data_9YC5 # _entry.id 9YC5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YC5 pdb_00009yc5 10.2210/pdb9yc5/pdb WWPDB D_1000300176 ? ? EMDB EMD-72760 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-02-04 ? 2 'EM metadata' 1 0 2026-02-04 ? 3 FSC 1 0 2026-02-04 ? 4 'Half map' 1 0 2026-02-04 1 5 'Half map' 1 0 2026-02-04 2 6 Image 1 0 2026-02-04 ? 7 'Primary map' 1 0 2026-02-04 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YC5 _pdbx_database_status.recvd_initial_deposition_date 2025-09-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Human uPAR bound to the Fab fragment of targeted cancer therapeutic antibody FL1' _pdbx_database_related.db_id EMD-72760 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 m-ploug@finsenlab.dk Michael Ploug ? 'principal investigator/group leader' 0000-0003-2215-4265 3 ruby.law@monash.edu Ruby Law H.P. 'principal investigator/group leader' 0000-0001-5432-5781 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Anane, R.F.' 1 0000-0003-3525-0758 'Whisstock, J.C.' 2 0000-0003-4200-5611 'Engelholm, L.H.' 3 0000-0002-6616-1232 'Law, R.H.P.' 4 0000-0001-5432-5781 'Ploug, M.' 5 0000-0003-2215-4265 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Sci.' _citation.journal_id_ASTM PRCIEI _citation.journal_id_CSD 0795 _citation.journal_id_ISSN 1469-896X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 35 _citation.language ? _citation.page_first e70473 _citation.page_last e70473 _citation.title ;Structural basis for uPAR binding to an antibody developed for targeted cancer therapy. Mechanistic insights into flexibility, ligand recognition, and molecular imaging. ; _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/pro.70473 _citation.pdbx_database_id_PubMed 41575054 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Anane, R.F.' 1 0000-0003-3525-0758 primary 'Kumari, A.' 2 ? primary 'Venugopal, H.' 3 ? primary 'Trepout, S.' 4 ? primary 'Whisstock, J.C.' 5 ? primary 'Engelholm, L.H.' 6 ? primary 'Law, R.H.P.' 7 ? primary 'Ploug, M.' 8 0000-0003-2215-4265 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Urokinase plasminogen activator surface receptor' 31501.342 1 ? ? ? ? 2 polymer man 'Anti-uPAR antibody FL1 Fab heavy chain' 23581.258 1 ? ? ? ? 3 polymer man 'Anti-uPAR antibody FL1 Fab light chain' 24168.818 1 ? ? ? ? 4 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 5 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'U-PAR,uPAR,Monocyte activation antigen Mo3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN SGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFH NNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYRSG ; ;LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN SGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFH NNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYRSG ; A ? 2 'polypeptide(L)' no no ;EVQLQQSGSVLVRPGTSVNLSCKASGYTFTSYWMSWVKQRPGQGLEWIGEIFPKSGRINSNENFRGKATLTVDTSSSTAY INLSSLTSEDSAVYYCSPIYSGDYGFADWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC ; ;EVQLQQSGSVLVRPGTSVNLSCKASGYTFTSYWMSWVKQRPGQGLEWIGEIFPKSGRINSNENFRGKATLTVDTSSSTAY INLSSLTSEDSAVYYCSPIYSGDYGFADWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC ; H ? 