HEADER IMMUNE SYSTEM 02-SEP-25 9Y3I TITLE CRYSTAL STRUCTURE OF PA14 CIF BOUND TO NANOBODIES VHH108 AND VHH219 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY VHH219; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NANOBODY VHH108; COMPND 7 CHAIN: E, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CFTR INHIBITORY FACTOR; COMPND 11 CHAIN: A, B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 3 ORGANISM_TAXID: 30538; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PARS6; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 11 ORGANISM_TAXID: 30538; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PARS6; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PA14; SOURCE 19 ORGANISM_TAXID: 652611; SOURCE 20 GENE: PA14_26090; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 25 EXPRESSION_SYSTEM_PLASMID: PARS6 KEYWDS PSEUDOMONAS AERUGINOSA, NANOBODY VHH, IMMUNOGLOBULIN DOMAIN, CFTR KEYWDS 2 INHIBITORY FACTOR (CIF), IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.R.SIMARD,D.R.MADDEN REVDAT 1 09-SEP-26 9Y3I 0 JRNL AUTH A.R.SIMARD,D.R.MADDEN JRNL TITL ALLOSTERIC REGULATION OF AN EPOXIDE HYDROLASE BY A NANOBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.VASYLIEVA,S.KITAMURA,J.DONG,B.BARNYCH,K.L.HVORECNY, REMARK 1 AUTH 2 D.R.MADDEN,S.J.GEE,D.W.WOLAN,C.MORISSEAU,B.D.HAMMOCK REMARK 1 TITL NANOBODY-BASED BINDING ASSAY FOR THE DISCOVERY OF POTENT REMARK 1 TITL 2 INHIBITORS OF CFTR INHIBITORY FACTOR (CIF). REMARK 1 REF ANAL CHIM ACTA. 2019 REMARK 1 REFN REMARK 1 PMID 30832908 REMARK 1 DOI 10.1016/J.ACA.2018.12.060 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 139592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 7046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4600 - 4.8800 1.00 6961 367 0.1684 0.1971 REMARK 3 2 4.8800 - 3.8800 1.00 6738 370 0.1322 0.1358 REMARK 3 3 3.8800 - 3.3900 1.00 6691 376 0.1460 0.1570 REMARK 3 4 3.3900 - 3.0800 1.00 6670 344 0.1666 0.1788 REMARK 3 5 3.0800 - 2.8600 1.00 6666 339 0.1856 0.2007 REMARK 3 6 2.8600 - 2.6900 1.00 6616 354 0.1806 0.1967 REMARK 3 7 2.6900 - 2.5500 1.00 6606 356 0.1858 0.2142 REMARK 3 8 2.5500 - 2.4400 1.00 6627 367 0.1827 0.2143 REMARK 3 9 2.4400 - 2.3500 1.00 6610 338 0.1882 0.2087 REMARK 3 10 2.3500 - 2.2700 1.00 6633 327 0.1878 0.2098 REMARK 3 11 2.2700 - 2.2000 1.00 6586 352 0.1972 0.2139 REMARK 3 12 2.2000 - 2.1300 1.00 6580 363 0.1964 0.2118 REMARK 3 13 2.1300 - 2.0800 1.00 6592 361 0.2296 0.2561 REMARK 3 14 2.0800 - 2.0300 1.00 6552 350 0.2349 0.2463 REMARK 3 15 2.0300 - 1.9800 1.00 6574 345 0.2325 0.2511 REMARK 3 16 1.9800 - 1.9400 1.00 6624 349 0.2360 0.2725 REMARK 3 17 1.9400 - 1.9000 1.00 6535 356 0.2632 0.2828 REMARK 3 18 1.9000 - 