HEADER DNA BINDING PROTEIN 25-AUG-25 9XY8 TITLE ONE OF A SERIES OF ENGINEERED VARIANTS OF I-ONUI MEGANUCLEASE TITLE 2 TARGETING ALTERED DNA TARGET SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EI-ONUI_P456_CCC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (26-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (26-MER); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS MEGANUCLEASE, STRUCTURE PREDICTION, PROTEIN ENGINEERING, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.WERTHER,B.L.STODDARD REVDAT 1 10-SEP-25 9XY8 0 JRNL AUTH M.A.ESLER,R.WERTHER,P.BRADLEY,B.L.STODDARD JRNL TITL PREDICTION, MODELING AND DESIGN OF PROTEIN-DNA RECOGNITION JRNL TITL 2 VIA COMPUTATIONAL AND MACHINE LEARNING APPROACHES: JRNL TITL 3 ACCOMPLISHMENTS AND REMAINING CHALLENGES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0700 - 5.8516 1.00 1394 155 0.1692 0.2061 REMARK 3 2 5.8516 - 4.6461 1.00 1317 146 0.1677 0.2014 REMARK 3 3 4.6461 - 4.0593 1.00 1282 143 0.1623 0.1904 REMARK 3 4 4.0593 - 3.6883 1.00 1271 141 0.1853 0.2467 REMARK 3 5 3.6883 - 3.4240 1.00 1254 140 0.2013 0.2584 REMARK 3 6 3.4240 - 3.2222 1.00 1260 140 0.2010 0.2808 REMARK 3 7 3.2222 - 3.0609 1.00 1246 138 0.2219 0.3008 REMARK 3 8 3.0609 - 2.9277 1.00 1270 142 0.2296 0.2956 REMARK 3 9 2.9277 - 2.8150 1.00 1227 137 0.2429 0.3188 REMARK 3 10 2.8150 - 2.7179 1.00 1270 140 0.2346 0.3398 REMARK 3 11 2.7179 - 2.6329 1.00 1220 136 0.2176 0.3233 REMARK 3 12 2.6329 - 2.5576 0.99 1260 140 0.2281 0.2926 REMARK 3 13 2.5576 - 2.4903 0.97 1197 133 0.2417 0.3301 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3593 REMARK 3 ANGLE : 0.594 5068 REMARK 3 CHIRALITY : 0.039 572 REMARK 3 PLANARITY : 0.003 459 REMARK 3 DIHEDRAL : 19.639 1952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000299509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54209 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.0, 200MM AMMONIUM REMARK 280 SULFATE, 30% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.61100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.87650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.07950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.87650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.61100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.07950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 -81.24 -124.29 REMARK 500 ASN A 139 -124.02 51.36 REMARK 500 ASN A 167 172.38 176.94 REMARK 500 SER A 230 -118.32 68.03 REMARK 500 ASN A 298 -132.86 58.