HEADER DNA BINDING PROTEIN 25-AUG-25 9XYA TITLE ONE OF A SERIES OF ENGINEERED VARIANTS OF I-ONUI MEGANUCLEASE TITLE 2 TARGETING ALTERED DNA TARGET SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EI-ONUI_P456_GGC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (26-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (26-MER); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS MEGANUCLEASE, STRUCTURE PREDICTION, PROTEIN ENGINEERING, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.WERTHER,B.L.STODDARD REVDAT 1 10-SEP-25 9XYA 0 JRNL AUTH M.A.ESLER,R.WERTHER,P.BRADLEY,B.L.STODDARD JRNL TITL PREDICTION, MODELING AND DESIGN OF PROTEIN-DNA RECOGNITION JRNL TITL 2 VIA COMPUTATIONAL AND MACHINE LEARNING APPROACHES: JRNL TITL 3 ACCOMPLISHMENTS AND REMAINING CHALLENGES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 22637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8000 - 5.5471 0.99 1627 157 0.1747 0.2045 REMARK 3 2 5.5471 - 4.4041 1.00 1535 149 0.1792 0.2319 REMARK 3 3 4.4041 - 3.8478 1.00 1521 148 0.1881 0.2417 REMARK 3 4 3.8478 - 3.4961 0.99 1509 146 0.2088 0.2770 REMARK 3 5 3.4961 - 3.2456 0.98 1475 143 0.2152 0.2575 REMARK 3 6 3.2456 - 3.0543 0.99 1451 139 0.2505 0.3256 REMARK 3 7 3.0543 - 2.9014 1.00 1505 146 0.2615 0.3305 REMARK 3 8 2.9014 - 2.7751 1.00 1488 142 0.2729 0.3189 REMARK 3 9 2.7751 - 2.6683 1.00 1461 142 0.2597 0.3426 REMARK 3 10 2.6683 - 2.5762 1.00 1507 146 0.2726 0.3347 REMARK 3 11 2.5762 - 2.4956 1.00 1441 140 0.2616 0.3564 REMARK 3 12 2.4956 - 2.4243 1.00 1495 144 0.2581 0.3244 REMARK 3 13 2.4243 - 2.3605 0.99 1461 141 0.2729 0.3635 REMARK 3 14 2.3605 - 2.3030 0.80 1165 113 0.2911 0.3780 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3560 REMARK 3 ANGLE : 0.894 5029 REMARK 3 CHIRALITY : 0.048 569 REMARK 3 PLANARITY : 0.005 455 REMARK 3 DIHEDRAL : 20.436 1924 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1000299512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22748 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.84900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 6.5, 200MM AMMONIUM REMARK 280 SULFATE, 28% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.77850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.39950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.91900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.39950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.77850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.91900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 ARG A 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 SER A 188 OG REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 