data_9Y61 # _entry.id 9Y61 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9Y61 pdb_00009y61 10.2210/pdb9y61/pdb WWPDB D_1000299864 ? ? EMDB EMD-72526 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-15 ? 2 'EM metadata' 1 0 2026-07-15 ? 3 FSC 1 0 2026-07-15 ? 4 'Half map' 1 0 2026-07-15 1 5 'Half map' 1 0 2026-07-15 2 6 Image 1 0 2026-07-15 ? 7 Mask 1 0 2026-07-15 1 8 'Primary map' 1 0 2026-07-15 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9Y61 _pdbx_database_status.recvd_initial_deposition_date 2025-09-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader' _pdbx_database_related.db_id EMD-72526 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email jinyi.zhu@bms.com _pdbx_contact_author.name_first JINYI _pdbx_contact_author.name_last ZHU _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5436-4262 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhu, J.' 1 0000-0001-5436-4262 'Pagarigan, B.E.' 2 ? 'Fang, W.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Blood _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1528-0020 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'NSD2 Degradation Remediates the Oncogenic Cistrome in t(4;14) Multiple Myeloma.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1182/blood.2025031998 _citation.pdbx_database_id_PubMed 42371798 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hu, B.' 1 0000-0001-8527-3750 primary 'Edwards, J.' 2 ? primary 'Modi, H.' 3 ? primary 'Gamez, J.' 4 ? primary 'Echeagaray, O.E.' 5 ? primary 'Hess, K.' 6 0000-0003-2096-0626 primary 'Ren, Y.' 7 0000-0003-4281-358X primary 'Anderson, D.' 8 ? primary 'Larrayoz, M.' 9 ? primary 'Zhu, J.' 10 0000-0001-5436-4262 primary 'Johnson, S.A.' 11 0000-0002-0244-5201 primary 'Deb, G.' 12 ? primary 'Jankeel, D.' 13 0009-0005-8998-3078 primary 'Janardhanan, P.' 14 0000-0003-3719-7938 primary 'Leisten, J.' 15 ? primary 'Peng, S.' 16 0009-0004-9268-8195 primary 'Christoforou, A.' 17 0000-0002-3933-1793 primary 'Stong, N.' 18 0000-0002-0678-637X primary 'Fontanillo, C.' 19 ? primary 'Bjorklund, C.C.' 20 0000-0002-5965-3263 primary 'Hagner, P.R.' 21 ? primary 'Gandhi, A.K.' 22 0000-0001-5512-1625 primary 'Martinez-Climent, J.A.' 23 ? primary 'Narla, R.K.' 24 0000-0001-5181-3376 primary 'Lopez-Girona, A.' 25 ? primary 'Rolfe, M.' 26 ? primary 'Bence, N.' 27 0000-0002-6723-2880 primary 'Mortensen, D.S.' 28 0000-0002-9144-0962 primary 'Groocock, L.' 29 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase NSD2' 19818.707 1 2.1.1.357 ? 'UNP residues 202-368' ? 2 polymer man 'Protein cereblon' 53581.984 1 ? ? ? ? 3 non-polymer syn ;1-(5-{9-[(4-{2-[(2S,3R)-2-(3,5-dichloro-4-fluorophenyl)-5-oxomorpholin-3-yl]ethyl}piperazin-1-yl)methyl]-3-azaspiro[5.5]undecane-3-carbonyl}-2-methylphenyl)-1,3-diazinane-2,4-dione ; 771.748 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Multiple myeloma SET domain-containing protein,MMSET,Nuclear SET domain-containing protein 2,Protein trithorax-5,Wolf-Hirschhorn syndrome candidate 1 protein ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKS LVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA KEAGIAAEHHHHHH ; ;MAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKS LVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA KEAGIAAEHHHHHH ; A ? 2 'polypeptide(L)' no no ;MSYYHHHHHHDYDIPTTGLVPRGSMMAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPT SHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQF GTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSR EDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLR IQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPS TEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDKVILCL ; ;MSYYHHHHHHDYDIPTTGLVPRGSMMAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPT SHTYLGADMEEFHGRTLHDDDSCQVIPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQF GTTAEIYAYREEQDFGIEIVKVKAIGRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSR EDQCSYKWWQKYQKRKFHCANLTSWPRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLR IQLLKIGSAIQRLRCELDIMNKCTSLCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPS TEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDKVILCL ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;1-(5-{9-[(4-{2-[(2S,3R)-2-(3,5-dichloro-4-fluorophenyl)-5-oxomorpholin-3-yl]ethyl}piperazin-1-yl)methyl]-3-azaspiro[5.5]undecane-3-carbonyl}-2-methylphenyl)-1,3-diazinane-2,4-dione ; A1CSQ 4 'ZINC ION' ZN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 LYS n 1 5 GLU n 1 6 SER n 1 7 CYS n 1 8 PRO n 1 9 ASN n 1 10 THR n 1 11 GLY n 1 12 ARG n 1 13 ASP n 1 14 LYS n 1 15 ASP n 1 16 HIS n 1 17 LEU n 1 18 LEU n 1 19 LYS n 1 20 TYR n 1 21 ASN n 1 22 VAL n 1 23 GLY n 1 24 ASP n 1 25 LEU n 1 26 VAL n 1 27 TRP n 1 28 SER n 1 29 LYS n 1 30 VAL n 1 31 SER n 1 32 GLY n 1 33 TYR n 1 34 PRO n 1 35 TRP n 1 36 TRP n 1 37 PRO n 1 38 CYS n 1 39 MET n 1 40 VAL n 1 41 SER n 1 42 ALA n 1 43 ASP n 1 44 PRO n 1 45 LEU n 1 46 LEU n 1 47 HIS n 1 48 SER n 1 49 TYR n 1 50 THR n 1 51 LYS n 1 52 LEU n 1 53 LYS n 1 54 GLY n 1 55 GLN n 1 56 LYS n 1 57 LYS n 1 58 SER n 1 59 ALA n 1 60 ARG n 1 61 GLN n 1 62 TYR n 1 63 HIS n 1 64 VAL n 1 65 GLN n 1 66 PHE n 1 67 PHE n 1 68 GLY n 1 69 ASP n 1 70 ALA n 1 71 PRO n 1 72 GLU n 1 73 ARG n 1 74 ALA n 1 75 TRP n 1 76 ILE n 1 77 PHE n 1 78 GLU n 1 79 LYS n 1 80 SER n 1 81 LEU n 1 82 VAL n 1 83 ALA n 1 84 PHE n 1 85 GLU n 1 86 GLY n 1 87 GLU n 1 88 GLY n 1 89 GLN n 1 90 PHE n 1 91 GLU n 1 92 LYS n 1 93 LEU n 1 94 CYS n 1 95 GLN n 1 96 GLU n 1 97 SER n 1 98 ALA n 1 99 LYS n 1 100 GLN n 1 101 ALA n 1 102 PRO n 1 103 THR n 1 104 LYS n 1 105 ALA n 1 106 GLU n 1 107 LYS n 1 108 ILE n 1 109 LYS n 1 110 LEU n 1 111 LEU n 1 112 LYS n 1 113 PRO n 1 114 ILE n 1 115 SER n 1 116 GLY n 1 117 LYS n 1 118 LEU n 1 119 ARG n 1 120 ALA n 1 121 GLN n 1 122 TRP n 1 123 GLU n 1 124 MET n 1 125 GLY n 1 126 ILE n 1 127 VAL n 1 128 GLN n 1 129 ALA n 1 130 GLU n 1 131 GLU n 1 132 ALA n 1 133 ALA n 1 134 SER n 1 135 MET n 1 136 SER n 1 137 VAL n 1 138 GLU n 1 139 GLU n 1 140 ARG n 1 141 LYS n 1 142 ALA n 1 143 LYS n 1 144 PHE n 1 145 THR n 1 146 PHE n 1 147 LEU n 1 148 TYR n 1 149 VAL n 1 150 GLY n 1 151 ASP n 1 152 GLN n 1 153 LEU n 1 154 HIS n 1 155 LEU n 1 156 ASN n 1 157 PRO n 1 158 GLN n 1 159 VAL n 1 160 ALA n 1 161 LYS n 1 162 GLU n 1 163 ALA n 1 164 GLY n 1 165 ILE n 1 166 ALA n 1 167 ALA n 1 168 GLU n 1 169 HIS n 1 170 HIS n 1 171 HIS n 1 172 HIS n 1 173 HIS n 1 174 HIS n 2 1 MET n 2 2 SER n 2 3 TYR n 2 4 TYR n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 HIS n 2 11 ASP n 2 12 TYR n 2 13 ASP n 2 14 ILE n 2 15 PRO n 2 16 THR n 2 17 THR n 2 18 GLY n 2 19 LEU n 2 20 VAL n 2 21 PRO n 2 22 ARG n 2 23 GLY n 2 24 SER n 2 25 MET n 2 26 MET n 2 27 ALA n 2 28 GLY n 2 29 GLU n 2 30 GLY n 2 31 ASP n 2 32 GLN n 2 33 GLN n 2 34 ASP n 2 35 ALA n 2 36 ALA n 2 37 HIS n 2 38 ASN n 2 39 MET n 2 40 GLY n 2 41 ASN n 2 42 HIS n 2 43 LEU n 2 44 PRO n 2 45 LEU n 2 46 LEU n 2 47 PRO n 2 48 ALA n 2 49 GLU n 2 50 SER n 2 51 GLU n 2 52 GLU n 2 53 GLU n 2 54 ASP n 2 55 GLU n 2 56 MET n 2 57 GLU n 2 58 VAL n 2 59 GLU n 2 60 ASP n 2 61 GLN n 2 62 ASP n 2 63 SER n 2 64 LYS n 2 65 GLU n 2 66 ALA n 2 67 LYS n 2 68 LYS n 2 69 PRO n 2 70 ASN n 2 71 ILE n 2 72 ILE n 2 73 ASN n 2 74 PHE n 2 75 ASP n 2 76 THR n 2 77 SER n 2 78 LEU n 2 79 PRO n 2 80 THR n 2 81 SER n 2 82 HIS n 2 83 THR n 2 84 TYR n 2 85 LEU n 2 86 GLY n 2 87 ALA n 2 88 ASP n 2 89 MET n 2 90 GLU n 2 91 GLU n 2 92 PHE n 2 93 HIS n 2 94 GLY n 2 95 ARG n 2 96 THR n 2 97 LEU n 2 98 HIS n 2 99 ASP n 2 100 ASP n 2 101 ASP n 2 102 SER n 2 103 CYS n 2 104 GLN n 2 105 VAL n 2 106 ILE n 2 107 PRO n 2 108 VAL n 2 109 LEU n 2 110 PRO n 2 111 GLN n 2 112 VAL n 2 113 MET n 2 114 MET n 2 115 ILE n 2 116 LEU n 2 117 ILE n 2 118 PRO n 2 119 GLY n 2 120 GLN n 2 121 THR n 2 122 LEU n 2 123 PRO n 2 124 LEU n 2 125 GLN n 2 126 LEU n 2 127 PHE n 2 128 HIS n 2 129 PRO n 2 130 GLN n 2 131 GLU n 2 132 VAL n 2 133 SER n 2 134 MET n 2 135 VAL n 2 136 ARG n 2 137 ASN n 2 138 LEU n 2 139 ILE n 2 140 GLN n 2 141 LYS n 2 142 ASP n 2 143 ARG n 2 144 THR n 2 145 PHE n 2 146 ALA n 2 147 VAL n 2 148 LEU n 2 149 ALA n 2 150 TYR n 2 151 SER n 2 152 ASN n 2 153 VAL n 2 154 GLN n 2 155 GLU n 2 156 ARG n 2 157 GLU n 2 158 ALA n 2 159 GLN n 2 160 PHE n 2 161 GLY n 2 162 THR n 2 163 THR n 2 164 ALA n 2 165 GLU n 2 166 ILE n 2 167 TYR n 2 168 ALA n 2 169 TYR n 2 170 ARG n 2 171 GLU n 2 172 GLU n 2 173 GLN n 2 174 ASP n 2 175 PHE n 2 176 GLY n 2 177 ILE n 2 178 GLU n 2 179 ILE n 2 180 VAL n 2 181 LYS n 2 182 VAL n 2 183 LYS n 2 184 ALA n 2 185 ILE n 2 186 GLY n 2 187 ARG n 2 188 GLN n 2 189 ARG n 2 190 PHE n 2 191 LYS n 2 192 VAL n 2 193 LEU n 2 194 GLU n 2 195 LEU n 2 196 ARG n 2 197 THR n 2 198 GLN n 2 199 SER n 2 200 ASP n 2 201 GLY n 2 202 ILE n 2 203 GLN n 2 204 GLN n 2 205 ALA n 2 206 LYS n 2 207 VAL n 2 208 GLN n 2 209 ILE n 2 210 LEU n 2 211 PRO n 2 212 GLU n 2 213 CYS n 2 214 VAL n 2 215 LEU n 2 216 PRO n 2 217 SER n 2 218 THR n 2 219 MET n 2 220 SER n 2 221 ALA n 2 222 VAL n 2 223 GLN n 2 224 LEU n 2 225 GLU n 2 226 SER n 2 227 LEU n 2 228 ASN n 2 229 LYS n 2 230 CYS n 2 231 GLN n 2 232 ILE n 2 233 PHE n 2 234 PRO n 2 235 SER n 2 236 LYS