HEADER OXIDOREDUCTASE 28-AUG-25 9Y0P TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI DSBA C33A MUTANT IN COMPLEX WITH TITLE 2 A PEPTIDE DERIVED FROM LPTD - BINDING MODE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: MATURE FORM OF THE PROTEIN WITHOUT THE SIGNAL COMPND 7 SEQUENCE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE FROM LPS-ASSEMBLY PROTEIN LPTD; COMPND 10 CHAIN: D, B; COMPND 11 SYNONYM: ORGANIC SOLVENT TOLERANCE PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562 KEYWDS THIOL OXIDASE MUTANT, BACTERIAL FOLDASE, THIOREDOXIN FOLD, COMPLEX, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.R.CUNLIFFE,B.HERAS,J.J.PAXMAN REVDAT 1 25-MAR-26 9Y0P 0 JRNL AUTH T.R.CUNLIFFE,G.WANG,S.PENNING,P.SUBEDI,M.TOTSIKA,J.J.PAXMAN, JRNL AUTH 2 B.HERAS JRNL TITL THE CIS-PROLINE LOCK, A CONSERVED SCAFFOLD FOR CATALYSIS IN JRNL TITL 2 THIOREDOXIN-FOLD OXIDOREDUCTASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 76701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8200 - 4.4600 1.00 2810 158 0.1723 0.1900 REMARK 3 2 4.4600 - 3.5400 1.00 2725 125 0.1486 0.1680 REMARK 3 3 3.5400 - 3.0900 1.00 2665 120 0.1669 0.1638 REMARK 3 4 3.0900 - 2.8100 1.00 2674 139 0.1781 0.2141 REMARK 3 5 2.8100 - 2.6100 1.00 2619 147 0.1733 0.1909 REMARK 3 6 2.6100 - 2.4500 1.00 2640 136 0.1793 0.2161 REMARK 3 7 2.4500 - 2.3300 1.00 2612 133 0.1753 0.1903 REMARK 3 8 2.3300 - 2.2300 1.00 2625 135 0.1717 0.2089 REMARK 3 9 2.2300 - 2.1400 1.00 2616 138 0.1736 0.1802 REMARK 3 10 2.1400 - 2.0700 1.00 2618 128 0.1714 0.1967 REMARK 3 11 2.0700 - 2.0000 1.00 2585 160 0.2071 0.2428 REMARK 3 12 2.0000 - 1.9500 1.00 2593 132 0.2044 0.2431 REMARK 3 13 1.9500 - 1.9000 1.00 2595 145 0.1962 0.2013 REMARK 3 14 1.9000 - 1.8500 0.99 2568 143 0.1952 0.2037 REMARK 3 15 1.8500 - 1.8100 0.99 2597 133 0.1997 0.2139 REMARK 3 16 1.8100 - 1.7700 0.99 2587 133 0.2181 0.2398 REMARK 3 17 1.7700 - 1.7300 0.99 2539 152 0.2456 0.2708 REMARK 3 18 1.7300 - 1.7000 0.99 2545 163 0.2627 0.2933 REMARK 3 19 1.7000 - 1.6700 1.00 2617 117 0.2936 0.2944 REMARK 3 20 1.6700 - 1.6400 1.00 2572 136 0.3009 0.3125 REMARK 3 21 1.6400 - 1.6200 1.00 2575 154 0.3169 0.3289 REMARK 3 22 1.6200 - 1.5900 1.00 2539 143 0.2757 0.2587 REMARK 3 23 1.5900 - 1.5700 1.00 2614 134 0.2542 0.2766 REMARK 3 24 1.5700 - 1.5500 1.00 2581 145 0.2488 0.2860 REMARK 3 25 1.5500 - 1.5200 1.00 2568 134 0.2472 0.2216 REMARK 3 26 1.5200 - 1.5000 1.00 2617 123 0.2522 0.2710 REMARK 3 27 1.5000 - 1.4900 1.00 2567 138 0.2656 0.3027 REMARK 3 28 1.4900 - 1.4700 0.92 2359 135 0.3039 0.3364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3247 REMARK 3 ANGLE : 0.794 4388 REMARK 3 CHIRALITY : 0.069 474 REMARK 3 PLANARITY : 0.005 575 REMARK 3 DIHEDRAL : 17.909 1189 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2844 -0.9558 -37.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.1912 REMARK 3 T33: 0.1335 T12: -0.0440 REMARK 3 T13: 0.0410 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 3.3018 L22: 5.3913 REMARK 3 L33: 2.9386 L12: -1.3832 REMARK 3 L13: -0.3706 L23: 1.3496 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.2407 S13: 0.2256 REMARK 3 S21: -0.4636 S22: 0.1202 S23: -0.4817 REMARK 3 S31: -0.2915 S32: -0.0160 S33: -0.1336 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2454 -5.0833 -26.0855 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.1360 