SER A 230 OG REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 22 O HOH A 501 2.13 REMARK 500 NZ LYS A 120 O HOH A 502 2.18 REMARK 500 OH TYR A 223 OP1 DA C 6 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 22 O3' DA C 22 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 23 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG C 18 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA C 22 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 -121.50 46.58 REMARK 500 ASN A 167 175.30 177.75 REMARK 500 LYS A 189 30.82 -71.63 REMARK 500 LYS A 191 -84.61 -50.27 REMARK 500 CYS A 221 157.79 171.89 REMARK 500 SER A 230 -82.93 57.25 REMARK 500 LYS A 279 12.82 53.57 REMARK 500 ASN A 298 -122.65 62.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 178 OE2 97.9 REMARK 620 3 HOH A 527 O 83.7 87.3 REMARK 620 4 DC B 14 OP1 176.6 79.9 98.7 REMARK 620 5 HOH B 116 O 100.4 158.9 84.1 82.4 REMARK 620 6 DA C 16 OP2 82.4 99.5 165.3 95.4 93.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLY A 177 O 86.9 REMARK 620 3 HOH A 525 O 92.7 87.0 REMARK 620 4 DA B 15 OP2 96.3 80.3 163.9 REMARK 620 5 DT C 15 OP1 86.2 172.8 95.4 98.5 REMARK 620 6 HOH C 113 O 161.7 100.0 71.0 101.5 87.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9XY8 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9PZ7 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9PZH RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q0H RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q7V RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q7W RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY2 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9Q7Z RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY1 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY6 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY5 RELATED DB: PDB REMARK 900 SAME CITATION REMARK 900 RELATED ID: 9XY9 RELATED DB: PDB REMARK 900 SAME CITATION DBREF 9XYA A 2 301 PDB 9XYA 9XYA 2 301 DBREF 9XYA B -1 24 PDB 9XYA 9XYA -1 24 DBREF 9XYA C 1 26 PDB 9XYA 9XYA 1 26 SEQRES 1 A 300 MET ALA SER SER ARG ARG GLU SER ILE ASN PRO TRP ILE SEQRES 2 A 300 LEU THR GLY PHE ALA ASP ALA GLU GLY SER PHE LEU LEU SEQRES 3 A 300 ARG ILE ARG ASN ASN ASN LYS SER SER VAL GLY TYR SER SEQRES 4 A 300 THR GLU LEU GLY PHE GLN ILE THR LEU HIS ASN LYS ASP SEQRES 5 A 300 LYS SER ILE LEU GLU ASN ILE GLN SER THR TRP LYS VAL SEQRES 6 A 300 GLY VAL ILE ALA ASN SER GLY ASP ASN ALA VAL SER LEU SEQRES 7 A 300 LYS VAL THR ARG PHE GLU ASP LEU LYS VAL ILE ILE ASP SEQRES 8 A 300 HIS PHE GLU LYS TYR PRO LEU ILE THR GLN LYS LEU GLY SEQRES 9 A 300 ASP TYR LYS LEU PHE LYS GLN