data_9YBI # _entry.id 9YBI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YBI pdb_00009ybi 10.2210/pdb9ybi/pdb WWPDB D_1000300161 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-09-24 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YBI _pdbx_database_status.recvd_initial_deposition_date 2025-09-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email kalle.gehring@mcgill.ca _pdbx_contact_author.name_first Kalle _pdbx_contact_author.name_last Gehring _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6500-1184 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kozlov, G.' 1 ? 'Mahbub, L.' 2 ? 'Jin, M.' 3 ? 'Gehring, K.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of the CBS pair domain from zebrafish magnesium transporter CNNM2' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kozlov, G.' 1 ? primary 'Mahbub, L.' 2 ? primary 'Jin, M.' 3 ? primary 'Gehring, K.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Metal transporter' 17846.416 2 ? ? ? ? 2 non-polymer syn BENZAMIDINE 120.152 2 ? ? ? ? 3 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSLNIIQGALELRTKTVEDVMTPLRDCFMISGDAILDFATMSEIMESGYTRIPVYEGERCHIVDLLFVKDLAFVDPD DCTPLKTITKFYSHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSLNIIQGALELRTKTVEDVMTPLRDCFMISGDAILDFATMSEIMESGYTRIPVYEGERCHIVDLLFVKDLAFVDPD DCTPLKTITKFYSHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BENZAMIDINE BEN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 LEU n 1 7 ASN n 1 8 ILE n 1 9 ILE n 1 10 GLN n 1 11 GLY n 1 12 ALA n 1 13 LEU n 1 14 GLU n 1 15 LEU n 1 16 ARG n 1 17 THR n 1 18 LYS n 1 19 THR n 1 20 VAL n 1 21 GLU n 1 22 ASP n 1 23 VAL n 1 24 MET n 1 25 THR n 1 26 PRO n 1 27 LEU n 1 28 ARG n 1 29 ASP n 1 30 CYS n 1 31 PHE n 1 32 MET n 1 33 ILE n 1 34 SER n 1 35 GLY n 1 36 ASP n 1 37 ALA n 1 38 ILE n 1 39 LEU n 1 40 ASP n 1 41 PHE n 1 42 ALA n 1 43 THR n 1 44 MET n 1 45 SER n 1 46 GLU n 1 47 ILE n 1 48 MET n 1 49 GLU n 1 50 SER n 1 51 GLY n 1 52 TYR n 1 53 THR n 1 54 ARG n 1 55 ILE n 1 56 PRO n 1 57 VAL n 1 58 TYR n 1 59 GLU n 1 60 GLY n 1 61 GLU n 1 62 ARG n 1 63 CYS n 1 64 HIS n 1 65 ILE n 1 66 VAL n 1 67 ASP n 1 68 LEU n 1 69 LEU n 1 70 PHE n 1 71 VAL n 1 72 LYS n 1 73 ASP n 1 74 LEU n 1 75 ALA n 1 76 PHE n 1 77 VAL n 1 78 ASP n 1 79 PRO n 1 80 ASP n 1 81 ASP n 1 82 CYS n 1 83 THR n 1 84 PRO n 1 85 LEU n 1 86 LYS n 1 87 THR n 1 88 ILE n 1 89 THR n 1 90 LYS n 1 91 PHE n 1 92 TYR n 1 93 SER n 1 94 HIS n 1 95 PRO n 1 96 LEU n 1 97 HIS n 1 98 PHE n 1 99 VAL n 1 100 PHE n 1 101 ASN n 1 102 ASP n 1 103 THR n 1 104 LYS n 1 105 LEU n 1 106 ASP n 1 107 ALA n 1 108 MET n 1 109 LEU n 1 110 GLU n 1 111 GLU n 1 112 PHE n 1 113 LYS n 1 114 LYS n 1 115 GLY n 1 116 LYS n 1 117 SER n 1 118 HIS n 1 119 LEU n 1 120 ALA n 1 121 ILE n 1 122 VAL n 1 123 GLN n 1 124 ARG n 1 125 VAL n 1 126 ASN n 1 127 ASN n 1 128 GLU n 1 129 GLY n 1 130 GLU n 1 131 GLY n 1 132 ASP n 1 133 PRO n 1 134 PHE n 1 135 TYR n 1 136 GLU n 1 137 VAL n 1 138 LEU n 1 139 GLY n 1 140 ILE n 1 141 VAL n 1 142 THR n 1 143 LEU n 1 144 GLU n 1 145 ASP n 1 146 VAL n 1 147 ILE n 1 148 GLU n 1 149 GLU n 1 150 ILE n 1 151 ILE n 1 152 LYS n 1 153 SER n 1 154 GLU n 1 155 ILE n 1 156 LEU n 1 157 ASP n 1 158 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 158 _entity_src_gen.gene_src_common_name 'Zebrafish, Brachydanio rerio' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cnnm2a, im:7136247, si:ch211-67n3.4' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Danio rerio' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEN non-polymer . BENZAMIDINE ? 'C7 H8 N2' 120.152 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 370 370 GLY GLY A . n A 1 2 PRO 2 371 371 PRO PRO A . n A 1 3 LEU 3 372 372 LEU LEU A . n A 1 4 GLY 4 373 373 GLY GLY A . n A 1 5 SER 5 374 374 SER SER A . n A 1 6 LEU 6 375 375 LEU LEU A . n A 1 7 ASN 7 376 376 ASN ASN A . n A 1 8 ILE 8 377 377 ILE ILE A . n A 1 9 ILE 9 378 378 ILE ILE A . n A 1 10 GLN 10 379 379 GLN GLN A . n A 1 11 GLY 11 380 380 GLY GLY A . n A 1 12 ALA 12 381 381 ALA ALA A . n A 1 13 LEU 13 382 382 LEU LEU A . n A 1 14 GLU 14 383 383 GLU GLU A . n A 1 15 LEU 15 384 384 LEU LEU A . n A 1 16 ARG 16 385 385 ARG ARG A . n A 1 17 THR 17 386 386 THR THR A . n A 1 18 LYS 18 387 387 LYS LYS A . n A 1 19 THR 19 388 388 THR THR A . n A 1 20 VAL 20 389 389 VAL VAL A . n A 1 21 GLU 21 390 390 GLU GLU A . n A 1 22 ASP 22 391 391 ASP ASP A . n A 1 23 VAL 23 392 392 VAL VAL A . n A 1 24 MET 24 393 393 MET MET A . n A 1 25 THR 25 394 394 THR THR A . n A 1 26 PRO 26 395 395 PRO PRO A . n A 1 27 LEU 27 396 396 LEU LEU A . n A 1 28 ARG 28 397 397 ARG ARG A . n A 1 29 ASP 29 398 398 ASP ASP A . n A 1 30 CYS 30 399 399 CYS CYS A . n A 1 31 PHE 31 400 400 PHE PHE A . n A 1 32 MET 32 401 401 MET MET A . n A 1 33 ILE 33 402 402 ILE ILE A . n A 1 34 SER 34 403 403 SER SER A . n A 1 35 GLY 35 404 404 GLY GLY A . n A 1 36 ASP 36 405 405 ASP ASP A . n A 1 37 ALA 37 406 406 ALA ALA A . n A 1 38 ILE 38 407 407 ILE ILE A . n A 1 39 LEU 39 408 408 LEU LEU A . n A 1 40 ASP 40 409 