n 2 237 PRO n 2 238 VAL n 2 239 SER n 2 240 ARG n 2 241 GLU n 2 242 ASP n 2 243 GLN n 2 244 CYS n 2 245 SER n 2 246 TYR n 2 247 LYS n 2 248 TRP n 2 249 TRP n 2 250 GLN n 2 251 LYS n 2 252 TYR n 2 253 GLN n 2 254 LYS n 2 255 ARG n 2 256 LYS n 2 257 PHE n 2 258 HIS n 2 259 CYS n 2 260 ALA n 2 261 ASN n 2 262 LEU n 2 263 THR n 2 264 SER n 2 265 TRP n 2 266 PRO n 2 267 ARG n 2 268 TRP n 2 269 LEU n 2 270 TYR n 2 271 SER n 2 272 LEU n 2 273 TYR n 2 274 ASP n 2 275 ALA n 2 276 GLU n 2 277 THR n 2 278 LEU n 2 279 MET n 2 280 ASP n 2 281 ARG n 2 282 ILE n 2 283 LYS n 2 284 LYS n 2 285 GLN n 2 286 LEU n 2 287 ARG n 2 288 GLU n 2 289 TRP n 2 290 ASP n 2 291 GLU n 2 292 ASN n 2 293 LEU n 2 294 LYS n 2 295 ASP n 2 296 ASP n 2 297 SER n 2 298 LEU n 2 299 PRO n 2 300 SER n 2 301 ASN n 2 302 PRO n 2 303 ILE n 2 304 ASP n 2 305 PHE n 2 306 SER n 2 307 TYR n 2 308 ARG n 2 309 VAL n 2 310 ALA n 2 311 ALA n 2 312 CYS n 2 313 LEU n 2 314 PRO n 2 315 ILE n 2 316 ASP n 2 317 ASP n 2 318 VAL n 2 319 LEU n 2 320 ARG n 2 321 ILE n 2 322 GLN n 2 323 LEU n 2 324 LEU n 2 325 LYS n 2 326 ILE n 2 327 GLY n 2 328 SER n 2 329 ALA n 2 330 ILE n 2 331 GLN n 2 332 ARG n 2 333 LEU n 2 334 ARG n 2 335 CYS n 2 336 GLU n 2 337 LEU n 2 338 ASP n 2 339 ILE n 2 340 MET n 2 341 ASN n 2 342 LYS n 2 343 CYS n 2 344 THR n 2 345 SER n 2 346 LEU n 2 347 CYS n 2 348 CYS n 2 349 LYS n 2 350 GLN n 2 351 CYS n 2 352 GLN n 2 353 GLU n 2 354 THR n 2 355 GLU n 2 356 ILE n 2 357 THR n 2 358 THR n 2 359 LYS n 2 360 ASN n 2 361 GLU n 2 362 ILE n 2 363 PHE n 2 364 SER n 2 365 LEU n 2 366 SER n 2 367 LEU n 2 368 CYS n 2 369 GLY n 2 370 PRO n 2 371 MET n 2 372 ALA n 2 373 ALA n 2 374 TYR n 2 375 VAL n 2 376 ASN n 2 377 PRO n 2 378 HIS n 2 379 GLY n 2 380 TYR n 2 381 VAL n 2 382 HIS n 2 383 GLU n 2 384 THR n 2 385 LEU n 2 386 THR n 2 387 VAL n 2 388 TYR n 2 389 LYS n 2 390 ALA n 2 391 CYS n 2 392 ASN n 2 393 LEU n 2 394 ASN n 2 395 LEU n 2 396 ILE n 2 397 GLY n 2 398 ARG n 2 399 PRO n 2 400 SER n 2 401 THR n 2 402 GLU n 2 403 HIS n 2 404 SER n 2 405 TRP n 2 406 PHE n 2 407 PRO n 2 408 GLY n 2 409 TYR n 2 410 ALA n 2 411 TRP n 2 412 THR n 2 413 VAL n 2 414 ALA n 2 415 GLN n 2 416 CYS n 2 417 LYS n 2 418 ILE n 2 419 CYS n 2 420 ALA n 2 421 SER n 2 422 HIS n 2 423 ILE n 2 424 GLY n 2 425 TRP n 2 426 LYS n 2 427 PHE n 2 428 THR n 2 429 ALA n 2 430 THR n 2 431 LYS n 2 432 LYS n 2 433 ASP n 2 434 MET n 2 435 SER n 2 436 PRO n 2 437 GLN n 2 438 LYS n 2 439 PHE n 2 440 TRP n 2 441 GLY n 2 442 LEU n 2 443 THR n 2 444 ARG n 2 445 SER n 2 446 ALA n 2 447 LEU n 2 448 LEU n 2 449 PRO n 2 450 THR n 2 451 ILE n 2 452 PRO n 2 453 ASP n 2 454 THR n 2 455 GLU n 2 456 ASP n 2 457 GLU n 2 458 ILE n 2 459 SER n 2 460 PRO n 2 461 ASP n 2 462 LYS n 2 463 VAL n 2 464 ILE n 2 465 LEU n 2 466 CYS n 2 467 LEU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 174 human ? 'NSD2, KIAA1090, MMSET, TRX5, WHSC1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 467 human ? 'CRBN, AD-006' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? 'fall armyworm' 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? sf9 ? ? baculovirus ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1CSQ non-polymer . ;1-(5-{9-[(4-{2-[(2S,3R)-2-(3,5-dichloro-4-fluorophenyl)-5-oxomorpholin-3-yl]ethyl}piperazin-1-yl)methyl]-3-azaspiro[5.5]undecane-3-carbonyl}-2-methylphenyl)-1,3-diazinane-2,4-dione ; ? 'C39 H49 Cl2 F N6 O5' 771.748 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 201 ? ? ? A . n A 1 2 ALA 2 202 ? ? ? A . n A 1 3 LYS 3 203 ? ? ? A . n A 1 4 LYS 4 204 ? ? ? A . n A 1 5 GLU 5 205 ? ? ? A . n A 1 6 SER 6 206 ? ? ? A . n A 1 7 CYS 7 207 ? ? ? A . n A 1 8 PRO 8 208 ? ? ? A . n A 1 9 ASN 9 209 ? ? ? A . n A 1 10 THR 10 210 ? ? ? A . n A 1 11 GLY 11 211 ? ? ? A . n A 1 12 ARG 12 212 ? ? ? A . n A 1 13 ASP 13 213 ? ? ? A . n A 1 14 LYS 14 214 ? ? ? A . n A 1 15 ASP 15 215 ? ? ? A . n A 1 16 HIS 16 216 216 HIS HIS A . n A 1 17 LEU 17 217 217 LEU LEU A . n A 1 18 LEU 18 218 218 LEU LEU A . n A 1 19 LYS 19 219 219 LYS LYS A . n A 1 20 TYR 20 220 220 TYR TYR A . n A 1 21 ASN 21 221 221 ASN ASN A . n A 1 22 VAL 22 222 222 VAL VAL A . n A 1 23 GLY 23 223 223 GLY GLY A . n A 1 24 ASP 24 224 224 ASP ASP A . n A 1 25 LEU 25 225 225 LEU LEU A . n A 1 26 VAL 26 226 226 VAL VAL A . n A 1 27 TRP 27 227 227 TRP TRP A . n A 1 28 SER 28 228 228 SER SER A . n A 1 29 LYS 29 229 229 LYS LYS A . n A 1 30 VAL 30 230 230 VAL VAL A . n A 1 31 SER 31 231 231 SER SER A . n A 1 32 GLY 32 232 232 GLY GLY A . n A 1 33 TYR 33 233 233 TYR TYR A . n A 1 34 PRO 34 234 234 PRO PRO A . n A 1 35 TRP 35 235 235 TRP TRP A . n A 1 36 TRP 36 236 236 TRP TRP A . n A 1 37 PRO 37 237 237 PRO PRO A . n A 1 38 CYS 38 238 238 CYS CYS A . n A 1 39 MET 39 239 239 MET MET A . n A 1 40 VAL 40 240 240 VAL VAL A . n A 1 41 SER 41 241 241 SER SER A . n A 1 42 ALA 42 242 242 ALA ALA A . n A 1 43 ASP 43 243 243 ASP ASP A . n A 1 44 PRO 44 244 244 PRO PRO A . n A 1 45 LEU 45 245 245 LEU LEU A . n A 1 46 LEU 46 246 246 LEU LEU A . n A 1 47 HIS 47 247 247 HIS HIS A . n A 1 48 SER 48 248 248 SER SER A . n A 1 49 TYR 49 249 249 TYR TYR A . n A 1 50 THR 50 250 250 THR THR A . n A 1 51 LYS 51 251 251 LYS LYS A . n A 1 52 LEU 52 252 252 LEU LEU A . n A 1 53 LYS 53 253 253 LYS LYS A . n A 1 54 GLY 54 254 254 GLY GLY A . n A 1 55 GLN 55 255 255 GLN GLN A . n A 1 56 LYS 56 256 256 LYS LYS A . n A 1 57 LYS 57 257 257 LYS LYS A . n A 1 58 SER 58 258 258 SER SER A . n A 1 59 ALA 59 259 259 ALA ALA A . n A 1 60 ARG 60 260 260 ARG ARG A . n A 1 61 GLN 61 261 261 GLN GLN A . n A 1 62 TYR 62 262 262 TYR TYR A . n A 1 63 HIS 63 263 263 HIS HIS A . n A 1 64 VAL 64 264 264 VAL VAL A . n A 1 65 GLN 65 265 265 GLN GLN A . n A 1 66 PHE 66 266 266 PHE PHE A . n A 1 67 PHE 67 267 267 PHE PHE A . n A 1 68 GLY 68 268 268 GLY GLY A . n A 1 69 ASP 69 269 269 ASP ASP A . n A 1 70 ALA 70 270 270 ALA ALA A . n A 1 71 PRO 71 271 271 PRO PRO A . n A 1 72 GLU 72 272 272 GLU GLU A . n A 1 73 ARG 73 273 273 ARG ARG A . n A 1 74 ALA 74 274 274 ALA ALA A . n A 1 75 TRP 75 275 275 TRP TRP A . n A 1 76 ILE 76 276 276 ILE ILE A . n A 1 77 PHE 77 277 277 PHE PHE A . n A 1 78 GLU 78 278 278 GLU GLU A . n A 1 79 LYS 79 279 279 LYS LYS A . n A 1 80 SER 80 280 280 SER SER A . n A 1 81 LEU 81 281 281 LEU LEU A . n A 1 82 VAL 82 282 282 VAL VAL A . n A 1 83 ALA 83 283 283 ALA ALA A . n A 1 84 PHE 84 284 284 PHE PHE A . n A 1 85 GLU 85 285 285 GLU GLU A . n A 1 86 GLY 86 286 286 GLY GLY A . n A 1 87 GLU 87 287 287 GLU GLU A . n A 1 88 GLY 88 288 288 GLY GLY A . n A 1 89 GLN 89 289 289 GLN GLN A . n A 1 90 PHE 90 290 290 PHE PHE A . n A 1 91 GLU 91 291 291 GLU GLU A . n A 1 92 LYS 92 292 292 LYS LYS A . n A 1 93 LEU 93 293 293 LEU LEU A . n A 1 94 CYS 94 294 294 CYS CYS A . n A 1 95 GLN 95 295 295 GLN GLN A . n A 1 96 GLU 96 296 296 GLU GLU A . n A 1 97 SER 97 297 297 SER SER A . n A 1 98 ALA 98 298 298 ALA ALA A . n A 1 99 LYS 99 299 299 LYS LYS A . n A 1 100 GLN 100 300 300 GLN GLN A . n A 1 101 ALA 101 301 301 ALA ALA A . n A 1 102 PRO 102 302 302 PRO PRO A . n A 1 103 THR 103 303 303 THR THR A . n A 1 104 LYS 104 304 304 LYS LYS A . n A 1 105 ALA 105 305 305 ALA ALA A . n A 1 106 GLU 106 306 306 GLU GLU A . n A 1 107 LYS 107 307 307 LYS LYS A . n A 1 108 ILE 108 308 308 ILE ILE A . n A 1 109 LYS 109 309 309 LYS LYS A . n A 1 110 LEU 110 310 310 LEU LEU A . n A 1 111 LEU 111 311 311 LEU LEU A . n A 1 112 LYS 112 312 312 LYS LYS A . n A 1 113 PRO 113 313 313 PRO PRO A . n A 1 114 ILE 114 314 314 ILE ILE A . n A 1 115 SER 115 315 315 SER SER A . n A 1 116 GLY 116 316 316 GLY GLY A . n A 1 117 LYS 117 317 317 LYS LYS A . n A 1 118 LEU 118 318 318 LEU LEU A . n A 1 119 ARG 119 319 319 ARG ARG A . n A 1 120 ALA 120 320 320 ALA ALA A . n A 1 121 GLN 121 321 321 GLN GLN A . n A 1 122 TRP 122 322 322 TRP TRP A . n A 1 123 GLU 123 323 323 GLU GLU A . n A 1 124 MET 124 324 324 MET MET A . n A 1 125 GLY 125 325 325 GLY GLY A . n A 1 126 ILE 126 326 326 ILE ILE A . n A 1 127 VAL 127 327 327 VAL VAL A . n A 1 128 GLN 128 328 328 GLN GLN A . n A 1 129 ALA 129 329 329 ALA ALA A . n A 1 130 GLU 130 330 330 GLU GLU A . n A 1 131 GLU 131 331 331 GLU GLU A . n A 1 132 ALA 132 332 332 ALA ALA A . n A 1 133 ALA 133 333 333 ALA ALA A . n A 1 134 SER 134 334 334 SER SER A . n A 1 135 MET 135 335 335 MET MET A . n A 1 136 SER 136 336 336 SER SER A . n A 1 137 VAL 137 337 337 VAL VAL A . n A 1 138 GLU 138 338 338 GLU GLU A . n A 1 139 GLU 139 339 339 GLU GLU A . n A 1 140 ARG 140 340 340 ARG ARG A . n A 1 141 LYS 141 341 341 LYS LYS A . n A 1 142 ALA 142 342 342 ALA ALA A . n A 1 143 LYS 143 343 343 LYS LYS A . n A 1 144 PHE 144 344 344 PHE PHE A . n A 1 145 THR 145 345 345 THR THR A . n A 1 146 PHE 146 346 346 PHE PHE A . n A 1 147 LEU 147 347 347 LEU LEU A . n A 1 148 TYR 148 348 348 TYR TYR A . n A 1 149 VAL 149 349 349 VAL VAL A . n A 1 150 GLY 150 350 350 GLY GLY A . n A 1 151 ASP 151 351 351 ASP ASP A . n A 1 152 GLN 152 352 352 GLN GLN A . n A 1 153 LEU 153 353 353 LEU LEU A . n A 1 154 HIS 154 354 354 HIS HIS A . n A 1 155 LEU 155 355 355 LEU LEU A . n A 1 156 ASN 156 356 356 ASN ASN A . n A 1 157 PRO 157 357 357 PRO PRO A . n A 1 158 GLN 158 358 358 GLN GLN A . n A 1 159 VAL 159 359 