REMARK 3 T33: 0.1459 T12: -0.0048 REMARK 3 T13: 0.0015 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.3127 L22: 2.5119 REMARK 3 L33: 2.9202 L12: 1.1320 REMARK 3 L13: -0.4681 L23: -0.5698 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: 0.1113 S13: 0.0592 REMARK 3 S21: -0.0112 S22: 0.0767 S23: 0.1142 REMARK 3 S31: -0.0516 S32: -0.1958 S33: -0.0664 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9168 -16.6814 -21.1611 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1185 REMARK 3 T33: 0.1883 T12: 0.0036 REMARK 3 T13: 0.0297 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.8176 L22: 3.3579 REMARK 3 L33: 3.6077 L12: 1.5040 REMARK 3 L13: 0.6425 L23: 1.3594 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0094 S13: 0.0374 REMARK 3 S21: 0.0291 S22: 0.0729 S23: 0.2519 REMARK 3 S31: -0.0347 S32: -0.1344 S33: -0.0649 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5401 -4.4281 -31.4575 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.1439 REMARK 3 T33: 0.1105 T12: -0.0027 REMARK 3 T13: 0.0139 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.4680 L22: 4.1752 REMARK 3 L33: 0.6758 L12: 1.4863 REMARK 3 L13: 0.0315 L23: 0.6991 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: 0.1568 S13: 0.0904 REMARK 3 S21: -0.1563 S22: 0.1487 S23: -0.0441 REMARK 3 S31: -0.0122 S32: -0.0201 S33: -0.0800 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.8957 -7.3676 -27.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.2189 REMARK 3 T33: 0.1055 T12: 0.0041 REMARK 3 T13: 0.0107 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 5.0620 L22: 4.8170 REMARK 3 L33: 2.8781 L12: -0.9156 REMARK 3 L13: -0.1924 L23: 0.4336 REMARK 3 S TENSOR REMARK 3 S11: -0.1487 S12: -0.5490 S13: -0.0187 REMARK 3 S21: 0.6393 S22: 0.0738 S23: 0.1282 REMARK 3 S31: 0.3196 S32: -0.1344 S33: 0.0725 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 22 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.1318 0.3555 -35.6829 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.2020 REMARK 3 T33: 0.1612 T12: -0.0006 REMARK 3 T13: -0.0157 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.2601 L22: 3.1956 REMARK 3 L33: 3.0143 L12: 0.1252 REMARK 3 L13: -0.5012 L23: 0.1117 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.3151 S13: 0.0508 REMARK 3 S21: 0.2555 S22: -0.0328 S23: -0.2467 REMARK 3 S31: -0.0708 S32: 0.3528 S33: 0.0054 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 67 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1358 -1.3399 -47.1325 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.2028 REMARK 3 T33: 0.1676 T12: -0.0206 REMARK 3 T13: 0.0306 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 3.2447 L22: 4.2493 REMARK 3 L33: 2.0244 L12: -0.9347 REMARK 3 L13: -0.2657 L23: 0.6069 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.2163 S13: 0.1290 REMARK 3 S21: -0.2097 S22: -0.1418 S23: -0.4624 REMARK 3 S31: -0.1078 S32: 0.3605 S33: 0.0794 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5913 -14.2512 -45.1052 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: 0.1128 REMARK 3 T33: 0.1421 T12: 0.0192 REMARK 3 T13: -0.0099 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 8.8256 L22: 2.0551 REMARK 3 L33: 1.8062 L12: -0.5533 REMARK 3 L13: -1.9446 L23: -0.4044 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: 0.0968 S13: -0.1428 