409 ASP ASP A . n A 1 41 PHE 41 410 410 PHE PHE A . n A 1 42 ALA 42 411 411 ALA ALA A . n A 1 43 THR 43 412 412 THR THR A . n A 1 44 MET 44 413 413 MET MET A . n A 1 45 SER 45 414 414 SER SER A . n A 1 46 GLU 46 415 415 GLU GLU A . n A 1 47 ILE 47 416 416 ILE ILE A . n A 1 48 MET 48 417 417 MET MET A . n A 1 49 GLU 49 418 418 GLU GLU A . n A 1 50 SER 50 419 419 SER SER A . n A 1 51 GLY 51 420 420 GLY GLY A . n A 1 52 TYR 52 421 421 TYR TYR A . n A 1 53 THR 53 422 422 THR THR A . n A 1 54 ARG 54 423 423 ARG ARG A . n A 1 55 ILE 55 424 424 ILE ILE A . n A 1 56 PRO 56 425 425 PRO PRO A . n A 1 57 VAL 57 426 426 VAL VAL A . n A 1 58 TYR 58 427 427 TYR TYR A . n A 1 59 GLU 59 428 428 GLU GLU A . n A 1 60 GLY 60 429 429 GLY GLY A . n A 1 61 GLU 61 430 430 GLU GLU A . n A 1 62 ARG 62 431 431 ARG ARG A . n A 1 63 CYS 63 432 432 CYS CYS A . n A 1 64 HIS 64 433 433 HIS HIS A . n A 1 65 ILE 65 434 434 ILE ILE A . n A 1 66 VAL 66 435 435 VAL VAL A . n A 1 67 ASP 67 436 436 ASP ASP A . n A 1 68 LEU 68 437 437 LEU LEU A . n A 1 69 LEU 69 438 438 LEU LEU A . n A 1 70 PHE 70 439 439 PHE PHE A . n A 1 71 VAL 71 440 440 VAL VAL A . n A 1 72 LYS 72 441 441 LYS LYS A . n A 1 73 ASP 73 442 442 ASP ASP A . n A 1 74 LEU 74 443 443 LEU LEU A . n A 1 75 ALA 75 444 444 ALA ALA A . n A 1 76 PHE 76 445 445 PHE PHE A . n A 1 77 VAL 77 446 446 VAL VAL A . n A 1 78 ASP 78 447 447 ASP ASP A . n A 1 79 PRO 79 448 448 PRO PRO A . n A 1 80 ASP 80 449 449 ASP ASP A . n A 1 81 ASP 81 450 450 ASP ASP A . n A 1 82 CYS 82 451 451 CYS CYS A . n A 1 83 THR 83 452 452 THR THR A . n A 1 84 PRO 84 453 453 PRO PRO A . n A 1 85 LEU 85 454 454 LEU LEU A . n A 1 86 LYS 86 455 455 LYS LYS A . n A 1 87 THR 87 456 456 THR THR A . n A 1 88 ILE 88 457 457 ILE ILE A . n A 1 89 THR 89 458 458 THR THR A . n A 1 90 LYS 90 459 459 LYS LYS A . n A 1 91 PHE 91 460 460 PHE PHE A . n A 1 92 TYR 92 461 461 TYR TYR A . n A 1 93 SER 93 462 462 SER SER A . n A 1 94 HIS 94 463 463 HIS HIS A . n A 1 95 PRO 95 464 464 PRO PRO A . n A 1 96 LEU 96 465 465 LEU LEU A . n A 1 97 HIS 97 466 466 HIS HIS A . n A 1 98 PHE 98 467 467 PHE PHE A . n A 1 99 VAL 99 468 468 VAL VAL A . n A 1 100 PHE 100 469 469 PHE PHE A . n A 1 101 ASN 101 470 470 ASN ASN A . n A 1 102 ASP 102 471 471 ASP ASP A . n A 1 103 THR 103 472 472 THR THR A . n A 1 104 LYS 104 473 473 LYS LYS A . n A 1 105 LEU 105 474 474 LEU LEU A . n A 1 106 ASP 106 475 475 ASP ASP A . n A 1 107 ALA 107 476 476 ALA ALA A . n A 1 108 MET 108 477 477 MET MET A . n A 1 109 LEU 109 478 478 LEU LEU A . n A 1 110 GLU 110 479 479 GLU GLU A . n A 1 111 GLU 111 480 480 GLU GLU A . n A 1 112 PHE 112 481 481 PHE PHE A . n A 1 113 LYS 113 482 482 LYS LYS A . n A 1 114 LYS 114 483 483 LYS LYS A . n A 1 115 GLY 115 484 484 GLY GLY A . n A 1 116 LYS 116 485 485 LYS LYS A . n A 1 117 SER 117 486 486 SER SER A . n A 1 118 HIS 118 487 487 HIS HIS A . n A 1 119 LEU 119 488 488 LEU LEU A . n A 1 120 ALA 120 489 489 ALA ALA A . n A 1 121 ILE 121 490 490 ILE ILE A . n A 1 122 VAL 122 491 491 VAL VAL A . n A 1 123 GLN 123 492 492 GLN GLN A . n A 1 124 ARG 124 493 493 ARG ARG A . n A 1 125 VAL 125 494 494 VAL VAL A . n A 1 126 ASN 126 495 495 ASN ASN A . n A 1 127 ASN 127 496 496 ASN ASN A . n A 1 128 GLU 128 497 ? ? ? A . n A 1 129 GLY 129 498 ? ? ? A . n A 1 130 GLU 130 499 ? ? ? A . n A 1 131 GLY 131 500 ? ? ? A . n A 1 132 ASP 132 501 ? ? ? A . n A 1 133 PRO 133 502 502 PRO PRO A . n A 1 134 PHE 134 503 503 PHE PHE A . n A 1 135 TYR 135 504 504 TYR TYR A . n A 1 136 GLU 136 505 505 GLU GLU A . n A 1 137 VAL 137 506 506 VAL VAL A . n A 1 138 LEU 138 507 507 LEU LEU A . n A 1 139 GLY 139 508 508 GLY GLY A . n A 1 140 ILE 140 509 509 ILE ILE A . n A 1 141 VAL 141 510 510 VAL VAL A . n A 1 142 THR 142 511 511 THR THR A . n A 1 143 LEU 143 512 512 LEU LEU A . n A 1 144 GLU 144 513 513 GLU GLU A . n A 1 145 ASP 145 514 514 ASP ASP A . n A 1 146 VAL 146 515 515 VAL VAL A . n A 1 147 ILE 147 516 516 ILE ILE A . n A 1 148 GLU 148 517 517 GLU GLU A . n A 1 149 GLU 149 518 518 GLU GLU A . n A 1 150 ILE 150 519 519 ILE ILE A . n A 1 151 ILE 151 520 520 ILE ILE A . n A 1 152 LYS 152 521 521 LYS LYS A . n A 1 153 SER 153 522 522 SER SER A . n A 1 154 GLU 154 523 ? ? ? A . n A 1 155 ILE 155 524 ? ? ? A . n A 1 156 LEU 156 525 ? ? ? A . n A 1 157 ASP 157 526 ? ? ? A . n A 1 158 GLU 158 527 ? ? ? A . n B 1 1 GLY 1 370 370 GLY GLY B . n B 1 2 PRO 2 371 371 PRO PRO B . n B 1 3 LEU 3 372 372 LEU LEU B . n B 1 4 GLY 4 373 373 GLY GLY B . n B 1 5 SER 5 374 374 SER SER B . n B 1 6 LEU 6 375 375 LEU LEU B . n B 1 7 ASN 7 376 376 ASN ASN B . n B 1 8 ILE 8 377 377 ILE ILE B . n B 1 9 ILE 9 378 378 ILE ILE B . n B 1 10 GLN 10 379 379 GLN GLN B . n B 1 11 GLY 11 380 380 GLY GLY B . n B 1 12 ALA 12 381 381 ALA ALA B . n B 1 13 LEU 13 382 382 LEU LEU B . n B 1 14 GLU 14 383 383 GLU GLU B . n B 1 15 LEU 15 384 384 LEU LEU B . n B 1 16 ARG 16 385 385 ARG ARG B . n B 1 17 THR 17 386 386 THR THR B . n B 1 18 LYS 18 387 387 LYS LYS B . n B 1 19 THR 19 388 388 THR THR B . n B 1 20 VAL 20 389 389 VAL