359 VAL VAL A . n A 1 160 ALA 160 360 360 ALA ALA A . n A 1 161 LYS 161 361 361 LYS ALA A . n A 1 162 GLU 162 362 ? ? ? A . n A 1 163 ALA 163 363 ? ? ? A . n A 1 164 GLY 164 364 ? ? ? A . n A 1 165 ILE 165 365 ? ? ? A . n A 1 166 ALA 166 366 ? ? ? A . n A 1 167 ALA 167 367 ? ? ? A . n A 1 168 GLU 168 368 ? ? ? A . n A 1 169 HIS 169 369 ? ? ? A . n A 1 170 HIS 170 370 ? ? ? A . n A 1 171 HIS 171 371 ? ? ? A . n A 1 172 HIS 172 372 ? ? ? A . n A 1 173 HIS 173 373 ? ? ? A . n A 1 174 HIS 174 374 ? ? ? A . n B 2 1 MET 1 -24 ? ? ? B . n B 2 2 SER 2 -23 ? ? ? B . n B 2 3 TYR 3 -22 ? ? ? B . n B 2 4 TYR 4 -21 ? ? ? B . n B 2 5 HIS 5 -20 ? ? ? B . n B 2 6 HIS 6 -19 ? ? ? B . n B 2 7 HIS 7 -18 ? ? ? B . n B 2 8 HIS 8 -17 ? ? ? B . n B 2 9 HIS 9 -16 ? ? ? B . n B 2 10 HIS 10 -15 ? ? ? B . n B 2 11 ASP 11 -14 ? ? ? B . n B 2 12 TYR 12 -13 ? ? ? B . n B 2 13 ASP 13 -12 ? ? ? B . n B 2 14 ILE 14 -11 ? ? ? B . n B 2 15 PRO 15 -10 ? ? ? B . n B 2 16 THR 16 -9 ? ? ? B . n B 2 17 THR 17 -8 ? ? ? B . n B 2 18 GLY 18 -7 ? ? ? B . n B 2 19 LEU 19 -6 ? ? ? B . n B 2 20 VAL 20 -5 ? ? ? B . n B 2 21 PRO 21 -4 ? ? ? B . n B 2 22 ARG 22 -3 ? ? ? B . n B 2 23 GLY 23 -2 ? ? ? B . n B 2 24 SER 24 -1 ? ? ? B . n B 2 25 MET 25 0 ? ? ? B . n B 2 26 MET 26 1 ? ? ? B . n B 2 27 ALA 27 2 ? ? ? B . n B 2 28 GLY 28 3 ? ? ? B . n B 2 29 GLU 29 4 ? ? ? B . n B 2 30 GLY 30 5 ? ? ? B . n B 2 31 ASP 31 6 ? ? ? B . n B 2 32 GLN 32 7 ? ? ? B . n B 2 33 GLN 33 8 ? ? ? B . n B 2 34 ASP 34 9 ? ? ? B . n B 2 35 ALA 35 10 ? ? ? B . n B 2 36 ALA 36 11 ? ? ? B . n B 2 37 HIS 37 12 ? ? ? B . n B 2 38 ASN 38 13 ? ? ? B . n B 2 39 MET 39 14 ? ? ? B . n B 2 40 GLY 40 15 ? ? ? B . n B 2 41 ASN 41 16 ? ? ? B . n B 2 42 HIS 42 17 ? ? ? B . n B 2 43 LEU 43 18 ? ? ? B . n B 2 44 PRO 44 19 ? ? ? B . n B 2 45 LEU 45 20 ? ? ? B . n B 2 46 LEU 46 21 ? ? ? B . n B 2 47 PRO 47 22 ? ? ? B . n B 2 48 ALA 48 23 ? ? ? B . n B 2 49 GLU 49 24 ? ? ? B . n B 2 50 SER 50 25 ? ? ? B . n B 2 51 GLU 51 26 ? ? ? B . n B 2 52 GLU 52 27 ? ? ? B . n B 2 53 GLU 53 28 ? ? ? B . n B 2 54 ASP 54 29 ? ? ? B . n B 2 55 GLU 55 30 ? ? ? B . n B 2 56 MET 56 31 ? ? ? B . n B 2 57 GLU 57 32 ? ? ? B . n B 2 58 VAL 58 33 ? ? ? B . n B 2 59 GLU 59 34 ? ? ? B . n B 2 60 ASP 60 35 ? ? ? B . n B 2 61 GLN 61 36 ? ? ? B . n B 2 62 ASP 62 37 ? ? ? B . n B 2 63 SER 63 38 ? ? ? B . n B 2 64 LYS 64 39 ? ? ? B . n B 2 65 GLU 65 40 ? ? ? B . n B 2 66 ALA 66 41 ? ? ? B . n B 2 67 LYS 67 42 ? ? ? B . n B 2 68 LYS 68 43 ? ? ? B . n B 2 69 PRO 69 44 ? ? ? B . n B 2 70 ASN 70 45 ? ? ? B . n B 2 71 ILE 71 46 ? ? ? B . n B 2 72 ILE 72 47 ? ? ? B . n B 2 73 ASN 73 48 ? ? ? B . n B 2 74 PHE 74 49 ? ? ? B . n B 2 75 ASP 75 50 ? ? ? B . n B 2 76 THR 76 51 ? ? ? B . n B 2 77 SER 77 52 ? ? ? B . n B 2 78 LEU 78 53 ? ? ? B . n B 2 79 PRO 79 54 ? ? ? B . n B 2 80 THR 80 55 ? ? ? B . n B 2 81 SER 81 56 ? ? ? B . n B 2 82 HIS 82 57 ? ? ? B . n B 2 83 THR 83 58 ? ? ? B . n B 2 84 TYR 84 59 ? ? ? B . n B 2 85 LEU 85 60 ? ? ? B . n B 2 86 GLY 86 61 ? ? ? B . n B 2 87 ALA 87 62 ? ? ? B . n B 2 88 ASP 88 63 ? ? ? B . n B 2 89 MET 89 64 ? ? ? B . n B 2 90 GLU 90 65 ? ? ? B . n B 2 91 GLU 91 66 ? ? ? B . n B 2 92 PHE 92 67 ? ? ? B . n B 2 93 HIS 93 68 ? ? ? B . n B 2 94 GLY 94 69 ? ? ? B . n B 2 95 ARG 95 70 ? ? ? B . n B 2 96 THR 96 71 ? ? ? B . n B 2 97 LEU 97 72 ? ? ? B . n B 2 98 HIS 98 73 ? ? ? B . n B 2 99 ASP 99 74 ? ? ? B . n B 2 100 ASP 100 75 ? ? ? B . n B 2 101 ASP 101 76 ? ? ? B . n B 2 102 SER 102 77 ? ? ? B . n B 2 103 CYS 103 78 78 CYS CYS B . n B 2 104 GLN 104 79 79 GLN GLN B . n B 2 105 VAL 105 80 80 VAL VAL B . n B 2 106 ILE 106 81 81 ILE ILE B . n B 2 107 PRO 107 82 82 PRO PRO B . n B 2 108 VAL 108 83 83 VAL VAL B . n B 2 109 LEU 109 84 84 LEU LEU B . n B 2 110 PRO 110 85 85 PRO PRO B . n B 2 111 GLN 111 86 86 GLN GLN B . n B 2 112 VAL 112 87 87 VAL VAL B . n B 2 113 MET 113 88 88 MET MET B . n B 2 114 MET 114 89 89 MET MET B . n B 2 115 ILE 115 90 90 ILE ILE B . n B 2 116 LEU 116 91 91 LEU LEU B . n B 2 117 ILE 117 92 92 ILE ILE B . n B 2 118 PRO 118 93 93 PRO PRO B . n B 2 119 GLY 119 94 94 GLY GLY B . n B 2 120 GLN 120 95 95 GLN GLN B . n B 2 121 THR 121 96 96 THR THR B . n B 2 122 LEU 122 97 97 LEU LEU B . n B 2 123 PRO 123 98 98 PRO PRO B . n B 2 124 LEU 124 99 99 LEU LEU B . n B 2 125 GLN 125 100 100 GLN GLN B . n B 2 126 LEU 126 101 101 LEU LEU B . n B 2 127 PHE 127 102 102 PHE PHE B . n B 2 128 HIS 128 103 103 HIS HIS B . n B 2 129 PRO 129 104 104 PRO PRO B . n B 2 130 GLN 130 105 105 GLN GLN B . n B 2 131 GLU 131 106 106 GLU GLU B . n B 2 132 VAL 132 107 107 VAL VAL B . n B 2 133 SER 133 108 108 SER SER B . n B 2 134 MET 134 109 109 MET MET B . n B 2 135 VAL 135 110 110 VAL VAL B . n B 2 136 ARG 136 111 111 ARG ARG B . n B 2 137 ASN 137 112 112 ASN ASN B . n B 2 138 LEU 138 113 113 LEU LEU B . n B 2 139 ILE 139 114 114 ILE ILE B . n B 2 140 GLN 140 115 115 GLN GLN B . n B 2 141 LYS 141 116 116 LYS LYS B . n B 2 142 ASP 142 117 117 ASP ASP B . n B 2 143 ARG 143 118 118 ARG ARG B . n B 2 144 THR 144 119 119 THR THR B . n B 2 145 PHE 145 120 120 PHE PHE B . n B 2 146 ALA 146 121 121 ALA ALA B . n B 2 147 VAL 147 122 122 VAL VAL B . n B 2 148 LEU 148 123 123 LEU LEU B . n B 2 149 ALA 149 124 124 ALA ALA B . n B 2 150 TYR 150 125 125 TYR TYR B . n B 2 151 SER 151 126 126 SER SER B . n B 2 152 ASN 152 127 127 ASN ASN B . n B 2 153 VAL 153 128 128 VAL VAL B . n B 2 154 GLN 154 129 129 GLN GLN B . n B 2 155 GLU 155 130 130 GLU GLU B . n B 2 156 ARG 156 131 131 ARG ARG B . n B 2 157 GLU 157 132 132 GLU GLU B . n B 2 158 ALA 158 133 133 ALA ALA B . n B 2 159 GLN 159 134 134 GLN GLN B . n B 2 160 PHE 160 135 135 PHE PHE B . n B 2 161 GLY 161 136 136 GLY GLY B . n B 2 162 THR 162 137 137 THR THR B . n B 2 163 THR 163 138 138 THR THR B . n B 2 164 ALA 164 139 139 ALA ALA B . n B 2 165 GLU 165 140 140 GLU GLU B . n B 2 166 ILE 166 141 141 ILE ILE B . n B 2 167 TYR 167 142 142 TYR TYR B . n B 2 168 ALA 168 143 143 ALA ALA B . n B 2 169 TYR 169 144 144 TYR TYR B . n B 2 170 ARG 170 145 145 ARG ARG B . n B 2 171 GLU 171 146 146 GLU GLU B . n B 2 172 GLU 172 147 147 GLU GLU B . n B 2 173 GLN 173 148 148 GLN GLN B . n B 2 174 ASP 174 149 149 ASP ASP B . n B 2 175 PHE 175 150 150 PHE PHE B . n B 2 176 GLY 176 151 151 GLY GLY B . n B 2 177 ILE 177 152 152 ILE ILE B . n B 2 178 GLU 178 153 153 GLU GLU B . n B 2 179 ILE 179 154 154 ILE ILE B . n B 2 180 VAL 180 155 155 VAL VAL B . n B 2 181 LYS 181 156 156 LYS LYS B . n B 2 182 VAL 182 157 157 VAL VAL B . n B 2 183 LYS 183 158 158 LYS LYS B . n B 2 184 ALA 184 159 159 ALA ALA B . n B 2 185 ILE 185 160 160 ILE ILE B . n B 2 186 GLY 186 161 161 GLY GLY B . n B 2 187 ARG 187 162 162 ARG ARG B . n B 2 188 GLN 188 163 163 GLN GLN B . n B 2 189 ARG 189 164 164 ARG ARG B . n B 2 190 PHE 190 165 165 PHE PHE B . n B 2 191 LYS 191 166 166 LYS LYS B . n B 2 192 VAL 192 167 167 VAL VAL B . n B 2 193 LEU 193 168 168 LEU LEU B . n B 2 194 GLU 194 169 169 GLU GLU B . n B 2 195 LEU 195 170 170 LEU LEU B . n B 2 196 ARG 196 171 171 ARG ARG B . n B 2 197 THR 197 172 172 THR THR B . n B 2 198 GLN 198 173 173 GLN GLN B . n B 2 199 SER 199 174 174 SER SER B . n B 2 200 ASP 200 175 175 ASP ASP B . n B 2 201 GLY 201 176 176 GLY GLY B . n B 2 202 ILE 202 177 177 ILE ILE B . n B 2 203 GLN 203 178 178 GLN GLN B . n B 2 204 GLN 204 179 179 GLN GLN B . n B 2 205 ALA 205 180 180 ALA ALA B . n B 2 206 LYS 206 181 181 LYS LYS B . n B 2 207 VAL 207 182 182 VAL VAL B . n B 2 208 GLN 208 183 183 GLN GLN B . n B 2 209 ILE 209 184 184 ILE ILE B . n B 2 210 LEU 210 185 185 LEU LEU B . n B 2 211 PRO 211 186 186 PRO PRO B . n B 2 212 GLU 212 187 187 GLU GLU B . n B 2 213 CYS 213 188 ? ? ? B . n B 2 214 VAL 214 189 ? ? ? B . n B 2 215 LEU 215 190 ? ? ? B . n B 2 216 PRO 216 191 ? ? ? B . n B 2 217 SER 217 192 ? ? ? B . n B 2 218 THR 218 193 ? ? ? B . n B 2 219 MET 219 194 ? ? ? B . n B 2 220 SER 220 195 ? ? ? B . n B 2 221 ALA 221 196 ? ? ? B . n B 2 222 VAL 222 197 ? ? ? B . n B 2 223 GLN 223 198 ? ? ? B . n B 2 224 LEU 224 199 ? ? ? B . n B 2 225 GLU 225 200 ? ? ? B . n B 2 226 SER 226 201 ? ? ? B . n B 2 227 LEU 227 202 ? ? ? B . n B 2 228 ASN 228 203 ? ? ? B . n B 2 229 LYS 229 204 ? ? ? B . n B 2 230 CYS 230 205 ? ? ? B . n B 2 231 GLN 231 206 ? ? ? B . n B 2 232 ILE 232 207 ? ? ? B . n B 2 233 PHE 233 208 ? ? ? B . n B 2 234 PRO 234 209 ? ? ? B . n B 2 235 SER 235 210 ? ? ? B . n B 2 236 LYS 236 211 ? ? ? B . n B 2 237 PRO 237 212 ? ? ? B . n B 2 238 VAL 238 213 ? ? ? B . n B 2 239 SER 239 214 ? ? ? B . n B 2 240 ARG 240 215 ? ? ? B . n B 2 241 GLU 241 216 ? ? ? B . n B 2 242 ASP 242 217 ? ? ? B . n B 2 243 GLN 243 218 ? ? ? B . n B 2 244 CYS 244 219 ? ? ? B . n B 2 245 SER 245 220 ? ? ? B . n B 2 246 TYR 246 221 ? ? ? B . n B 2 247 LYS 247 222 ? ? ? B . n B 2 248 TRP 248 223 ? ? ? B . n B 2 249 TRP 249 224 ? ? ? B . n B 2 250 GLN 250 225 ? ? ? B . n B 2 251 LYS 251 226 ? ? ? B . n B 2 252 TYR 252 227 ? ? ? B . n B 2 253 GLN 253 228 ? ? ? B . n B 2 254 LYS 254 229 ? ? ? B . n B 2 255 ARG 255 230 ? ? ? B . n B 2 256 LYS 256 231 ? ? ? B . n B 2 257 PHE 257 232 ? ? ? B . n B 2 258 HIS 258 233 ? ? ? B . n B 2 259 CYS 259 234 ? ? ? B . n B 2 260 ALA 260 235 ? ? ? B . n B 2 261 ASN 