 OG1 91.0 170.0 102.7 REMARK 620 5 HOH C 504 O 163.4 99.1 80.9 77.1 REMARK 620 N 1 2 3 4 DBREF 9XW0 A 11 314 UNP Q9UKE5 TNIK_HUMAN 11 314 DBREF 9XW0 C 11 314 UNP Q9UKE5 TNIK_HUMAN 11 314 DBREF 9XW0 B 2 17 PDB 9XW0 9XW0 2 17 DBREF 9XW0 D 2 17 PDB 9XW0 9XW0 2 17 SEQADV 9XW0 GLY A 9 UNP Q9UKE5 EXPRESSION TAG SEQADV 9XW0 PRO A 10 UNP Q9UKE5 EXPRESSION TAG SEQADV 9XW0 GLY C 9 UNP Q9UKE5 EXPRESSION TAG SEQADV 9XW0 PRO C 10 UNP Q9UKE5 EXPRESSION TAG SEQRES 1 A 306 GLY PRO ASP GLU ILE ASP LEU SER ALA LEU ARG ASP PRO SEQRES 2 A 306 ALA GLY ILE PHE GLU LEU VAL GLU LEU VAL GLY ASN GLY SEQRES 3 A 306 THR TYR GLY GLN VAL TYR LYS GLY ARG HIS VAL LYS THR SEQRES 4 A 306 GLY GLN LEU ALA ALA ILE LYS VAL MET ASP VAL THR GLY SEQRES 5 A 306 ASP GLU GLU GLU GLU ILE LYS GLN GLU ILE ASN MET LEU SEQRES 6 A 306 LYS LYS TYR SER HIS HIS ARG ASN ILE ALA THR TYR TYR SEQRES 7 A 306 GLY ALA PHE ILE LYS LYS ASN PRO PRO GLY MET ASP ASP SEQRES 8 A 306 GLN LEU TRP LEU VAL MET GLU PHE CYS GLY ALA GLY SER SEQRES 9 A 306 VAL THR ASP LEU ILE LYS ASN THR LYS GLY ASN THR LEU SEQRES 10 A 306 LYS GLU GLU TRP ILE ALA TYR ILE CYS ARG GLU ILE LEU SEQRES 11 A 306 ARG GLY LEU SER HIS LEU HIS GLN HIS LYS VAL ILE HIS SEQRES 12 A 306 ARG ASP ILE LYS GLY GLN ASN VAL LEU LEU THR GLU ASN SEQRES 13 A 306 ALA GLU VAL LYS LEU VAL ASP PHE GLY VAL SER ALA GLN SEQRES 14 A 306 LEU ASP ARG TPO VAL GLY ARG ARG ASN TPO PHE ILE GLY SEQRES 15 A 306 THR PRO TYR TRP MET ALA PRO GLU VAL ILE ALA CYS ASP SEQRES 16 A 306 GLU ASN PRO ASP ALA THR TYR ASP PHE LYS SER ASP LEU SEQRES 17 A 306 TRP SER LEU GLY ILE THR ALA ILE GLU MET ALA GLU GLY SEQRES 18 A 306 ALA PRO PRO LEU CYS ASP MET HIS PRO MET ARG ALA LEU SEQRES 19 A 306 PHE LEU ILE PRO ARG ASN PRO ALA PRO ARG LEU LYS SER SEQRES 20 A 306 LYS LYS TRP SER LYS LYS PHE GLN SER PHE ILE GLU SER SEQRES 21 A 306 CYS LEU VAL LYS ASN HIS SER GLN ARG PRO ALA THR GLU SEQRES 22 A 306 GLN LEU MET LYS HIS PRO PHE ILE ARG ASP GLN PRO ASN SEQRES 23 A 306 GLU ARG GLN VAL ARG ILE GLN LEU LYS ASP HIS ILE ASP SEQRES 24 A 306 ARG THR LYS LYS LYS ARG GLY SEQRES 1 C 306 GLY PRO ASP GLU ILE ASP LEU SER ALA LEU ARG ASP PRO SEQRES 2 C 306 ALA GLY ILE PHE GLU LEU VAL GLU LEU VAL GLY ASN GLY SEQRES 3 C 306 THR TYR GLY GLN VAL TYR LYS GLY ARG HIS VAL LYS THR SEQRES 4 C 306 GLY GLN LEU ALA ALA ILE LYS VAL MET ASP VAL THR GLY SEQRES 5 C 306 ASP GLU GLU GLU GLU ILE LYS GLN GLU ILE ASN MET LEU SEQRES 6 C 306 LYS LYS TYR SER HIS HIS ARG ASN ILE ALA THR TYR TYR SEQRES 7 C 306 GLY ALA PHE ILE LYS LYS ASN PRO PRO GLY MET ASP ASP SEQRES 8 C 306 GLN LEU TRP LEU VAL MET GLU PHE CYS GLY ALA GLY SER SEQRES 9 C 306 VAL THR ASP LEU ILE LYS ASN THR LYS GLY ASN THR LEU SEQRES 10 C 306 LYS GLU GLU TRP ILE ALA TYR ILE CYS ARG GLU ILE LEU SEQRES 11 C 306 ARG GLY LEU SER HIS LEU HIS