3 'polypeptide(L)' no no ;DIVMTQTPLSLPVSLGDQASISCRSSQSVVSNNGKTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPWTFGGGTKLEVKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC ; ;DIVMTQTPLSLPVSLGDQASISCRSSQSVVSNNGKTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPWTFGGGTKLEVKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC ; L ? # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ARG n 1 3 CYS n 1 4 MET n 1 5 GLN n 1 6 CYS n 1 7 LYS n 1 8 THR n 1 9 ASN n 1 10 GLY n 1 11 ASP n 1 12 CYS n 1 13 ARG n 1 14 VAL n 1 15 GLU n 1 16 GLU n 1 17 CYS n 1 18 ALA n 1 19 LEU n 1 20 GLY n 1 21 GLN n 1 22 ASP n 1 23 LEU n 1 24 CYS n 1 25 ARG n 1 26 THR n 1 27 THR n 1 28 ILE n 1 29 VAL n 1 30 ARG n 1 31 LEU n 1 32 TRP n 1 33 GLU n 1 34 GLU n 1 35 GLY n 1 36 GLU n 1 37 GLU n 1 38 LEU n 1 39 GLU n 1 40 LEU n 1 41 VAL n 1 42 GLU n 1 43 LYS n 1 44 SER n 1 45 CYS n 1 46 THR n 1 47 HIS n 1 48 SER n 1 49 GLU n 1 50 LYS n 1 51 THR n 1 52 ASN n 1 53 ARG n 1 54 THR n 1 55 LEU n 1 56 SER n 1 57 TYR n 1 58 ARG n 1 59 THR n 1 60 GLY n 1 61 LEU n 1 62 LYS n 1 63 ILE n 1 64 THR n 1 65 SER n 1 66 LEU n 1 67 THR n 1 68 GLU n 1 69 VAL n 1 70 VAL n 1 71 CYS n 1 72 GLY n 1 73 LEU n 1 74 ASP n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 GLN n 1 79 GLY n 1 80 ASN n 1 81 SER n 1 82 GLY n 1 83 ARG n 1 84 ALA n 1 85 VAL n 1 86 THR n 1 87 TYR n 1 88 SER n 1 89 ARG n 1 90 SER n 1 91 ARG n 1 92 TYR n 1 93 LEU n 1 94 GLU n 1 95 CYS n 1 96 ILE n 1 97 SER n 1 98 CYS n 1 99 GLY n 1 100 SER n 1 101 SER n 1 102 ASP n 1 103 MET n 1 104 SER n 1 105 CYS n 1 106 GLU n 1 107 ARG n 1 108 GLY n 1 109 ARG n 1 110 HIS n 1 111 GLN n 1 112 SER n 1 113 LEU n 1 114 GLN n 1 115 CYS n 1 116 ARG n 1 117 SER n 1 118 PRO n 1 119 GLU n 1 120 GLU n 1 121 GLN n 1 122 CYS n 1 123 LEU n 1 124 ASP n 1 125 VAL n 1 126 VAL n 1 127 THR n 1 128 HIS n 1 129 TRP n 1 130 ILE n 1 131 GLN n 1 132 GLU n 1 133 GLY n 1 134 GLU n 1 135 GLU n 1 136 GLY n 1 137 ARG n 1 138 PRO n 1 139 LYS n 1 140 ASP n 1 141 ASP n 1 142 ARG n 1 143 HIS n 1 144 LEU n 1 145 ARG n 1 146 GLY n 1 147 CYS n 1 148 GLY n 1 149 TYR n 1 150 LEU n 1 151 PRO n 1 152 GLY n 1 153 CYS n 1 154 PRO n 1 155 GLY n 1 156 SER n 1 157 ASN n 1 158 GLY n 1 159 PHE n 1 160 HIS n 1 161 ASN n 1 162 ASN n 1 163 ASP n 1 164 THR n 1 165 PHE n 1 166 HIS n 1 167 PHE n 1 168 LEU n 1 169 LYS n 1 170 CYS n 1 171 CYS n 1 172 ASN n 1 173 THR n 1 174 THR n 1 175 LYS n 1 176 CYS n 1 177 ASN n 1 178 GLU n 1 179 GLY n 1 180 PRO n 1 181 ILE n 1 182 LEU n 1 183 GLU n 1 184 LEU n 1 185 GLU n 1 186 ASN n 1 187 LEU n 1 188 PRO n 1 189 GLN n 1 190 ASN n 1 191 GLY n 1 192 ARG n 1 193 GLN n 1 194 CYS n 1 195 TYR n 1 196 SER n 1 197 CYS n 1 198 LYS n 1 199 GLY n 1 200 ASN n 1 201 SER n 1 202 THR n 1 203 HIS n 1 204 GLY n 1 205 CYS n 1 206 SER n 1 207 SER n 1 208 GLU n 1 209 GLU n 1 210 THR n 1 211 PHE n 1 212 