1.8600 1.00 6541 343 0.2881 0.3168 REMARK 3 19 1.8600 - 1.8300 1.00 6554 351 0.3300 0.3334 REMARK 3 20 1.8300 - 1.8000 1.00 6590 338 0.4076 0.4561 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8616 REMARK 3 ANGLE : 0.928 11699 REMARK 3 CHIRALITY : 0.059 1245 REMARK 3 PLANARITY : 0.008 1543 REMARK 3 DIHEDRAL : 14.216 3128 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE APPROXIMATE PATH OF RESIDUES 41:47 OF CHAIN D IS SPARSELY REMARK 3 POPULATED BY POSITIVE ELECTRON-DENSITY PEAKS OBSERVED IN THE MFO- REMARK 3 DFC MAP VIEWED AT A 3-SIGMA CUTOFF, BUT THE PLACEMENT OF MAIN- REMARK 3 CHAIN ATOMS COULD NOT BE RESOLVED. REMARK 3 ATOMS MODELED WITH ZERO OCCUPANCY COULD NOT BE PLACED WITH REMARK 3 CONFIDENCE AND WERE SELECTED FOR ZERO-OCCUPANCY FLAGGING AFTER REMARK 3 MANUAL INSPECTION OF THE 2MFO-DFC MAP AT A 0.5-SIGMA CUTOFF. REMARK 4 REMARK 4 9Y3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1000299728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.69 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 139654 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10790 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24.2% (W/V) PEG3350, 1.72 M SODIUM REMARK 280 FORMATE, 100 MM CALCIUM CHLORIDE, 100 MM SODIUM ACETATE PH 4.69, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.07200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.07200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 75.39450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 118.97600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 75.39450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 118.97600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.07200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 75.39450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 118.97600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.07200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 75.39450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 118.97600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 228 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 329 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 337 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 GLY C 123 REMARK 465 GLN C 124 REMARK 465 ALA C 125 REMARK 465 GLY C 126 REMARK 465 GLN C 127 REMARK 465 MET D 1 REMARK 465 GLN D 41 REMARK 465 ALA D 42 REMARK 465 PRO D 43 REMARK 465 GLY D 44 REMARK 465 LYS D 45 REMARK 465 GLN D 46 REMARK 465 ARG D 47 REMARK 465 GLN D 117 REMARK 465 VAL D 118 REMARK 465 THR D 119 REMARK 465 VAL D 120 REMARK 465 SER D 121 REMARK 465 SER D 122 REMARK 465 GLY D 123 REMARK 465 GLN D 124 REMARK 465 ALA D 125 REMARK 465 GLY D 