VAL B . n B 1 21 GLU 21 390 390 GLU GLU B . n B 1 22 ASP 22 391 391 ASP ASP B . n B 1 23 VAL 23 392 392 VAL VAL B . n B 1 24 MET 24 393 393 MET MET B . n B 1 25 THR 25 394 394 THR THR B . n B 1 26 PRO 26 395 395 PRO PRO B . n B 1 27 LEU 27 396 396 LEU LEU B . n B 1 28 ARG 28 397 397 ARG ARG B . n B 1 29 ASP 29 398 398 ASP ASP B . n B 1 30 CYS 30 399 399 CYS CYS B . n B 1 31 PHE 31 400 400 PHE PHE B . n B 1 32 MET 32 401 401 MET MET B . n B 1 33 ILE 33 402 402 ILE ILE B . n B 1 34 SER 34 403 403 SER SER B . n B 1 35 GLY 35 404 404 GLY GLY B . n B 1 36 ASP 36 405 405 ASP ASP B . n B 1 37 ALA 37 406 406 ALA ALA B . n B 1 38 ILE 38 407 407 ILE ILE B . n B 1 39 LEU 39 408 408 LEU LEU B . n B 1 40 ASP 40 409 409 ASP ASP B . n B 1 41 PHE 41 410 410 PHE PHE B . n B 1 42 ALA 42 411 411 ALA ALA B . n B 1 43 THR 43 412 412 THR THR B . n B 1 44 MET 44 413 413 MET MET B . n B 1 45 SER 45 414 414 SER SER B . n B 1 46 GLU 46 415 415 GLU GLU B . n B 1 47 ILE 47 416 416 ILE ILE B . n B 1 48 MET 48 417 417 MET MET B . n B 1 49 GLU 49 418 418 GLU GLU B . n B 1 50 SER 50 419 419 SER SER B . n B 1 51 GLY 51 420 420 GLY GLY B . n B 1 52 TYR 52 421 421 TYR TYR B . n B 1 53 THR 53 422 422 THR THR B . n B 1 54 ARG 54 423 423 ARG ARG B . n B 1 55 ILE 55 424 424 ILE ILE B . n B 1 56 PRO 56 425 425 PRO PRO B . n B 1 57 VAL 57 426 426 VAL VAL B . n B 1 58 TYR 58 427 427 TYR TYR B . n B 1 59 GLU 59 428 428 GLU GLU B . n B 1 60 GLY 60 429 429 GLY GLY B . n B 1 61 GLU 61 430 430 GLU GLU B . n B 1 62 ARG 62 431 431 ARG ARG B . n B 1 63 CYS 63 432 432 CYS CYS B . n B 1 64 HIS 64 433 433 HIS HIS B . n B 1 65 ILE 65 434 434 ILE ILE B . n B 1 66 VAL 66 435 435 VAL VAL B . n B 1 67 ASP 67 436 436 ASP ASP B . n B 1 68 LEU 68 437 437 LEU LEU B . n B 1 69 LEU 69 438 438 LEU LEU B . n B 1 70 PHE 70 439 439 PHE PHE B . n B 1 71 VAL 71 440 440 VAL VAL B . n B 1 72 LYS 72 441 441 LYS LYS B . n B 1 73 ASP 73 442 442 ASP ASP B . n B 1 74 LEU 74 443 443 LEU LEU B . n B 1 75 ALA 75 444 444 ALA ALA B . n B 1 76 PHE 76 445 445 PHE PHE B . n B 1 77 VAL 77 446 446 VAL VAL B . n B 1 78 ASP 78 447 447 ASP ASP B . n B 1 79 PRO 79 448 448 PRO PRO B . n B 1 80 ASP 80 449 449 ASP ASP B . n B 1 81 ASP 81 450 450 ASP ASP B . n B 1 82 CYS 82 451 451 CYS CYS B . n B 1 83 THR 83 452 452 THR THR B . n B 1 84 PRO 84 453 453 PRO PRO B . n B 1 85 LEU 85 454 454 LEU LEU B . n B 1 86 LYS 86 455 455 LYS LYS B . n B 1 87 THR 87 456 456 THR THR B . n B 1 88 ILE 88 457 457 ILE ILE B . n B 1 89 THR 89 458 458 THR THR B . n B 1 90 LYS 90 459 459 LYS LYS B . n B 1 91 PHE 91 460 460 PHE PHE B . n B 1 92 TYR 92 461 461 TYR TYR B . n B 1 93 SER 93 462 462 SER SER B . n B 1 94 HIS 94 463 463 HIS HIS B . n B 1 95 PRO 95 464 464 PRO PRO B . n B 1 96 LEU 96 465 465 LEU LEU B . n B 1 97 HIS 97 466 466 HIS HIS B . n B 1 98 PHE 98 467 467 PHE PHE B . n B 1 99 VAL 99 468 468 VAL VAL B . n B 1 100 PHE 100 469 469 PHE PHE B . n B 1 101 ASN 101 470 470 ASN ASN B . n B 1 102 ASP 102 471 471 ASP ASP B . n B 1 103 THR 103 472 472 THR THR B . n B 1 104 LYS 104 473 473 LYS LYS B . n B 1 105 LEU 105 474 474 LEU LEU B . n B 1 106 ASP 106 475 475 ASP ASP B . n B 1 107 ALA 107 476 476 ALA ALA B . n B 1 108 MET 108 477 477 MET MET B . n B 1 109 LEU 109 478 478 LEU LEU B . n B 1 110 GLU 110 479 479 GLU GLU B . n B 1 111 GLU 111 480 480 GLU GLU B . n B 1 112 PHE 112 481 481 PHE PHE B . n B 1 113 LYS 113 482 482 LYS LYS B . n B 1 114 LYS 114 483 483 LYS LYS B . n B 1 115 GLY 115 484 484 GLY GLY B . n B 1 116 LYS 116 485 485 LYS LYS B . n B 1 117 SER 117 486 486 SER SER B . n B 1 118 HIS 118 487 487 HIS HIS B . n B 1 119 LEU 119 488 488 LEU LEU B . n B 1 120 ALA 120 489 489 ALA ALA B . n B 1 121 ILE 121 490 490 ILE ILE B . n B 1 122 VAL 122 491 491 VAL VAL B . n B 1 123 GLN 123 492 492 GLN GLN B . n B 1 124 ARG 124 493 493 ARG ARG B . n B 1 125 VAL 125 494 494 VAL VAL B . n B 1 126 ASN 126 495 495 ASN ASN B . n B 1 127 ASN 127 496 496 ASN ASN B . n B 1 128 GLU 128 497 497 GLU GLU B . n B 1 129 GLY 129 498 ? ? ? B . n B 1 130 GLU 130 499 ? ? ? B . n B 1 131 GLY 131 500 ? ? ? B . n B 1 132 ASP 132 501 ? ? ? B . n B 1 133 PRO 133 502 ? ? ? B . n B 1 134 PHE 134 503 503 PHE PHE B . n B 1 135 TYR 135 504 504 TYR TYR B . n B 1 136 GLU 136 505 505 GLU GLU B . n B 1 137 VAL 137 506 506 VAL VAL B . n B 1 138 LEU 138 507 507 LEU LEU B . n B 1 139 GLY 139 508 508 GLY GLY B . n B 1 140 ILE 140 509 509 ILE ILE B . n B 1 141 VAL 141 510 510 VAL VAL B . n B 1 142 THR 142 511 511 THR THR B . n B 1 143 LEU 143 512 512 LEU LEU B . n B 1 144 GLU 144 513 513 GLU GLU B . n B 1 145 ASP 145 514 514 ASP ASP B . n B 1 146 VAL 146 515 515 VAL VAL B . n B 1 147 ILE 147 516 516 ILE ILE B . n B 1 148 GLU 148 517 517 GLU GLU B . n B 1 149 GLU 149 518 518 GLU GLU B . n B 1 150 ILE 150 519 519 ILE ILE B . n B 1 151 ILE 151 520 520 ILE ILE B . n B 1 152 LYS 152 521 521 LYS LYS B . n B 1 153 SER 153 522 522 SER SER B . n B 1 154 GLU 154 523 ? ? ? B . n B 1 155 ILE 155 524 ? ? ? B . n B 1 156 LEU 156 525 ? ? ? B . n B 1 157 ASP 157 526 ? ? ? B . n B 1 158 