REMARK 3 S21: 0.0607 S22: -0.0026 S23: -0.1996 REMARK 3 S31: 0.0634 S32: 0.0683 S33: 0.0766 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 145 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3087 -0.3615 -28.6751 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1918 REMARK 3 T33: 0.1354 T12: 0.0149 REMARK 3 T13: 0.0153 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 4.0335 L22: 4.3143 REMARK 3 L33: 6.3770 L12: 0.7178 REMARK 3 L13: 0.1432 L23: 1.3028 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.4986 S13: 0.2142 REMARK 3 S21: 0.4002 S22: -0.0279 S23: 0.0964 REMARK 3 S31: -0.2419 S32: 0.0294 S33: 0.0149 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9789 4.7164 -42.7983 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.2553 REMARK 3 T33: 0.2813 T12: 0.0721 REMARK 3 T13: -0.0208 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 5.4890 L22: 7.2239 REMARK 3 L33: 2.0014 L12: 0.3672 REMARK 3 L13: -0.2846 L23: 3.2699 REMARK 3 S TENSOR REMARK 3 S11: 0.0777 S12: 0.2258 S13: 0.1477 REMARK 3 S21: -0.7371 S22: -0.1334 S23: 0.7018 REMARK 3 S31: -1.3901 S32: -0.9349 S33: 0.0618 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8587 -7.7299 -20.3411 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.2014 REMARK 3 T33: 0.2144 T12: -0.0311 REMARK 3 T13: -0.0111 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 5.7353 L22: 2.0005 REMARK 3 L33: 4.8068 L12: -1.4382 REMARK 3 L13: 0.1003 L23: -1.5970 REMARK 3 S TENSOR REMARK 3 S11: 0.1946 S12: 0.0439 S13: -0.2420 REMARK 3 S21: 0.6005 S22: -0.2773 S23: -0.6954 REMARK 3 S31: -0.0376 S32: 0.3201 S33: 0.0821 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9Y0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1000299677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76833 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 43.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.10500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.25150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.66750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.25150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.10500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.66750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 SER C 0 REMARK 465 LYS C 189 REMARK 465 SER D 13 REMARK 465 NH2 D 14 REMARK 465 VAL B 11 REMARK 465 PRO B 12 REMARK 465 SER B 13 REMARK 465 NH2 B 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 466 O HOH A 485 1.51 REMARK 500 O HOH C 421 O HOH C 469 1.59 REMARK 500 O THR C 168 O HOH C 301 1.62 REMARK 500 O HOH A 403 O HOH A 509 1.64 REMARK 500 O HOH C 420 O HOH C 446 1.65 REMARK 500 O HOH C 307 O HOH C 447 1.72 REMARK 500 O3 NO3 C 203 O HOH C 302 1.76 REMARK 500 O GLY D 10 O HOH D 101 1.84 REMARK 500 OD1 ASP C 86 O HOH C 303 1.89 REMARK 500 O HOH A 333 O HOH A 428 1.91 REMARK 500 O HOH A 500 O HOH A 501 1.98 REMARK 500 O HOH A 320 O HOH A 498 2.01 REMARK 500 OE1 GLU A 120 O HOH A 301 2.05 REMARK 500 O HOH C 384 O HOH C 447 2.05 REMARK 500 O HOH C 308 O HOH C 463 2.05 REMARK 500 O3 SO4 A 204 O HOH A 302 2.05 REMARK 500 O HOH A 316 O HOH A 330 2.06 REMARK 500 O HOH C 442 O HOH C 480 2.06 REMARK 500 O HOH B 105 O HOH B 108 2.07 REMARK 500 O HOH A 418 O HOH A 432 2.08 REMARK 500 OE1 GLN A 35 O HOH A 303 2.09 REMARK 500 OD1 ASP C 86 O HOH C 304 2.12 REMARK 500 O HOH C 474 O