126 REMARK 465 GLN D 127 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 GLU E 3 REMARK 465 VAL E 4 REMARK 465 SER E 126 REMARK 465 SER E 127 REMARK 465 GLY E 128 REMARK 465 GLN E 129 REMARK 465 ALA E 130 REMARK 465 GLY E 131 REMARK 465 GLN E 132 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 GLU F 3 REMARK 465 VAL F 4 REMARK 465 GLY F 128 REMARK 465 GLN F 129 REMARK 465 ALA F 130 REMARK 465 GLY F 131 REMARK 465 GLN F 132 REMARK 465 GLY A 318 REMARK 465 ARG A 319 REMARK 465 ALA B 25 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU D 13 CG CD1 CD2 REMARK 480 GLN D 15 CG CD OE1 NE2 REMARK 480 SER D 64 OG REMARK 480 LYS D 66 CG CD CE NZ REMARK 480 LEU D 87 CG CD1 CD2 REMARK 480 GLU D 90 CD OE1 OE2 REMARK 480 GLN E 15 CG CD OE1 NE2 REMARK 480 LYS E 44 CD CE NZ REMARK 480 GLU E 47 CG CD OE1 OE2 REMARK 480 GLU E 62 CD OE1 OE2 REMARK 480 ILE E 74 CD1 REMARK 480 LYS E 87 CG CD CE NZ REMARK 480 LYS F 44 CE NZ REMARK 480 LYS A 98 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 64 -2.76 75.79 REMARK 500 ALA C 93 164.80 179.92 REMARK 500 ALA D 93 171.14 176.99 REMARK 500 ASN E 29 -101.41 59.04 REMARK 500 THR E 104 -98.42 -127.32 REMARK 500 THR F 104 -99.10 -125.14 REMARK 500 ASP A 129 -133.67 61.32 REMARK 500 ALA A 154 143.75 -176.24 REMARK 500 ASP B 129 -133.45 60.23 REMARK 500 ALA B 154 148.85 179.37 REMARK 500 LEU B 174 -56.14 71.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 9Y3I C 1 127 PDB 9Y3I 9Y3I 1 127 DBREF 9Y3I D 1 127 PDB 9Y3I 9Y3I 1 127 DBREF 9Y3I E 1 132 PDB 9Y3I 9Y3I 1 132 DBREF 9Y3I F 1 132 PDB 9Y3I 9Y3I 1 132 DBREF1 9Y3I A 25 319 UNP A0A0M3KL26_PSEAB DBREF2 9Y3I A A0A0M3KL26 1 295 DBREF1 9Y3I B 25 319 UNP A0A0M3KL26_PSEAB DBREF2 9Y3I B A0A0M3KL26 1 295 SEQRES 1 C 127 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 C 127 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS THR THR SEQRES 3 C 127 SER THR SER LEU PHE SER ILE THR THR MET GLY TRP TYR SEQRES 4 C 127 ARG GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA SER SEQRES 5 C 127 ILE LYS ARG GLY GLY GLY THR ASN TYR ALA ASP SER MET SEQRES 6 C 127 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN SEQRES 7 C 127 THR VAL PHE LEU GLU MET ASN ASN LEU THR THR GLU ASP SEQRES 8 C 127 THR ALA VAL TYR TYR CYS ASN ALA ALA ILE LEU ALA TYR SEQRES 9 C 127 THR GLY GLU VAL THR ASN TYR TRP GLY GLN GLY THR GLN SEQRES 10 C 127 VAL THR VAL SER SER GLY GLN ALA GLY GLN SEQRES 1 D 127 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 D 127 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS THR THR SEQRES 3 D 127 SER THR SER LEU PHE SER ILE THR THR MET GLY TRP TYR SEQRES 4 D 127 ARG GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA SER SEQRES 5 