261 236 ? ? ? B . n B 2 262 LEU 262 237 ? ? ? B . n B 2 263 THR 263 238 ? ? ? B . n B 2 264 SER 264 239 ? ? ? B . n B 2 265 TRP 265 240 ? ? ? B . n B 2 266 PRO 266 241 ? ? ? B . n B 2 267 ARG 267 242 ? ? ? B . n B 2 268 TRP 268 243 ? ? ? B . n B 2 269 LEU 269 244 ? ? ? B . n B 2 270 TYR 270 245 ? ? ? B . n B 2 271 SER 271 246 ? ? ? B . n B 2 272 LEU 272 247 ? ? ? B . n B 2 273 TYR 273 248 ? ? ? B . n B 2 274 ASP 274 249 ? ? ? B . n B 2 275 ALA 275 250 ? ? ? B . n B 2 276 GLU 276 251 ? ? ? B . n B 2 277 THR 277 252 ? ? ? B . n B 2 278 LEU 278 253 253 LEU LEU B . n B 2 279 MET 279 254 254 MET MET B . n B 2 280 ASP 280 255 255 ASP ASP B . n B 2 281 ARG 281 256 256 ARG ARG B . n B 2 282 ILE 282 257 257 ILE ILE B . n B 2 283 LYS 283 258 258 LYS LYS B . n B 2 284 LYS 284 259 259 LYS LYS B . n B 2 285 GLN 285 260 260 GLN GLN B . n B 2 286 LEU 286 261 261 LEU LEU B . n B 2 287 ARG 287 262 262 ARG ARG B . n B 2 288 GLU 288 263 263 GLU GLU B . n B 2 289 TRP 289 264 264 TRP TRP B . n B 2 290 ASP 290 265 265 ASP ASP B . n B 2 291 GLU 291 266 266 GLU GLU B . n B 2 292 ASN 292 267 267 ASN ASN B . n B 2 293 LEU 293 268 268 LEU LEU B . n B 2 294 LYS 294 269 269 LYS LYS B . n B 2 295 ASP 295 270 270 ASP ASP B . n B 2 296 ASP 296 271 271 ASP ASP B . n B 2 297 SER 297 272 272 SER SER B . n B 2 298 LEU 298 273 273 LEU LEU B . n B 2 299 PRO 299 274 274 PRO PRO B . n B 2 300 SER 300 275 275 SER SER B . n B 2 301 ASN 301 276 276 ASN ASN B . n B 2 302 PRO 302 277 277 PRO PRO B . n B 2 303 ILE 303 278 278 ILE ILE B . n B 2 304 ASP 304 279 279 ASP ASP B . n B 2 305 PHE 305 280 280 PHE PHE B . n B 2 306 SER 306 281 281 SER SER B . n B 2 307 TYR 307 282 282 TYR TYR B . n B 2 308 ARG 308 283 283 ARG ARG B . n B 2 309 VAL 309 284 284 VAL VAL B . n B 2 310 ALA 310 285 285 ALA ALA B . n B 2 311 ALA 311 286 286 ALA ALA B . n B 2 312 CYS 312 287 287 CYS CYS B . n B 2 313 LEU 313 288 288 LEU LEU B . n B 2 314 PRO 314 289 289 PRO PRO B . n B 2 315 ILE 315 290 290 ILE ILE B . n B 2 316 ASP 316 291 291 ASP ASP B . n B 2 317 ASP 317 292 292 ASP ASP B . n B 2 318 VAL 318 293 293 VAL VAL B . n B 2 319 LEU 319 294 294 LEU LEU B . n B 2 320 ARG 320 295 295 ARG ARG B . n B 2 321 ILE 321 296 296 ILE ILE B . n B 2 322 GLN 322 297 297 GLN GLN B . n B 2 323 LEU 323 298 298 LEU LEU B . n B 2 324 LEU 324 299 299 LEU LEU B . n B 2 325 LYS 325 300 300 LYS LYS B . n B 2 326 ILE 326 301 301 ILE ILE B . n B 2 327 GLY 327 302 302 GLY GLY B . n B 2 328 SER 328 303 303 SER SER B . n B 2 329 ALA 329 304 304 ALA ALA B . n B 2 330 ILE 330 305 305 ILE ILE B . n B 2 331 GLN 331 306 306 GLN GLN B . n B 2 332 ARG 332 307 307 ARG ARG B . n B 2 333 LEU 333 308 308 LEU LEU B . n B 2 334 ARG 334 309 309 ARG ARG B . n B 2 335 CYS 335 310 310 CYS CYS B . n B 2 336 GLU 336 311 311 GLU GLU B . n B 2 337 LEU 337 312 312 LEU LEU B . n B 2 338 ASP 338 313 313 ASP ASP B . n B 2 339 ILE 339 314 314 ILE ILE B . n B 2 340 MET 340 315 315 MET MET B . n B 2 341 ASN 341 316 316 ASN ASN B . n B 2 342 LYS 342 317 317 LYS LYS B . n B 2 343 CYS 343 318 318 CYS CYS B . n B 2 344 THR 344 319 319 THR THR B . n B 2 345 SER 345 320 320 SER SER B . n B 2 346 LEU 346 321 321 LEU LEU B . n B 2 347 CYS 347 322 322 CYS CYS B . n B 2 348 CYS 348 323 323 CYS CYS B . n B 2 349 LYS 349 324 324 LYS LYS B . n B 2 350 GLN 350 325 325 GLN GLN B . n B 2 351 CYS 351 326 326 CYS CYS B . n B 2 352 GLN 352 327 327 GLN GLN B . n B 2 353 GLU 353 328 328 GLU GLU B . n B 2 354 THR 354 329 329 THR THR B . n B 2 355 GLU 355 330 330 GLU GLU B . n B 2 356 ILE 356 331 331 ILE ILE B . n B 2 357 THR 357 332 332 THR THR B . n B 2 358 THR 358 333 333 THR THR B . n B 2 359 LYS 359 334 334 LYS LYS B . n B 2 360 ASN 360 335 335 ASN ASN B . n B 2 361 GLU 361 336 336 GLU GLU B . n B 2 362 ILE 362 337 337 ILE ILE B . n B 2 363 PHE 363 338 338 PHE PHE B . n B 2 364 SER 364 339 339 SER SER B . n B 2 365 LEU 365 340 340 LEU LEU B . n B 2 366 SER 366 341 341 SER SER B . n B 2 367 LEU 367 342 342 LEU LEU B . n B 2 368 CYS 368 343 343 CYS CYS B . n B 2 369 GLY 369 344 344 GLY GLY B . n B 2 370 PRO 370 345 345 PRO PRO B . n B 2 371 MET 371 346 346 MET MET B . n B 2 372 ALA 372 347 347 ALA ALA B . n B 2 373 ALA 373 348 348 ALA ALA B . n B 2 374 TYR 374 349 349 TYR TYR B . n B 2 375 VAL 375 350 350 VAL VAL B . n B 2 376 ASN 376 351 351 ASN ASN B . n B 2 377 PRO 377 352 352 PRO PRO B . n B 2 378 HIS 378 353 353 HIS HIS B . n B 2 379 GLY 379 354 354 GLY GLY B . n B 2 380 TYR 380 355 355 TYR TYR B . n B 2 381 VAL 381 356 356 VAL VAL B . n B 2 382 HIS 382 357 357 HIS HIS B . n B 2 383 GLU 383 358 358 GLU GLU B . n B 2 384 THR 384 359 359 THR THR B . n B 2 385 LEU 385 360 360 LEU LEU B . n B 2 386 THR 386 361 361 THR THR B . n B 2 387 VAL 387 362 362 VAL VAL B . n B 2 388 TYR 388 363 363 TYR TYR B . n B 2 389 LYS 389 364 364 LYS LYS B . n B 2 390 ALA 390 365 365 ALA ALA B . n B 2 391 CYS 391 366 366 CYS CYS B . n B 2 392 ASN 392 367 367 ASN ASN B . n B 2 393 LEU 393 368 368 LEU LEU B . n B 2 394 ASN 394 369 369 ASN ASN B . n B 2 395 LEU 395 370 370 LEU LEU B . n B 2 396 ILE 396 371 371 ILE ILE B . n B 2 397 GLY 397 372 372 GLY GLY B . n B 2 398 ARG 398 373 373 ARG ARG B . n B 2 399 PRO 399 374 374 PRO PRO B . n B 2 400 SER 400 375 375 SER SER B . n B 2 401 THR 401 376 376 THR THR B . n B 2 402 GLU 402 377 377 GLU GLU B . n B 2 403 HIS 403 378 378 HIS HIS B . n B 2 404 SER 404 379 379 SER SER B . n B 2 405 TRP 405 380 380 TRP TRP B . n B 2 406 PHE 406 381 381 PHE PHE B . n B 2 407 PRO 407 382 382 PRO PRO B . n B 2 408 GLY 408 383 383 GLY GLY B . n B 2 409 TYR 409 384 384 TYR TYR B . n B 2 410 ALA 410 385 385 ALA ALA B . n B 2 411 TRP 411 386 386 TRP TRP B . n B 2 412 THR 412 387 387 THR THR B . n B 2 413 VAL 413 388 388 VAL VAL B . n B 2 414 ALA 414 389 389 ALA ALA B . n B 2 415 GLN 415 390 390 GLN GLN B . n B 2 416 CYS 416 391 391 CYS CYS B . n B 2 417 LYS 417 392 392 LYS LYS B . n B 2 418 ILE 418 393 393 ILE ILE B . n B 2 419 CYS 419 394 394 CYS CYS B . n B 2 420 ALA 420 395 395 ALA ALA B . n B 2 421 SER 421 396 396 SER SER B . n B 2 422 HIS 422 397 397 HIS HIS B . n B 2 423 ILE 423 398 398 ILE ILE B . n B 2 424 GLY 424 399 399 GLY GLY B . n B 2 425 TRP 425 400 400 TRP TRP B . n B 2 426 LYS 426 401 401 LYS LYS B . n B 2 427 PHE 427 402 402 PHE PHE B . n B 2 428 THR 428 403 403 THR THR B . n B 2 429 ALA 429 404 404 ALA ALA B . n B 2 430 THR 430 405 405 THR THR B . n B 2 431 LYS 431 406 406 LYS LYS B . n B 2 432 LYS 432 407 407 LYS LYS B . n B 2 433 ASP 433 408 408 ASP ASP B . n B 2 434 MET 434 409 409 MET MET B . n B 2 435 SER 435 410 410 SER SER B . n B 2 436 PRO 436 411 411 PRO PRO B . n B 2 437 GLN 437 412 412 GLN GLN B . n B 2 438 LYS 438 413 413 LYS LYS B . n B 2 439 PHE 439 414 414 PHE PHE B . n B 2 440 TRP 440 415 415 TRP TRP B . n B 2 441 GLY 441 416 416 GLY GLY B . n B 2 442 LEU 442 417 417 LEU LEU B . n B 2 443 THR 443 418 418 THR THR B . n B 2 444 ARG 444 419 419 ARG ARG B . n B 2 445 SER 445 420 420 SER SER B . n B 2 446 ALA 446 421 421 ALA ALA B . n B 2 447 LEU 447 422 422 LEU LEU B . n B 2 448 LEU 448 423 423 LEU LEU B . n B 2 449 PRO 449 424 424 PRO PRO B . n B 2 450 THR 450 425 425 THR THR B . n B 2 451 ILE 451 426 426 ILE ILE B . n B 2 452 PRO 452 427 427 PRO PRO B . n B 2 453 ASP 453 428 428 ASP ASP B . n B 2 454 THR 454 429 429 THR THR B . n B 2 455 GLU 455 430 ? ? ? B . n B 2 456 ASP 456 431 ? ? ? B . n B 2 457 GLU 457 432 ? ? ? B . n B 2 458 ILE 458 433 ? ? ? B . n B 2 459 SER 459 434 ? ? ? B . n B 2 460 PRO 460 435 ? ? ? B . n B 2 461 ASP 461 436 ? ? ? B . n B 2 462 LYS 462 437 ? ? ? B . n B 2 463 VAL 463 438 ? ? ? B . n B 2 464 ILE 464 439 ? ? ? B . n B 2 465 LEU 465 440 ? ? ? B . n B 2 466 CYS 466 441 ? ? ? B . n B 2 467 LEU 467 442 ? ? ? B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1CSQ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1CSQ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1CSQ 1 4000 4000 A1CSQ LIG A . D 4 ZN 1 501 3999 ZN ZN B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 361 ? CG ? A LYS 161 CG 2 1 Y 1 A LYS 361 ? CD ? A LYS 161 CD 3 1 Y 1 A LYS 361 ? CE ? A LYS 161 CE 4 1 Y 1 A LYS 361 ? NZ ? A LYS 161 NZ # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9Y61 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9Y61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9Y61 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9Y61 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.1 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 3604 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.551 ? 4882 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 12.364 ? 1384 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.040 ? 532 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 616 ? f_plane_restr ? ? ? # _struct.entry_id 9Y61 _struct.title 'Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9Y61 _struct_keywords.text 'Cereblon, degrader, DDB1, NSD2, PWWP1, LDD, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP NSD2_HUMAN O96028 ? 1 ;AKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSL VAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAK EAGIAAE ; 202 2 UNP CRBN_HUMAN Q96SW2 ? 