HEADER LYASE 29-AUG-25 9Y1P TITLE C387S VARIANT OF D-ORNITHINE/D-LYSINE DECARBOXYLASE COMPLEXED WITH PMP TITLE 2 AND CADAVERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ORNITHINE/D-LYSINE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ORN/D-LYS DECARBOXYLASE,DOKDC; COMPND 5 EC: 4.1.1.116; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: DOKD, STM2360; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PYRIDOXAL-5'-PHOSPHATE, FOLD III, COMPLEX, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.S.PHILLIPS,S.BLANKENSHIP REVDAT 1 19-AUG-26 9Y1P 0 JRNL AUTH R.S.PHILLIPS,S.BLANKENSHIP JRNL TITL C387S MUTANT OF D-ORNITHINE/D-LYSINE DECARBOXYLASE WITH JRNL TITL 2 BOUND PMP AND CADAVERINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5793 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 77834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.6300 - 4.3400 0.99 5838 158 0.1608 0.1970 REMARK 3 2 4.3400 - 3.4400 0.95 5462 146 0.1453 0.1894 REMARK 3 3 3.4400 - 3.0100 0.97 5561 149 0.1713 0.2128 REMARK 3 4 3.0100 - 2.7300 1.00 5678 144 0.2020 0.2466 REMARK 3 5 2.7300 - 2.5400 0.94 5355 148 0.2227 0.3113 REMARK 3 6 2.5400 - 2.3900 1.00 5667 141 0.2320 0.3015 REMARK 3 7 2.3900 - 2.2700 1.00 5638 150 0.2439 0.2883 REMARK 3 8 2.2700 - 2.1700 0.91 5176 141 0.2688 0.3123 REMARK 3 9 2.1700 - 2.0900 1.00 5611 154 0.2722 0.2926 REMARK 3 10 2.0900 - 2.0100 0.88 4972 125 0.3086 0.3918 REMARK 3 11 2.0100 - 1.9500 0.99 5624 150 0.3219 0.3157 REMARK 3 12 1.9500 - 1.8900 0.79 4459 120 0.3948 0.3952 REMARK 3 13 1.8900 - 1.8500 0.92 5180 131 0.3971 0.4001 REMARK 3 14 1.8500 - 1.8000 1.00 5601 155 0.4127 0.4472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.314 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8122 REMARK 3 ANGLE : 0.569 11050 REMARK 3 CHIRALITY : 0.045 1194 REMARK 3 PLANARITY : 0.005 1463 REMARK 3 DIHEDRAL : 12.811 3039 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9Y1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1000299675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61279 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 70.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-K, PH 8, 0.2 M SODIUM REMARK 280 ACETATE, 22% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.03500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.03500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 669 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 469 REMARK 465 ALA A 470 REMARK 465 LEU A 471 REMARK 465 GLU A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 ALA B 468 REMARK 465 ALA B 469 REMARK 465 ALA B 470 REMARK 465 LEU B 471 REMARK 465 GLU B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 465 HIS B 475 REMARK 465 HIS B 476 REMARK 465 HIS B 477 REMARK 465 HIS B 478 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 467 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 99.38 -69.89 REMARK 500 CYS A 82 118.42 -172.87 REMARK 500 CYS A 97 -166.68 -104.78 REMARK 500 ALA A 177 54.44 -96.56 REMARK 500 PRO A 224 31.25 -96.05 REMARK 500 CYS A 340 -179.84 -173.83 REMARK 500 ASP A 361 46.98 37.82 REMARK 500 ASN A 431 14.60 59.99 REMARK 500 CYS B 82 118.78 -171.09 REMARK 500 CYS B 97 -169.22 -106.36 REMARK 500 ASN B 143 95.78 -69.94 REMARK 500 PHE B 186 119.21 -161.27 REMARK 500 TRP B 298 -57.84 -133.