ALA PHE SER VAL MET GLU SEQRES 10 A 300 ASN LYS GLU HIS LEU LYS GLU ASN GLY ILE LYS GLU LEU SEQRES 11 A 300 VAL ARG ILE LYS ALA LYS LEU ASN TRP GLY LEU THR ASP SEQRES 12 A 300 GLU LEU LYS LYS ALA PHE PRO GLU ASN ILE SER LYS GLU SEQRES 13 A 300 ARG SER LEU ILE ASN LYS ASN ILE PRO ASN PHE LYS TRP SEQRES 14 A 300 LEU ALA GLY PHE THR SER GLY GLU GLY TYR PHE GLY VAL SEQRES 15 A 300 ASN LEU ILE LYS SER LYS SER LYS LEU GLY VAL GLN VAL SEQRES 16 A 300 GLN LEU VAL PHE LYS ILE THR GLN HIS ILE LYS ASP LYS SEQRES 17 A 300 ASN LEU MET ASN SER LEU ILE THR TYR LEU GLY CYS GLY SEQRES 18 A 300 TYR ILE ARG GLU SER ASN LYS SER GLU PHE SER TRP LEU SEQRES 19 A 300 ASN PHE VAL VAL THR LYS PHE SER ASP ILE ASN ASP LYS SEQRES 20 A 300 ILE ILE PRO VAL PHE GLN GLU ASN THR LEU ILE GLY VAL SEQRES 21 A 300 LYS LEU GLU ASP PHE GLU ASP TRP CYS LYS VAL ALA LYS SEQRES 22 A 300 LEU ILE GLU GLU LYS LYS HIS LEU THR GLU SER GLY LEU SEQRES 23 A 300 ASP GLU ILE LYS LYS ILE LYS LEU ASN MET ASN LYS GLY SEQRES 24 A 300 ARG SEQRES 1 B 26 DG DG DG DT DT DT DC DC DA DC DT DT DA SEQRES 2 B 26 DT DT DC DA DG DG DC DT DT DT DT DA DG SEQRES 1 C 26 DC DC DT DA DA DA DA DG DC DC DT DG DA SEQRES 2 C 26 DA DT DA DA DG DT DG DG DA DA DA DC DC HET CA A 401 1 HET CA A 402 1 HET GOL A 403 14 HET EDO A 404 10 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 CA 2(CA 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *86(H2 O) HELIX 1 AA1 ASN A 11 GLU A 22 1 12 HELIX 2 AA2 ASP A 53 LYS A 65 1 13 HELIX 3 AA3 ARG A 83 TYR A 97 1 15 HELIX 4 AA4 GLN A 102 ASN A 119 1 18 HELIX 5 AA5 LYS A 120 LEU A 123 5 4 HELIX 6 AA6 LYS A 124 ALA A 136 1 13 HELIX 7 AA7 THR A 143 LYS A 148 1 6 HELIX 8 AA8 ASN A 167 GLU A 178 1 12 HELIX 9 AA9 ASP A 208 GLY A 220 1 13 HELIX 10 AB1 LYS A 241 ASN A 256 1 16 HELIX 11 AB2 VAL A 261 GLU A 278 1 18 HELIX 12 AB3 LYS A 279 LEU A 282 5 4 HELIX 13 AB4 THR A 283 ASN A 296 1 14 HELIX 14 AB5 MET A 297 ARG A 301 5 5 SHEET 1 AA1 4 GLY A 23 ASN A 31 0 SHEET 2 AA1 4 TYR A 39 HIS A 50 -1 O GLU A 42 N ARG A 28 SHEET 3 AA1 4 ALA A 76 VAL A 81 -1 O VAL A 81 N PHE A 45 SHEET 4 AA1 4 VAL A 68 ASN A 71 -1 N ALA A 70 O SER A 78 SHEET 1 AA2 4 GLY A 179 ILE A 186 0 SHEET 2 AA2 4 GLN A 195 HIS A 205 -1 O GLN A 197 N ASN A 184 SHEET 3 AA2 4 PHE A 232 VAL A 239 -1 O LEU A 235 N GLN A 204 SHEET 4 AA2 4 TYR A 223 LYS A 229 -1 N SER A 227 O TRP A 234 LINK O ALA A 21 CA CA A 402 1555 1555 2.35 LINK OE2 GLU A 22 CA CA A 401 1555 1555 2.32 LINK O GLY A 177 CA CA A 401 1555 1555 2.34 LINK OE2 GLU A 178 CA CA A 402 1555 1555 2.37 LINK CA CA A 401 O HOH A 525 1555 1555 2.38 LINK CA CA A 401 OP2 DA B 15 1555 1555 2.32 LINK CA CA A 401 OP1 DT C 15 1555 1555 2.32 