LEU n 1 213 ILE n 1 214 ASP n 1 215 CYS n 1 216 ARG n 1 217 GLY n 1 218 PRO n 1 219 MET n 1 220 ASN n 1 221 GLN n 1 222 CYS n 1 223 LEU n 1 224 VAL n 1 225 ALA n 1 226 THR n 1 227 GLY n 1 228 THR n 1 229 HIS n 1 230 GLU n 1 231 PRO n 1 232 LYS n 1 233 ASN n 1 234 GLN n 1 235 SER n 1 236 TYR n 1 237 MET n 1 238 VAL n 1 239 ARG n 1 240 GLY n 1 241 CYS n 1 242 ALA n 1 243 THR n 1 244 ALA n 1 245 SER n 1 246 MET n 1 247 CYS n 1 248 GLN n 1 249 HIS n 1 250 ALA n 1 251 HIS n 1 252 LEU n 1 253 GLY n 1 254 ASP n 1 255 ALA n 1 256 PHE n 1 257 SER n 1 258 MET n 1 259 ASN n 1 260 HIS n 1 261 ILE n 1 262 ASP n 1 263 VAL n 1 264 SER n 1 265 CYS n 1 266 CYS n 1 267 THR n 1 268 LYS n 1 269 SER n 1 270 GLY n 1 271 CYS n 1 272 ASN n 1 273 HIS n 1 274 PRO n 1 275 ASP n 1 276 LEU n 1 277 ASP n 1 278 VAL n 1 279 GLN n 1 280 TYR n 1 281 ARG n 1 282 SER n 1 283 GLY n 2 1 GLU n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 GLN n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 SER n 2 10 VAL n 2 11 LEU n 2 12 VAL n 2 13 ARG n 2 14 PRO n 2 15 GLY n 2 16 THR n 2 17 SER n 2 18 VAL n 2 19 ASN n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 LYS n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 TYR n 2 28 THR n 2 29 PHE n 2 30 THR n 2 31 SER n 2 32 TYR n 2 33 TRP n 2 34 MET n 2 35 SER n 2 36 TRP n 2 37 VAL n 2 38 LYS n 2 39 GLN n 2 40 ARG n 2 41 PRO n 2 42 GLY n 2 43 GLN n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 ILE n 2 49 GLY n 2 50 GLU n 2 51 ILE n 2 52 PHE n 2 53 PRO n 2 54 LYS n 2 55 SER n 2 56 GLY n 2 57 ARG n 2 58 ILE n 2 59 ASN n 2 60 SER n 2 61 ASN n 2 62 GLU n 2 63 ASN n 2 64 PHE n 2 65 ARG n 2 66 GLY n 2 67 LYS n 2 68 ALA n 2 69 THR n 2 70 LEU n 2 71 THR n 2 72 VAL n 2 73 ASP n 2 74 THR n 2 75 SER n 2 76 SER n 2 77 SER n 2 78 THR n 2 79 ALA n 2 80 TYR n 2 81 ILE n 2 82 ASN n 2 83 LEU n 2 84 SER n 2 85 SER n 2 86 LEU n 2 87 THR n 2 88 SER n 2 89 GLU n 2 90 ASP n 2 91 SER n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 SER n 2 98 PRO n 2 99 ILE n 2 100 TYR n 2 101 SER n 2 102 GLY n 2 103 ASP n 2 104 TYR n 2 105 GLY n 2 106 PHE n 2 107 ALA n 2 108 ASP n 2 109 TRP n 2 110 GLY n 2 111 GLN n 2 112 GLY n 2 113 THR n 2 114 LEU n 2 115 VAL n 2 116 THR n 2 117 VAL n 2 118 SER n 2 119 ALA n 2 120 ALA n 2 121 LYS n 2 122 THR n 2 123 THR n 2 124 PRO n 2 125 PRO n 2 126 SER n 2 127 VAL n 2 128 TYR n 2 129 PRO n 2 130 LEU n 2 131 ALA n 2 132 PRO n 2 133 GLY n 2 134 SER n 2 135 ALA n 2 136 ALA n 2 137 GLN n 2 138 THR n 2 139 ASN n 2 140 SER n 2 141 MET n 2 142 VAL n 2 143 THR n 2 144 LEU n 2 145 GLY n 2 146 CYS n 2 147 LEU n 2 148 VAL n 2 149 LYS n 2 150 GLY n 2 151 TYR n 2 152 PHE n 2 153 PRO n 2 154 GLU n 2 155 PRO n 2 156 VAL n 2 157 THR n 2 158 VAL n 2 159 THR n 2 160 TRP n 2 161 ASN n 2 162 SER n 2 163 GLY n 2 164 SER n 2 165 LEU n 2 166 SER n 2 167 SER n 2 168 GLY n 2 169 VAL n 2 170 HIS n 2 171 THR n 2 172 PHE n 2 173 PRO n 2 174 ALA n 2 175 VAL n 2 176 LEU n 2 177 GLN n 2 178 SER n 2 179 ASP n 2 180 LEU n 2 181 TYR n 2 182 THR n 2 183 LEU n 2 