GLU 158 527 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BEN 1 601 1 BEN BEN A . D 2 BEN 1 601 2 BEN BEN B . E 3 HOH 1 701 2 HOH HOH A . E 3 HOH 2 702 3 HOH HOH A . E 3 HOH 3 703 6 HOH HOH A . E 3 HOH 4 704 4 HOH HOH A . E 3 HOH 5 705 1 HOH HOH A . F 3 HOH 1 701 7 HOH HOH B . F 3 HOH 2 702 8 HOH HOH B . F 3 HOH 3 703 5 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 372 ? CG ? A LEU 3 CG 2 1 Y 1 A LEU 372 ? CD1 ? A LEU 3 CD1 3 1 Y 1 A LEU 372 ? CD2 ? A LEU 3 CD2 4 1 Y 1 A ARG 385 ? CG ? A ARG 16 CG 5 1 Y 1 A ARG 385 ? CD ? A ARG 16 CD 6 1 Y 1 A ARG 385 ? NE ? A ARG 16 NE 7 1 Y 1 A ARG 385 ? CZ ? A ARG 16 CZ 8 1 Y 1 A ARG 385 ? NH1 ? A ARG 16 NH1 9 1 Y 1 A ARG 385 ? NH2 ? A ARG 16 NH2 10 1 Y 1 A LYS 387 ? CG ? A LYS 18 CG 11 1 Y 1 A LYS 387 ? CD ? A LYS 18 CD 12 1 Y 1 A LYS 387 ? CE ? A LYS 18 CE 13 1 Y 1 A LYS 387 ? NZ ? A LYS 18 NZ 14 1 Y 1 A ARG 397 ? CG ? A ARG 28 CG 15 1 Y 1 A ARG 397 ? CD ? A ARG 28 CD 16 1 Y 1 A ARG 397 ? NE ? A ARG 28 NE 17 1 Y 1 A ARG 397 ? CZ ? A ARG 28 CZ 18 1 Y 1 A ARG 397 ? NH1 ? A ARG 28 NH1 19 1 Y 1 A ARG 397 ? NH2 ? A ARG 28 NH2 20 1 Y 1 A GLU 428 ? CG ? A GLU 59 CG 21 1 Y 1 A GLU 428 ? CD ? A GLU 59 CD 22 1 Y 1 A GLU 428 ? OE1 ? A GLU 59 OE1 23 1 Y 1 A GLU 428 ? OE2 ? A GLU 59 OE2 24 1 Y 1 A LYS 455 ? CG ? A LYS 86 CG 25 1 Y 1 A LYS 455 ? CD ? A LYS 86 CD 26 1 Y 1 A LYS 455 ? CE ? A LYS 86 CE 27 1 Y 1 A LYS 455 ? NZ ? A LYS 86 NZ 28 1 Y 1 A LYS 473 ? CG ? A LYS 104 CG 29 1 Y 1 A LYS 473 ? CD ? A LYS 104 CD 30 1 Y 1 A LYS 473 ? CE ? A LYS 104 CE 31 1 Y 1 A LYS 473 ? NZ ? A LYS 104 NZ 32 1 Y 1 A GLU 479 ? CG ? A GLU 110 CG 33 1 Y 1 A GLU 479 ? CD ? A GLU 110 CD 34 1 Y 1 A GLU 479 ? OE1 ? A GLU 110 OE1 35 1 Y 1 A GLU 479 ? OE2 ? A GLU 110 OE2 36 1 Y 1 A LYS 482 ? CG ? A LYS 113 CG 37 1 Y 1 A LYS 482 ? CD ? A LYS 113 CD 38 1 Y 1 A LYS 482 ? CE ? A LYS 113 CE 39 1 Y 1 A LYS 482 ? NZ ? A LYS 113 NZ 40 1 Y 1 A LYS 483 ? CG ? A LYS 114 CG 41 1 Y 1 A LYS 483 ? CD ? A LYS 114 CD 42 1 Y 1 A LYS 483 ? CE ? A LYS 114 CE 43 1 Y 1 A LYS 483 ? NZ ? A LYS 114 NZ 44 1 Y 1 A LYS 485 ? CG ? A LYS 116 CG 45 1 Y 1 A LYS 485 ? CD ? A LYS 116 CD 46 1 Y 1 A LYS 485 ? CE ? A LYS 116 CE 47 1 Y 1 A LYS 485 ? NZ ? A LYS 116 NZ 48 1 Y 1 A PHE 503 ? CG ? A PHE 134 CG 49 1 Y 1 A PHE 503 ? CD1 ? A PHE 134 CD1 50 1 Y 1 A PHE 503 ? CD2 ? A PHE 134 CD2 51 1 Y 1 A PHE 503 ? CE1 ? A PHE 134 CE1 52 1 Y 1 A PHE 503 ? CE2 ? A PHE 134 CE2 53 1 Y 1 A PHE 503 ? CZ ? A PHE 134 CZ 54 1 Y 1 A GLU 517 ? CG ? A GLU 148 CG 55 1 Y 1 A GLU 517 ? CD ? A GLU 148 CD 56 1 Y 1 A GLU 517 ? OE1 ? A GLU 148 OE1 57 1 Y 1 A GLU 517 ? OE2 ? A GLU 148 OE2 58 1 Y 1 B LEU 372 ? CG ? B LEU 3 CG 59 1 Y 1 B LEU 372 ? CD1 ? B LEU 3 CD1 60 1 Y 1 B LEU 372 ? CD2 ? B LEU 3 CD2 61 1 Y 1 B GLN 379 ? CG ? B GLN 10 CG 62 1 Y 1 B GLN 379 ? CD ? B GLN 10 CD 63 1 Y 1 B GLN 379 ? OE1 ? B GLN 10 OE1 64 1 Y 1 B GLN 379 ? NE2 ? B GLN 10 NE2 65 1 Y 1 B GLU 383 ? CG ? B GLU 14 CG 66 1 Y 1 B GLU 383 ? CD ? B GLU 14 CD 67 1 Y 1 B GLU 383 ? OE1 ? B GLU 14 OE1 68 1 Y 1 B GLU 383 ? OE2 ? B GLU 14 OE2 69 1 Y 1 B ARG 385 ? CG ? B ARG 16 CG 70 1 Y 1 B ARG 385 ? CD ? B ARG 16 CD 71 1 Y 1 B ARG 385 ? NE ? B ARG 16 NE 72 1 Y 1 B ARG 385 ? CZ ? B ARG 16 CZ 73 1 Y 1 B ARG 385 ? NH1 ? B ARG 16 NH1 74 1 Y 1 B ARG 385 ? NH2 ? B ARG 16 NH2 75 1 Y 1 B LYS 387 ? CG ? B LYS 18 CG 76 1 Y 1 B LYS 387 ? CD ? B LYS 18 CD 77 1 Y 1 B LYS 387 ? CE ? B LYS 18 CE 78 1 Y 1 B LYS 387 ? NZ ? B LYS 18 NZ 79 1 Y 1 B ARG 397 ? CG ? B ARG 28 CG 80 1 Y 1 B ARG 397 ? CD ? B ARG 28 CD 81 1 Y 1 B ARG 397 ? NE ? B ARG 28 NE 82 1 Y 1 B ARG 397 ? CZ ? B ARG 28 CZ 83 1 Y 1 B ARG 397 ? NH1 ? B ARG 28 NH1 84 1 Y 1 B ARG 397 ? NH2 ? B ARG 28 NH2 85 1 Y 1 B GLU 428 ? CG ? B GLU 59 CG 86 1 Y 1 B GLU 428 ? CD ? B GLU 59 CD 87 1 Y 1 B GLU 428 ? OE1 ? B GLU 59 OE1 88 1 Y 1 B GLU 428 ? OE2 ? B GLU 59 OE2 89 1 Y 1 B LYS 455 ? CG ? B LYS 86 CG 90 1 Y 1 B LYS 455 ? CD ? B LYS 86 CD 91 1 Y 1 B LYS 455 ? CE ? B LYS 86 CE 92 1 Y 1 B LYS 455 ? NZ ? B LYS 86 NZ 93 1 Y 1 B ASP 475 ? CG ? B ASP 106 CG 94 1 Y 1 B ASP 475 ? OD1 ? B ASP 106 OD1 95 1 Y 1 B ASP 475 ? OD2 ? B ASP 106 OD2 96 1 Y 1 B GLU 479 ? CG ? B GLU 110 CG 97 1 Y 1 B GLU 479 ? CD ? B GLU 110 CD 98 1 Y 1 B GLU 479 ? OE1 ? B GLU 110 OE1 99 1 Y 1 B GLU 479 ? OE2 ? B GLU 110 OE2 100 1 Y 1 B GLU 480 ? CG ? B GLU 111 CG 101 1 Y 1 B GLU 480 ? CD ? B GLU 111 CD 102 1 Y 1 B GLU 480 ? OE1 ? B GLU 111 OE1 103 1 Y 1 B GLU 480 ? OE2 ? B GLU 111 OE2 104 1 Y 1 B LYS 482 ? CG ? B LYS 113 CG 105 1 Y 1 B LYS 482 ? CD ? B LYS 113 CD 106 1 Y 1 B LYS 482 ? CE ? B LYS 113 CE 107 1 Y 1 B LYS 482 ? NZ ? B LYS 113 NZ 108 1 Y 1 B LYS 483 ? CG ? B LYS 114 CG 109 1 Y 1 B LYS 483 ? CD ? B LYS 114 CD 110 1 Y 1 B LYS 483 ? CE ? B LYS 114 CE 111 1 Y 1 B LYS 483 ? NZ ? B LYS 114 NZ 112 1 Y 1 B LYS 485 ? CG ? B LYS 116 CG 113 1 Y 1 B LYS 485 ? CD ? B LYS 116 CD 114 1 Y 1 B LYS 485 ? CE ? B LYS 116 CE 115 1 Y 1 B LYS 485 ? NZ ? B LYS 116 NZ 116 1 Y 1 B GLU 497 ? CG ? B GLU 128 CG 117 1 Y 1 B GLU 497 ? CD ? B GLU 128 CD 118 1 Y 1 B GLU 497 ? OE1 ? B GLU 128 OE1 119 1 Y 1 B GLU 497 ? OE2 ? B