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 178 OE2 89.5 REMARK 620 3 HOH A 539 O 86.9 91.5 REMARK 620 4 DC B 16 OP1 167.7 84.1 103.7 REMARK 620 5 HOH B 113 O 101.3 167.2 82.4 86.4 REMARK 620 6 DA C 16 OP2 76.0 98.3 160.2 94.5 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLY A 177 O 85.1 REMARK 620 3 HOH A 545 O 93.9 86.9 REMARK 620 4 DA B 17 OP2 94.6 80.4 164.0 REMARK 620 5 DT C 15 OP1 103.1 171.0 88.8 102.4 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9PZ7 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9PZH RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q0H RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q7V RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q7W RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY2 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q7Z RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY1 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY6 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY5 RELATED DB: PDB REMARK 900 SAME CITATION DBREF 9XY8 A 2 301 PDB 9XY8 9XY8 2 301 DBREF 9XY8 B 1 26 PDB 9XY8 9XY8 1 26 DBREF 9XY8 C 1 26 PDB 9XY8 9XY8 1 26 SEQRES 1 A 300 MET ALA SER SER ARG ARG GLU SER ILE ASN PRO TRP ILE SEQRES 2 A 300 LEU THR GLY PHE ALA ASP ALA GLU GLY SER PHE LEU LEU SEQRES 3 A 300 ARG ILE ARG ASN ASN ASN LYS SER SER VAL GLY TYR SER SEQRES 4 A 300 THR GLU LEU GLY PHE GLN ILE THR LEU HIS ASN LYS ASP SEQRES 5 A 300 LYS SER ILE LEU GLU ASN ILE GLN SER THR TRP LYS VAL SEQRES 6 A 300 GLY VAL ILE ALA ASN SER GLY ASP ASN ALA VAL SER LEU SEQRES 7 A 300 LYS VAL THR ARG PHE GLU ASP LEU LYS VAL ILE ILE ASP SEQRES 8 A 300 HIS PHE GLU LYS TYR PRO LEU ILE THR GLN LYS LEU GLY SEQRES 9 A 300 ASP TYR LYS LEU PHE LYS GLN ALA PHE SER VAL MET GLU SEQRES 10 A 300 ASN LYS GLU HIS LEU LYS GLU ASN GLY ILE LYS GLU LEU SEQRES 11 A 300 VAL ARG ILE LYS ALA LYS LEU ASN TRP GLY LEU THR ASP SEQRES 12 A 300 GLU LEU LYS LYS ALA PHE PRO GLU ASN ILE SER LYS GLU SEQRES 13 A 300 ARG SER LEU ILE ASN LYS ASN ILE PRO ASN PHE LYS TRP SEQRES 14 A 300 LEU ALA GLY PHE THR SER GLY GLU GLY THR PHE GLY VAL SEQRES 15 A 300 ASN LEU ILE LYS SER LYS SER LYS LEU GLY VAL GLN VAL SEQRES 16 A 300 GLN LEU ARG PHE SER ILE THR GLN HIS ILE LYS ASP LYS SEQRES 17 A 300 ASN LEU MET ASN SER LEU ILE THR TYR LEU GLY CYS GLY SEQRES 18 A 300 TYR ILE LYS GLU ARG ASN LYS SER GLU PHE SER TRP LEU SEQRES 19 A 300 GLU PHE VAL VAL THR LYS PHE SER ASP ILE ASN ASP LYS SEQRES 20 A 300 ILE ILE PRO VAL PHE GLN GLU ASN THR LEU ILE GLY VAL SEQRES 21 A 300 LYS LEU GLU ASP PHE GLU ASP TRP CYS LYS VAL ALA LYS SEQRES 22 A 