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 508 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 204 O REMARK 620 2 LEU A 205 O 72.6 REMARK 620 3 MET A 207 O 85.1 91.1 REMARK 620 4 VAL A 210 O 83.3 155.8 89.3 REMARK 620 5 HOH A 937 O 97.2 102.0 166.8 78.1 REMARK 620 6 HOH A 970 O 141.6 118.5 128.2 79.3 45.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 506 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 204 O REMARK 620 2 LEU B 205 O 71.8 REMARK 620 3 MET B 207 O 89.2 95.7 REMARK 620 4 VAL B 210 O 81.8 153.6 83.5 REMARK 620 5 HOH B 955 O 89.5 95.5 167.8 84.3 REMARK 620 N 1 2 3 4 DBREF 9Y1P A 1 465 UNP Q8ZNC4 DOKDC_SALTY 1 465 DBREF 9Y1P B 1 465 UNP Q8ZNC4 DOKDC_SALTY 1 465 SEQADV 9Y1P SER A 387 UNP Q8ZNC4 CYS 387 ENGINEERED MUTATION SEQADV 9Y1P LEU A 466 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P LEU A 467 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P ALA A 468 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P ALA A 469 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P ALA A 470 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P LEU A 471 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P GLU A 472 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS A 473 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS A 474 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS A 475 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS A 476 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS A 477 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS A 478 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P SER B 387 UNP Q8ZNC4 CYS 387 ENGINEERED MUTATION SEQADV 9Y1P LEU B 466 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P LEU B 467 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P ALA B 468 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P ALA B 469 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P ALA B 470 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P LEU B 471 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P GLU B 472 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS B 473 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS B 474 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS B 475 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS B 476 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS B 477 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9Y1P HIS B 478 UNP Q8ZNC4 EXPRESSION TAG SEQRES 1 A 478 MET THR ASP SER