GLU 128 OE2 120 1 Y 1 B PHE 503 ? CG ? B PHE 134 CG 121 1 Y 1 B PHE 503 ? CD1 ? B PHE 134 CD1 122 1 Y 1 B PHE 503 ? CD2 ? B PHE 134 CD2 123 1 Y 1 B PHE 503 ? CE1 ? B PHE 134 CE1 124 1 Y 1 B PHE 503 ? CE2 ? B PHE 134 CE2 125 1 Y 1 B PHE 503 ? CZ ? B PHE 134 CZ # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19_4092 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9YBI _cell.details ? _cell.formula_units_Z ? _cell.length_a 86.907 _cell.length_a_esd ? _cell.length_b 147.942 _cell.length_b_esd ? _cell.length_c 151.897 _cell.length_c_esd ? _cell.volume 1952969.409 _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall 'I 2b 2c' _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YBI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 6.84 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 82.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.1 M ammonium tartrate pH 6.5, 2% (w/v) benzamidine hydrochloride' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-07-31 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0332 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0332 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 87.03 _reflns.entry_id 9YBI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.000 _reflns.d_resolution_low 46.904 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18551 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 2.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.956 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.00 _reflns_shell.d_res_low 3.05 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1746 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.362 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 83.48 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9YBI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.00 _refine.ls_d_res_low 46.90 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18551 _refine.ls_number_reflns_R_free 912 _refine.ls_number_reflns_R_work 17639 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.78 _refine.ls_percent_reflns_R_free 4.92 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2360 _refine.ls_R_factor_R_free 0.2526 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2351 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.9906 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4372 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 46.90 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 2251 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2225 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0021 ? 2284 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.5514 ? 3110 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0407 ? 380 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0038 ? 397 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 3.7516 ? 310 ? f_dihedral_angle_d ? ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 0.6436512857 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id A _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.00 3.16 . . 113 2398 89.87 . . . . 0.3538 . . . . . . . . . . . . . . . 0.3851 'X-RAY DIFFRACTION' 3.16 3.36 . . 123 2603 95.85 . . . . 0.2841 . . . . . . . . . . . . . . . 0.2970 'X-RAY DIFFRACTION' 3.36 3.61 . . 152 2557 96.78 . . . . 0.2683 . . . . . . . . . . . . . . . 0.2544 'X-RAY DIFFRACTION' 3.62 3.98 . . 146 2629 97.75 . . . . 0.2290 . . . . . . . . . . . . . . . 0.2691 'X-RAY DIFFRACTION' 3.98 4.55 . . 137 2559 94.93 . . . . 0.2046 . . . . . . . . . . . . . . . 0.2362 'X-RAY DIFFRACTION' 4.55 5.74 . . 124 2442 88.82 . . . . 0.2200 . . . . . . . . . . . . . . . 0.2077 'X-RAY DIFFRACTION' 5.74 46.90 . . 117 2451 85.92 . . . . 0.2246 . . . . . . . . . . . . . . . 0.2508 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] -0.999992909896 _struct_ncs_oper.matrix[1][2] 0.000631767156008 _struct_ncs_oper.matrix[1][3] -0.00371228071456 _struct_ncs_oper.matrix[2][1] 0.00370287241407 _struct_ncs_oper.matrix[2][2] -0.0142930636015 _struct_ncs_oper.matrix[2][3] -0.999890992593 _struct_ncs_oper.matrix[3][1] -0.000684758153069 _struct_ncs_oper.matrix[3][2] -0.999897649364 _struct_ncs_oper.matrix[3][3] 0.014290622909 _struct_ncs_oper.vector[1] -21.7581769801 _struct_ncs_oper.vector[2] -37.5032723364 _struct_ncs_oper.vector[3] -37.3413616616 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 370 through 378 or (resid 379 and (name N or name CA or name C or name O or name CB )) or resid 380 through 382 or (resid 383 and (name N or name CA or name C or name O or name CB )) or resid 384 through 474 or (resid 475 through 476 and (name N or name CA or name C or name O or name CB )) or resid 477 through 479 or (resid 480 and (name N or name CA or name C or name O or name CB )) or resid 481 through 496 or resid 503 through 522)) ; ens_1 d_2 ;(chain "B" and (resid 370 through 472 or (resid 473 and (name N or name CA or name C or name O or name CB )) or resid 474 through 496 or resid 503 through 516 or (resid 517 and (name N