2 ;MAGEGDQQDAAHNMGNHLPLLPAESEEEDEMEVEDQDSKEAKKPNIINFDTSLPTSHTYLGADMEEFHGRTLHDDDSCQV IPVLPQVMMILIPGQTLPLQLFHPQEVSMVRNLIQKDRTFAVLAYSNVQEREAQFGTTAEIYAYREEQDFGIEIVKVKAI GRQRFKVLELRTQSDGIQQAKVQILPECVLPSTMSAVQLESLNKCQIFPSKPVSREDQCSYKWWQKYQKRKFHCANLTSW PRWLYSLYDAETLMDRIKKQLREWDENLKDDSLPSNPIDFSYRVAACLPIDDVLRIQLLKIGSAIQRLRCELDIMNKCTS LCCKQCQETEITTKNEIFSLSLCGPMAAYVNPHGYVHETLTVYKACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGW KFTATKKDMSPQKFWGLTRSALLPTIPDTEDEISPDKVILCL ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9Y61 A 2 ? 168 ? O96028 202 ? 368 ? 202 368 2 2 9Y61 B 26 ? 467 ? Q96SW2 1 ? 442 ? 1 442 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9Y61 MET A 1 ? UNP O96028 ? ? 'initiating methionine' 201 1 1 9Y61 HIS A 169 ? UNP O96028 ? ? 'expression tag' 369 2 1 9Y61 HIS A 170 ? UNP O96028 ? ? 'expression tag' 370 3 1 9Y61 HIS A 171 ? UNP O96028 ? ? 'expression tag' 371 4 1 9Y61 HIS A 172 ? UNP O96028 ? ? 'expression tag' 372 5 1 9Y61 HIS A 173 ? UNP O96028 ? ? 'expression tag' 373 6 1 9Y61 HIS A 174 ? UNP O96028 ? ? 'expression tag' 374 7 2 9Y61 MET B 1 ? UNP Q96SW2 ? ? 'expression tag' -24 8 2 9Y61 SER B 2 ? UNP Q96SW2 ? ? 'expression tag' -23 9 2 9Y61 TYR B 3 ? UNP Q96SW2 ? ? 'expression tag' -22 10 2 9Y61 TYR B 4 ? UNP Q96SW2 ? ? 'expression tag' -21 11 2 9Y61 HIS B 5 ? UNP Q96SW2 ? ? 'expression tag' -20 12 2 9Y61 HIS B 6 ? UNP Q96SW2 ? ? 'expression tag' -19 13 2 9Y61 HIS B 7 ? UNP Q96SW2 ? ? 'expression tag' -18 14 2 9Y61 HIS B 8 ? UNP Q96SW2 ? ? 'expression tag' -17 15 2 9Y61 HIS B 9 ? UNP Q96SW2 ? ? 'expression tag' -16 16 2 9Y61 HIS B 10 ? UNP Q96SW2 ? ? 'expression tag' -15 17 2 9Y61 ASP B 11 ? UNP Q96SW2 ? ? 'expression tag' -14 18 2 9Y61 TYR B 12 ? UNP Q96SW2 ? ? 'expression tag' -13 19 2 9Y61 ASP B 13 ? UNP Q96SW2 ? ? 'expression tag' -12 20 2 9Y61 ILE B 14 ? UNP Q96SW2 ? ? 'expression tag' -11 21 2 9Y61 PRO B 15 ? UNP Q96SW2 ? ? 'expression tag' -10 22 2 9Y61 THR B 16 ? UNP Q96SW2 ? ? 'expression tag' -9 23 2 9Y61 THR B 17 ? UNP Q96SW2 ? ? 'expression tag' -8 24 2 9Y61 GLY B 18 ? UNP Q96SW2 ? ? 'expression tag' -7 25 2 9Y61 LEU B 19 ? UNP Q96SW2 ? ? 'expression tag' -6 26 2 9Y61 VAL B 20 ? UNP Q96SW2 ? ? 'expression tag' -5 27 2 9Y61 PRO B 21 ? UNP Q96SW2 ? ? 'expression tag' -4 28 2 9Y61 ARG B 22 ? UNP Q96SW2 ? ? 'expression tag' -3 29 2 9Y61 GLY B 23 ? UNP Q96SW2 ? ? 'expression tag' -2 30 2 9Y61 SER B 24 ? UNP Q96SW2 ? ? 'expression tag' -1 31 2 9Y61 MET B 25 ? UNP Q96SW2 ? ? 'expression tag' 0 32 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 54 ? LYS A 56 ? GLY A 254 LYS A 256 5 ? 3 HELX_P HELX_P2 AA2 GLU A 87 ? GLN A 100 ? GLU A 287 GLN A 300 1 ? 14 HELX_P HELX_P3 AA3 THR A 103 ? LEU A 110 ? THR A 303 LEU A 310 1 ? 8 HELX_P HELX_P4 AA4 SER A 115 ? SER A 134 ? SER A 315 SER A 334 1 ? 20 HELX_P HELX_P5 AA5 SER A 136 ? THR A 145 ? SER A 336 THR A 345 1 ? 10 HELX_P HELX_P6 AA6 ASN A 156 ? LYS A 161 ? ASN A 356 LYS A 361 1 ? 6 HELX_P HELX_P7 AA7 GLU B 131 ? GLN B 140 ? GLU B 106 GLN B 115 1 ? 10 HELX_P HELX_P8 AA8 MET B 279 ? ASP B 290 ? MET B 254 ASP B 265 1 ? 12 HELX_P HELX_P9 AA9 ASN B 301 ? ALA B 311 ? ASN B 276 ALA B 286 1 ? 11 HELX_P HELX_P10 AB1 ASP B 316 ? ILE B 326 ? ASP B 291 ILE B 301 1 ? 11 HELX_P HELX_P11 AB2 SER B 328 ? CYS B 343 ? SER B 303 CYS B 318 1 ? 16 HELX_P HELX_P12 AB3 ASN B 360 ? ILE B 362 ? ASN B 335 ILE B 337 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B CYS 348 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 323 B ZN 501 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc2 metalc ? ? B CYS 351 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 326 B ZN 501 1_555 ? ? ? ? ? ? ? 2.323 ? ? metalc3 metalc ? ? B CYS 416 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 391 B ZN 501 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc4 metalc ? ? B CYS 419 SG ? ? ? 1_555 D ZN . ZN ? ? B CYS 394 B ZN 501 1_555 ? ? ? ? ? ? ? 2.318 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? B CYS 348 ? B CYS 323 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 351 ? B CYS 326 ? 1_555 110.7 ? 2 SG ? B CYS 348 ? B CYS 323 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 416 ? B CYS 391 ? 1_555 114.7 ? 3 SG ? B CYS 351 ? B CYS 326 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 416 ? B CYS 391 ? 1_555 108.1 ? 4 SG ? B CYS 348 ? B CYS 323 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 419 ? B CYS 394 ? 1_555 104.2 ? 5 SG ? B CYS 351 ? B CYS 326 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 419 ? B CYS 394 ? 1_555 112.0 ? 6 SG ? B CYS 416 ? B CYS 391 ? 1_555 ZN ? D ZN . ? B ZN 501 ? 1_555 SG ? B CYS 419 ? B CYS 394 ? 1_555 107.1 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 435 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 410 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 436 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 411 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.82 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 7 ? AA5 ? 3 ? AA6 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA6 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 50 ? LEU A 52 ? THR A 250 LEU A 252 AA1 2 ARG A 60 ? PHE A 66 ? ARG A 260 PHE A 266 AA1 3 ARG A 73 ? PHE A 77 ? ARG A 273 PHE A 277 AA2 1 THR A 50 ? LEU A 52 ? THR A 250 LEU A 252 AA2 2 ARG A 60 ? PHE A 66 ? ARG A 260 PHE A 266 AA2 3 TRP A 36 ? VAL A 40 ? TRP A 236 VAL A 240 AA2 4 LEU A 25 ? SER A 28 ? LEU A 225 SER A 228 AA2 5 LEU A 81 ? ALA A 83 ? LEU A 281 ALA A 283 AA3 1 LEU A 147 ? VAL A 149 ? LEU A 347 VAL A 349 AA3 2 GLN A 152 ? HIS A 154 ? GLN A 352 HIS A 354 AA4 1 THR B 121 ? LEU B 126 ? THR B 96 LEU B 101 AA4 2 ILE B 179 ? THR B 197 ? ILE B 154 THR B 172 AA4 3 GLN B 203 ? ILE B 209 ? GLN B 178 ILE B 184 AA4 4 GLN B 104 ? VAL B 108 ? GLN B 79 VAL B 83 AA4 5 THR B 144 ? LEU B 148 ? THR B 119 LEU B 123 AA4 6 GLY B 161 ? GLU B 172 ? GLY B 136 GLU B 147 AA4 7 ILE B 179 ? THR B 197 ? ILE B 154 THR B 172 AA5 1 GLU B 355 ? THR B 358 ? GLU B 330 THR B 333 AA5 2 SER B 345 ? CYS B 348 ? SER B 320 CYS B 323 AA5 3 LEU B 447 ? THR B 450 ? LEU B 422 THR B 425 AA6 1 MET B 371 ? ASN B 376 ? MET B 346 ASN B 351 AA6 2 GLY B 379 ? VAL B 387 ? GLY B 354 VAL B 362 AA6 3 LYS B 438 ? THR B 443 ? LYS B 413 THR B 418 AA6 4 HIS B 422 ? ALA B 429 ? HIS B 397 ALA B 404 AA6 5 TYR B 409 ? CYS B 416 ? TYR B 384 CYS B 391 AA6 6 LEU B 393 ? SER B 400 ? LEU B 368 SER B 375 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 51 ? N LYS A 251 O GLN A 61 ? O GLN A 261 AA1 2 3 N VAL A 64 ? N VAL A 264 O ALA A 74 ? O ALA A 274 AA2 1 2 N LYS A 51 ? N LYS A 251 O GLN A 61 ? O GLN A 261 AA2 2 3 O GLN A 65 ? O GLN A 265 N MET A 39 ? N MET A 239 AA2 3 4 O TRP A 36 ? O TRP A 236 N SER A 28 ? N SER A 228 AA2 4 5 N TRP A 27 ? N TRP A 227 O VAL A 82 ? O VAL A 282 AA3 1 2 N VAL A 149 ? N VAL A 349 O GLN A 152 ? O GLN A 352 AA4 1 2 N LEU B 124 ? N LEU B 99 O VAL B 182 ? O VAL B 157 AA4 2 3 N ARG B 196 ? N ARG B 171 O GLN B 204 ? O GLN B 179 AA4 3 4 O VAL B 207 ? O VAL B 182 N GLN B 104 ? N GLN B 79 AA4 4 5 N PRO B 107 ? N PRO B 82 O ALA B 146 ? O ALA B 121 AA4 5 6 N PHE B 145 ? N PHE B 120 O ALA B 164 ? O ALA B 139 AA4 6 7 N GLU B 165 ? N GLU B 140 O ILE B 185 ? O ILE B 160 AA5 1 2 O ILE B 356 ? O ILE B 331 N LEU B 346 ? N LEU B 321 AA5 2 3 N CYS B 347 ? N CYS B 322 O LEU B 448 ? O LEU B 423 AA6 1 2 N ALA B 372 ? N ALA B 347 O THR B 384 ? O THR B 359 AA6 2 3 N VAL B 387 ? N VAL B 362 O TRP B 440 ? O TRP B 415 AA6 3 4 O GLY B 441 ? O GLY B 416 N TRP B 425 ? N TRP B 400 AA6 4 5 O THR B 428 ? O THR B 403 N ALA B 410 ? N ALA B 385 AA6 5 6 O GLN B 415 ? O GLN B 390 N ASN B 394 ? N ASN B 369 # _pdbx_entry_details.entry_id 9Y61 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN B 105 ? ? 70.84 -8.99 2 1 LYS B 116 ? ? -123.53 -166.13 3 1 LYS B 269 ? ? 63.86 156.73 4 1 ASP B 271 ? ? 59.84 -0.90 5 1 GLN B 327 ? ? 68.29 -3.47 6 1 GLU B 328 ? ? -130.29 -37.43 7 1 TYR B 355 ? ? 67.81 151.14 8 1 ILE B 393 ? ? -105.74 -61.68 9 1 ASP B 428 ? ? 