184 SER n 2 185 SER n 2 186 SER n 2 187 VAL n 2 188 THR n 2 189 VAL n 2 190 PRO n 2 191 SER n 2 192 SER n 2 193 THR n 2 194 TRP n 2 195 PRO n 2 196 SER n 2 197 GLU n 2 198 THR n 2 199 VAL n 2 200 THR n 2 201 CYS n 2 202 ASN n 2 203 VAL n 2 204 ALA n 2 205 HIS n 2 206 PRO n 2 207 ALA n 2 208 SER n 2 209 SER n 2 210 THR n 2 211 LYS n 2 212 VAL n 2 213 ASP n 2 214 LYS n 2 215 LYS n 2 216 ILE n 2 217 VAL n 2 218 PRO n 2 219 ARG n 2 220 ASP n 2 221 CYS n 3 1 ASP n 3 2 ILE n 3 3 VAL n 3 4 MET n 3 5 THR n 3 6 GLN n 3 7 THR n 3 8 PRO n 3 9 LEU n 3 10 SER n 3 11 LEU n 3 12 PRO n 3 13 VAL n 3 14 SER n 3 15 LEU n 3 16 GLY n 3 17 ASP n 3 18 GLN n 3 19 ALA n 3 20 SER n 3 21 ILE n 3 22 SER n 3 23 CYS n 3 24 ARG n 3 25 SER n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 VAL n 3 30 VAL n 3 31 SER n 3 32 ASN n 3 33 ASN n 3 34 GLY n 3 35 LYS n 3 36 THR n 3 37 TYR n 3 38 LEU n 3 39 GLU n 3 40 TRP n 3 41 TYR n 3 42 LEU n 3 43 GLN n 3 44 LYS n 3 45 PRO n 3 46 GLY n 3 47 GLN n 3 48 SER n 3 49 PRO n 3 50 LYS n 3 51 LEU n 3 52 LEU n 3 53 ILE n 3 54 TYR n 3 55 LYS n 3 56 VAL n 3 57 SER n 3 58 ASN n 3 59 ARG n 3 60 PHE n 3 61 SER n 3 62 GLY n 3 63 VAL n 3 64 PRO n 3 65 ASP n 3 66 ARG n 3 67 PHE n 3 68 SER n 3 69 GLY n 3 70 SER n 3 71 GLY n 3 72 SER n 3 73 GLY n 3 74 THR n 3 75 ASP n 3 76 PHE n 3 77 THR n 3 78 LEU n 3 79 LYS n 3 80 ILE n 3 81 SER n 3 82 ARG n 3 83 VAL n 3 84 GLU n 3 85 ALA n 3 86 GLU n 3 87 ASP n 3 88 LEU n 3 89 GLY n 3 90 VAL n 3 91 TYR n 3 92 TYR n 3 93 CYS n 3 94 PHE n 3 95 GLN n 3 96 GLY n 3 97 SER n 3 98 HIS n 3 99 VAL n 3 100 PRO n 3 101 TRP n 3 102 THR n 3 103 PHE n 3 104 GLY n 3 105 GLY n 3 106 GLY n 3 107 THR n 3 108 LYS n 3 109 LEU n 3 110 GLU n 3 111 VAL n 3 112 LYS n 3 113 ARG n 3 114 ALA n 3 115 ASP n 3 116 ALA n 3 117 ALA n 3 118 PRO n 3 119 THR n 3 120 VAL n 3 121 SER n 3 122 ILE n 3 123 PHE n 3 124 PRO n 3 125 PRO n 3 126 SER n 3 127 SER n 3 128 GLU n 3 129 GLN n 3 130 LEU n 3 131 THR n 3 132 SER n 3 133 GLY n 3 134 GLY n 3 135 ALA n 3 136 SER n 3 137 VAL n 3 138 VAL n 3 139 CYS n 3 140 PHE n 3 141 LEU n 3 142 ASN n 3 143 ASN n 3 144 PHE n 3 145 TYR n 3 146 PRO n 3 147 LYS n 3 148 ASP n 3 149 ILE n 3 150 ASN n 3 151 VAL n 3 152 LYS n 3 153 TRP n 3 154 LYS n 3 155 ILE n 3 156 ASP n 3 157 GLY n 3 158 SER n 3 159 GLU n 3 160 ARG n 3 161 GLN n 3 162 ASN n 3 163 GLY n 3 164 VAL n 3 165 LEU n 3 166 ASN n 3 167 SER n 3 168 TRP n 3 169 THR n 3 170 ASP n 3 171 GLN n 3 172 ASP n 3 173 SER n 3 174 LYS n 3 175 ASP n 3 176 SER n 3 177 THR n 3 178 TYR n 3 179 SER n 3 180 MET n 3 181 SER n 3 182 SER n 3 183 THR n 3 184 LEU n 3 185 THR n 3 186 LEU n 3 187 THR n 3 188 LYS n 3 189 ASP n 3 190 GLU n 3 191 TYR n 3 192 GLU n 3 193 ARG n 3 194 HIS n 3 195 ASN n 3 196 SER n 3 197 TYR n 3 198 THR n 3 199 CYS n 3 200 GLU n 3 201 ALA n 3 202 THR n 3 203 HIS n 3 204 LYS n 3 205 THR n 3 206 SER n 3 207 THR n 3 208 SER n 3 209 PRO n 3 210 ILE n 3 211 VAL n 3 212 LYS n 3 213 SER n 3 214 PHE n 3 215 ASN n 3 216 ARG n 3 217 ASN n 3 218 GLU n 3 219 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 283 human ? 