300 LEU ILE GLU GLU LYS LYS HIS LEU THR GLU SER GLY LEU SEQRES 23 A 300 ASP GLU ILE LYS LYS ILE LYS LEU ASN MET ASN LYS GLY SEQRES 24 A 300 ARG SEQRES 1 B 26 DG DG DG DT DT DT DC DC DA DC DT DT DA SEQRES 2 B 26 DT DT DC DA DC DC DC DT DT DT DT DA DG SEQRES 1 C 26 DC DC DT DA DA DA DA DG DG DG DT DG DA SEQRES 2 C 26 DA DT DA DA DG DT DG DG DA DA DA DC DC HET CA A 401 1 HET CA A 402 1 HET GOL A 403 14 HET GOL A 404 14 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 CA 2(CA 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *90(H2 O) HELIX 1 AA1 ASN A 11 GLU A 22 1 12 HELIX 2 AA2 ASP A 53 LYS A 65 1 13 HELIX 3 AA3 ARG A 83 TYR A 97 1 15 HELIX 4 AA4 GLN A 102 ASN A 119 1 18 HELIX 5 AA5 LYS A 120 LEU A 123 5 4 HELIX 6 AA6 LYS A 124 ALA A 136 1 13 HELIX 7 AA7 THR A 143 PHE A 150 1 8 HELIX 8 AA8 ASN A 167 GLU A 178 1 12 HELIX 9 AA9 ASP A 208 GLY A 220 1 13 HELIX 10 AB1 LYS A 241 LYS A 248 1 8 HELIX 11 AB2 LYS A 248 ASN A 256 1 9 HELIX 12 AB3 GLY A 260 GLU A 278 1 19 HELIX 13 AB4 LYS A 279 LEU A 282 5 4 HELIX 14 AB5 THR A 283 ASN A 296 1 14 HELIX 15 AB6 MET A 297 ARG A 301 5 5 SHEET 1 AA1 4 GLY A 23 ASN A 31 0 SHEET 2 AA1 4 TYR A 39 HIS A 50 -1 O GLU A 42 N ARG A 28 SHEET 3 AA1 4 ALA A 76 VAL A 81 -1 O VAL A 77 N LEU A 49 SHEET 4 AA1 4 VAL A 68 SER A 72 -1 N ALA A 70 O SER A 78 SHEET 1 AA2 4 GLY A 179 ILE A 186 0 SHEET 2 AA2 4 GLN A 195 HIS A 205 -1 O GLN A 195 N ILE A 186 SHEET 3 AA2 4 PHE A 232 VAL A 239 -1 O LEU A 235 N GLN A 204 SHEET 4 AA2 4 TYR A 223 LYS A 229 -1 N TYR A 223 O VAL A 238 LINK O ALA A 21 CA CA A 401 1555 1555 2.42 LINK OE2 GLU A 22 CA CA A 402 1555 1555 2.29 LINK O GLY A 177 CA CA A 402 1555 1555 2.47 LINK OE2 GLU A 178 CA CA A 401 1555 1555 2.34 LINK CA CA A 401 O HOH A 539 1555 1555 2.44 LINK CA CA A 401 OP1 DC B 16 1555 1555 2.27 LINK CA CA A 401 O HOH B 113 1555 1555 2.38 LINK CA CA A 401 OP2 DA C 16 1555 1555 2.26 LINK CA CA A 402 O HOH A 545 1555 1555 2.40 LINK CA CA A 402 OP2 DA B 17 1555 1555 2.32 LINK CA CA A 402 OP1 DT C 15 1555 1555 2.33 CRYST1 39.222 76.159 167.753 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005961 0.00000 TER 2350 ARG A 301 TER 2876 DG B 26 TER 3415 DC C 26 HETATM 3416 CA CA A 401 -7.407 -4.076 -22.640 1.00 37.14 CA HETATM 3417 CA CA A 402 -12.833 0.489 -20.484 1.00 36.89 CA HETATM 3418 C1 GOL A 403 5.635 11.618 -15.763 1.00 47.94 C HETATM 3419 O1 GOL A 403 5.262 12.533 -16.771 1.00 56.69 O HETATM 3420 C2 GOL A 403 7.138 11.399 -15.807 1.00 41.09 C HETATM 3421 O2 GOL A 403 7.712 12.319 -16.706 1.00 52.48 O HETATM 3422 C3 GOL A 403 7.758 11.551 -14.420 1.00 63.61 C HETATM 3423 O3 GOL A 403 7.870 10.289 -13.794 1.00 58.93 O HETATM 3424 H11 GOL A 403 5.347 12.008 -14.787 1.00 57.35 H HETATM 3425 H12 GOL A 403 5.120 10.670 -15.917 1.00 57.35 H HETATM 3426 HO1 GOL A 403 4.286 12.624 -16.786 1.00 67.86 H HETATM 3427 H2 GOL A 403 7.326 10.384 -16.157 1.00 49.13 H HETATM 3428 HO2 GOL A 403 7.565 13.231 -16.379 1.00 62.80 H HETATM 3429 H31 GOL A 403 8.745 12.005 -14.508 1.00 76.16 H HETATM 3430 H32 GOL A 403 7.137 12.208 -13.811 1.00 76.16 H HETATM 3431 HO3 GOL A 403 8.689 10.263 -13.255 1.00 70.54 H HETATM 3432 C1 GOL A 404 7.670 7.771 -11.157 1.00 54.33 C HETATM 3433 O1 GOL A 404 7.869 8.550 -12.319 1.00 57.46 O HETATM 3434 C2 GOL A 404 8.890 6.888 -10.917 1.00 62.27 C HETATM 3435 O2 GOL A 404 10.032 7.505 -11.475 1.00 67.17 O HETATM 3436 C3 GOL A 404 9.098 6.657 -9.422 1.00 51.24 C HETATM 3437 O3 GOL A 404 10.127 5.710 -9.225 1.00 49.61 O HETATM 3438 H11 GOL A 404 7.512 8.424 -10.298 1.00 65.02 H HETATM 3439 H12 GOL A 404 6.783 7.149 -11.278 1.00 65.02 H HETATM 3440 HO1 GOL A 404 7.059 9.067 -12.508 1.00 68.78 H HETATM 3441 H2 GOL A 404 8.721 5.925 -11.397 1.00 74.55 H HETATM 3442 HO2 GOL A 404 10.193 8.361 -11.027 1.00 80.43 H HETATM 3443 H31 GOL A 404 9.365 7.596 -8.938 1.00 61.31 H HETATM 3444 H32 GOL A 404 8.173 6.294 -8.974 1.00 61.31 H HETATM 3445 HO3 GOL A 404 9.866 4.856 -9.627 1.00 59.36 H HETATM 3446 O HOH A 501 -10.518 -2.217 -21.655 1.00 32.44 O HETATM 3447 O HOH A 502 -10.960 7.447 -42.329 1.00 29.81 O HETATM 3448 O HOH A 503 -10.540 -4.070 -7.510 1.00 46.59 O HETATM 3449 O HOH A 504 -21.408 -1.487 15.222 1.00 53.89 O HETATM 3450 O HOH A 505 -3.610 -6.682 -28.828 1.00 35.12 O HETATM 3451 O HOH A 506 -0.358 -26.217 -43.158 1.00 37.21 O HETATM 3452 O HOH A 507 -3.652 16.000 -29.629 1.00 41.47 O HETATM 3453 O HOH A 508 -1.906 -6.497 -22.551 1.00 32.53 O HETATM 3454 O HOH A 509 2.455 15.950 -32.034 1.00 34.11 O HETATM 3455 O HOH A 510 4.980 -14.209 -50.075 1.00 39.22 O HETATM 3456 O HOH A 511 -16.964 -2.899 -33.578 1.00 32.55 O HETATM 3457 O HOH A 512 -8.645 3.810 1.360 1.00 40.90 O HETATM 3458 O HOH A 513 -2.299 -9.941 -29.685 1.00 35.99 O HETATM 3459 O HOH A 514 -6.799 5.309 -49.076 1.00 34.57 O HETATM 3460 O HOH A 515 -25.055 1.671 -30.124 1.00 33.46 O HETATM 3461 O HOH A 516 -7.524 -20.664 -51.741 1.00 41.48 O HETATM 3462 O HOH A 517 -16.186 4.294 -15.273 1.00 36.22 O HETATM 3463 O HOH A 518 -9.564 -7.464 -55.055 1.00 29.29 O HETATM 3464 O HOH A 519 -9.499 -5.913 -34.516 1.00 35.14 O HETATM 3465 O HOH A 520 -14.045 1.879 -42.673 