GLN HIS LYS VAL ILE HIS SEQRES 12 C 306 ARG ASP ILE LYS GLY GLN ASN VAL LEU LEU THR GLU ASN SEQRES 13 C 306 ALA GLU VAL LYS LEU VAL ASP PHE GLY VAL SER ALA GLN SEQRES 14 C 306 LEU ASP ARG TPO VAL GLY ARG ARG ASN TPO PHE ILE GLY SEQRES 15 C 306 THR PRO TYR TRP MET ALA PRO GLU VAL ILE ALA CYS ASP SEQRES 16 C 306 GLU ASN PRO ASP ALA THR TYR ASP PHE LYS SER ASP LEU SEQRES 17 C 306 TRP SER LEU GLY ILE THR ALA ILE GLU MET ALA GLU GLY SEQRES 18 C 306 ALA PRO PRO LEU CYS ASP MET HIS PRO MET ARG ALA LEU SEQRES 19 C 306 PHE LEU ILE PRO ARG ASN PRO ALA PRO ARG LEU LYS SER SEQRES 20 C 306 LYS LYS TRP SER LYS LYS PHE GLN SER PHE ILE GLU SER SEQRES 21 C 306 CYS LEU VAL LYS ASN HIS SER GLN ARG PRO ALA THR GLU SEQRES 22 C 306 GLN LEU MET LYS HIS PRO PHE ILE ARG ASP GLN PRO ASN SEQRES 23 C 306 GLU ARG GLN VAL ARG ILE GLN LEU LYS ASP HIS ILE ASP SEQRES 24 C 306 ARG THR LYS LYS LYS ARG GLY SEQRES 1 B 16 LEU HIS SER LEU THR ARG ARG PRO SER THR TRP THR LYS SEQRES 2 B 16 SER TYR CYS SEQRES 1 D 16 LEU HIS SER LEU THR ARG ARG PRO SER THR TRP THR LYS SEQRES 2 D 16 SER TYR CYS MODRES 9XW0 TPO A 181 THR MODIFIED RESIDUE MODRES 9XW0 TPO A 187 THR MODIFIED RESIDUE MODRES 9XW0 TPO C 187 THR MODIFIED RESIDUE HET TPO A 181 11 HET TPO A 187 11 HET TPO C 187 5 HET NA A 401 1 HET NA C 401 1 HETNAM TPO PHOSPHOTHREONINE HETNAM NA SODIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 3(C4 H10 N O6 P) FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *58(H2 O) HELIX 1 AA1 ASP A 14 LEU A 18 5 5 HELIX 2 AA2 GLU A 62 SER A 77 1 16 HELIX 3 AA3 SER A 112 ASN A 119 1 8 HELIX 4 AA4 THR A 120 THR A 124 5 5 HELIX 5 AA5 LYS A 126 HIS A 147 1 22 HELIX 6 AA6 THR A 191 MET A 195 5 5 HELIX 7 AA7 ALA A 196 ASN A 205 1 10 HELIX 8 AA8 PHE A 212 GLY A 229 1 18 HELIX 9 AA9 HIS A 237 ILE A 245 1 9 HELIX 10 AB1 SER A 259 LEU A 270 1 12 HELIX 11 AB2 ASN A 273 ARG A 277 5 5 HELIX 12 AB3 ALA A 279 LYS A 285 1 7 HELIX 13 AB4 HIS A 286 ASP A 291 1 6 HELIX 14 AB5 ASN A 294 THR A 309 1 16 HELIX 15 AB6 ASP C 14 LEU C 18 5 5 HELIX 16 AB7 GLU C 62 SER C 77 1 16 HELIX 17 AB8 VAL C 113 ASN C 119 1 7 HELIX 18 AB9 LYS C 126 HIS C 147 1 22 HELIX 19 AC1 LYS C 155 GLN C 157 5 3 HELIX 20 AC2 THR C 191 MET C 195 5 5 HELIX 21 AC3 ALA C 196 ALA C 201 1 6 HELIX 22 AC4 PHE C 212 GLY C 229 1 18 HELIX 23 AC5 HIS C 237 PHE C 243 1 7 HELIX 24 AC6 SER C 259 LEU C 270 1 12 HELIX 25 AC7 ASN C 273 ARG C 277 5 5 HELIX 26 AC8 ALA C 279 LYS C 285 1 7 HELIX 27 AC9 HIS C 286 ASP C 291 1 6 HELIX 28 AD1 ASN C 294 THR C 309 1 16 HELIX 29 AD2 ARG B 8 TRP B 12 5 5 HELIX 30 AD3 ARG D 8 TRP D 12 5 5 SHEET 1 AA1 5 PHE A 25 ASN A 33 0 SHEET 2 AA1 5 GLN A 38 HIS A 44 -1 O LYS A 41 N GLU A 29 SHEET 3 AA1 5 LEU A 50 ASP A 57 -1 O ALA A 51 N GLY A 42 SHEET 4 AA1 5 GLN A 100 GLU A 106 -1 O MET A 105 N ALA A 52 