ILE MET GLN ASN TYR ASN GLN LEU ARG SEQRES 2 A 478 GLU GLN VAL ILE ASN GLY ASP ARG ARG PHE GLN HIS LYS SEQRES 3 A 478 ASP GLY HIS LEU CYS PHE GLU GLY VAL ASP LEU ASP ALA SEQRES 4 A 478 LEU ALA ARG GLN TYR PRO THR PRO PHE TYR VAL PHE SER SEQRES 5 A 478 GLU PRO GLU ILE ILE ARG ASN ILE HIS GLU ILE GLN GLN SEQRES 6 A 478 ALA PHE ALA ALA HIS LYS ASN THR LYS THR PHE PHE ALA SEQRES 7 A 478 SER LYS THR CYS SER VAL MET GLY VAL LEU LYS ALA ILE SEQRES 8 A 478 ARG ASP ALA GLY ILE CYS ALA GLU ALA ASN SER GLN TYR SEQRES 9 A 478 GLU VAL ARG LYS CYS LEU GLU ILE GLY PHE ARG GLY ASP SEQRES 10 A 478 GLN ILE VAL PHE ASN GLY VAL VAL LYS LYS PRO ALA ASP SEQRES 11 A 478 LEU GLU TYR ALA ILE ALA ASN ASP LEU TYR LEU ILE ASN SEQRES 12 A 478 VAL ASP SER LEU TYR GLU LEU GLU HIS ILE ASP ALA ILE SEQRES 13 A 478 SER ARG LYS LEU LYS LYS VAL ALA ASN VAL CYS VAL ARG SEQRES 14 A 478 VAL GLU PRO ASN VAL PRO SER ALA THR HIS ALA GLU LEU SEQRES 15 A 478 VAL THR ALA PHE HIS ALA LYS SER GLY LEU ASP LEU GLU SEQRES 16 A 478 GLN ALA GLU GLU THR CYS ARG ARG ILE LEU ALA MET PRO SEQRES 17 A 478 TYR VAL HIS LEU ARG GLY LEU HIS MET HIS VAL GLY ASP SEQRES 18 A 478 GLN VAL PRO GLU SER GLU PRO PHE ALA LYS ALA THR LYS SEQRES 19 A 478 VAL LEU VAL ASP GLU SER ARG ARG LEU GLU GLU VAL LEU SEQRES 20 A 478 GLY ILE LYS PHE ASP LEU ILE ASN VAL GLY GLY GLY ILE SEQRES 21 A 478 PRO VAL PRO TYR LYS TYR ASP ASP GLU ASN GLY ASP PRO SEQRES 22 A 478 LEU LYS ASP ASN MET TYR ALA GLY ILE THR ALA GLN ASP SEQRES 23 A 478 PHE ALA ASP ALA VAL ILE ARG GLU VAL HIS LYS TRP ARG SEQRES 24 A 478 THR ASP VAL GLU ILE CYS ILE GLU PRO GLY ARG LYS VAL SEQRES 25 A 478 THR GLY SER ALA ALA VAL LEU LEU THR GLU VAL SER CYS SEQRES 26 A 478 GLU LYS ARG LYS THR ASN TYR ASP LEU ASN GLY ASN VAL SEQRES 27 A 478 GLU CYS HIS VAL GLU TRP LYS PHE VAL ASP ALA GLY TYR SEQRES 28 A 478 SER VAL LEU SER ASP SER GLN HIS PHE ASP TRP PHE PHE SEQRES 29 A 478 TYR VAL TYR ASN ALA SER ARG MET THR ALA ALA HIS ASP SEQRES 30 A 478 ALA TRP ILE LYS LEU ALA GLY PRO LEU SER ASP GLY GLY SEQRES 31 A 478 ASP TYR PHE HIS MET GLY VAL LYS GLY GLU GLU PHE LEU SEQRES 32 A 478 LEU PRO LYS GLU THR HIS VAL GLY ASP ILE VAL ALA PHE SEQRES 33 A 478 LEU ASP ALA GLY ALA TYR THR ILE GLU SER GLN THR VAL SEQRES 34 A 478 TYR ASN ASN ARG PRO ARG THR GLY VAL VAL MET ILE ASP SEQRES 35 A 478 LYS ASN GLY ASP THR ARG LEU ILE ARG ARG GLU ASP SER SEQRES 36 A 478 TYR GLU ASP MET VAL LYS TYR ASP ILE TYR LEU LEU ALA SEQRES 37 A 478 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 478 MET THR ASP SER ILE MET GLN ASN TYR ASN GLN LEU ARG SEQRES 2 B 478 GLU GLN VAL ILE ASN GLY ASP ARG ARG PHE GLN HIS LYS SEQRES 3 B 478 ASP GLY HIS LEU CYS PHE GLU GLY VAL ASP LEU ASP ALA SEQRES 4 B 478 LEU ALA ARG GLN TYR PRO THR PRO PHE TYR VAL PHE SER SEQRES 5 B 478 GLU PRO GLU ILE ILE ARG ASN ILE HIS GLU ILE GLN GLN SEQRES 6 B 478 ALA PHE ALA ALA HIS LYS ASN THR LYS THR PHE PHE ALA SEQRES 7 B 478 SER LYS THR CYS SER VAL