'PLAUR, MO3, UPAR' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Drosophila melanogaster' 7227 ? ? ? ? ? ? ? ? S2 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 221 Mouse ? ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? mouse 'Mus musculus' 10090 ? ? ? ? ? ? ? ? Hybridomas ? ? Hybridomas ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 219 Mouse ? ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? mouse 'Mus musculus' 10090 ? ? ? ? ? ? ? ? Hybridomas ? ? Hybridomas ? ? ? ? ? ? ? ? ? # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 ? ? ? A . n A 1 2 ARG 2 2 ? ? ? A . n A 1 3 CYS 3 3 ? ? ? A . n A 1 4 MET 4 4 ? ? ? A . n A 1 5 GLN 5 5 ? ? ? A . n A 1 6 CYS 6 6 ? ? ? A . n A 1 7 LYS 7 7 ? ? ? A . n A 1 8 THR 8 8 ? ? ? A . n A 1 9 ASN 9 9 ? ? ? A . n A 1 10 GLY 10 10 ? ? ? A . n A 1 11 ASP 11 11 ? ? ? A . n A 1 12 CYS 12 12 ? ? ? A . n A 1 13 ARG 13 13 ? ? ? A . n A 1 14 VAL 14 14 ? ? ? A . n A 1 15 GLU 15 15 ? ? ? A . n A 1 16 GLU 16 16 ? ? ? A . n A 1 17 CYS 17 17 ? ? ? A . n A 1 18 ALA 18 18 ? ? ? A . n A 1 19 LEU 19 19 ? ? ? A . n A 1 20 GLY 20 20 ? ? ? A . n A 1 21 GLN 21 21 ? ? ? A . n A 1 22 ASP 22 22 ? ? ? A . n A 1 23 LEU 23 23 ? ? ? A . n A 1 24 CYS 24 24 ? ? ? A . n A 1 25 ARG 25 25 ? ? ? A . n A 1 26 THR 26 26 ? ? ? A . n A 1 27 THR 27 27 ? ? ? A . n A 1 28 ILE 28 28 ? ? ? A . n A 1 29 VAL 29 29 ? ? ? A . n A 1 30 ARG 30 30 ? ? ? A . n A 1 31 LEU 31 31 ? ? ? A . n A 1 32 TRP 32 32 ? ? ? A . n A 1 33 GLU 33 33 ? ? ? A . n A 1 34 GLU 34 34 ? ? ? A . n A 1 35 GLY 35 35 ? ? ? A . n A 1 36 GLU 36 36 ? ? ? A . n A 1 37 GLU 37 37 ? ? ? A . n A 1 38 LEU 38 38 ? ? ? A . n A 1 39 GLU 39 39 ? ? ? A . n A 1 40 LEU 40 40 ? ? ? A . n A 1 41 VAL 41 41 ? ? ? A . n A 1 42 GLU 42 42 ? ? ? A . n A 1 43 LYS 43 43 ? ? ? A . n A 1 44 SER 44 44 ? ? ? A . n A 1 45 CYS 45 45 ? ? ? A . n A 1 46 THR 46 46 ? ? ? A . n A 1 47 HIS 47 47 ? ? ? A . n A 1 48 SER 48 48 ? ? ? A . n A 1 49 GLU 49 49 ? ? ? A . n A 1 50 LYS 50 50 ? ? ? A . n A 1 51 THR 51 51 ? ? ? A . n A 1 52 ASN 52 52 ? ? ? A . n A 1 53 ARG 53 53 ? ? ? A . n A 1 54 THR 54 54 ? ? ? A . n A 1 55 LEU 55 55 ? ? ? A . n A 1 56 SER 56 56 ? ? ? A . n A 1 57 TYR 57 57 ? ? ? A . n A 1 58 ARG 58 58 ? ? ? A . n A 1 59 THR 59 59 ? ? ? A . n A 1 60 GLY 60 60 ? ? ? A . n A 1 61 LEU 61 61 ? ? ? A . n A 1 62 LYS 62 62 ? ? ? A . n A 1 63 ILE 63 63 ? ? ? A . n A 1 64 THR 64 64 ? ? ? A . n A 1 65 SER 65 65 ? ? ? A . n A 1 66 LEU 66 66 ? ? ? A . n A 1 67 THR 67 67 ? ? ? A . n A 1 68 GLU 68 68 ? ? ? A . n A 1 69 VAL 69 69 ? ? ? A . n A 1 70 VAL 70 70 ? ? ? A . n A 1 71 CYS 71 71 ? ? ? A . n A 1 72 GLY 72 72 ? ? ? A . n A 1 73 LEU 73 73 ? ? ? A . n A 1 74 ASP 74 74 ? ? ? A . n A 1 75 LEU 75 75 ? ? ? A . n A 1 76 CYS 76 76 ? ? ? A . n A 1 77 ASN 77 77 ? ? ? A . n A 1 78 GLN 78 78 ? ? ? A . n A 1 79 GLY 79 79 ? ? ? A . n A 1 80 ASN 80 80 ? ? ? A . n A 1 81 SER 81 81 ? ? ? A . n A 1 82 GLY 82 82 ? ? ? A . n A 1 83 ARG 83 83 ? ? ? A . n A 1 84 ALA 84 84 ? ? ? A . n A 1 85 