SHEET 5 AA1 5 TYR A 85 LYS A 91 -1 N LYS A 91 O GLN A 100 SHEET 1 AA2 2 VAL A 149 ILE A 150 0 SHEET 2 AA2 2 ALA A 176 GLN A 177 -1 O ALA A 176 N ILE A 150 SHEET 1 AA3 2 VAL A 159 LEU A 161 0 SHEET 2 AA3 2 VAL A 167 LEU A 169 -1 O LYS A 168 N LEU A 160 SHEET 1 AA4 5 PHE C 25 ASN C 33 0 SHEET 2 AA4 5 GLN C 38 HIS C 44 -1 O LYS C 41 N GLU C 29 SHEET 3 AA4 5 LEU C 50 ASP C 57 -1 O ILE C 53 N TYR C 40 SHEET 4 AA4 5 GLN C 100 MET C 105 -1 O LEU C 101 N MET C 56 SHEET 5 AA4 5 TYR C 85 LYS C 91 -1 N LYS C 91 O GLN C 100 SHEET 1 AA5 3 GLY C 111 SER C 112 0 SHEET 2 AA5 3 VAL C 159 LEU C 161 -1 O LEU C 161 N GLY C 111 SHEET 3 AA5 3 VAL C 167 LEU C 169 -1 O LYS C 168 N LEU C 160 SHEET 1 AA6 2 VAL C 149 ILE C 150 0 SHEET 2 AA6 2 ALA C 176 GLN C 177 -1 O ALA C 176 N ILE C 150 SSBOND 1 CYS A 234 CYS B 17 1555 1555 2.03 SSBOND 2 CYS C 234 CYS D 17 1555 1555 2.03 LINK C ARG A 180 N TPO A 181 1555 1555 1.33 LINK C TPO A 181 N VAL A 182 1555 1555 1.33 LINK C ASN A 186 N TPO A 187 1555 1555 1.33 LINK C TPO A 187 N PHE A 188 1555 1555 1.33 LINK C ASN C 186 N TPO C 187 1555 1555 1.33 LINK C TPO C 187 N PHE C 188 1555 1555 1.33 LINK O SER A 77 NA NA A 401 1555 1555 2.38 LINK O HIS A 79 NA NA A 401 1555 1555 2.38 LINK O ILE A 82 NA NA A 401 1555 1555 2.45 LINK OG1 THR A 84 NA NA A 401 1555 1555 2.28 LINK O SER C 77 NA NA C 401 1555 1555 2.22 LINK O HIS C 79 NA NA C 401 1555 1555 2.24 LINK O ILE C 82 NA NA C 401 1555 1555 2.29 LINK OG1 THR C 84 NA NA C 401 1555 1555 2.58 LINK NA NA C 401 O HOH C 504 1555 1555 2.21 CRYST1 52.040 167.220 52.780 90.00 119.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019216 0.000000 0.010832 0.00000 SCALE2 0.000000 0.005980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021749 0.00000 CONECT 494 4805 CONECT 510 4805 CONECT 539 4805 CONECT 554 4805 CONECT 1312 1315 CONECT 1315 1312 1316 CONECT 1316 1315 1317 1324 CONECT 1317 1316 1318 1319 CONECT 1318 1317 CONECT 1319 1317 1320 CONECT 1320 1319 1321 1322 1323 CONECT 1321 1320 CONECT 1322 1320 CONECT 1323 1320 CONECT 1324 1316 1325 1326 CONECT 1325 1324 CONECT 1326 1324 CONECT 1361 1367 CONECT 1367 1361 1368 CONECT 1368 1367 1369 1376 CONECT 1369 1368 1370 1371 CONECT 1370 1369 CONECT 1371 1369 1372 CONECT 1372 1371 1373 1374 1375 CONECT 1373 1372 CONECT 1374 1372 CONECT 1375 1372 CONECT 1376 1368 1377 1378 CONECT 1377 1376 CONECT 1378 1376 CONECT 1737 4689 CONECT 2848 4806 CONECT 2864 4806 CONECT 2893 4806 CONECT 2908 4806 CONECT 3654 3660 CONECT 3660 3654 3661 CONECT 3661 3660 3662 3663 CONECT 3662 3661 CONECT 3663 3661 3664 3665 CONECT 3664 3663 CONECT 3665 3663 CONECT 3959 4803 CONECT 4689 1737 CONECT 4803 3959 CONECT 4805 494 510 539 554 CONECT 4806 2848 2864 2893 2908 CONECT 4806 4851 CONECT 4851 4806 MASTER 516 0 5 30 19 0 0 6 4852 4 49 52 END