MET GLY VAL LEU LYS ALA ILE SEQRES 8 B 478 ARG ASP ALA GLY ILE CYS ALA GLU ALA ASN SER GLN TYR SEQRES 9 B 478 GLU VAL ARG LYS CYS LEU GLU ILE GLY PHE ARG GLY ASP SEQRES 10 B 478 GLN ILE VAL PHE ASN GLY VAL VAL LYS LYS PRO ALA ASP SEQRES 11 B 478 LEU GLU TYR ALA ILE ALA ASN ASP LEU TYR LEU ILE ASN SEQRES 12 B 478 VAL ASP SER LEU TYR GLU LEU GLU HIS ILE ASP ALA ILE SEQRES 13 B 478 SER ARG LYS LEU LYS LYS VAL ALA ASN VAL CYS VAL ARG SEQRES 14 B 478 VAL GLU PRO ASN VAL PRO SER ALA THR HIS ALA GLU LEU SEQRES 15 B 478 VAL THR ALA PHE HIS ALA LYS SER GLY LEU ASP LEU GLU SEQRES 16 B 478 GLN ALA GLU GLU THR CYS ARG ARG ILE LEU ALA MET PRO SEQRES 17 B 478 TYR VAL HIS LEU ARG GLY LEU HIS MET HIS VAL GLY ASP SEQRES 18 B 478 GLN VAL PRO GLU SER GLU PRO PHE ALA LYS ALA THR LYS SEQRES 19 B 478 VAL LEU VAL ASP GLU SER ARG ARG LEU GLU GLU VAL LEU SEQRES 20 B 478 GLY ILE LYS PHE ASP LEU ILE ASN VAL GLY GLY GLY ILE SEQRES 21 B 478 PRO VAL PRO TYR LYS TYR ASP ASP GLU ASN GLY ASP PRO SEQRES 22 B 478 LEU LYS ASP ASN MET TYR ALA GLY ILE THR ALA GLN ASP SEQRES 23 B 478 PHE ALA ASP ALA VAL ILE ARG GLU VAL HIS LYS TRP ARG SEQRES 24 B 478 THR ASP VAL GLU ILE CYS ILE GLU PRO GLY ARG LYS VAL SEQRES 25 B 478 THR GLY SER ALA ALA VAL LEU LEU THR GLU VAL SER CYS SEQRES 26 B 478 GLU LYS ARG LYS THR ASN TYR ASP LEU ASN GLY ASN VAL SEQRES 27 B 478 GLU CYS HIS VAL GLU TRP LYS PHE VAL ASP ALA GLY TYR SEQRES 28 B 478 SER VAL LEU SER ASP SER GLN HIS PHE ASP TRP PHE PHE SEQRES 29 B 478 TYR VAL TYR ASN ALA SER ARG MET THR ALA ALA HIS ASP SEQRES 30 B 478 ALA TRP ILE LYS LEU ALA GLY PRO LEU SER ASP GLY GLY SEQRES 31 B 478 ASP TYR PHE HIS MET GLY VAL LYS GLY GLU GLU PHE LEU SEQRES 32 B 478 LEU PRO LYS GLU THR HIS VAL GLY ASP ILE VAL ALA PHE SEQRES 33 B 478 LEU ASP ALA GLY ALA TYR THR ILE GLU SER GLN THR VAL SEQRES 34 B 478 TYR ASN ASN ARG PRO ARG THR GLY VAL VAL MET ILE ASP SEQRES 35 B 478 LYS ASN GLY ASP THR ARG LEU ILE ARG ARG GLU ASP SER SEQRES 36 B 478 TYR GLU ASP MET VAL LYS TYR ASP ILE TYR LEU LEU ALA SEQRES 37 B 478 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET PMP A 501 27 HET DMS A 502 10 HET EDO A 503 10 HET DMS A 504 10 HET EDO A 505 10 HET N2P A 506 21 HET DMS A 507 20 HET K A 508 1 HET DMS B 501 10 HET PMP B 502 27 HET DMS B 503 10 HET EDO B 504 10 HET DMS B 505 10 HET K B 506 1 HET CL B 507 1 HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM N2P PENTANE-1,5-DIAMINE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PMP 2(C8 H13 N2 O5 P) FORMUL 4 DMS 6(C2 H6 O S) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 N2P C5 H14 N2 FORMUL 10 K 2(K 1+) FORMUL 17 CL CL 1- FORMUL 18 HOH *871(H2 O) HELIX 1 AA1 MET A 1 ASP A 20 1 20 HELIX 2 AA2 LEU A 37 TYR A 44 1 8 HELIX 3 AA3 GLU A 53 PHE A 67 1 15 HELIX 4 AA4 LYS A 80 CYS A 82 5 3 HELIX 5 AA5 VAL A 84 ALA A 94 1 11 HELIX 6 AA6 SER A 102 GLY A 113 1 12 HELIX 7 AA7 ARG A 115 ASP A 117 5 3 HELIX 8 AA8 LYS A 127 ASN A 137 1 11 