D 127 ILE LYS ARG GLY GLY GLY THR ASN TYR ALA ASP SER MET SEQRES 6 D 127 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN SEQRES 7 D 127 THR VAL PHE LEU GLU MET ASN ASN LEU THR THR GLU ASP SEQRES 8 D 127 THR ALA VAL TYR TYR CYS ASN ALA ALA ILE LEU ALA TYR SEQRES 9 D 127 THR GLY GLU VAL THR ASN TYR TRP GLY GLN GLY THR GLN SEQRES 10 D 127 VAL THR VAL SER SER GLY GLN ALA GLY GLN SEQRES 1 E 132 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 E 132 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SEQRES 3 E 132 THR GLY ASN PHE ASP ASP ARG GLY ILE GLY TRP PHE ARG SEQRES 4 E 132 GLN ALA PRO GLY LYS GLU ARG GLU GLY ILE ALA CYS ILE SEQRES 5 E 132 THR THR ARG GLY ARG THR HIS TYR ALA GLU SER VAL GLU SEQRES 6 E 132 GLY ARG PHE THR ILE SER THR ASP ILE ALA ASN ASN ALA SEQRES 7 E 132 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 E 132 ALA VAL TYR TYR CYS ALA LYS ALA ILE ARG LEU THR THR SEQRES 9 E 132 ASP ARG THR GLN CYS VAL ALA PHE PRO GLY VAL SER TRP SEQRES 10 E 132 GLY ARG GLY THR GLN VAL THR VAL SER SER GLY GLN ALA SEQRES 11 E 132 GLY GLN SEQRES 1 F 132 MET ALA GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 F 132 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SEQRES 3 F 132 THR GLY ASN PHE ASP ASP ARG GLY ILE GLY TRP PHE ARG SEQRES 4 F 132 GLN ALA PRO GLY LYS GLU ARG GLU GLY ILE ALA CYS ILE SEQRES 5 F 132 THR THR ARG GLY ARG THR HIS TYR ALA GLU SER VAL GLU SEQRES 6 F 132 GLY ARG PHE THR ILE SER THR ASP ILE ALA ASN ASN ALA SEQRES 7 F 132 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 F 132 ALA VAL TYR TYR CYS ALA LYS ALA ILE ARG LEU THR THR SEQRES 9 F 132 ASP ARG THR GLN CYS VAL ALA PHE PRO GLY VAL SER TRP SEQRES 10 F 132 GLY ARG GLY THR GLN VAL THR VAL SER SER GLY GLN ALA SEQRES 11 F 132 GLY GLN SEQRES 1 A 295 ALA GLU GLU PHE PRO VAL PRO ASN GLY PHE GLU SER ALA SEQRES 2 A 295 TYR ARG GLU VAL ASP GLY VAL LYS LEU HIS TYR VAL LYS SEQRES 3 A 295 GLY GLY GLN GLY PRO LEU VAL MET LEU VAL HIS GLY PHE SEQRES 4 A 295 GLY GLN THR TRP TYR GLU TRP HIS GLN LEU MET PRO GLU SEQRES 5 A 295 LEU ALA LYS ARG PHE THR VAL ILE ALA PRO ASP LEU PRO SEQRES 6 A 295 GLY LEU GLY GLN SER GLU PRO PRO LYS THR GLY TYR SER SEQRES 7 A 295 GLY GLU GLN VAL ALA VAL TYR LEU HIS LYS LEU ALA ARG SEQRES 8 A 295 GLN PHE SER PRO ASP ARG PRO PHE ASP LEU VAL ALA HIS SEQRES 9 A 295 ASP ILE GLY ILE TRP ASN THR TYR PRO MET VAL VAL LYS SEQRES 10 A 295 ASN GLN ALA ASP ILE ALA ARG LEU VAL TYR MET GLU ALA SEQRES 11 A 295 PRO ILE PRO ASP ALA ARG ILE TYR ARG PHE PRO ALA PHE SEQRES 12 A 295 THR ALA GLN GLY GLU SER LEU VAL TRP HIS PHE SER PHE SEQRES 13 A 295 PHE ALA ALA ASP ASP ARG LEU ALA GLU THR LEU ILE ALA SEQRES 14 A 295 GLY LYS GLU ARG PHE PHE LEU GLU HIS PHE