VAL 85 85 ? ? ? A . n A 1 86 THR 86 86 ? ? ? A . n A 1 87 TYR 87 87 ? ? ? A . n A 1 88 SER 88 88 ? ? ? A . n A 1 89 ARG 89 89 ? ? ? A . n A 1 90 SER 90 90 ? ? ? A . n A 1 91 ARG 91 91 ? ? ? A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 CYS 122 122 122 CYS CYS A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 HIS 128 128 128 HIS HIS A . n A 1 129 TRP 129 129 129 TRP TRP A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 GLU 132 132 ? ? ? A . n A 1 133 GLY 133 133 ? ? ? A . n A 1 134 GLU 134 134 ? ? ? A . n A 1 135 GLU 135 135 ? ? ? A . n A 1 136 GLY 136 136 ? ? ? A . n A 1 137 ARG 137 137 ? ? ? A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 HIS 143 143 143 HIS HIS A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ARG 145 145 145 ARG ARG A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 CYS 147 147 147 CYS CYS A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 PRO 151 151 151 PRO PRO A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 HIS 160 160 160 HIS HIS A . n A 1 161 ASN 161 161 161 ASN ASN A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 PHE 165 165 165 PHE PHE A . n A 1 166 HIS 166 166 166 HIS HIS A . n A 1 167 PHE 167 167 167 PHE PHE A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 CYS 170 170 170 CYS CYS A . n A 1 171 CYS 171 171 171 CYS CYS A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 CYS 176 176 176 CYS CYS A . n A 1 177 ASN 177 177 177 ASN ASN A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 PRO 180 180 180 PRO PRO A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 ASN 186 186 186 ASN ASN A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 PRO 188 188 188 PRO PRO A . n A 1 189 GLN 189 189 189 GLN GLN A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 GLN 193 193 193 GLN GLN A . n A 1 194 CYS 194 194 194 CYS CYS A . n A 1 195 TYR 195 195 195 TYR TYR A . n A 1 196 SER 196 196 196 SER SER A . n A 1 197 CYS 197 197 197 CYS CYS A . n A 1 198 LYS 198 198 198 LYS LYS A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 SER 201 201 201 SER SER A . n A 1 202 THR 202 202 202 THR THR A . n A 1 203 HIS 203 203 203 HIS HIS A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 CYS 205 205 205 CYS CYS A . n A 1 206 SER 206 206 206 SER SER A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 GLU 209 209 209 GLU GLU A . n A 1 210 THR 210 210 210 THR THR A . n A 1 211 PHE 211 211 211 PHE PHE A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 ILE 213 213 213 ILE ILE A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 CYS 215 215 215 CYS CYS A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 PRO 218 218 218 PRO PRO A . n A 1 219 MET 219 219 219 MET MET A . n A 1 220 ASN 220 220 220 ASN ASN A . n A 1 221 GLN 221 221 221 GLN GLN A . n A 1 222 CYS 222 222 222 CYS CYS A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 VAL 224 224 224 VAL VAL A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 THR 228 228 228 THR THR A . n A 1 229 HIS 229 229 229 HIS HIS A . n A 1 230 GLU 