70.71 154.01 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9Y61 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 8D81 _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 8D81 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9Y61 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 127545 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Ternary complex NSD2-PWWP1:NSD2-LDD:CRBN:DDB1' _em_entity_assembly.details 'NSD2 PWWP1 domain, CRBN/DDB1 complex, and NSD2-LDD in 1:1:3 ratio' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1,2 # _em_imaging.entry_id 9Y61 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 75000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R0.6/1' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9Y61 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 278 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ;blot time 4 sec blot force 4 ; # _em_experiment.entry_id 9Y61 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9Y61 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 201 ? A MET 1 2 1 Y 1 A ALA 202 ? A ALA 2 3 1 Y 1 A LYS 203 ? A LYS 3 4 1 Y 1 A LYS 204 ? A LYS 4 5 1 Y 1 A GLU 205 ? A GLU 5 6 1 Y 1 A SER 206 ? A SER 6 7 1 Y 1 A CYS 207 ? A CYS 7 8 1 Y 1 A PRO 208 ? A PRO 8 9 1 Y 1 A ASN 209 ? A ASN 9 10 1 Y 1 A THR 210 ? A THR 10 11 1 Y 1 A GLY 211 ? A GLY 11 12 1 Y 1 A ARG 212 ? A ARG 12 13 1 Y 1 A ASP 213 ? A ASP 13 14 1 Y 1 A LYS 214 ? A LYS 14 15 1 Y 1 A ASP 215 ? A ASP 15 16 1 Y 1 A GLU 362 ? A GLU 162 17 1 Y 1 A ALA 363 ? A ALA 163 18 1 Y 1 A GLY 364 ? A GLY 164 19 1 Y 1 A ILE 365 ? A ILE 165 20 1 Y 1 A ALA 366 ? A ALA 166 21 1 Y 1 A ALA 367 ? A ALA 167 22 1 Y 1 A GLU 368 ? A GLU 168 23 1 Y 1 A HIS 369 ? A HIS 169 24 1 Y 1 A HIS 370 ? A HIS 170 25 1 Y 1 A HIS 371 ? A HIS 171 26 1 Y 1 A HIS 372 ? A HIS 172 27 1 Y 1 A HIS 373 ? A HIS 173 28 1 Y 1 A HIS 374 ? A HIS 174 29 1 Y 1 B MET -24 ? B MET 1 30 1 Y 1 B SER -23 ? B SER 2 31 1 Y 1 B TYR -22 ? B TYR 3 32 1 Y 1 B TYR -21 ? B TYR 4 33 1 Y 1 B HIS -20 ? B HIS 5 34 1 Y 1 B HIS -19 ? B HIS 6 35 1 Y 1 B HIS -18 ? B HIS 7 36 1 Y 1 B HIS -17 ? B HIS 8 37 1 Y 1 B HIS -16 ? B HIS 9 38 1 Y 1 B HIS -15 ? B HIS 10 39 1 Y 1 B ASP -14 ? B ASP 11 40 1 Y 1 B TYR -13 ? B TYR 12 41 1 Y 1 B ASP -12 ? B ASP 13 42 1 Y 1 B ILE -11 ? B ILE 14 43 1 Y 1 B PRO -10 ? B PRO 15 44 1 Y 1 B THR -9 ? B THR 16 45 1 Y 1 B THR -8 ? B THR 17 46 1 Y 1 B GLY -7 ? B GLY 18 47 1 Y 1 B LEU -6 ? B LEU 19 48 1 Y 1 B VAL -5 ? B VAL 20 49 1 Y 1 B PRO -4 ? B PRO 21 50 1 Y 1 B ARG -3 ? B ARG 22 51 1 Y 1 B GLY -2 ? B GLY 23 52 1 Y 1 B SER -1 ? B SER 24 53 1 Y 1 B MET 0 ? B MET 25 54 1 Y 1 B MET 1 ? B MET 26 55 1 Y 1 B ALA 2 ? B ALA 27 56 1 Y 1 B GLY 3 ? B GLY 28 57 1 Y 1 B GLU 4 ? B GLU 29 58 1 Y 1 B GLY 5 ? B GLY 30 59 1 Y 1 B ASP 6 ? B ASP 31 60 1 Y 1 B GLN 7 ? B GLN 32 61 1 Y 1 B GLN 8 ? B GLN 33 62 1 Y 1 B ASP 9 ? B ASP 34 63 1 Y 1 B ALA 10 ? B ALA 35 64 1 Y 1 B ALA 11 ? B ALA 36 65 1 Y 1 B HIS 12 ? B HIS 37 66 1 Y 1 B ASN 13 ? B ASN 38 67 1 Y 1 B MET 14 ? B MET 39 68 1 Y 1 B GLY 15 ? B GLY 40 69 1 Y 1 B ASN 16 ? B ASN 41 70 1 Y 1 B HIS 17 ? B HIS 42 71 1 Y 1 B LEU 18 ? B LEU 43 72 1 Y 1 B PRO 19 ? B PRO 44 73 1 Y 1 B LEU 20 ? B LEU 45 74 1 Y 1 B LEU 21 ? B LEU 46 75 1 Y 1 B PRO 22 ? B PRO 47 76 1 Y 1 B ALA 23 ? B ALA 48 77 1 Y 1 B GLU 24 ? B GLU 49 78 1 Y 1 B SER 25 ? B SER 50 79 1 Y 1 B GLU 26 ? B GLU 51 80 1 Y 1 B GLU 27 ? B GLU 52 81 1 Y 1 B GLU 28 ? B GLU 53 82 1 Y 1 B ASP 29 ? B ASP 54 83 1 Y 1 B GLU 30 ? B GLU 55 84 1 Y 1 B MET 31 ? B MET 56 85 1 Y 1 B GLU 32 ? B GLU 57 86 1 Y 1 B VAL 33 ? B VAL 58 87 1 Y 1 B GLU 34 ? B GLU 59 88 1 Y 1 B ASP 35 ? B ASP 60 89 1 Y 1 B GLN 36 ? B GLN 61 90 1 Y 1 B ASP 37 ? B ASP 62 91 1 Y 1 B SER 38 ? B SER 63 92 1 Y 1 B LYS 39 ? B LYS 64 93 1 Y 1 B GLU 40 ? B GLU 65 94 1 Y 1 B ALA 41 ? B ALA 66 95 1 Y 1 B LYS 42 ? B LYS 67 96 1 Y 1 B LYS 43 ? B LYS 68 97 1 Y 1 B PRO 44 ? B PRO 69 98 1 Y 1 B ASN 45 ? B ASN 70 99 1 Y 1 B ILE 46 ? B ILE 71 100 1 Y 1 B ILE 47 ? B ILE 72 101 1 Y 1 B ASN 48 ? B ASN 73 102 1 Y 1 B PHE 49 ? B PHE 74 103 1 Y 1 B ASP 50 ? B ASP 75 104 1 Y 1 B THR 51 ? B THR 76 105 1 Y 1 B SER 52 ? B SER 77 106 1 Y 1 B LEU 53 ? B LEU 78 107 1 Y 1 B PRO 54 ? B PRO 79 108 1 Y 1 B THR 55 ? B THR 80 109 1 Y 1 B SER 56 ? B SER 81 110 1 Y 1 B HIS 57 ? B HIS 82 111 1 Y 1 B THR 58 ? B THR 83 112 1 Y 1 B TYR 59 ? B TYR 84 113 1 Y 1 B LEU 60 ? B LEU 85 114 1 Y 1 B GLY 61 ? B GLY 86 115 1 Y 1 B ALA 62 ? B ALA 87 116 1 Y 1 B ASP 63 ? B ASP 88 117 1 Y 1 B MET 64 ? B MET 89 118 1 Y 1 B GLU 65 ? B GLU 90 119 1 Y 1 B GLU 66 ? B GLU 91 120 1 Y 1 B PHE 67 ? B PHE 92 121 1 Y 1 B HIS 68 ? B HIS 93 122 1 Y 1 B GLY 69 ? B GLY 94 123 1 Y 1 B ARG 70 ? B ARG 95 124 1 Y 1 B THR 71 ? B THR 96 125 1 Y 1 B LEU 72 ? B LEU 97 126 1 Y 1 B HIS 73 ? B HIS 98 127 1 Y 1 B ASP 74 ? B ASP 99 128 1 Y 1 B ASP 75 ? B ASP 100 129 1 Y 1 B ASP 76 ? B ASP 101 130 1 Y 1 B SER 77 ? B SER 102 131 1 Y 1 B CYS 188 ? B CYS 213 132 1 Y 1 B VAL 189 ? B VAL 214 133 1 Y 1 B LEU 190 ? B LEU 215 134 1 Y 1 B PRO 191 ? B PRO 216 135 1 Y 1 B SER 192 ? B SER 217 136 1 Y 1 B THR 193 ? B THR 218 137 1 Y 1 B MET 194 ? B MET 219 138 1 Y 1 B SER 195 ? B SER 220 139 1 Y 1 B ALA 196 ? B ALA 221 140 1 Y 1 B VAL 197 ? B VAL 222 141 1 Y 1 B GLN 198 ? B GLN 223 142 1 Y 1 B LEU 199 ? B LEU 224 143 1 Y 1 B GLU 200 ? B GLU 225 144 1 Y 1 B SER 201 ? B SER 226 145 1 Y 1 B LEU 202 ? B LEU 227 146 1 Y 1 B ASN 203 ? B ASN 228 147 1 Y 1 B LYS 204 ? B LYS 229 148 1 Y 1 B CYS 205 ? B CYS 230 149 1 Y 1 B GLN 206 ? B GLN 231 150 1 Y 1 B ILE 207 ? B ILE 232 151 1 Y 1 B PHE 208 ? B PHE 233 152 1 Y 1 B PRO 209 ? B PRO 234 153 1 Y 1 B SER 210 ? B SER 235 154 1 Y 1 B LYS 211 ? B LYS 236 155 1 Y 1 B PRO 212 ? B PRO 237 156 1 Y 1 B VAL 213 ? B VAL 238 157 1 Y 1 B SER 214 ? B SER 239 158 1 Y 1 B ARG 215 ? B ARG 240 159 1 Y 1 B GLU 216 ? B GLU 241 160 1 Y 1 B ASP 217 ? B ASP 242 161 1 Y 1 B GLN 218 ? B GLN 243 162 1 Y 1 B CYS 219 ? B CYS 244 163 1 Y 1 B SER 220 ? B SER 245 164 1 Y 1 B TYR 221 ? B TYR 246 165 1 Y 1 B LYS 222 ? B LYS 247 166 1 Y 1 B TRP 223 ? B TRP 248 167 1 Y 1 B TRP 224 ? B TRP 249 168 1 Y 1 B GLN 225 ? B GLN 250 169 1 Y 1 B LYS 226 ? B LYS 251 170 1 Y 1 B TYR 227 ? B TYR 252 171 1 Y 1 B GLN 228 ? B GLN 253 172 1 Y 1 B LYS 229 ? B LYS 254 173 1 Y 1 B ARG 230 ? B ARG 255 174 1 Y 1 B LYS 231 ? B LYS 256 175 1 Y 1 B PHE 232 ? B PHE 257 176 1 Y 1 B HIS 233 ? B HIS 258 177 1 Y 1 B CYS 234 ? B CYS 259 178 1 Y 1 B ALA 235 ? B ALA 260 179 1 Y 1 B ASN 236 ? B ASN 261 180 1 Y 1 B LEU 237 ? B LEU 262 181 1 Y 1 B THR 238 ? B THR 263 182 1 Y 1 B SER 239 ? B SER 264 183 1 Y 1 B TRP 240 ? B TRP 265 184 1 Y 1 B PRO 241 ? B PRO 266 185 1 Y 1 B ARG 242 ? B ARG 267 186 1 Y 1 B TRP 243 ? B TRP 268 187 1 Y 1 B LEU 244 ? B LEU 269 188 1 Y 1 B TYR 245 ? B TYR 270 189 1 Y 1 B SER 246 ? B SER 271 190 1 Y 1 B LEU 247 ? B LEU 272 191 1 Y 1 B TYR 248 ? B TYR 273 192 1 Y 1 B ASP 249 ? B ASP 274 193 1 Y 1 B ALA 250 ? B ALA 275 194 1 Y 1 B GLU 251 ? B GLU 276 195 1 Y 1 B THR 252 ? B THR 277 196 1 Y 1 B GLU 430 ? B GLU 455 197 1 Y 1 B ASP 431 ? B ASP 456 198 1 Y 1 B GLU 432 ? B GLU 457 199 1 Y 1 B ILE 433 ? B ILE 458 200 1 Y 1 B SER 434 ? B SER 459 201 1 Y 1 B PRO 435 ? B PRO 460 202 1 Y 1 B ASP 436 ? B ASP 461 203 1 Y 1 B LYS 437 ? B LYS 462 204 1 Y 1 B VAL 438 ? B VAL 463 205 1 Y 1 B ILE 439 ? B ILE 464 206 1 Y 1 B LEU 440 ? B LEU 465 207 1 Y 1 B CYS 441 ? B CYS 466 208 1 Y 1 B LEU 442 ? B LEU 467 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1CSQ N1 N N N 1 A1CSQ N3 N N N 2 A1CSQ C4 C Y N 3 A1CSQ C5 C Y N 4 A1CSQ C6 C Y N 5 A1CSQ C7 C Y N 6 A1CSQ C8 C Y N 7 A1CSQ C10 C Y N 8 A1CSQ C13 C N N 9 A1CSQ C15 C N N 10 A1CSQ C17 C N N 11 A1CSQ C20 C N N 12 A1CSQ C21 C N N 13 A1CSQ C22 C N N 14 A1CSQ C24 C N N 15 A1CSQ C26 C N N 16 A1CSQ C28 C N N 17 A1CSQ C1 C Y N 18 A1CSQ C11 C Y N 19 A1CSQ C12 C Y N 20 A1CSQ C14 C N N 21 A1CSQ C16 C N N 22 A1CSQ C18 C N N 23 A1CSQ C19 C N N 24 A1CSQ C2 C Y N 25 A1CSQ C23 C N N 26 A1CSQ C25 C N N 27 A1CSQ C27 C N N 28 A1CSQ C29 C N N 29 A1CSQ C3 C Y N 30 A1CSQ C30 C N N 31 A1CSQ C31 C N N 32 A1CSQ C32 C N S 33 A1CSQ C33 C N N 34 A1CSQ C34 C N R 35 A1CSQ C35 C N N 36 A1CSQ C36 C N N 37 A1CSQ C37 C N N 38 A1CSQ C38 C N N 39 A1CSQ C39 C N N 40 A1CSQ C9 C Y N 41 A1CSQ F1 F N N 42 A1CSQ N2 N N N 43 A1CSQ N4 N N N 44 A1CSQ N5 N N N 45 A1CSQ N6 N N N 46 A1CSQ O1 O N N 47 A1CSQ O2 O N N 48 A1CSQ O3 O N N 49 A1CSQ O4 O N N 50 A1CSQ O5 O N N 51 A1CSQ CL1 CL N N 52 A1CSQ CL2 CL N N 53 A1CSQ H1 H N N 54 A1CSQ H2 H N N 55 A1CSQ H3 H N N 56 A1CSQ H4 H N N 57 A1CSQ H5 H N N 58 A1CSQ H6 H N N 59 A1CSQ H7 H N N 60 A1CSQ H8 H N N 61 A1CSQ H9 H N N 62 A1CSQ H10 H N N 63 A1CSQ H11 H N N 64 A1CSQ H12 H N N 65 A1CSQ H13 H N N 66 A1CSQ H14 H N N 67 A1CSQ H15 H N N 68 A1CSQ H16 H N N 69 A1CSQ H17 H N N 70 A1CSQ H18 H N N 71 A1CSQ H19 H N N 72 A1CSQ H20 H N N 73 A1CSQ H21 H N N 74 A1CSQ H22 H N N 75 A1CSQ H23 H N N 76 A1CSQ H24 H N N 77 A1CSQ H25 H N N 78 A1CSQ H26 H N N 79 A1CSQ H27 H N N 80 A1CSQ H28 H N N 81 A1CSQ H29 H N N 82 A1CSQ H30 H N N 83 A1CSQ H31 H N N 84 A1CSQ H32 H N N 85 A1CSQ H33 H N N 86 A1CSQ H34 H N N 87 A1CSQ H35 H N N 88 A1CSQ H36 H N N 89 A1CSQ H37 H N N 90 A1CSQ H38 H N N 91 A1CSQ H39 H N N 92 A1CSQ H40 H N N 93 A1CSQ H41 H N N 94 A1CSQ H42 H N N 95 A1CSQ H43 H N N 96 A1CSQ H44 H N N 97 A1CSQ H45 H N N 98 A1CSQ H46 H N N 99 A1CSQ H47 H N N 100 A1CSQ H48 H N N 101 A1CSQ H49 H N N 102 ALA N N N N 103 ALA CA C N S 104 ALA C C N N 105 ALA O O N N 106 ALA CB C N N 107 ALA OXT O N N 108 ALA H H N N 109 ALA H2 H N N 110 ALA HA H N N 111 ALA HB1 H N N 112 ALA HB2 H N N 113 ALA HB3 H N N 114 ALA HXT H N N 115 ARG N N N N 116 ARG CA C N S 117 ARG C C N N 118 ARG O O N N 119 ARG CB C N N 120 ARG CG C N N 121 ARG CD C N N 122 ARG NE N N N 123 ARG CZ C N N 124 ARG NH1 N N N 125 ARG NH2 N N N 126 ARG OXT O N N 127 ARG H H N N 128 ARG H2 H N N 129 ARG HA H N N 130 ARG HB2 H N N 131 ARG HB3 H N N 132 ARG HG2 H N N 133 ARG HG3 H N N 134 ARG HD2 H N N 135 ARG HD3 H N N 136 ARG HE H N N 137 ARG HH11 H N N 138 ARG HH12 H N N 139 ARG HH21 H N N 140 ARG HH22 H N N 141 ARG HXT H N N 142 ASN N N N N 143 ASN CA C N S 144 ASN C C N N 145 ASN O O N N 146 ASN CB C N N 147 ASN CG C N N 148 ASN OD1 O N N 149 ASN ND2 N N N 150 ASN OXT O N N 151 ASN H H N N 152 ASN H2 H N N 153 ASN HA H N N 154 ASN HB2 H N N 155 ASN HB3 H N N 156 ASN HD21 H N N 157 ASN HD22 H N N 158 ASN HXT H N N 159 ASP N N N N 160 ASP CA C N S 161 ASP C C N N 162 ASP O O N N 163 ASP CB C N N 164 ASP CG C N N 165 