HELIX 9 AA9 SER A 146 LYS A 161 1 16 HELIX 10 AB1 HIS A 179 VAL A 183 5 5 HELIX 11 AB2 GLN A 196 MET A 207 1 12 HELIX 12 AB3 SER A 226 GLY A 248 1 23 HELIX 13 AB4 ASP A 267 GLY A 271 5 5 HELIX 14 AB5 THR A 283 LYS A 297 1 15 HELIX 15 AB6 GLY A 309 GLY A 314 1 6 HELIX 16 AB7 LEU A 354 PHE A 360 1 7 HELIX 17 AB8 SER A 370 MET A 372 5 3 HELIX 18 AB9 VAL A 429 ARG A 433 5 5 HELIX 19 AC1 SER A 455 LYS A 461 1 7 HELIX 20 AC2 THR B 2 GLY B 19 1 18 HELIX 21 AC3 LEU B 37 TYR B 44 1 8 HELIX 22 AC4 GLU B 53 PHE B 67 1 15 HELIX 23 AC5 LYS B 80 CYS B 82 5 3 HELIX 24 AC6 VAL B 84 ALA B 94 1 11 HELIX 25 AC7 SER B 102 GLY B 113 1 12 HELIX 26 AC8 ARG B 115 ASP B 117 5 3 HELIX 27 AC9 LYS B 127 ASN B 137 1 11 HELIX 28 AD1 SER B 146 LYS B 161 1 16 HELIX 29 AD2 HIS B 179 VAL B 183 5 5 HELIX 30 AD3 GLN B 196 ALA B 206 1 11 HELIX 31 AD4 SER B 226 GLY B 248 1 23 HELIX 32 AD5 ASP B 267 GLY B 271 5 5 HELIX 33 AD6 THR B 283 HIS B 296 1 14 HELIX 34 AD7 GLY B 309 GLY B 314 1 6 HELIX 35 AD8 LEU B 354 PHE B 360 1 7 HELIX 36 AD9 SER B 370 MET B 372 5 3 HELIX 37 AE1 VAL B 429 ARG B 433 5 5 HELIX 38 AE2 SER B 455 LYS B 461 1 7 SHEET 1 AA1 3 PHE A 23 LYS A 26 0 SHEET 2 AA1 3 HIS A 29 PHE A 32 -1 O CYS A 31 N GLN A 24 SHEET 3 AA1 3 VAL A 35 ASP A 36 -1 O VAL A 35 N PHE A 32 SHEET 1 AA2 6 VAL A 366 ASN A 368 0 SHEET 2 AA2 6 ILE A 413 PHE A 416 -1 O ALA A 415 N TYR A 367 SHEET 3 AA2 6 ALA A 317 TYR A 332 -1 N THR A 321 O VAL A 414 SHEET 4 AA2 6 VAL A 338 VAL A 347 -1 O GLU A 339 N ASN A 331 SHEET 5 AA2 6 ALA A 378 ALA A 383 1 O ALA A 383 N VAL A 347 SHEET 6 AA2 6 PHE A 402 LEU A 404 -1 O PHE A 402 N ILE A 380 SHEET 1 AA3 6 VAL A 366 ASN A 368 0 SHEET 2 AA3 6 ILE A 413 PHE A 416 -1 O ALA A 415 N TYR A 367 SHEET 3 AA3 6 ALA A 317 TYR A 332 -1 N THR A 321 O VAL A 414 SHEET 4 AA3 6 PHE A 48 SER A 52 -1 N PHE A 48 O LEU A 320 SHEET 5 AA3 6 GLY A 437 ILE A 441 1 O VAL A 439 N PHE A 51 SHEET 6 AA3 6 THR A 447 ARG A 451 -1 O ILE A 450 N VAL A 438 SHEET 1 AA410 LEU A 192 ASP A 193 0 SHEET 2 AA410 ALA A 164 GLU A 171 1 N ARG A 169 O LEU A 192 SHEET 3 AA410 VAL A 210 HIS A 216 1 O HIS A 216 N VAL A 170 SHEET 4 AA410 LEU A 253 ASN A 255 1 O ASN A 255 N LEU A 215 SHEET 5 AA410 GLU A 303 ILE A 306 1 O CYS A 305 N ILE A 254 SHEET 6 AA410 THR A 73 ALA A 78 1 N PHE A 76 O ILE A 306 SHEET 7 AA410 CYS A 97 ALA A 100 1 O CYS A 97 N THR A 75 SHEET 8 AA410 ILE A 119 PHE A 121 1 O VAL A 120 N ALA A 100 SHEET 9 AA410 LEU A 141 VAL A 144 1 O LEU A 141 N PHE A 121 SHEET 10 AA410 ALA A 164 GLU A 171 1 O CYS A 167 N VAL A 144 SHEET 1 AA5 3 PHE B 23 LYS B 26 0 SHEET 2 AA5 3 HIS B 29 PHE B 32 -1 O CYS B 31 N GLN B 24 SHEET 3 AA5 3 VAL B 35 ASP B 36 -1 O VAL B 35 N PHE B 32 SHEET 1 AA6 6 VAL B 366 ASN B 368 0 SHEET 2 AA6 6 ILE B 413 PHE B 416 -1 O ALA B 415 N TYR B 367 SHEET 3 AA6 6 ALA B 317 TYR B 332 -1 N THR B 321 O VAL B 414 SHEET 4 AA6 6 VAL B 338 VAL B 347 -1 O PHE B 346 N SER B 324 SHEET 5 AA6 6 ALA B 378 ALA B 383 1 O