or name CA or name C or name O or name CB )) or resid 518 through 522)) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 A GLY 1 . A ASN 127 . A GLY 370 A ASN 496 ? ? ens_1 d_1 2 A PHE 134 . A SER 153 . A PHE 503 A SER 522 ? ? ens_1 d_2 1 B GLY 1 . B ASN 127 . B GLY 370 B ASN 496 ? ? ens_1 d_2 2 B PHE 134 . B SER 153 . B PHE 503 B SER 522 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 9YBI _struct.title 'Structure of the CBS pair domain from zebrafish magnesium transporter CNNM2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YBI _struct_keywords.text 'magnesium transporter, Bateman fold, adenosyl-binding domain, protein-binding domain, TRANSPORT PROTEIN' _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A2ATX7_DANRE _struct_ref.pdbx_db_accession A2ATX7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LNIIQGALELRTKTVEDVMTPLRDCFMISGDAILDFATMSEIMESGYTRIPVYEGERCHIVDLLFVKDLAFVDPDDCTPL KTITKFYSHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQRVNNEGEGDPFYEVLGIVTLEDVIEEIIKSEILDE ; _struct_ref.pdbx_align_begin 375 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9YBI A 6 ? 158 ? A2ATX7 375 ? 527 ? 375 527 2 1 9YBI B 6 ? 158 ? A2ATX7 375 ? 527 ? 375 527 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9YBI GLY A 1 ? UNP A2ATX7 ? ? 'expression tag' 370 1 1 9YBI PRO A 2 ? UNP A2ATX7 ? ? 'expression tag' 371 2 1 9YBI LEU A 3 ? UNP A2ATX7 ? ? 'expression tag' 372 3 1 9YBI GLY A 4 ? UNP A2ATX7 ? ? 'expression tag' 373 4 1 9YBI SER A 5 ? UNP A2ATX7 ? ? 'expression tag' 374 5 2 9YBI GLY B 1 ? UNP A2ATX7 ? ? 'expression tag' 370 6 2 9YBI PRO B 2 ? UNP A2ATX7 ? ? 'expression tag' 371 7 2 9YBI LEU B 3 ? UNP A2ATX7 ? ? 'expression tag' 372 8 2 9YBI GLY B 4 ? UNP A2ATX7 ? ? 'expression tag' 373 9 2 9YBI SER B 5 ? UNP A2ATX7 ? ? 'expression tag' 374 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2550 ? 1 MORE -24 ? 1 'SSA (A^2)' 15430 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 1 ? LEU A 15 ? GLY A 370 LEU A 384 1 ? 15 HELX_P HELX_P2 AA2 THR A 19 ? MET A 24 ? THR A 388 MET A 393 1 ? 6 HELX_P HELX_P3 AA3 ARG A 28 ? CYS A 30 ? ARG A 397 CYS A 399 5 ? 3 HELX_P HELX_P4 AA4 ASP A 40 ? SER A 50 ? ASP A 409 SER A 419 1 ? 11 HELX_P HELX_P5 AA5 LYS A 72 ? VAL A 77 ? LYS A 441 VAL A 446 5 ? 6 HELX_P HELX_P6 AA6 ASP A 78 ? CYS A 82 ? ASP A 447 CYS A 451 5 ? 5 HELX_P HELX_P7 AA7 PRO A 84 ? SER A 93 ? PRO A 453 SER A 462 1 ? 10 HELX_P HELX_P8 AA8 LYS A 104 ? GLY A 115 ? LYS A 473 GLY A 484 1 ? 12 HELX_P HELX_P9 AA9 LEU A 143 ? LYS A 152 ? LEU A 512 LYS A 521 1 ? 10 HELX_P HELX_P10 AB1 PRO B 2 ? LEU B 15 ? PRO B 371 LEU B 384 1 ? 14 HELX_P HELX_P11 AB2 THR B 19 ? MET B 24 ? THR B 388 MET B 393 1 ? 6 HELX_P HELX_P12 AB3 ARG B 28 ? CYS B 30 ? ARG B 397 CYS B 399 5 ? 3 HELX_P HELX_P13 AB4 ASP B 40 ? SER B 50 ? ASP B 409 SER B 419 1 ? 11 HELX_P HELX_P14 AB5 LYS B 72 ? VAL B 77 ? LYS B 441 VAL B 446 5 ? 6 HELX_P HELX_P15 AB6 ASP B 78 ? CYS B 82 ? ASP B 447 CYS B 451 5 ? 5 HELX_P HELX_P16 AB7 LEU B 85 ? SER B 93 ? LEU B 454 SER B 462 1 ? 9 HELX_P HELX_P17 AB8 LYS B 104 ? GLY B 115 ? LYS B 473 GLY B 484 1 ? 12 HELX_P HELX_P18 AB9 LEU B 143 ? LYS B 152 ? LEU B 512 LYS B 521 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 3 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 25 ? PRO A 26 ? THR A 394 PRO A 395 AA1 2 PHE A 134 ? THR A 142 ? PHE A 503 THR A 511 AA1 3 LEU A 119 ? ASN A 126 ? LEU A 488 ASN A 495 AA1 4 PHE A 98 ? PHE A 100 ? PHE A 467 PHE A 469 AA2 1 ILE A 33 ? SER A 34 ? ILE A 402 SER A 403 AA2 2 ARG A 54 ? TYR A 58 ? ARG A 423 TYR A 427 AA2 3 ILE A 65 ? PHE A 70 ? ILE A 434 PHE A 439 AA3 1 THR B 25 ? PRO B 26 ? THR B 394 PRO B 395 AA3 2 TYR B 135 ? THR B 142 ? TYR B 504 THR B 511 AA3 3 LEU B 119 ? VAL B 125 ? LEU B 488 VAL B 494 AA3 4 PHE B 98 ? PHE B 100 ? PHE B 467 PHE B 469 AA4 1 ILE B 33 ? SER B 34 ? ILE B 402 SER B 403 AA4 2 ARG B 54 ? TYR B 58 ? ARG B 423 TYR B 427 AA4 3 ILE B 65 ? PHE B 70 ? ILE B 434 PHE B 439 AA5 1 ILE B 38 ? LEU B 39 ? ILE B 407 LEU B 408 AA5 2 THR B 83 ? PRO B 84 ? THR B 452 PRO B 453 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 25 ? N THR A 394 O ILE A 140 ? O ILE A 509 AA1 2 3 O GLU A 136 ? O GLU A 505 N ARG A 124 ? N ARG A 493 AA1 3 4 O ILE A 121 ? O ILE A 490 N VAL A 99 ? N VAL A 468 AA2 1 2 N ILE A 33 ? N ILE A 402 O PRO A 56 ? O PRO A 425 AA2 2 3 N VAL A 57 ? N VAL A 426 O VAL A 66 ? O VAL A 435 AA3 1 2 N THR B 25 ? N THR B 394 O ILE B 140 ? O ILE B 509 AA3 2 3 O GLU B 136 ? O GLU B 505 N ARG B 124 ? N ARG B 493 AA3 3 4 O ILE B 121 ? O ILE B 490 N VAL B 99 ? N VAL B 468 AA4 1 2 N ILE B 33 ? N ILE B 402 O PRO B 56 ? O PRO B 425 AA4 2 3 N VAL B 57 ? N VAL B 426 O VAL B 66 ? O VAL B 435 AA5 1 2 N LEU B 39 ? N LEU B 408 O THR B 83 ? O THR B 452 # _pdbx_entry_details.entry_id 9YBI _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 433 ? ? -101.07 74.44 2 1 HIS B 433 ? ? -100.69 75.37 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z+1/2 3 -x+1/2,y,-z 4 -x,-y+1/2,z 5 x+1/2,y+1/2,z+1/2 6 x+1/2,-y+1/2,-z+1 7 -x+1,y+1/2,-z+1/2 8 -x+1/2,-y+1,z+1/2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 497 ? A GLU 128 2 1 Y 1 A GLY 498 ? A GLY 129 3 1 Y 1 A GLU 499 ? A GLU 130 4 1 Y 1 A GLY 500 ? A GLY 131 5 1 Y 1 A ASP 501 ? A ASP 132 6 1 Y 1 A GLU 523 ? A GLU 154 7 1 Y 1 A ILE 524 ? A ILE 155 8 1 Y 1 A LEU 525 ? A LEU 156 9 1 Y 1 A ASP 526 ? A ASP 157 10 1 Y 1 A GLU 527 ? A GLU 158 11 1 Y 1 B GLY 498 ? B GLY 129 12 1 Y 1 B GLU 499 ? B GLU 130 13 1 Y 1 B GLY 500 ? B GLY 131 14 1 Y 1 B ASP 501 ? B ASP 132 15 1 Y 1 B PRO 502 ? B PRO 133 16 1 Y 1 B GLU 523 ? B GLU 154 17 1 Y 1 B ILE 524 ? B ILE 155 18 1 Y 1 B LEU 525 ? B LEU 156 19 1 Y 1 B ASP 526 ? B ASP 157 20 1 Y 1 B GLU 527 ? B GLU 158 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BEN C1 C Y N 74 BEN C2 C Y N 75 BEN C3 C Y N 76 BEN C4 C Y N 77 BEN C5 C Y N 78 BEN C6 C Y N 79 BEN C C N N 80 BEN N1 N N N 81 BEN N2 N N N 82 BEN H2 H N N 83 BEN H3 H N N 84 BEN H4 H N N 85 BEN H5 H N N 86 BEN H6 H N N 87 BEN HN1 H N N 88 BEN HN21 H N N 89 BEN HN22 H N N 90 CYS N N N N 91 CYS CA C N R 92 CYS C C N N 93 CYS O O N N 94 CYS CB C N N 95 CYS SG S N N 96 CYS OXT O N N 97 CYS H H N N 98 CYS H2 H N N 99 CYS HA H N N 100 CYS HB2 H N N 101 CYS HB3 H N N 102 CYS HG H N N 103 CYS HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 PHE N N N N 267 PHE CA C N S 268 PHE C C N N 269 PHE O O N N 270 PHE CB C N N 271 PHE CG C Y N 272 PHE CD1 C Y N 273 PHE CD2 C Y N 274 PHE CE1 C Y N 275 PHE CE2 C Y N 276 PHE CZ C Y N 277 PHE OXT O N N 278 PHE H H N N 279 PHE H2 H N N 280 PHE HA H N N 281 PHE HB2 H N N 282 PHE HB3 H N N 283 PHE HD1 H N N 284 PHE HD2 H N N 285 PHE HE1 H N N 286 PHE HE2 H N N 287 PHE HZ H N N 288 PHE HXT H N N 289 PRO N N N N 290 PRO CA C N S 291 PRO C C N N 292 PRO O O N N 293 PRO CB C N N 294 PRO CG C N N 295 PRO CD C N N 296 PRO OXT O N N 297 PRO H H N N 298 PRO HA H N N 299 PRO HB2 H N N 300 PRO HB3 H N N 301 PRO HG2 H N N 302 PRO HG3 H N N 303 PRO HD2 H N N 304 PRO HD3 H N N 305 PRO HXT H N N 306 SER N N N N 307 SER CA C N S 308 SER C C N N 309 SER O O N N 310 SER CB C N N 311 SER OG O N N 312 SER OXT O N N 313 SER H H N N 314 SER H2 H N N 315 SER HA H N N 316 SER HB2 H N N 317 SER HB3 H N N 318 SER HG H N N 319 SER HXT H N N 320 THR N N N N 321 THR CA C N S 322 THR C C N N 323 THR O O N N 324 THR CB C N R 325 THR OG1 O N N 326 THR CG2 C N N 327 THR OXT O N N 328 THR H H N N 329 THR H2 H N N 330 THR HA H N N 331 THR HB H N N 332 THR HG1 H N N 333 THR HG21 H N N 334 THR HG22 H N N 335 THR HG23 H N N 336 THR HXT H N N 337 TYR N N N N 338 TYR CA C N S 339 TYR C C N N 340 TYR O O N N 341 TYR CB C N N 342 TYR CG C Y N 343 TYR CD1 C Y N 344 TYR CD2 C Y N 345 TYR CE1 C Y N 346 TYR CE2 C Y N 347 TYR CZ C Y N 348 TYR OH O N N 349 TYR OXT O N N 350 TYR H H N N 351 TYR H2 H N N 352 TYR HA H N N 353 TYR HB2 H N N 354 TYR HB3 H N N 355 TYR HD1 H N N 356 TYR HD2 H N N 357 TYR HE1 H N N 358 TYR HE2 H N N 359 TYR HH H N N 360 TYR HXT H N N 361 VAL N N N N 362 VAL CA C N S 363 VAL C C N N 364 VAL O O N N 365 VAL CB C N N 366 VAL CG1 C N N 367 VAL CG2 C N N 368 VAL OXT O N N 369 VAL H H N N 370 VAL H2 H N N 371 VAL HA H N N 372 VAL HB H N N 373 VAL HG11 H N N 374 VAL HG12 H N N 375 VAL HG13 H N N 376 VAL HG21 H N N 377 VAL HG22 H N N 378 VAL HG23 H N N 379 VAL HXT H N N 380 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BEN C1 C2 doub Y N 70 BEN C1 C6 sing Y N 71 BEN C1 C sing N N 72 BEN C2 C3 sing Y N 73 BEN C2 H2 sing N N 74 BEN C3 C4 doub Y N 75 BEN C3 H3 sing N N 76 BEN C4 C5 sing Y N 77 BEN C4 H4 sing N N 78 BEN C5 C6 doub Y N 79 BEN C5 H5 sing N N 80 BEN C6 H6 sing N N 81 BEN C N1 doub N E 82 BEN C N2 sing N N 83 BEN N1 HN1 sing N N 84 BEN N2 HN21 sing N N 85 BEN N2 HN22 sing N N 86 CYS N CA sing N N 87 CYS N H sing N N 88 CYS N H2 sing N N 89 CYS CA C sing N N 90 CYS CA CB sing N N 91 CYS CA HA sing N N 92 CYS C O doub N N 93 CYS C OXT sing N N 94 CYS CB SG sing N N 95 CYS CB HB2 sing N N 96 CYS CB HB3 sing N N 97 CYS SG HG sing N N 98 CYS OXT HXT sing N N 99 GLN N CA sing N N 100 GLN N H sing N N 101 GLN N H2 sing N N 102 GLN CA C sing N N 103 GLN CA CB sing N N 104 GLN CA HA sing N N 105 GLN C O doub N N 106 GLN C OXT sing N N 107 GLN CB CG sing N N 108 GLN CB HB2 sing N N 109 GLN CB HB3 sing N N 110 GLN CG CD sing N N 111 GLN CG HG2 sing N N 112 GLN CG HG3 sing N N 113 GLN CD OE1 doub N N 114 GLN CD NE2 sing N N 115 GLN NE2 HE21 sing N N 116 GLN NE2 HE22 sing N N 117 GLN OXT HXT sing N N 118 GLU N CA sing N N 119 GLU N H sing N N 120 GLU N H2 sing N N 121 GLU CA C sing N N 122 GLU CA CB sing N N 123 GLU CA HA sing N N 124 GLU C O doub N N 125 GLU C OXT sing N N 126 GLU CB CG sing N N 127 GLU CB HB2 sing N N 128 GLU CB HB3 sing N N 129 GLU CG CD sing N N 130 GLU CG HG2 sing N N 131 GLU CG HG3 sing N N 132 GLU CD OE1 doub N N 133 GLU CD OE2 sing N N 134 GLU OE2 HE2 sing N N 135 GLU OXT HXT sing N N 136 GLY N CA sing N N 137 GLY N H sing N N 138 GLY N H2 sing N N 139 GLY CA C sing N N 140 GLY CA HA2 sing N N 141 GLY CA HA3 sing N N 142 GLY C O doub N N 143 GLY C OXT sing N N 144 GLY OXT HXT sing N N 145 HIS N CA sing