ASP OD1 O N N 166 ASP OD2 O N N 167 ASP OXT O N N 168 ASP H H N N 169 ASP H2 H N N 170 ASP HA H N N 171 ASP HB2 H N N 172 ASP HB3 H N N 173 ASP HD2 H N N 174 ASP HXT H N N 175 CYS N N N N 176 CYS CA C N R 177 CYS C C N N 178 CYS O O N N 179 CYS CB C N N 180 CYS SG S N N 181 CYS OXT O N N 182 CYS H H N N 183 CYS H2 H N N 184 CYS HA H N N 185 CYS HB2 H N N 186 CYS HB3 H N N 187 CYS HG H N N 188 CYS HXT H N N 189 GLN N N N N 190 GLN CA C N S 191 GLN C C N N 192 GLN O O N N 193 GLN CB C N N 194 GLN CG C N N 195 GLN CD C N N 196 GLN OE1 O N N 197 GLN NE2 N N N 198 GLN OXT O N N 199 GLN H H N N 200 GLN H2 H N N 201 GLN HA H N N 202 GLN HB2 H N N 203 GLN HB3 H N N 204 GLN HG2 H N N 205 GLN HG3 H N N 206 GLN HE21 H N N 207 GLN HE22 H N N 208 GLN HXT H N N 209 GLU N N N N 210 GLU CA C N S 211 GLU C C N N 212 GLU O O N N 213 GLU CB C N N 214 GLU CG C N N 215 GLU CD C N N 216 GLU OE1 O N N 217 GLU OE2 O N N 218 GLU OXT O N N 219 GLU H H N N 220 GLU H2 H N N 221 GLU HA H N N 222 GLU HB2 H N N 223 GLU HB3 H N N 224 GLU HG2 H N N 225 GLU HG3 H N N 226 GLU HE2 H N N 227 GLU HXT H N N 228 GLY N N N N 229 GLY CA C N N 230 GLY C C N N 231 GLY O O N N 232 GLY OXT O N N 233 GLY H H N N 234 GLY H2 H N N 235 GLY HA2 H N N 236 GLY HA3 H N N 237 GLY HXT H N N 238 HIS N N N N 239 HIS CA C N S 240 HIS C C N N 241 HIS O O N N 242 HIS CB C N N 243 HIS CG C Y N 244 HIS ND1 N Y N 245 HIS CD2 C Y N 246 HIS CE1 C Y N 247 HIS NE2 N Y N 248 HIS OXT O N N 249 HIS H H N N 250 HIS H2 H N N 251 HIS HA H N N 252 HIS HB2 H N N 253 HIS HB3 H N N 254 HIS HD1 H N N 255 HIS HD2 H N N 256 HIS HE1 H N N 257 HIS HE2 H N N 258 HIS HXT H N N 259 ILE N N N N 260 ILE CA C N S 261 ILE C C N N 262 ILE O O N N 263 ILE CB C N S 264 ILE CG1 C N N 265 ILE CG2 C N N 266 ILE CD1 C N N 267 ILE OXT O N N 268 ILE H H N N 269 ILE H2 H N N 270 ILE HA H N N 271 ILE HB H N N 272 ILE HG12 H N N 273 ILE HG13 H N N 274 ILE HG21 H N N 275 ILE HG22 H N N 276 ILE HG23 H N N 277 ILE HD11 H N N 278 ILE HD12 H N N 279 ILE HD13 H N N 280 ILE HXT H N N 281 LEU N N N N 282 LEU CA C N S 283 LEU C C N N 284 LEU O O N N 285 LEU CB C N N 286 LEU CG C N N 287 LEU CD1 C N N 288 LEU CD2 C N N 289 LEU OXT O N N 290 LEU H H N N 291 LEU H2 H N N 292 LEU HA H N N 293 LEU HB2 H N N 294 LEU HB3 H N N 295 LEU HG H N N 296 LEU HD11 H N N 297 LEU HD12 H N N 298 LEU HD13 H N N 299 LEU HD21 H N N 300 LEU HD22 H N N 301 LEU HD23 H N N 302 LEU HXT H N N 303 LYS N N N N 304 LYS CA C N S 305 LYS C C N N 306 LYS O O N N 307 LYS CB C N N 308 LYS CG C N N 309 LYS CD C N N 310 LYS CE C N N 311 LYS NZ N N N 312 LYS OXT O N N 313 LYS H H N N 314 LYS H2 H N N 315 LYS HA H N N 316 LYS HB2 H N N 317 LYS HB3 H N N 318 LYS HG2 H N N 319 LYS HG3 H N N 320 LYS HD2 H N N 321 LYS HD3 H N N 322 LYS HE2 H N N 323 LYS HE3 H N N 324 LYS HZ1 H N N 325 LYS HZ2 H N N 326 LYS HZ3 H N N 327 LYS HXT H N N 328 MET N N N N 329 MET CA C N S 330 MET C C N N 331 MET O O N N 332 MET CB C N N 333 MET CG C N N 334 MET SD S N N 335 MET CE C N N 336 MET OXT O N N 337 MET H H N N 338 MET H2 H N N 339 MET HA H N N 340 MET HB2 H N N 341 MET HB3 H N N 342 MET HG2 H N N 343 MET HG3 H N N 344 MET HE1 H N N 345 MET HE2 H N N 346 MET HE3 H N N 347 MET HXT H N N 348 PHE N N N N 349 PHE CA C N S 350 PHE C C N N 351 PHE O O N N 352 PHE CB C N N 353 PHE CG C Y N 354 PHE CD1 C Y N 355 PHE CD2 C Y N 356 PHE CE1 C Y N 357 PHE CE2 C Y N 358 PHE CZ C Y N 359 PHE OXT O N N 360 PHE H H N N 361 PHE H2 H N N 362 PHE HA H N N 363 PHE HB2 H N N 364 PHE HB3 H N N 365 PHE HD1 H N N 366 PHE HD2 H N N 367 PHE HE1 H N N 368 PHE HE2 H N N 369 PHE HZ H N N 370 PHE HXT H N N 371 PRO N N N N 372 PRO CA C N S 373 PRO C C N N 374 PRO O O N N 375 PRO CB C N N 376 PRO CG C N N 377 PRO CD C N N 378 PRO OXT O N N 379 PRO H H N N 380 PRO HA H N N 381 PRO HB2 H N N 382 PRO HB3 H N N 383 PRO HG2 H N N 384 PRO HG3 H N N 385 PRO HD2 H N N 386 PRO HD3 H N N 387 PRO HXT H N N 388 SER N N N N 389 SER CA C N S 390 SER C C N N 391 SER O O N N 392 SER CB C N N 393 SER OG O N N 394 SER OXT O N N 395 SER H H N N 396 SER H2 H N N 397 SER HA H N N 398 SER HB2 H N N 399 SER HB3 H N N 400 SER HG H N N 401 SER HXT H N N 402 THR N N N N 403 THR CA C N S 404 THR C C N N 405 THR O O N N 406 THR CB C N R 407 THR OG1 O N N 408 THR CG2 C N N 409 THR OXT O N N 410 THR H H N N 411 THR H2 H N N 412 THR HA H N N 413 THR HB H N N 414 THR HG1 H N N 415 THR HG21 H N N 416 THR HG22 H N N 417 THR HG23 H N N 418 THR HXT H N N 419 TRP N N N N 420 TRP CA C N S 421 TRP C C N N 422 TRP O O N N 423 TRP CB C N N 424 TRP CG C Y N 425 TRP CD1 C Y N 426 TRP CD2 C Y N 427 TRP NE1 N Y N 428 TRP CE2 C Y N 429 TRP CE3 C Y N 430 TRP CZ2 C Y N 431 TRP CZ3 C Y N 432 TRP CH2 C Y N 433 TRP OXT O N N 434 TRP H H N N 435 TRP H2 H N N 436 TRP HA H N N 437 TRP HB2 H N N 438 TRP HB3 H N N 439 TRP HD1 H N N 440 TRP HE1 H N N 441 TRP HE3 H N N 442 TRP HZ2 H N N 443 TRP HZ3 H N N 444 TRP HH2 H N N 445 TRP HXT H N N 446 TYR N N N N 447 TYR CA C N S 448 TYR C C N N 449 TYR O O N N 450 TYR CB C N N 451 TYR CG C Y N 452 TYR CD1 C Y N 453 TYR CD2 C Y N 454 TYR CE1 C Y N 455 TYR CE2 C Y N 456 TYR CZ C Y N 457 TYR OH O N N 458 TYR OXT O N N 459 TYR H H N N 460 TYR H2 H N N 461 TYR HA H N N 462 TYR HB2 H N N 463 TYR HB3 H N N 464 TYR HD1 H N N 465 TYR HD2 H N N 466 TYR HE1 H N N 467 TYR HE2 H N N 468 TYR HH H N N 469 TYR HXT H N N 470 VAL N N N N 471 VAL CA C N S 472 VAL C C N N 473 VAL O O N N 474 VAL CB C N N 475 VAL CG1 C N N 476 VAL CG2 C N N 477 VAL OXT O N N 478 VAL H H N N 479 VAL H2 H N N 480 VAL HA H N N 481 VAL HB H N N 482 VAL HG11 H N N 483 VAL HG12 H N N 484 VAL HG13 H N N 485 VAL HG21 H N N 486 VAL HG22 H N N 487 VAL HG23 H N N 488 VAL HXT H N N 489 ZN ZN ZN N N 490 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1CSQ CL2 C12 sing N N 1 A1CSQ F1 C10 sing N N 2 A1CSQ C12 C10 doub Y N 3 A1CSQ C12 C5 sing Y N 4 A1CSQ C10 C11 sing Y N 5 A1CSQ C5 C7 doub Y N 6 A1CSQ O5 C18 sing N N 7 A1CSQ O5 C32 sing N N 8 A1CSQ C11 CL1 sing N N 9 A1CSQ C11 C4 doub Y N 10 A1CSQ C18 C14 sing N N 11 A1CSQ C7 C4 sing Y N 12 A1CSQ C7 C32 sing N N 13 A1CSQ C32 C34 sing N N 14 A1CSQ C14 O2 doub N N 15 A1CSQ C14 N2 sing N N 16 A1CSQ C34 N2 sing N N 17 A1CSQ C34 C38 sing N N 18 A1CSQ C38 C39 sing N N 19 A1CSQ C39 N6 sing N N 20 A1CSQ N6 C30 sing N N 21 A1CSQ N6 C31 sing N N 22 A1CSQ C30 C28 sing N N 23 A1CSQ C28 N5 sing N N 24 A1CSQ C31 C29 sing N N 25 A1CSQ C29 N5 sing N N 26 A1CSQ N5 C37 sing N N 27 A1CSQ C37 C33 sing N N 28 A1CSQ C36 C8 sing N N 29 A1CSQ C17 C13 sing N N 30 A1CSQ C17 C25 sing N N 31 A1CSQ C33 C19 sing N N 32 A1CSQ C33 C20 sing N N 33 A1CSQ C8 C2 doub Y N 34 A1CSQ C8 C9 sing Y N 35 A1CSQ C19 C21 sing N N 36 A1CSQ O1 C13 doub N N 37 A1CSQ C20 C22 sing N N 38 A1CSQ C2 C1 sing Y N 39 A1CSQ C13 N1 sing N N 40 A1CSQ C25 N3 sing N N 41 A1CSQ N3 C9 sing N N 42 A1CSQ N3 C15 sing N N 43 A1CSQ C24 C27 sing N N 44 A1CSQ C24 C35 sing N N 45 A1CSQ C9 C3 doub Y N 46 A1CSQ N1 C15 sing N N 47 A1CSQ C27 N4 sing N N 48 A1CSQ C1 C6 doub Y N 49 A1CSQ C15 O3 doub N N 50 A1CSQ C21 C35 sing N N 51 A1CSQ C22 C35 sing N N 52 A1CSQ C35 C23 sing N N 53 A1CSQ C3 C6 sing Y N 54 A1CSQ C6 C16 sing N N 55 A1CSQ N4 C16 sing N N 56 A1CSQ N4 C26 sing N N 57 A1CSQ C16 O4 doub N N 58 A1CSQ C23 C26 sing N N 59 A1CSQ N1 H1 sing N N 60 A1CSQ C4 H2 sing N N 61 A1CSQ C5 H3 sing N N 62 A1CSQ C17 H4 sing N N 63 A1CSQ C17 H5 sing N N 64 A1CSQ C20 H6 sing N N 65 A1CSQ C20 H7 sing N N 66 A1CSQ C21 H8 sing N N 67 A1CSQ C21 H9 sing N N 68 A1CSQ C22 H10 sing N N 69 A1CSQ C22 H11 sing N N 70 A1CSQ C24 H12 sing N N 71 A1CSQ C24 H13 sing N N 72 A1CSQ C26 H14 sing N N 73 A1CSQ C26 H15 sing N N 74 A1CSQ C28 H16 sing N N 75 A1CSQ C28 H17 sing N N 76 A1CSQ C1 H18 sing N N 77 A1CSQ C18 H19 sing N N 78 A1CSQ C18 H20 sing N N 79 A1CSQ C19 H21 sing N N 80 A1CSQ C19 H22 sing N N 81 A1CSQ C2 H23 sing N N 82 A1CSQ C23 H24 sing N N 83 A1CSQ C23 H25 sing N N 84 A1CSQ C25 H26 sing N N 85 A1CSQ C25 H27 sing N N 86 A1CSQ C27 H28 sing N N 87 A1CSQ C27 H29 sing N N 88 A1CSQ C29 H30 sing N N 89 A1CSQ C29 H31 sing N N 90 A1CSQ C3 H32 sing N N 91 A1CSQ C30 H33 sing N N 92 A1CSQ C30 H34 sing N N 93 A1CSQ C31 H35 sing N N 94 A1CSQ C31 H36 sing N N 95 A1CSQ C32 H37 sing N N 96 A1CSQ C33 H38 sing N N 97 A1CSQ C34 H39 sing N N 98 A1CSQ C36 H40 sing N N 99 A1CSQ C36 H41 sing N N 100 A1CSQ C36 H42 sing N N 101 A1CSQ C37 H43 sing N N 102 A1CSQ C37 H44 sing N N 103 A1CSQ C38 H45 sing N N 104 A1CSQ C38 H46 sing N N 105 A1CSQ C39 H47 sing N N 106 A1CSQ C39 H48 sing N N 107 A1CSQ N2 H49 sing N N 108 ALA N CA sing N N 109 ALA N H sing N N 110 ALA N H2 sing N N 111 ALA CA C sing N N 112 ALA CA CB sing N N 113 ALA CA HA sing N N 114 ALA C O doub N N 115 ALA C OXT sing N N 116 ALA CB HB1 sing N N 117 ALA CB HB2 sing N N 118 ALA CB HB3 sing N N 119 ALA OXT HXT sing N N 120 ARG N CA sing N N 121 ARG N H sing N N 122 ARG N H2 sing N N 123 ARG CA C sing N N 124 ARG CA CB sing N N 125 ARG CA HA sing N N 126 ARG C O doub N N 127 ARG C OXT sing N N 128 ARG CB CG sing N N 129 ARG CB HB2 sing N N 130 ARG CB HB3 sing N N 131 ARG CG CD sing N N 132 ARG CG HG2 sing N N 133 ARG CG HG3 sing N N 134 ARG CD NE sing N N 135 ARG CD HD2 sing N N 136 ARG CD HD3 sing N N 137 ARG NE CZ sing N N 138 ARG NE HE