ALA B 383 N LYS B 345 SHEET 6 AA6 6 PHE B 402 LEU B 404 -1 O PHE B 402 N ILE B 380 SHEET 1 AA7 6 VAL B 366 ASN B 368 0 SHEET 2 AA7 6 ILE B 413 PHE B 416 -1 O ALA B 415 N TYR B 367 SHEET 3 AA7 6 ALA B 317 TYR B 332 -1 N THR B 321 O VAL B 414 SHEET 4 AA7 6 PHE B 48 SER B 52 -1 N PHE B 48 O LEU B 320 SHEET 5 AA7 6 GLY B 437 ILE B 441 1 O VAL B 439 N TYR B 49 SHEET 6 AA7 6 THR B 447 ARG B 451 -1 O ARG B 448 N MET B 440 SHEET 1 AA810 LEU B 192 ASP B 193 0 SHEET 2 AA810 ALA B 164 GLU B 171 1 N GLU B 171 O LEU B 192 SHEET 3 AA810 VAL B 210 HIS B 216 1 O ARG B 213 N VAL B 166 SHEET 4 AA810 LEU B 253 ASN B 255 1 O ASN B 255 N LEU B 215 SHEET 5 AA810 GLU B 303 ILE B 306 1 O CYS B 305 N ILE B 254 SHEET 6 AA810 THR B 73 ALA B 78 1 N PHE B 76 O ILE B 306 SHEET 7 AA810 CYS B 97 ALA B 100 1 O CYS B 97 N THR B 75 SHEET 8 AA810 ILE B 119 PHE B 121 1 O VAL B 120 N ALA B 100 SHEET 9 AA810 LEU B 141 VAL B 144 1 O LEU B 141 N PHE B 121 SHEET 10 AA810 ALA B 164 GLU B 171 1 O CYS B 167 N VAL B 144 LINK O ILE A 204 K K A 508 1555 1555 2.72 LINK O LEU A 205 K K A 508 1555 1555 3.03 LINK O MET A 207 K K A 508 1555 1555 2.45 LINK O VAL A 210 K K A 508 1555 1555 2.60 LINK K K A 508 O AHOH A 937 1555 1555 3.24 LINK K K A 508 O BHOH A 970 1555 1555 3.38 LINK O ILE B 204 K K B 506 1555 1555 2.97 LINK O LEU B 205 K K B 506 1555 1555 3.16 LINK O MET B 207 K K B 506 1555 1555 2.62 LINK O VAL B 210 K K B 506 1555 1555 2.54 LINK K K B 506 O HOH B 955 1555 1555 2.85 CISPEP 1 THR A 46 PRO A 47 0 -1.75 CISPEP 2 THR B 46 PRO B 47 0 -4.03 CRYST1 142.070 49.500 139.770 90.00 115.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007039 0.000000 0.003378 0.00000 SCALE2 0.000000 0.020202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007936 0.00000 CONECT 340615672 CONECT 342515672 CONECT 345415672 CONECT 352215672 CONECT1126115740 CONECT1128015740 CONECT1130915740 CONECT1136115740 CONECT155641556515573 CONECT15565155641556615567 CONECT1556615565155801558115582 CONECT15567155651556815569 CONECT155681556715583 CONECT15569155671557015572 CONECT1557015569155711558415585 CONECT15571155701558615587 CONECT15572155691557315574 CONECT15573155641557215588 CONECT1557415572155751558915590 CONECT155751557415576 CONECT1557615575155771557815579 CONECT1557715576 CONECT1557815576 CONECT1557915576 CONECT1558015566 CONECT1558115566 CONECT1558215566 CONECT1558315568 CONECT1558415570 CONECT1558515570 CONECT1558615571 CONECT1558715571 CONECT1558815573 CONECT1558915574 CONECT1559015574 CONECT15591155921559315594 CONECT1559215591 CONECT1559315591155951559615597 CONECT1559415591155981559915600 CONECT1559515593 CONECT1559615593 CONECT1559715593 CONECT1559815594 CONECT1559915594 CONECT1560015594 CONECT1560115602156031560515606 CONECT156021560115607 CONECT1560315601156041560815609 CONECT156041560315610 CONECT1560515601 CONECT1560615601 CONECT1560715602 CONECT1560815603 CONECT1560915603 CONECT1561015604 CONECT15611156121561315614 