1.00 31.70 O HETATM 3466 O HOH A 521 -5.254 -0.840 -55.691 1.00 35.23 O HETATM 3467 O HOH A 522 -6.264 -19.121 -34.775 1.00 30.28 O HETATM 3468 O HOH A 523 -6.344 -9.940 -56.274 1.00 42.17 O HETATM 3469 O HOH A 524 -19.545 -0.895 -35.789 1.00 31.81 O HETATM 3470 O HOH A 525 4.534 -6.329 -19.529 1.00 39.92 O HETATM 3471 O HOH A 526 -13.208 -3.000 -31.891 1.00 31.61 O HETATM 3472 O HOH A 527 -8.276 1.093 3.606 1.00 43.61 O HETATM 3473 O HOH A 528 -8.536 13.365 -14.135 1.00 26.14 O HETATM 3474 O HOH A 529 -17.032 2.342 -36.708 1.00 28.73 O HETATM 3475 O HOH A 530 -13.557 -6.000 -46.501 1.00 31.95 O HETATM 3476 O HOH A 531 -12.197 -21.702 -40.829 1.00 42.69 O HETATM 3477 O HOH A 532 -4.893 -5.557 -31.861 1.00 25.05 O HETATM 3478 O HOH A 533 -9.846 -19.233 -48.270 1.00 38.33 O HETATM 3479 O HOH A 534 -7.505 -1.029 -45.565 1.00 32.79 O HETATM 3480 O HOH A 535 -20.388 10.288 -24.621 1.00 36.32 O HETATM 3481 O HOH A 536 6.625 3.797 -25.853 1.00 34.16 O HETATM 3482 O HOH A 537 -6.120 -8.534 -53.092 1.00 42.57 O HETATM 3483 O HOH A 538 -12.730 -11.087 -42.328 1.00 42.65 O HETATM 3484 O HOH A 539 -5.023 -3.908 -23.123 1.00 29.41 O HETATM 3485 O HOH A 540 9.866 -4.888 -25.803 1.00 39.16 O HETATM 3486 O HOH A 541 -14.646 3.538 -11.624 1.00 33.93 O HETATM 3487 O HOH A 542 -14.588 3.623 -22.339 1.00 32.67 O HETATM 3488 O HOH A 543 -11.692 -7.128 -48.308 1.00 39.08 O HETATM 3489 O HOH A 544 -10.901 -21.613 -37.125 1.00 30.52 O HETATM 3490 O HOH A 545 -13.086 2.876 -20.413 1.00 23.87 O HETATM 3491 O HOH A 546 -22.068 10.621 -7.288 1.00 40.03 O HETATM 3492 O HOH A 547 -12.745 -15.442 -46.051 1.00 35.51 O HETATM 3493 O HOH A 548 -11.226 -2.503 -30.103 1.00 32.72 O HETATM 3494 O HOH A 549 -17.870 9.341 -38.829 1.00 33.99 O HETATM 3495 O HOH A 550 -9.905 -12.335 -42.223 1.00 28.46 O HETATM 3496 O HOH A 551 -27.394 1.729 -24.364 1.00 34.23 O HETATM 3497 O HOH A 552 3.895 7.219 -42.729 1.00 38.55 O HETATM 3498 O HOH A 553 1.325 5.462 -50.226 1.00 44.81 O HETATM 3499 O HOH A 554 3.980 11.008 -43.462 1.00 38.98 O HETATM 3500 O HOH A 555 -1.656 12.669 -32.780 1.00 33.44 O HETATM 3501 O HOH A 556 2.511 15.716 -24.474 1.00 43.66 O HETATM 3502 O HOH A 557 5.753 -11.858 -40.300 1.00 32.83 O HETATM 3503 O HOH A 558 7.917 10.318 -22.427 1.00 37.47 O HETATM 3504 O HOH A 559 -11.050 -16.924 -45.693 1.00 35.94 O HETATM 3505 O HOH A 560 -3.503 -0.015 -51.076 1.00 36.80 O HETATM 3506 O HOH A 561 9.142 0.150 -39.231 1.00 46.05 O HETATM 3507 O HOH A 562 -26.500 -6.508 -25.618 1.00 27.56 O HETATM 3508 O HOH A 563 -23.535 6.284 -34.371 1.00 