sing N N 139 ARG CZ NH1 sing N N 140 ARG CZ NH2 doub N N 141 ARG NH1 HH11 sing N N 142 ARG NH1 HH12 sing N N 143 ARG NH2 HH21 sing N N 144 ARG NH2 HH22 sing N N 145 ARG OXT HXT sing N N 146 ASN N CA sing N N 147 ASN N H sing N N 148 ASN N H2 sing N N 149 ASN CA C sing N N 150 ASN CA CB sing N N 151 ASN CA HA sing N N 152 ASN C O doub N N 153 ASN C OXT sing N N 154 ASN CB CG sing N N 155 ASN CB HB2 sing N N 156 ASN CB HB3 sing N N 157 ASN CG OD1 doub N N 158 ASN CG ND2 sing N N 159 ASN ND2 HD21 sing N N 160 ASN ND2 HD22 sing N N 161 ASN OXT HXT sing N N 162 ASP N CA sing N N 163 ASP N H sing N N 164 ASP N H2 sing N N 165 ASP CA C sing N N 166 ASP CA CB sing N N 167 ASP CA HA sing N N 168 ASP C O doub N N 169 ASP C OXT sing N N 170 ASP CB CG sing N N 171 ASP CB HB2 sing N N 172 ASP CB HB3 sing N N 173 ASP CG OD1 doub N N 174 ASP CG OD2 sing N N 175 ASP OD2 HD2 sing N N 176 ASP OXT HXT sing N N 177 CYS N CA sing N N 178 CYS N H sing N N 179 CYS N H2 sing N N 180 CYS CA C sing N N 181 CYS CA CB sing N N 182 CYS CA HA sing N N 183 CYS C O doub N N 184 CYS C OXT sing N N 185 CYS CB SG sing N N 186 CYS CB HB2 sing N N 187 CYS CB HB3 sing N N 188 CYS SG HG sing N N 189 CYS OXT HXT sing N N 190 GLN N CA sing N N 191 GLN N H sing N N 192 GLN N H2 sing N N 193 GLN CA C sing N N 194 GLN CA CB sing N N 195 GLN CA HA sing N N 196 GLN C O doub N N 197 GLN C OXT sing N N 198 GLN CB CG sing N N 199 GLN CB HB2 sing N N 200 GLN CB HB3 sing N N 201 GLN CG CD sing N N 202 GLN CG HG2 sing N N 203 GLN CG HG3 sing N N 204 GLN CD OE1 doub N N 205 GLN CD NE2 sing N N 206 GLN NE2 HE21 sing N N 207 GLN NE2 HE22 sing N N 208 GLN OXT HXT sing N N 209 GLU N CA sing N N 210 GLU N H sing N N 211 GLU N H2 sing N N 212 GLU CA C sing N N 213 GLU CA CB sing N N 214 GLU CA HA sing N N 215 GLU C O doub N N 216 GLU C OXT sing N N 217 GLU CB CG sing N N 218 GLU CB HB2 sing N N 219 GLU CB HB3 sing N N 220 GLU CG CD sing N N 221 GLU CG HG2 sing N N 222 GLU CG HG3 sing N N 223 GLU CD OE1 doub N N 224 GLU CD OE2 sing N N 225 GLU OE2 HE2 sing N N 226 GLU OXT HXT sing N N 227 GLY N CA sing N N 228 GLY N H sing N N 229 GLY N H2 sing N N 230 GLY CA C sing N N 231 GLY CA HA2 sing N N 232 GLY CA HA3 sing N N 233 GLY C O doub N N 234 GLY C OXT sing N N 235 GLY OXT HXT sing N N 236 HIS N CA sing N N 237 HIS N H sing N N 238 HIS N H2 sing N N 239 HIS CA C sing N N 240 HIS CA CB sing N N 241 HIS CA HA sing N N 242 HIS C O doub N N 243 HIS C OXT sing N N 244 HIS CB CG sing N N 245 HIS CB HB2 sing N N 246 HIS CB HB3 sing N N 247 HIS CG ND1 sing Y N 248 HIS CG CD2 doub Y N 249 HIS ND1 CE1 doub Y N 250 HIS ND1 HD1 sing N N 251 HIS CD2 NE2 sing Y N 252 HIS CD2 HD2 sing N N 253 HIS CE1 NE2 sing Y N 254 HIS CE1 HE1 sing N N 255 HIS NE2 HE2 sing N N 256 HIS OXT HXT sing N N 257 ILE N CA sing N N 258 ILE N H sing N N 259 ILE N H2 sing N N 260 ILE CA C sing N N 261 ILE CA CB sing N N 262 ILE CA HA sing N N 263 ILE C O doub N N 264 ILE C OXT sing N N 265 ILE CB CG1 sing N N 266 ILE CB CG2 sing N N 267 ILE CB HB sing N N 268 ILE CG1 CD1 sing N N 269 ILE CG1 HG12 sing N N 270 ILE CG1 HG13 sing N N 271 ILE CG2 HG21 sing N N 272 ILE CG2 HG22 sing N N 273 ILE CG2 HG23 sing N N 274 ILE CD1 HD11 sing N N 275 ILE CD1 HD12 sing N N 276 ILE CD1 HD13 sing N N 277 ILE OXT HXT sing N N 278 LEU N CA sing N N 279 LEU N H sing N N 280 LEU N H2 sing N N 281 LEU CA C sing N N 282 LEU CA CB sing N N 283 LEU CA HA sing N N 284 LEU C O doub N N 285 LEU C OXT sing N N 286 LEU CB CG sing N N 287 LEU CB HB2 sing N N 288 LEU CB HB3 sing N N 289 LEU CG CD1 sing N N 290 LEU CG CD2 sing N N 291 LEU CG HG sing N N 292 LEU CD1 HD11 sing N N 293 LEU CD1 HD12 sing N N 294 LEU CD1 HD13 sing N N 295 LEU CD2 HD21 sing N N 296 LEU CD2 HD22 sing N N 297 LEU CD2 HD23 sing N N 298 LEU OXT HXT sing N N 299 LYS N CA sing N N 300 LYS N H sing N N 301 LYS N H2 sing N N 302 LYS CA C sing N N 303 LYS CA CB sing N N 304 LYS CA HA sing N N 305 LYS C O doub N N 306 LYS C OXT sing N N 307 LYS CB CG sing N N 308 LYS CB HB2 sing N N 309 LYS CB HB3 sing N N 310 LYS CG CD sing N N 311 LYS CG HG2 sing N N 312 LYS CG HG3 sing N N 313 LYS CD CE sing N N 314 LYS CD HD2 sing N N 315 LYS CD HD3 sing N N 316 LYS CE NZ sing N N 317 LYS CE HE2 sing N N 318 LYS CE HE3 sing N N 319 LYS NZ HZ1 sing N N 320 LYS NZ HZ2 sing N N 321 LYS NZ HZ3 sing N N 322 LYS OXT HXT sing N N 323 MET N CA sing N N 324 MET N H sing N N 325 MET N H2 sing N N 326 MET CA C sing N N 327 MET CA CB sing N N 328 MET CA HA sing N N 329 MET C O doub N N 330 MET C OXT sing N N 331 MET CB CG sing N N 332 MET CB HB2 sing N N 333 MET CB HB3 sing N N 334 MET CG SD sing N N 335 MET CG HG2 sing N N 336 MET CG HG3 sing N N 337 MET SD CE sing N N 338 MET CE HE1 sing N N 339 MET CE HE2 sing N N 340 MET CE HE3 sing N N 341 MET OXT HXT sing N N 342 PHE N CA sing N N 343 PHE N H sing N N 344 PHE N H2 sing N N 345 PHE CA C sing N N 346 PHE CA CB sing N N 347 PHE CA HA sing N N 348 PHE C O doub N N 349 PHE C OXT sing N N 350 PHE CB CG sing N N 351 PHE CB HB2 sing N N 352 PHE CB HB3 sing N N 353 PHE CG CD1 doub Y N 354 PHE CG CD2 sing Y N 355 PHE CD1 CE1 sing Y N 356 PHE CD1 HD1 sing N N 357 PHE CD2 CE2 doub Y N 358 PHE CD2 HD2 sing N N 359 PHE CE1 CZ doub Y N 360 PHE CE1 HE1 sing N N 361 PHE CE2 CZ sing Y N 362 PHE CE2 HE2 sing N N 363 PHE CZ HZ sing N N 364 PHE OXT HXT sing N N 365 PRO N CA sing N N 366 PRO N CD sing N N 367 PRO N H sing N N 368 PRO CA C sing N N 369 PRO CA CB sing N N 370 PRO CA HA sing N N 371 PRO C O doub N N 372 PRO C OXT sing N N 373 PRO CB CG sing N N 374 PRO CB HB2 sing N N 375 PRO CB HB3 sing N N 376 PRO CG CD sing N N 377 PRO CG HG2 sing N N 378 PRO CG HG3 sing N N 379 PRO CD HD2 sing N N 380 PRO CD HD3 sing N N 381 PRO OXT HXT sing N N 382 SER N CA sing N N 383 SER N H sing N N 384 SER N H2 sing N N 385 SER CA C sing N N 386 SER CA CB sing N N 387 SER CA HA sing N N 388 SER C O doub N N 389 SER C OXT sing N N 390 SER CB OG sing N N 391 SER CB HB2 sing N N 392 SER CB HB3 sing N N 393 SER OG HG sing N N 394 SER OXT HXT sing N N 395 THR N CA sing N N 396 THR N H sing N N 397 THR N H2 sing N N 398 THR CA C sing N N 399 THR CA CB sing N N 400 THR CA HA sing N N 401 THR C O doub N N 402 THR C OXT sing N N 403 THR CB OG1 sing N N 404 THR CB CG2 sing N N 405 THR CB HB sing N N 406 THR OG1 HG1 sing N N 407 THR CG2 HG21 sing N N 408 THR CG2 HG22 sing N N 409 THR CG2 HG23 sing N N 410 THR OXT HXT sing N N 411 TRP N CA sing N N 412 TRP N H sing N N 413 TRP N H2 sing N N 414 TRP CA C sing N N 415 TRP CA CB sing N N 416 TRP CA HA sing N N 417 TRP C O doub N N 418 TRP C OXT sing N N 419 TRP CB CG sing N N 420 TRP CB HB2 sing N N 421 TRP CB HB3 sing N N 422 TRP CG CD1 doub Y N 423 TRP CG CD2 sing Y N 424 TRP CD1 NE1 sing Y N 425 TRP CD1 HD1 sing N N 426 TRP CD2 CE2 doub Y N 427 TRP CD2 CE3 sing Y N 428 TRP NE1 CE2 sing Y N 429 TRP NE1 HE1 sing N N 430 TRP CE2 CZ2 sing Y N 431 TRP CE3 CZ3 doub Y N 432 TRP CE3 HE3 sing N N 433 TRP CZ2 CH2 doub Y N 434 TRP CZ2 HZ2 sing N N 435 TRP CZ3 CH2 sing Y N 436 TRP CZ3 HZ3 sing N N 437 TRP CH2 HH2 sing N N 438 TRP OXT HXT sing N N 439 TYR N CA sing N N 440 TYR N H sing N N 441 TYR N H2 sing N N 442 TYR CA C sing N N 443 TYR CA CB sing N N 444 TYR CA HA sing N N 445 TYR C O doub N N 446 TYR C OXT sing N N 447 TYR CB CG sing N N 448 TYR CB HB2 sing N N 449 TYR CB HB3 sing N N 450 TYR CG CD1 doub Y N 451 TYR CG CD2 sing Y N 452 TYR CD1 CE1 sing Y N 453 TYR CD1 HD1 sing N N 454 TYR CD2 CE2 doub Y N 455 TYR CD2 HD2 sing N N 456 TYR CE1 CZ doub Y N 457 TYR CE1 HE1 sing N N 458 TYR CE2 CZ sing Y N 459 TYR CE2 HE2 sing N N 460 TYR CZ OH sing N N 461 TYR OH HH sing N N 462 TYR OXT HXT sing N N 463 VAL N CA sing N N 464 VAL N H sing N N 465 VAL N H2 sing N N 466 VAL CA C sing N N 467 VAL CA CB sing N N 468 VAL CA HA sing N N 469 VAL C O doub N N 470 VAL C OXT sing N N 471 VAL CB CG1 sing N N 472 VAL CB CG2 sing N N 473 VAL CB HB sing N N 474 VAL CG1 HG11 sing N N 475 VAL CG1 HG12 sing N N 476 VAL CG1 HG13 sing N N 477 VAL CG2 HG21 sing N N 478 VAL CG2 HG22 sing N N 479 VAL CG2 HG23 sing N N 480 VAL OXT HXT sing N N 481 # _em_admin.current_status REL _em_admin.deposition_date 2025-09-06 _em_admin.deposition_site RCSB _em_admin.entry_id 9Y61 _em_admin.last_update 2026-07-15 _em_admin.map_release_date 2026-07-15 _em_admin.title 'Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 10 mM ? 1 '(2-(4-(2-hydroxyethyl)piperazin-1-yl)ethanesulfonic acid)' 1 240 mM NaCl 2 'sodium chloride' 1 3 mM ? 3 'tris(2-carboxyethyl)phosphine' 1 0.5 % ? 4 'Dimethyl sulfoxide' 1 0.001 % ? 5 'Lauryl Maltose Neopentyl Glycol' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.166 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 3.49 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 33.85 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 14049 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 14824032 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? cryoSPARC ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? # _em_specimen.concentration 3.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8D81 # _atom_sites.entry_id 9Y61 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL F N O S ZN # loop_ #