CONECT1561215611 CONECT1561315611156151561615617 CONECT1561415611156181561915620 CONECT1561515613 CONECT1561615613 CONECT1561715613 CONECT1561815614 CONECT1561915614 CONECT1562015614 CONECT1562115622156231562515626 CONECT156221562115627 CONECT1562315621156241562815629 CONECT156241562315630 CONECT1562515621 CONECT1562615621 CONECT1562715622 CONECT1562815623 CONECT1562915623 CONECT1563015624 CONECT1563115632156351563815639 CONECT1563215631156331564015641 CONECT1563315632156341564215643 CONECT1563415633156361564415645 CONECT15635156311564615647 CONECT1563615634156371564815649 CONECT15637156361565015651 CONECT1563815631 CONECT1563915631 CONECT1564015632 CONECT1564115632 CONECT1564215633 CONECT1564315633 CONECT1564415634 CONECT1564515634 CONECT1564615635 CONECT1564715635 CONECT1564815636 CONECT1564915636 CONECT1565015637 CONECT1565115637 CONECT15652156541565615658 CONECT15653156551565715659 CONECT1565415652 CONECT1565515653 CONECT1565615652156601566215664 CONECT1565715653156611566315665 CONECT1565815652156661566815670 CONECT1565915653156671566915671 CONECT1566015656 CONECT1566115657 CONECT1566215656 CONECT1566315657 CONECT1566415656 CONECT1566515657 CONECT1566615658 CONECT1566715659 CONECT1566815658 CONECT1566915659 CONECT1567015658 CONECT1567115659 CONECT15672 3406 3425 3454 3522 CONECT156721607816111 CONECT15673156741567515676 CONECT1567415673 CONECT1567515673156771567815679 CONECT1567615673156801568115682 CONECT1567715675 CONECT1567815675 CONECT1567915675 CONECT1568015676 CONECT1568115676 CONECT1568215676 CONECT156831568415692 CONECT15684156831568515686 CONECT1568515684156991570015701 CONECT15686156841568715688 CONECT156871568615702 CONECT15688156861568915691 CONECT1568915688156901570315704 CONECT15690156891570515706 CONECT15691156881569215693 CONECT15692156831569115707 CONECT1569315691156941570815709 CONECT156941569315695 CONECT1569515694156961569715698 CONECT1569615695 CONECT1569715695 CONECT1569815695 CONECT1569915685 CONECT1570015685 CONECT1570115685 CONECT1570215687 CONECT1570315689 CONECT1570415689 CONECT1570515690 CONECT1570615690 CONECT1570715692 CONECT1570815693 CONECT1570915693 CONECT15710157111571215713 CONECT1571115710 CONECT1571215710157141571515716 CONECT1571315710157171571815719 CONECT1571415712 CONECT1571515712 CONECT1571615712 CONECT1571715713 CONECT1571815713 CONECT1571915713 CONECT1572015721157221572415725 CONECT157211572015726 CONECT1572215720157231572715728 CONECT157231572215729 CONECT1572415720 CONECT1572515720 CONECT1572615721 CONECT1572715722 CONECT1572815722 CONECT1572915723 CONECT15730157311573215733 CONECT1573115730 CONECT1573215730157341573515736 CONECT1573315730157371573815739 CONECT1573415732 CONECT1573515732 CONECT1573615732 CONECT1573715733 CONECT1573815733 CONECT1573915733 CONECT1574011261112801130911361 CONECT1574016542 CONECT1607815672 CONECT1611115672 CONECT1654215740 MASTER 304 0 15 38 50 0 0 6 8385 2 190 74 END