ILE LYS SER SEQRES 15 A 295 HIS ALA SER ASN THR GLU VAL PHE SER GLU ARG LEU LEU SEQRES 16 A 295 ASP LEU TYR ALA ARG SER TYR ALA LYS PRO HIS SER LEU SEQRES 17 A 295 ASN ALA SER PHE GLU TYR TYR ARG ALA LEU ASN GLU SER SEQRES 18 A 295 VAL ARG GLN ASN ALA GLU LEU ALA LYS THR ARG LEU GLN SEQRES 19 A 295 MET PRO THR MET THR LEU ALA GLY GLY GLY HIS GLY GLY SEQRES 20 A 295 MET GLY THR PHE GLN LEU GLU GLN MET LYS ALA TYR ALA SEQRES 21 A 295 GLU ASP VAL GLU GLY HIS VAL LEU PRO GLY CYS GLY HIS SEQRES 22 A 295 TRP LEU PRO GLU GLU CYS ALA ALA PRO MET ASN ARG LEU SEQRES 23 A 295 VAL ILE ASP PHE LEU SER ARG GLY ARG SEQRES 1 B 295 ALA GLU GLU PHE PRO VAL PRO ASN GLY PHE GLU SER ALA SEQRES 2 B 295 TYR ARG GLU VAL ASP GLY VAL LYS LEU HIS TYR VAL LYS SEQRES 3 B 295 GLY GLY GLN GLY PRO LEU VAL MET LEU VAL HIS GLY PHE SEQRES 4 B 295 GLY GLN THR TRP TYR GLU TRP HIS GLN LEU MET PRO GLU SEQRES 5 B 295 LEU ALA LYS ARG PHE THR VAL ILE ALA PRO ASP LEU PRO SEQRES 6 B 295 GLY LEU GLY GLN SER GLU PRO PRO LYS THR GLY TYR SER SEQRES 7 B 295 GLY GLU GLN VAL ALA VAL TYR LEU HIS LYS LEU ALA ARG SEQRES 8 B 295 GLN PHE SER PRO ASP ARG PRO PHE ASP LEU VAL ALA HIS SEQRES 9 B 295 ASP ILE GLY ILE TRP ASN THR TYR PRO MET VAL VAL LYS SEQRES 10 B 295 ASN GLN ALA ASP ILE ALA ARG LEU VAL TYR MET GLU ALA SEQRES 11 B 295 PRO ILE PRO ASP ALA ARG ILE TYR ARG PHE PRO ALA PHE SEQRES 12 B 295 THR ALA GLN GLY GLU SER LEU VAL TRP HIS PHE SER PHE SEQRES 13 B 295 PHE ALA ALA ASP ASP ARG LEU ALA GLU THR LEU ILE ALA SEQRES 14 B 295 GLY LYS GLU ARG PHE PHE LEU GLU HIS PHE ILE LYS SER SEQRES 15 B 295 HIS ALA SER ASN THR GLU VAL PHE SER GLU ARG LEU LEU SEQRES 16 B 295 ASP LEU TYR ALA ARG SER TYR ALA LYS PRO HIS SER LEU SEQRES 17 B 295 ASN ALA SER PHE GLU TYR TYR ARG ALA LEU ASN GLU SER SEQRES 18 B 295 VAL ARG GLN ASN ALA GLU LEU ALA LYS THR ARG LEU GLN SEQRES 19 B 295 MET PRO THR MET THR LEU ALA GLY GLY GLY HIS GLY GLY SEQRES 20 B 295 MET GLY THR PHE GLN LEU GLU GLN MET LYS ALA TYR ALA SEQRES 21 B 295 GLU ASP VAL GLU GLY HIS VAL LEU PRO GLY CYS GLY HIS SEQRES 22 B 295 TRP LEU PRO GLU GLU CYS ALA ALA PRO MET ASN ARG LEU SEQRES 23 B 295 VAL ILE ASP PHE LEU SER ARG GLY ARG HET FMT A 401 3 HET FMT A 402 3 HET FMT B 401 3 HETNAM FMT FORMIC ACID FORMUL 7 FMT 3(C H2 O2) FORMUL 10 HOH *957(H2 O) HELIX 1 AA1 SER C 29 ILE C 33 5 5 HELIX 2 AA2 THR C 88 THR C 92 5 5 HELIX 3 AA3 SER D 29 ILE D 33 5 5 HELIX 4 AA4 ASN D 75 ARG D 77 5 3 HELIX 5 AA5 GLU E 62 GLU E 65 5 4 HELIX 6 AA6 LYS E 87 THR E 91 5 5 HELIX 7 AA7 LYS F 87 THR F 91 5 5 HELIX 8 AA8 THR A 66 HIS A 71 5 6 HELIX 9 AA9 GLN A 72 ALA A 78 1 7 HELIX 10 AB1 SER A 102 SER A 118 1 17 HELIX 11 AB2 ASP A 129 ASN A 134 1 6 HELIX 12 AB3 THR A 135 ASN A 142 1 8 HELIX 