LINK CA CA A 401 O HOH C 113 1555 1555 2.54 LINK CA CA A 402 O HOH A 527 1555 1555 2.42 LINK CA CA A 402 OP1 DC B 14 1555 1555 2.31 LINK CA CA A 402 O HOH B 116 1555 1555 2.43 LINK CA CA A 402 OP2 DA C 16 1555 1555 2.28 CRYST1 39.557 75.838 166.799 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025280 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005995 0.00000 TER 2321 ARG A 301 TER 2850 DG B 24 TER 3383 DC C 26 HETATM 3384 CA CA A 401 -12.959 0.893 -20.186 1.00 44.15 CA HETATM 3385 CA CA A 402 -7.540 -3.713 -22.455 0.83 38.45 CA HETATM 3386 C1 GOL A 403 6.983 12.001 -16.459 1.00 56.84 C HETATM 3387 O1 GOL A 403 7.692 10.895 -16.968 1.00 63.68 O HETATM 3388 C2 GOL A 403 6.414 11.696 -15.081 1.00 62.12 C HETATM 3389 O2 GOL A 403 7.214 10.783 -14.345 1.00 63.07 O HETATM 3390 C3 GOL A 403 6.311 13.026 -14.353 1.00 64.39 C HETATM 3391 O3 GOL A 403 5.421 13.848 -15.071 1.00 66.01 O HETATM 3392 H11 GOL A 403 6.170 12.256 -17.139 1.00 68.21 H HETATM 3393 H12 GOL A 403 7.649 12.862 -16.394 1.00 68.21 H HETATM 3394 HO1 GOL A 403 7.992 11.092 -17.881 1.00 76.42 H HETATM 3395 H2 GOL A 403 5.410 11.289 -15.203 1.00 74.55 H HETATM 3396 HO2 GOL A 403 8.110 11.160 -14.223 1.00 75.69 H HETATM 3397 H31 GOL A 403 5.942 12.870 -13.339 1.00 77.27 H HETATM 3398 H32 GOL A 403 7.292 13.498 -14.295 1.00 77.27 H HETATM 3399 HO3 GOL A 403 4.833 14.319 -14.443 1.00 79.21 H HETATM 3400 C1 EDO A 404 8.898 6.768 -10.608 1.00 62.56 C HETATM 3401 O1 EDO A 404 9.129 7.082 -9.229 1.00 69.56 O HETATM 3402 C2 EDO A 404 8.592 8.048 -11.376 1.00 62.71 C HETATM 3403 O2 EDO A 404 7.259 8.479 -11.074 1.00 58.14 O HETATM 3404 H11 EDO A 404 9.782 6.286 -11.031 1.00 75.07 H HETATM 3405 H12 EDO A 404 8.058 6.076 -10.694 1.00 75.07 H HETATM 3406 HO1 EDO A 404 9.324 6.270 -8.742 1.00 83.47 H HETATM 3407 H21 EDO A 404 9.304 8.827 -11.096 1.00 75.25 H HETATM 3408 H22 EDO A 404 8.687 7.868 -12.449 1.00 75.25 H HETATM 3409 HO2 EDO A 404 7.064 9.292 -11.561 1.00 69.76 H HETATM 3410 O HOH A 501 -10.735 -2.047 -21.346 1.00 40.48 O HETATM 3411 O HOH A 502 -4.954 -0.410 -55.052 1.00 53.14 O HETATM 3412 O HOH A 503 -2.159 -6.120 -22.144 1.00 40.94 O HETATM 3413 O HOH A 504 -10.871 7.523 -42.287 1.00 42.11 O HETATM 3414 O HOH A 505 3.696 -21.119 -53.548 1.00 58.29 O HETATM 3415 O HOH A 506 -7.484 -0.642 -45.320 1.00 36.19 O HETATM 3416 O HOH A 507 -12.354 -1.606 -27.549 1.00 44.68 O HETATM 3417 O HOH A 508 -5.654 -27.479 -47.053 1.00 46.60 O HETATM 3418 O HOH A 509 -13.604 2.280 -42.867 1.00 40.68 O HETATM 3419 O HOH A 510 -22.659 -1.649 8.720 1.00 70.86 O HETATM 3420 O HOH A 511 -2.145 -17.889 -36.246 1.00 40.92 O HETATM 3421 O HOH A 512 -24.549 -3.189 -28.294 1.00 41.78 O HETATM 3422 O HOH A 513 -16.193 4.377 -15.107 1.00 46.14 O HETATM 3423 O HOH A 514 -6.156 -11.410 -36.942 1.00 40.74 O HETATM 3424 O HOH A 515 -8.826 13.447 -13.781 1.00 45.95 O HETATM 3425 O HOH A 516 -15.004 3.895 -22.448 1.00 42.86 O HETATM 3426 O HOH A 517 9.274 -3.065 -17.725 1.00 58.71 O HETATM 3427 O HOH A 518 -17.034 2.424 -36.755 1.00 35.54 O HETATM 3428 O HOH A 519 -29.942 1.210 -28.502 1.00 50.71 O HETATM 3429 O HOH A 520 -27.013 -5.149 -29.494 1.00 44.79 O HETATM 3430 O HOH A 521 -13.284 -2.943 -31.693 1.00 37.52 O HETATM 3431 O HOH A 522 -2.124 -9.768 -29.404 1.00 36.39 O HETATM 3432 O HOH A 523 -25.318 1.648 -30.360 1.00 38.01 O HETATM 3433 O HOH A 524 -3.383 -17.346 -53.239 1.00 61.28 O HETATM 3434 O HOH A 525 -13.218 3.255 -20.000 1.00 43.04 O HETATM 3435 O HOH A 526 -13.326 -10.347 -42.011 1.00 42.91 O HETATM 3436 O HOH A 527 -5.156 -3.545 -22.802 1.00 38.36 O HETATM 3437 O HOH A 528 -19.536 -0.522 -35.723 1.00 39.77 O HETATM 3438 O HOH A 529 -27.181 2.844 -24.811 1.00 39.36 O HETATM 3439 O HOH A 530 -17.300 -2.615 -33.130 1.00 42.71 O HETATM 3440 O HOH A 531 -10.748 -2.316 -30.048 1.00 36.62 O HETATM 3441 O HOH A 532 -20.415 10.584 -24.783 1.00 44.44 O HETATM 3442 O HOH A 533 -1.460 -9.787 -27.044 1.00 39.18 O HETATM 3443 O HOH A 534 -9.605 -23.290 -47.057 1.00 50.01 O HETATM 3444 O HOH A 535 6.453 -7.943 -30.999 1.00 46.59 O HETATM 3445 O HOH A 536 -15.558 6.188 -19.186 1.00 40.96 O HETATM 3446 O HOH A 537 6.073 8.594 -38.428 1.00 47.21 O HETATM 3447 O HOH A 538 -7.838 -15.570 -40.119 1.00 45.85 O HETATM 3448 O HOH A 539 3.869 11.016 -43.005 1.00 40.99 O HETATM 3449 O HOH A 540 -9.861 -12.060 -41.962 1.00 40.95 O HETATM 3450 O HOH A 541 -18.046 9.298 -38.464 1.00 42.00 O HETATM 3451 O HOH A 542 -6.370 -15.899 -20.023 1.00 59.59 O HETATM 3452 O HOH A 543 4.247 7.515 -42.435 1.00 37.68 O HETATM 3453 O HOH A 544 8.221 13.414 -34.736 1.00 42.31 O HETATM 3454 O HOH A 545 -5.431 -4.201 -1.234 1.00 51.42 O HETATM 3455 O HOH A 546 -12.977 -15.357 -45.593 1.00 47.97 O HETATM 3456 O HOH A 547 0.725 -12.816 -58.764 1.00 58.47 O HETATM 3457 O HOH A 548 -23.153 6.238 -34.344 1.00 48.98 O HETATM 3458 O HOH A 549 -12.599 -21.708 -40.400 1.00 45.72 O HETATM 3459 O HOH A 550 -2.680 -5.198 -24.737 1.00 37.71 O HETATM 3460 O HOH A 551 -2.609 -7.233 -26.264 1.00 47.06 O HETATM 3461 O HOH A 552 -10.935 -21.709 -48.171 1.00 41.89 O HETATM 3462 O HOH A 553 -5.284 -5.720 -25.271 1.00 42.80 O HETATM 3463 O HOH A 554 -18.455 2.026 -18.906 1.00 43.16 O HETATM 3464 O HOH A 555 -16.104 3.722 -18.354 1.00 49.10 O HETATM 3465 O HOH A 556 -10.883 -24.919 -44.985 1.00 53.39 O HETATM 3466 O HOH A 557 -15.337 0.913 -41.382 1.00 39.24 O HETATM 3467 O HOH B 101 -12.819 8.163 -43.820 1.00 45.12 O HETATM 3468 O HOH B 102 -19.667 3.572 -40.761 1.00 50.61 O HETATM 3469 O HOH B 103 -19.608 2.153 -14.560 1.00 48.84 O HETATM 3470 O HOH B 104 -4.580 -7.804 -22.232 1.00 42.59 O HETATM 3471 O HOH B 105 -11.402 4.854 -42.316 1.00 37.77 O HETATM 3472 O HOH B 106 -24.172 0.112 -37.242 1.00 49.79 O HETATM 3473 O HOH B 107 -9.162 4.980 -51.792 1.00 54.22 O HETATM 3474 O HOH B 108 -11.820 1.369 -54.778 1.00 44.97 O HETATM 3475 O HOH B 109 -14.079 -3.403 -4.613 1.00 53.99 O HETATM 3476 O HOH B 110 -17.504 0.481 -17.087 1.00 47.56 O HETATM 3477 O HOH B 111 -18.348 -3.900 -14.567 1.00 54.54 O HETATM 3478 O HOH B 112 -16.370 -3.518 -16.949 1.00 46.51 O HETATM 3479 O HOH B 113 -11.183 -7.585 -11.358 1.00 45.78 O HETATM 3480 O HOH B 114 -10.459 0.392 -46.658 1.00 39.28 O HETATM 3481 O HOH B 115 -14.838 -1.864 -41.708 1.00 41.74 O HETATM 3482 O HOH B 116 -7.386 -5.565 -24.023 1.00 43.18 O HETATM 3483 O HOH C 101 -14.628 -11.584 -32.000 1.00 41.56 O HETATM 3484 O HOH C 102 -8.632 -13.858 -35.948 1.00 42.85 O HETATM 3485 O HOH C 103 -4.084 -6.827 -28.413 1.00 37.49 O HETATM 3486 O HOH C 104 -17.660 -5.065 -19.033 1.00 42.49 O HETATM 3487 O HOH C 105 -18.208 3.258 -21.149 1.00 46.51 O HETATM 3488 O HOH C 106 -12.838 -6.313 -21.714 1.00 45.40 O HETATM 3489 O HOH C 107 -17.833 -13.911 -16.214 1.00 54.12 O HETATM 3490 O HOH C 108 -4.639 -10.108 -28.923 1.00 42.84 O HETATM 3491 O HOH C 109 -4.922 -5.314 -31.475 1.00 33.37 O HETATM 3492 O HOH C 110 -7.509 -8.956 -37.754 1.00 32.82 O HETATM 3493 O HOH C 111 -9.560 -13.824 -38.778 1.00 43.00 O HETATM 3494 O HOH C 112 -10.203 -9.380 -38.972 1.00 47.09 O HETATM 3495 O HOH C 113 -14.721 1.395 -18.432 1.00 47.20 O CONECT 108 3385 CONECT 118 3384 CONECT 1349 3384 CONECT 1358 3385 CONECT 2625 3385 CONECT 2645 3384 CONECT 3135 3384 CONECT 3156 3385 CONECT 3384 118 1349 2645 3135 CONECT 3384 3434 3495 CONECT 3385 108 1358 2625 3156 CONECT 3385 3436 3482 CONECT 3386 3387 3388 3392 3393 CONECT 3387 3386 3394 CONECT 3388 3386 3389 3390 3395 CONECT 3389 3388 3396 CONECT 3390 3388 3391 3397 3398 CONECT 3391 3390 3399 CONECT 3392 3386 CONECT 3393 3386 CONECT 3394 3387 CONECT 3395 3388 CONECT 3396 3389 CONECT 3397 3390 CONECT 3398 3390 CONECT 3399 3391 CONECT 3400 3401 3402 3404 3405 CONECT 3401 3400 3406 CONECT 3402 3400 3403 3407 3408 CONECT 3403 3402 3409 CONECT 3404 3400 CONECT 3405 3400 CONECT 3406 3401 CONECT 3407 3402 CONECT 3408 3402 CONECT 3409 3403 CONECT 3434 3384 CONECT 3436 3385 CONECT 3482 3385 CONECT 3495 3384 MASTER 372 0 4 14 8 0 0 6 3478 3 40 28 END