HOH C 476 2.14 REMARK 500 O HOH A 434 O HOH A 487 2.15 REMARK 500 O HOH A 464 O HOH A 509 2.16 REMARK 500 O HOH C 365 O HOH C 418 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 345 O HOH D 108 2455 1.89 REMARK 500 O HOH A 456 O HOH A 520 3544 1.94 REMARK 500 O HOH A 477 O HOH D 108 2455 2.03 REMARK 500 O HOH A 341 O HOH D 101 2455 2.10 REMARK 500 O HOH A 486 O HOH C 444 1655 2.12 REMARK 500 O HOH A 401 O HOH A 520 3544 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 2 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -90.43 -106.04 REMARK 500 LYS A 98 -63.42 -102.89 REMARK 500 LYS C 7 -89.47 -100.62 REMARK 500 SER C 169 -72.44 -90.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 531 DISTANCE = 5.83 ANGSTROMS DBREF 9Y0P A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 9Y0P C 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 9Y0P D 2 13 UNP P31554 LPTD_ECOLI 26 37 DBREF 9Y0P B 2 13 UNP P31554 LPTD_ECOLI 26 37 SEQADV 9Y0P SER A 0 UNP P0AEG4 EXPRESSION TAG SEQADV 9Y0P ALA A 33 UNP P0AEG4 CYS 52 ENGINEERED MUTATION SEQADV 9Y0P SER C 0 UNP P0AEG4 EXPRESSION TAG SEQADV 9Y0P ALA C 33 UNP P0AEG4 CYS 52 ENGINEERED MUTATION SEQADV 9Y0P ACE D 1 UNP P31554 ACETYLATION SEQADV 9Y0P NH2 D 14 UNP P31554 AMIDATION SEQADV 9Y0P ACE B 1 UNP P31554 ACETYLATION SEQADV 9Y0P NH2 B 14 UNP P31554 AMIDATION SEQRES 1 A 190 SER ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU SEQRES 2 A 190 GLU LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE SEQRES 3 A 190 PHE SER PHE PHE CYS PRO HIS ALA TYR GLN PHE GLU GLU SEQRES 4 A 190 VAL LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO SEQRES 5 A 190 GLU GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET SEQRES 6 A 190 GLY GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 A 190 VAL ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL SEQRES 8 A 190 PRO LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SEQRES 9 A 190 SER ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY SEQRES 10 A 190 ILE LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 A 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 A 190 ALA ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL SEQRES 13 A 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 A 190 SER ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR SEQRES 15 A 190 VAL LYS TYR LEU SER GLU LYS LYS SEQRES 1 C 190 SER ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU SEQRES 2 C 190 GLU LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE SEQRES 3 C 190 PHE SER PHE PHE CYS PRO HIS ALA TYR GLN PHE GLU GLU SEQRES 4 C 190 VAL LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO SEQRES 5 C 190 GLU GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET SEQRES 6 C 190 GLY GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA SEQRES 7 C 190 VAL ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL SEQRES 8 C 190 PRO LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SEQRES 9 C 190 SER ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY SEQRES 10 C 190 ILE LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE SEQRES 11 C 190 VAL VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA SEQRES 12 C 190 ALA ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL SEQRES 13 C 190 ASN GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SEQRES 14 C 190 SER ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR SEQRES 15 C 190 VAL LYS TYR LEU SER GLU LYS LYS SEQRES 1 D 14 ACE ASP LEU ALA SER GLN CYS MET LEU GLY VAL PRO SER SEQRES 2 D 14 NH2 SEQRES 1 B 14 ACE ASP LEU ALA SER GLN CYS MET LEU GLY VAL PRO SER SEQRES 2 B 14 NH2 HET ACE D 1 3 HET ACE B 1 3 HET GOL A 201 14 HET NO3 A 202 4 HET NO3 A 203 4 HET SO4 A 204 5 HET SO4 A 205 5 HET NO3 A 206 4 HET NO3 C 201 4 HET GOL C 202 14 HET NO3 C 203 4 HETNAM ACE ACETYL GROUP HETNAM GOL GLYCEROL HETNAM NO3 NITRATE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 NO3 5(N O3 1-) FORMUL 8 SO4 2(O4 S 2-) FORMUL 14 HOH *436(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 66 GLY A 83 1 18 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS C 30 VAL C 39 1 10 HELIX 11 AB2 HIS C 41 LEU C 50 1 10 HELIX 12 AB3 GLY C 66 GLY C 83 1 18 HELIX 13 AB4 VAL C 84 LYS C 98 1 15 HELIX 14 AB5 SER C 104 ALA C 115 1 12 HELIX 15 AB6 LYS C 118 ASN C 127 1 10 HELIX 16 AB7 SER C 128 VAL C 145 1 18 HELIX 17 AB8 PRO C 163 MET C 166 5 4 HELIX 18 AB9 ASN C 170 GLU C 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N GLU A 24 SHEET 1 AA2 2 GLY A 149 VAL A 150 0 SHEET 2 AA2 2 CYS B 7 MET B 8 -1 O CYS B 7 N VAL A 150 SHEET 1 AA3 5 TYR C 9 THR C 11 0 SHEET 2 AA3 5 TYR C 159 LEU C 161 -1 O GLN C 160 N THR C 10 SHEET 3 AA3 5 ALA C 152 VAL C 155 -1 N VAL C 155 O TYR C 159 SHEET 4 AA3 5 VAL C 22 PHE C 26 -1 N LEU C 23 O PHE C 154 SHEET 5 AA3 5 MET C 56 HIS C 60 1 O THR C 57 N GLU C 24 SHEET 1 AA4 2 GLY C 149 VAL C 150 0 SHEET 2 AA4 2 CYS D 7 MET D 8 -1 O CYS D 7 N VAL C 150 SSBOND 1 CYS A 30 CYS B 7 1555 1555 2.08 SSBOND 2 CYS C 30 CYS D 7 1555 1555 2.07 LINK C ACE D 1 N ASP D 2 1555 1555 1.35 LINK C ACE B 1 N ASP B 2 1555 1555 1.34 CISPEP 1 VAL A 150 PRO A 151 0 -6.93 CISPEP 2 VAL C 150 PRO C 151 0 -6.52 CRYST1 68.210 79.335 82.503 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012121 0.00000 CONECT 247 3120 CONECT 1752 3040 CONECT 2996 2997 2998 2999 CONECT 2997 2996 CONECT 2998 2996 CONECT 2999 2996 CONECT 3040 1752 CONECT 3076 3077 3078 3079 CONECT 3077 3076 CONECT 3078 3076 CONECT 3079 3076 CONECT 3120 247 CONECT 3150 3151 3152 3156 3157 CONECT 3151 3150 3158 CONECT 3152 3150 3153 3154 3159 CONECT 3153 3152 3160 CONECT 3154 3152 3155 3161 3162 CONECT 3155 3154 3163 CONECT 3156 3150 CONECT 3157 3150 CONECT 3158 3151 CONECT 3159 3152 CONECT 3160 3153 CONECT 3161 3154 CONECT 3162 3154 CONECT 3163 3155 CONECT 3164 3165 3166 3167 CONECT 3165 3164 CONECT 3166 3164 CONECT 3167 3164 CONECT 3168 3169 3170 3171 CONECT 3169 3168 CONECT 3170 3168 CONECT 3171 3168 CONECT 3172 3173 3174 3175 3176 CONECT 3173 3172 CONECT 3174 3172 CONECT 3175 3172 CONECT 3176 3172 CONECT 3177 3178 3179 3180 3181 CONECT 3178 3177 CONECT 3179 3177 CONECT 3180 3177 CONECT 3181 3177 CONECT 3182 3183 3184 3185 CONECT 3183 3182 CONECT 3184 3182 CONECT 3185 3182 CONECT 3186 3187 3188 3189 CONECT 3187 3186 CONECT 3188 3186 CONECT 3189 3186 CONECT 3190 3191 3192 3196 3197 CONECT 3191 3190 3198 CONECT 3192 3190 3193 3194 3199 CONECT 3193 3192 3200 CONECT 3194 3192 3195 3201 3202 CONECT 3195 3194 3203 CONECT 3196 3190 CONECT 3197 3190 CONECT 3198 3191 CONECT 3199 3192 CONECT 3200 3193 CONECT 3201 3194 CONECT 3202 3194 CONECT 3203 3195 CONECT 3204 3205 3206 3207 CONECT 3205 3204 CONECT 3206 3204 CONECT 3207 3204 MASTER 525 0 11 18 14 0 0 6 3582 4 70 34 END