13 AB4 ASP A 158 PHE A 164 5 7 HELIX 14 AB5 TRP A 176 ALA A 183 1 8 HELIX 15 AB6 ARG A 186 ALA A 193 1 8 HELIX 16 AB7 LYS A 195 HIS A 207 1 13 HELIX 17 AB8 SER A 215 ALA A 227 1 13 HELIX 18 AB9 LYS A 228 ALA A 241 1 14 HELIX 19 AC1 ALA A 241 ALA A 253 1 13 HELIX 20 AC2 THR A 274 LYS A 281 1 8 HELIX 21 AC3 TRP A 298 CYS A 303 1 6 HELIX 22 AC4 CYS A 303 ARG A 317 1 15 HELIX 23 AC5 THR B 66 HIS B 71 5 6 HELIX 24 AC6 GLN B 72 ALA B 78 1 7 HELIX 25 AC7 SER B 102 SER B 118 1 17 HELIX 26 AC8 ASP B 129 ASN B 134 1 6 HELIX 27 AC9 THR B 135 ASN B 142 1 8 HELIX 28 AD1 ASP B 158 PHE B 164 5 7 HELIX 29 AD2 TRP B 176 ALA B 183 1 8 HELIX 30 AD3 ARG B 186 ALA B 193 1 8 HELIX 31 AD4 LYS B 195 HIS B 207 1 13 HELIX 32 AD5 ASN B 210 PHE B 214 5 5 HELIX 33 AD6 SER B 215 LYS B 228 1 14 HELIX 34 AD7 LYS B 228 ALA B 241 1 14 HELIX 35 AD8 ALA B 241 ALA B 253 1 13 HELIX 36 AD9 THR B 274 LYS B 281 1 8 HELIX 37 AE1 TRP B 298 CYS B 303 1 6 HELIX 38 AE2 CYS B 303 ARG B 317 1 15 SHEET 1 AA1 4 LEU C 6 SER C 9 0 SHEET 2 AA1 4 LEU C 20 THR C 26 -1 O SER C 23 N SER C 9 SHEET 3 AA1 4 THR C 79 MET C 84 -1 O MET C 84 N LEU C 20 SHEET 4 AA1 4 PHE C 69 ASP C 74 -1 N THR C 70 O GLU C 83 SHEET 1 AA2 6 GLY C 12 VAL C 14 0 SHEET 2 AA2 6 THR C 116 VAL C 120 1 O THR C 119 N GLY C 12 SHEET 3 AA2 6 ALA C 93 LEU C 102 -1 N TYR C 95 O THR C 116 SHEET 4 AA2 6 THR C 35 GLN C 41 -1 N TYR C 39 O TYR C 96 SHEET 5 AA2 6 GLU C 48 LYS C 54 -1 O ALA C 51 N TRP C 38 SHEET 6 AA2 6 THR C 59 TYR C 61 -1 O ASN C 60 N SER C 52 SHEET 1 AA3 4 GLY C 12 VAL C 14 0 SHEET 2 AA3 4 THR C 116 VAL C 120 1 O THR C 119 N GLY C 12 SHEET 3 AA3 4 ALA C 93 LEU C 102 -1 N TYR C 95 O THR C 116 SHEET 4 AA3 4 VAL C 108 TRP C 112 -1 O THR C 109 N ILE C 101 SHEET 1 AA4 4 LEU D 6 SER D 9 0 SHEET 2 AA4 4 LEU D 20 THR D 26 -1 O THR D 25 N VAL D 7 SHEET 3 AA4 4 THR D 79 MET D 84 -1 O MET D 84 N LEU D 20 SHEET 4 AA4 4 PHE D 69 ASP D 74 -1 N THR D 70 O GLU D 83 SHEET 1 AA5 5 THR D 59 TYR D 61 0 SHEET 2 AA5 5 ALA D 51 LYS D 54 -1 N SER D 52 O ASN D 60 SHEET 3 AA5 5 THR D 35 TYR D 39 -1 N TRP D 38 O ALA D 51 SHEET 4 AA5 5 TYR D 96 LEU D 102 -1 O TYR D 96 N TYR D 39 SHEET 5 AA5 5 VAL D 108 TRP D 112 -1 O THR D 109 N ILE D 101 SHEET 1 AA6 4 LEU E 6 SER E 9 0 SHEET 2 AA6 4 LEU E 20 ALA E 26 -1 O SER E 23 N SER E 9 SHEET 3 AA6 4 ALA E 78 MET E 83 -1 O MET E 83 N LEU E 20 SHEET 4 AA6 4 PHE E 68 ASP E 73 -1 N ASP E 73 O ALA E 78 SHEET 1 AA7 4 GLY E 12 LEU E 13 0 SHEET 2 AA7 4 THR E 121 THR E 124 1 O THR E 124 N GLY E 12 SHEET 3 AA7 4 ALA E 92 THR E 103 -1 N TYR E 94 O THR E 121 SHEET 4 AA7 4 THR E 107 ALA E 111 -1 O VAL E 110 N ILE E 100 SHEET 1 AA812 THR E 58 TYR E 60 0 SHEET 2 AA812 GLU E 47 ILE E 52 -1 N CYS E 51 O HIS E 59 SHEET 3 AA812 