N N 146 HIS N H sing N N 147 HIS N H2 sing N N 148 HIS CA C sing N N 149 HIS CA CB sing N N 150 HIS CA HA sing N N 151 HIS C O doub N N 152 HIS C OXT sing N N 153 HIS CB CG sing N N 154 HIS CB HB2 sing N N 155 HIS CB HB3 sing N N 156 HIS CG ND1 sing Y N 157 HIS CG CD2 doub Y N 158 HIS ND1 CE1 doub Y N 159 HIS ND1 HD1 sing N N 160 HIS CD2 NE2 sing Y N 161 HIS CD2 HD2 sing N N 162 HIS CE1 NE2 sing Y N 163 HIS CE1 HE1 sing N N 164 HIS NE2 HE2 sing N N 165 HIS OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 ILE N CA sing N N 169 ILE N H sing N N 170 ILE N H2 sing N N 171 ILE CA C sing N N 172 ILE CA CB sing N N 173 ILE CA HA sing N N 174 ILE C O doub N N 175 ILE C OXT sing N N 176 ILE CB CG1 sing N N 177 ILE CB CG2 sing N N 178 ILE CB HB sing N N 179 ILE CG1 CD1 sing N N 180 ILE CG1 HG12 sing N N 181 ILE CG1 HG13 sing N N 182 ILE CG2 HG21 sing N N 183 ILE CG2 HG22 sing N N 184 ILE CG2 HG23 sing N N 185 ILE CD1 HD11 sing N N 186 ILE CD1 HD12 sing N N 187 ILE CD1 HD13 sing N N 188 ILE OXT HXT sing N N 189 LEU N CA sing N N 190 LEU N H sing N N 191 LEU N H2 sing N N 192 LEU CA C sing N N 193 LEU CA CB sing N N 194 LEU CA HA sing N N 195 LEU C O doub N N 196 LEU C OXT sing N N 197 LEU CB CG sing N N 198 LEU CB HB2 sing N N 199 LEU CB HB3 sing N N 200 LEU CG CD1 sing N N 201 LEU CG CD2 sing N N 202 LEU CG HG sing N N 203 LEU CD1 HD11 sing N N 204 LEU CD1 HD12 sing N N 205 LEU CD1 HD13 sing N N 206 LEU CD2 HD21 sing N N 207 LEU CD2 HD22 sing N N 208 LEU CD2 HD23 sing N N 209 LEU OXT HXT sing N N 210 LYS N CA sing N N 211 LYS N H sing N N 212 LYS N H2 sing N N 213 LYS CA C sing N N 214 LYS CA CB sing N N 215 LYS CA HA sing N N 216 LYS C O doub N N 217 LYS C OXT sing N N 218 LYS CB CG sing N N 219 LYS CB HB2 sing N N 220 LYS CB HB3 sing N N 221 LYS CG CD sing N N 222 LYS CG HG2 sing N N 223 LYS CG HG3 sing N N 224 LYS CD CE sing N N 225 LYS CD HD2 sing N N 226 LYS CD HD3 sing N N 227 LYS CE NZ sing N N 228 LYS CE HE2 sing N N 229 LYS CE HE3 sing N N 230 LYS NZ HZ1 sing N N 231 LYS NZ HZ2 sing N N 232 LYS NZ HZ3 sing N N 233 LYS OXT HXT sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 PHE N CA sing N N 254 PHE N H sing N N 255 PHE N H2 sing N N 256 PHE CA C sing N N 257 PHE CA CB sing N N 258 PHE CA HA sing N N 259 PHE C O doub N N 260 PHE C OXT sing N N 261 PHE CB CG sing N N 262 PHE CB HB2 sing N N 263 PHE CB HB3 sing N N 264 PHE CG CD1 doub Y N 265 PHE CG CD2 sing Y N 266 PHE CD1 CE1 sing Y N 267 PHE CD1 HD1 sing N N 268 PHE CD2 CE2 doub Y N 269 PHE CD2 HD2 sing N N 270 PHE CE1 CZ doub Y N 271 PHE CE1 HE1 sing N N 272 PHE CE2 CZ sing Y N 273 PHE CE2 HE2 sing N N 274 PHE CZ HZ sing N N 275 PHE OXT HXT sing N N 276 PRO N CA sing N N 277 PRO N CD sing N N 278 PRO N H sing N N 279 PRO CA C sing N N 280 PRO CA CB sing N N 281 PRO CA HA sing N N 282 PRO C O doub N N 283 PRO C OXT sing N N 284 PRO CB CG sing N N 285 PRO CB HB2 sing N N 286 PRO CB HB3 sing N N 287 PRO CG CD sing N N 288 PRO CG HG2 sing N N 289 PRO CG HG3 sing N N 290 PRO CD HD2 sing N N 291 PRO CD HD3 sing N N 292 PRO OXT HXT sing N N 293 SER N CA sing N N 294 SER N H sing N N 295 SER N H2 sing N N 296 SER CA C sing N N 297 SER CA CB sing N N 298 SER CA HA sing N N 299 SER C O doub N N 300 SER C OXT sing N N 301 SER CB OG sing N N 302 SER CB HB2 sing N N 303 SER CB HB3 sing N N 304 SER OG HG sing N N 305 SER OXT HXT sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TYR N CA sing N N 323 TYR N H sing N N 324 TYR N H2 sing N N 325 TYR CA C sing N N 326 TYR CA CB sing N N 327 TYR CA HA sing N N 328 TYR C O doub N N 329 TYR C OXT sing N N 330 TYR CB CG sing N N 331 TYR CB HB2 sing N N 332 TYR CB HB3 sing N N 333 TYR CG CD1 doub Y N 334 TYR CG CD2 sing Y N 335 TYR CD1 CE1 sing Y N 336 TYR CD1 HD1 sing N N 337 TYR CD2 CE2 doub Y N 338 TYR CD2 HD2 sing N N 339 TYR CE1 CZ doub Y N 340 TYR CE1 HE1 sing N N 341 TYR CE2 CZ sing Y N 342 TYR CE2 HE2 sing N N 343 TYR CZ OH sing N N 344 TYR OH HH sing N N 345 TYR OXT HXT sing N N 346 VAL N CA sing N N 347 VAL N H sing N N 348 VAL N H2 sing N N 349 VAL CA C sing N N 350 VAL CA CB sing N N 351 VAL CA HA sing N N 352 VAL C O doub N N 353 VAL C OXT sing N N 354 VAL CB CG1 sing N N 355 VAL CB CG2 sing N N 356 VAL CB HB sing N N 357 VAL CG1 HG11 sing N N 358 VAL CG1 HG12 sing N N 359 VAL CG1 HG13 sing N N 360 VAL CG2 HG21 sing N N 361 VAL CG2 HG22 sing N N 362 VAL CG2 HG23 sing N N 363 VAL OXT HXT sing N N 364 # _pdbx_audit_support.funding_organization 'Canadian Institutes of Health Research (CIHR)' _pdbx_audit_support.country Canada _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'I 21 21 21' _space_group.name_Hall 'I 2b 2c' _space_group.IT_number 24 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9YBI _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.011507 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006759 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006583 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 6.96715 ? ? ? 11.43723 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ #