HEADER BLOOD CLOTTING 17-SEP-25 9YBH TITLE ANTI HPA-1A FAB M-204 AND INTEGRIN BETA 3 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB M204 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: FAB M204 LIGHT CHAIN; COMPND 6 CHAIN: L; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: INTEGRIN BETA3 PSI AND EGF1 DOMAIN; COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR FLAG-MCHERRY-MCS- SOURCE 14 PCDNA3.1; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 2021190 KEYWDS ANTIBODY, FNAIT, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,J.Q.ZHU REVDAT 1 22-JUL-26 9YBH 0 JRNL AUTH H.ZHANG,J.Q.ZHU JRNL TITL STRUCTURAL BASIS OF FNAIT CAUSED BY HPA-1A ALLOIMMUNIZATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.9800 - 5.3400 1.00 2925 133 0.2103 0.2649 REMARK 3 2 5.3400 - 4.2400 1.00 2758 137 0.1491 0.1791 REMARK 3 3 4.2400 - 3.7000 1.00 2712 145 0.1637 0.2092 REMARK 3 4 3.7000 - 3.3700 1.00 2696 150 0.1853 0.2195 REMARK 3 5 3.3700 - 3.1200 1.00 2686 142 0.2077 0.2336 REMARK 3 6 3.1200 - 2.9400 1.00 2676 141 0.2230 0.2872 REMARK 3 7 2.9400 - 2.7900 1.00 2657 152 0.2166 0.2440 REMARK 3 8 2.7900 - 2.6700 1.00 2652 153 0.2144 0.2576 REMARK 3 9 2.6700 - 2.5700 1.00 2649 138 0.2398 0.2697 REMARK 3 10 2.5700 - 2.4800 1.00 2624 144 0.2314 0.2973 REMARK 3 11 2.4800 - 2.4000 1.00 2680 125 0.2372 0.2887 REMARK 3 12 2.4000 - 2.3300 1.00 2666 142 0.2353 0.2874 REMARK 3 13 2.3300 - 2.2700 1.00 2599 153 0.2344 0.3045 REMARK 3 14 2.2700 - 2.2200 1.00 2640 135 0.2378 0.2931 REMARK 3 15 2.2200 - 2.1700 1.00 2670 109 0.2424 0.3109 REMARK 3 16 2.1700 - 2.1200 1.00 2636 133 0.2390 0.3011 REMARK 3 17 2.1200 - 2.0800 1.00 2624 143 0.2729 0.2971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.569 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4129 REMARK 3 ANGLE : 0.923 5615 REMARK 3 CHIRALITY : 0.056 630 REMARK 3 PLANARITY : 0.008 725 REMARK 3 DIHEDRAL : 16.649 1508 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1000300184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47925 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 110.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4, SODIUM ACETATE, PEG 4000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.19300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.37250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 110.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.19300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.37250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 26.19300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -33.37250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 133 REMARK 465 LYS H 134 REMARK 465 SER H 135 REMARK 465 THR H 136 REMARK 465 SER H 137 REMARK 465 GLY H 138 REMARK 465 LYS H 219 REMARK 465 SER H 220 REMARK 465 CYS H 221 REMARK 465 ASP H 222 REMARK 465 LYS H 223 REMARK 465 THR H 224 REMARK 465 CYS L 220 REMARK 465 VAL A 426 REMARK 465 GLY A 427 REMARK 465 GLY A 428 REMARK 465 SER A 429 REMARK 465 GLY A 430 REMARK 465 GLY A 431 REMARK 465 SER A 432 REMARK 465 GLY A 433 REMARK 465 GLU A 476 REMARK 465 VAL A 477 REMARK 465 LEU A 478 REMARK 465 PHE A 479 REMARK 465 GLN A 480 REMARK 465 GLY A 481 REMARK 465 PRO A 482 REMARK 465 GLY A 483 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 8 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 474 O HOH L 481 1.71 REMARK 500 O HOH H 416 O HOH H 484 1.74 REMARK 500 O HOH H 528 O HOH H 596 1.77 REMARK 500 OE1 GLU L 61 O HOH L 301 1.83 REMARK 500 O HOH H 436 O HOH L 438 1.85 REMARK 500 O HOH H 555 O HOH H 567 1.91 REMARK 500 OE2 GLU L 17 O HOH L 302 1.93 REMARK 500 O HOH H 531 O HOH L 454 1.94 REMARK 500 O HOH H 432 O HOH H 538 1.97 REMARK 500 O HOH H 562 O HOH H 563 1.99 REMARK 500 N SER A 11 O HOH A 501 2.00 REMARK 500 O ASN H 73 O HOH H 401 2.01 REMARK 500 O HOH L 355 O HOH L 427 2.03 REMARK 500 O PRO H 41 O HOH H 402 2.03 REMARK 500 O HOH L 453 O HOH L 458 2.03 REMARK 500 O HOH L 383 O HOH L 481 2.04 REMARK 500 O HOH L 450 O HOH L 488 2.05 REMARK 500 O HOH H 487 O HOH H 578 2.05 REMARK 500 O HOH L 437 O HOH L 483 2.05 REMARK 500 NE2 GLN L 27 O HOH L 303 2.05 REMARK 500 O HOH H 467 O HOH H 499 2.07 REMARK 500 O HOH H 469 O HOH H 554 2.07 REMARK 500 OG SER H 132 O HOH H 403 2.08 REMARK 500 O HOH H 567 O HOH H 601 2.09 REMARK 500 O SER A 11 O HOH A 502 2.10 REMARK 500 O HOH H 601 O HOH H 606 2.11 REMARK 500 O HOH L 412 O HOH L 417 2.11 REMARK 500 O HOH L 449 O HOH L 451 2.14 REMARK 500 O HOH H 555 O HOH H 601 2.14 REMARK 500 O ASN H 73 O HOH H 404 2.14 REMARK 500 O HOH H 464 O HOH H 560 2.14 REMARK 500 O3 NAG H 301 O HOH H 405 2.16 REMARK 500 OD2 ASP A 47 O HOH A 503 2.18 REMARK 500 O HOH H 464 O HOH H 524 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 578 O HOH L 406 3445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 74 -55.19 77.40 REMARK 500 ASP H 149 64.81 70.26 REMARK 500 THR H 165 -30.58 -131.10 REMARK 500 SER L 35 19.66 54.85 REMARK 500 ALA L 57 -33.92 68.06 REMARK 500 ALA L 90 169.12 178.90 REMARK 500 ASN L 144 70.07 60.11 REMARK 500 THR A 6 30.63 -85.06 REMARK 500 THR A 7 -53.61 -140.46 REMARK 500 SER A 20 147.34 -172.22 REMARK 500 CYS A 435 70.30 60.26 REMARK 500 ASN A 449 -134.46 63.59 REMARK 500 ASN A 450 44.49 -90.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 606 DISTANCE = 5.92 ANGSTROMS DBREF 9YBH H 1 224 PDB 9YBH 9YBH 1 224 DBREF 9YBH L 1 220 PDB 9YBH 9YBH 1 220 DBREF 9YBH A 1 483 PDB 9YBH 9YBH 1 483 SEQRES 1 H 224 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 224 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 224 TYR THR PHE THR GLY TYR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO GLY GLN GLY LEU GLU TRP VAL GLY TRP ILE ASP SEQRES 5 H 224 PRO ASN SER GLY GLY THR ILE TYR THR GLN ARG PHE GLN SEQRES 6 H 224 GLY ARG VAL THR MET THR ARG ASN THR SER ILE SER THR SEQRES 7 H 224 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 224 ALA VAL TYR PHE CYS ALA ARG VAL ARG PRO ARG ARG PRO SEQRES 9 H 224 LEU ASP SER TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 224 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 224 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 224 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 224 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 224 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 224 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 224 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 224 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 18 H 224 ASP LYS THR SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR GLY SER ASN SER LYS SER TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS VAL SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA LEU SEQRES 8 L 220 TYR TYR CYS LEU GLN TYR TYR THR THR SER TYR SER PHE SEQRES 9 L 220 GLY GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 115 GLY PRO ASN ILE CYS THR THR ARG GLY VAL SER SER CYS SEQRES 2 A 115 GLN GLN CYS LEU ALA VAL SER PRO MET CYS ALA TRP CYS SEQRES 3 A 115 SER ASP GLU ALA LEU PRO LEU GLY SER PRO ARG CYS ASP SEQRES 4 A 115 LEU LYS GLU ASN LEU LEU LYS ASP ASN CYS ALA PRO GLU SEQRES 5 A 115 SER ILE GLU PHE PRO VAL GLY GLY SER GLY GLY SER GLY SEQRES 6 A 115 ASP CYS ALA CYS GLN ALA GLN ALA GLU PRO ASN SER HIS SEQRES 7 A 115 ARG CYS ASN ASN GLY ASN GLY ALA PHE GLU CYS GLY VAL SEQRES 8 A 115 CYS ARG CYS GLY PRO GLY TRP LEU GLY SER GLN CYS GLU SEQRES 9 A 115 THR ARG LEU GLU VAL LEU PHE GLN GLY PRO GLY HET NAG H 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *431(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 GLN H 62 GLN H 65 5 4 HELIX 3 AA3 ARG H 87 THR H 91 5 5 HELIX 4 AA4 SER H 161 ALA H 163 5 3 HELIX 5 AA5 SER H 192 LEU H 194 5 3 HELIX 6 AA6 LYS H 206 ASN H 209 5 4 HELIX 7 AA7 GLN L 85 VAL L 89 5 5 HELIX 8 AA8 SER L 127 SER L 133 1 7 HELIX 9 AA9 LYS L 189 LYS L 194 1 6 HELIX 10 AB1 ILE A 4 GLY A 9 1 6 HELIX 11 AB2 SER A 12 ALA A 18 1 7 HELIX 12 AB3 LYS A 41 ASP A 47 1 7 HELIX 13 AB4 ALA A 50 GLU A 52 5 3 HELIX 14 AB5 CYS A 435 ALA A 441 5 7 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N VAL H 20 SHEET 4 AA1 4 VAL H 68 ARG H 72 -1 N THR H 69 O GLU H 82 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA2 6 ALA H 92 VAL H 99 -1 N ALA H 92 O VAL H 114 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ILE H 59 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA3 4 ALA H 92 VAL H 99 -1 N ALA H 92 O VAL H 114 SHEET 4 AA3 4 LEU H 105 TRP H 108 -1 O SER H 107 N ARG H 98 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AA4 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA4 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AA5 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA5 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 AA6 3 THR H 210 ARG H 215 -1 O THR H 210 N HIS H 205 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 AA7 4 ASP L 76 ILE L 81 -1 O LEU L 79 N ILE L 21 SHEET 4 AA7 4 PHE L 68 SER L 73 -1 N SER L 69 O THR L 80 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 108 LYS L 113 1 O GLU L 111 N LEU L 11 SHEET 3 AA8 6 ALA L 90 GLN L 96 -1 N ALA L 90 O LEU L 110 SHEET 4 AA8 6 LEU L 39 GLN L 44 -1 N TYR L 42 O TYR L 93 SHEET 5 AA8 6 LYS L 51 TYR L 55 -1 O LEU L 53 N TRP L 41 SHEET 6 AA8 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 108 LYS L 113 1 O GLU L 111 N LEU L 11 SHEET 3 AA9 4 ALA L 90 GLN L 96 -1 N ALA L 90 O LEU L 110 SHEET 4 AA9 4 SER L 103 PHE L 104 -1 O SER L 103 N GLN L 96 SHEET 1 AB1 4 SER L 120 PHE L 124 0 SHEET 2 AB1 4 THR L 135 PHE L 145 -1 O LEU L 141 N PHE L 122 SHEET 3 AB1 4 TYR L 179 SER L 188 -1 O TYR L 179 N PHE L 145 SHEET 4 AB1 4 SER L 165 VAL L 169 -1 N GLN L 166 O THR L 184 SHEET 1 AB2 4 ALA L 159 GLN L 161 0 SHEET 2 AB2 4 LYS L 151 VAL L 156 -1 N TRP L 154 O GLN L 161 SHEET 3 AB2 4 VAL L 197 THR L 203 -1 O GLU L 201 N GLN L 153 SHEET 4 AB2 4 VAL L 211 ASN L 216 -1 O VAL L 211 N VAL L 202 SHEET 1 AB3 3 CYS A 38 LEU A 40 0 SHEET 2 AB3 3 CYS A 23 CYS A 26 -1 N ALA A 24 O ASP A 39 SHEET 3 AB3 3 ILE A 54 GLU A 55 -1 O GLU A 55 N TRP A 25 SHEET 1 AB4 2 GLY A 453 GLU A 456 0 SHEET 2 AB4 2 VAL A 459 CYS A 462 -1 O VAL A 459 N GLU A 456 SHEET 1 AB5 2 TRP A 466 LEU A 467 0 SHEET 2 AB5 2 THR A 473 ARG A 474 -1 O THR A 473 N LEU A 467 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.08 SSBOND 2 CYS H 145 CYS H 201 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 94 1555 1555 2.08 SSBOND 4 CYS L 140 CYS L 200 1555 1555 2.03 SSBOND 5 CYS A 5 CYS A 23 1555 1555 2.03 SSBOND 6 CYS A 13 CYS A 435 1555 1555 2.04 SSBOND 7 CYS A 16 CYS A 38 1555 1555 2.03 SSBOND 8 CYS A 26 CYS A 49 1555 1555 2.06 SSBOND 9 CYS A 437 CYS A 457 1555 1555 2.04 SSBOND 10 CYS A 448 CYS A 460 1555 1555 2.05 SSBOND 11 CYS A 462 CYS A 471 1555 1555 2.04 LINK ND2 ASN H 73 C1 NAG H 301 1555 1555 1.45 CISPEP 1 PHE H 151 PRO H 152 0 -8.31 CISPEP 2 GLU H 153 PRO H 154 0 -0.85 CISPEP 3 SER L 7 PRO L 8 0 1.09 CISPEP 4 TYR L 146 PRO L 147 0 5.42 CRYST1 52.386 66.745 221.900 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004507 0.00000 CONECT 155 752 CONECT 570 4029 CONECT 752 155 CONECT 1057 1471 CONECT 1471 1057 CONECT 1775 2326 CONECT 2326 1775 CONECT 2679 3158 CONECT 3158 2679 CONECT 3337 3462 CONECT 3391 3737 CONECT 3415 3572 CONECT 3462 3337 CONECT 3487 3661 CONECT 3572 3415 CONECT 3661 3487 CONECT 3737 3391 CONECT 3748 3896 CONECT 3833 3913 CONECT 3896 3748 CONECT 3913 3833 CONECT 3930 3992 CONECT 3992 3930 CONECT 4029 570 4030 4040 CONECT 4030 4029 4031 4037 CONECT 4031 4030 4032 4038 CONECT 4032 4031 4033 4039 CONECT 4033 4032 4034 4040 CONECT 4034 4033 4041 CONECT 4035 4036 4037 4042 CONECT 4036 4035 CONECT 4037 4030 4035 CONECT 4038 4031 CONECT 4039 4032 CONECT 4040 4029 4033 CONECT 4041 4034 CONECT 4042 4035 MASTER 361 0 1 14 54 0 0 6 4470 3 37 44 END