40.96 O HETATM 3509 O HOH A 564 4.237 -27.112 -39.338 1.00 35.79 O HETATM 3510 O HOH A 565 -5.688 -12.906 -24.192 1.00 43.43 O HETATM 3511 O HOH A 566 -7.042 -21.330 -34.019 1.00 35.24 O HETATM 3512 O HOH B 101 -11.657 4.614 -42.592 1.00 26.56 O HETATM 3513 O HOH B 102 -20.102 -4.727 -30.227 1.00 38.92 O HETATM 3514 O HOH B 103 -32.171 -3.335 -38.530 1.00 31.07 O HETATM 3515 O HOH B 104 -10.531 0.186 -46.830 1.00 32.43 O HETATM 3516 O HOH B 105 -30.907 -2.221 -36.180 1.00 40.28 O HETATM 3517 O HOH B 106 -24.727 -7.887 -39.988 1.00 30.82 O HETATM 3518 O HOH B 107 -17.998 1.987 -5.699 1.00 39.76 O HETATM 3519 O HOH B 108 -8.484 -13.200 -18.353 1.00 40.76 O HETATM 3520 O HOH B 109 -22.401 -10.153 -38.079 1.00 45.06 O HETATM 3521 O HOH B 110 -16.338 -6.928 -53.216 1.00 42.08 O HETATM 3522 O HOH B 111 -7.359 -1.045 -48.500 1.00 26.66 O HETATM 3523 O HOH B 112 -19.637 -0.585 -38.245 1.00 35.06 O HETATM 3524 O HOH B 113 -7.294 -5.800 -24.276 1.00 36.75 O HETATM 3525 O HOH B 114 -18.152 1.550 -39.511 1.00 22.85 O HETATM 3526 O HOH B 115 -14.875 -2.356 -41.042 1.00 38.04 O HETATM 3527 O HOH B 116 -19.517 -11.595 -1.346 1.00 45.04 O HETATM 3528 O HOH B 117 -15.713 0.405 -40.820 1.00 32.75 O HETATM 3529 O HOH C 101 -16.781 -8.474 -49.928 1.00 41.89 O HETATM 3530 O HOH C 102 -7.988 -9.284 -37.804 1.00 34.52 O HETATM 3531 O HOH C 103 -18.987 -12.000 -36.293 1.00 45.08 O HETATM 3532 O HOH C 104 -16.017 -12.957 1.315 1.00 50.92 O HETATM 3533 O HOH C 105 -25.602 -5.331 -43.677 1.00 41.72 O HETATM 3534 O HOH C 106 -26.013 -1.770 -20.371 1.00 44.31 O HETATM 3535 O HOH C 107 -10.132 -9.596 -39.261 1.00 37.77 O CONECT 113 3416 CONECT 123 3417 CONECT 1368 3417 CONECT 1377 3416 CONECT 2657 3416 CONECT 2677 3417 CONECT 3167 3417 CONECT 3188 3416 CONECT 3416 113 1377 2657 3188 CONECT 3416 3484 3524 CONECT 3417 123 1368 2677 3167 CONECT 3417 3490 CONECT 3418 3419 3420 3424 3425 CONECT 3419 3418 3426 CONECT 3420 3418 3421 3422 3427 CONECT 3421 3420 3428 CONECT 3422 3420 3423 3429 3430 CONECT 3423 3422 3431 CONECT 3424 3418 CONECT 3425 3418 CONECT 3426 3419 CONECT 3427 3420 CONECT 3428 3421 CONECT 3429 3422 CONECT 3430 3422 CONECT 3431 3423 CONECT 3432 3433 3434 3438 3439 CONECT 3433 3432 3440 CONECT 3434 3432 3435 3436 3441 CONECT 3435 3434 3442 CONECT 3436 3434 3437 3443 3444 CONECT 3437 3436 3445 CONECT 3438 3432 CONECT 3439 3432 CONECT 3440 3433 CONECT 3441 3434 CONECT 3442 3435 CONECT 3443 3436 CONECT 3444 3436 CONECT 3445 3437 CONECT 3484 3416 CONECT 3490 3417 CONECT 3524 3416 MASTER 303 0 4 15 8 0 0 6 3516 3 43 28 END