ILE E 35 GLN E 40 -1 N TRP E 37 O ALA E 50 SHEET 4 AA812 ALA E 92 THR E 103 -1 O TYR E 95 N PHE E 38 SHEET 5 AA812 ASP A 286 LEU A 292 1 O VAL A 287 N THR E 103 SHEET 6 AA812 THR A 261 GLY A 266 1 N ALA A 265 O LEU A 292 SHEET 7 AA812 ILE A 146 MET A 152 1 N TYR A 151 O MET A 262 SHEET 8 AA812 PHE A 123 HIS A 128 1 N PHE A 123 O ALA A 147 SHEET 9 AA812 LEU A 56 VAL A 60 1 N LEU A 56 O ASP A 124 SHEET 10 AA812 THR A 82 PRO A 86 1 O THR A 82 N VAL A 57 SHEET 11 AA812 VAL A 44 GLY A 52 -1 N GLY A 51 O VAL A 83 SHEET 12 AA812 PHE A 34 VAL A 41 -1 N VAL A 41 O VAL A 44 SHEET 1 AA9 4 LEU F 6 SER F 9 0 SHEET 2 AA9 4 LEU F 20 ALA F 26 -1 O SER F 23 N SER F 9 SHEET 3 AA9 4 ALA F 78 MET F 83 -1 O MET F 83 N LEU F 20 SHEET 4 AA9 4 PHE F 68 ASP F 73 -1 N ASP F 73 O ALA F 78 SHEET 1 AB1 4 GLY F 12 VAL F 14 0 SHEET 2 AB1 4 THR F 121 VAL F 125 1 O THR F 124 N GLY F 12 SHEET 3 AB1 4 ALA F 92 THR F 103 -1 N TYR F 94 O THR F 121 SHEET 4 AB1 4 THR F 107 ALA F 111 -1 O GLN F 108 N LEU F 102 SHEET 1 AB212 THR F 58 TYR F 60 0 SHEET 2 AB212 GLU F 47 ILE F 52 -1 N CYS F 51 O HIS F 59 SHEET 3 AB212 ILE F 35 GLN F 40 -1 N TRP F 37 O ALA F 50 SHEET 4 AB212 ALA F 92 THR F 103 -1 O TYR F 95 N PHE F 38 SHEET 5 AB212 ASP B 286 LEU B 292 1 O VAL B 287 N THR F 103 SHEET 6 AB212 THR B 261 GLY B 266 1 N ALA B 265 O LEU B 292 SHEET 7 AB212 ILE B 146 MET B 152 1 N TYR B 151 O MET B 262 SHEET 8 AB212 PHE B 123 HIS B 128 1 N LEU B 125 O VAL B 150 SHEET 9 AB212 LEU B 56 VAL B 60 1 N LEU B 56 O ASP B 124 SHEET 10 AB212 THR B 82 PRO B 86 1 O ILE B 84 N LEU B 59 SHEET 11 AB212 VAL B 44 GLY B 52 -1 N GLY B 51 O VAL B 83 SHEET 12 AB212 GLU B 35 VAL B 41 -1 N ARG B 39 O LEU B 46 SHEET 1 AB3 2 PHE A 167 THR A 168 0 SHEET 2 AB3 2 GLY A 171 GLU A 172 -1 O GLY A 171 N THR A 168 SHEET 1 AB4 2 PHE B 167 THR B 168 0 SHEET 2 AB4 2 GLY B 171 GLU B 172 -1 O GLY B 171 N THR B 168 SSBOND 1 CYS E 24 CYS E 96 1555 1555 2.04 SSBOND 2 CYS E 51 CYS E 109 1555 1555 2.05 SSBOND 3 CYS F 24 CYS F 96 1555 1555 2.06 SSBOND 4 CYS F 51 CYS F 109 1555 1555 2.08 SSBOND 5 CYS A 295 CYS A 303 1555 1555 2.03 SSBOND 6 CYS B 295 CYS B 303 1555 1555 2.03 CRYST1 150.789 237.952 84.144 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006632 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011884 0.00000 CONECT 1884 2450 CONECT 2093 2560 CONECT 2450 1884 CONECT 2560 2093 CONECT 2836 3411 CONECT 3045 3512 CONECT 3411 2836 CONECT 3512 3045 CONECT 5828 5904 CONECT 5904 5828 CONECT 8205 8272 CONECT 8272 8205 CONECT 8401 8402 8403 CONECT 8402 8401 CONECT 8403 8401 CONECT 8404 8405 8406 CONECT 8405 8404 CONECT 8406 8404 CONECT 8407 8408 8409 CONECT 8408 8407 CONECT 8409 8407 MASTER 358 0 3 38 67 0 0 6 9221 6 21 88 END