230 230 230 GLU GLU A . n A 1 231 PRO 231 231 231 PRO PRO A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 ASN 233 233 233 ASN ASN A . n A 1 234 GLN 234 234 234 GLN GLN A . n A 1 235 SER 235 235 235 SER SER A . n A 1 236 TYR 236 236 236 TYR TYR A . n A 1 237 MET 237 237 237 MET MET A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 GLY 240 240 240 GLY GLY A . n A 1 241 CYS 241 241 241 CYS CYS A . n A 1 242 ALA 242 242 242 ALA ALA A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 SER 245 245 245 SER SER A . n A 1 246 MET 246 246 246 MET MET A . n A 1 247 CYS 247 247 247 CYS CYS A . n A 1 248 GLN 248 248 248 GLN GLN A . n A 1 249 HIS 249 249 249 HIS HIS A . n A 1 250 ALA 250 250 250 ALA ALA A . n A 1 251 HIS 251 251 251 HIS HIS A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 ASP 254 254 254 ASP ASP A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 PHE 256 256 256 PHE PHE A . n A 1 257 SER 257 257 257 SER SER A . n A 1 258 MET 258 258 258 MET MET A . n A 1 259 ASN 259 259 259 ASN ASN A . n A 1 260 HIS 260 260 260 HIS HIS A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 ASP 262 262 262 ASP ASP A . n A 1 263 VAL 263 263 263 VAL VAL A . n A 1 264 SER 264 264 264 SER SER A . n A 1 265 CYS 265 265 265 CYS CYS A . n A 1 266 CYS 266 266 266 CYS CYS A . n A 1 267 THR 267 267 267 THR THR A . n A 1 268 LYS 268 268 268 LYS LYS A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 GLY 270 270 270 GLY GLY A . n A 1 271 CYS 271 271 271 CYS CYS A . n A 1 272 ASN 272 272 272 ASN ASN A . n A 1 273 HIS 273 273 273 HIS HIS A . n A 1 274 PRO 274 274 274 PRO PRO A . n A 1 275 ASP 275 275 275 ASP ASP A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 VAL 278 278 ? ? ? A . n A 1 279 GLN 279 279 ? ? ? A . n A 1 280 TYR 280 280 ? ? ? A . n A 1 281 ARG 281 281 ? ? ? A . n A 1 282 SER 282 282 ? ? ? A . n A 1 283 GLY 283 283 ? ? ? A . n B 2 1 GLU 1 1 1 GLU GLU H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 GLN 3 3 3 GLN GLN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 GLN 5 5 5 GLN GLN H . n B 2 6 GLN 6 6 6 GLN GLN H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 SER 9 9 9 SER SER H . n B 2 10 VAL 10 10 10 VAL VAL H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 ARG 13 13 13 ARG ARG H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 THR 16 16 16 THR THR H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 VAL 18 18 18 VAL VAL H . n B 2 19 ASN 19 19 19 ASN ASN H . n B 2 20 LEU 20 20 20 LEU LEU H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 LYS 23 23 23 LYS LYS H . n B 2 24 ALA 24 24 24 ALA ALA H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 TYR 27 27 27 TYR TYR H . n B 2 28 THR 28 28 28 THR THR H . n B 2 29 PHE 29 29 29 PHE PHE H . n B 2 30 THR 30 30 30 THR THR H . n B 2 31 SER 31 31 31 SER SER H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 TRP 33 33 33 TRP TRP H . n B 2 34 MET 34 34 34 MET MET H . n B 2 35 SER 35 35 35 SER SER H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 LYS 38 38 38 LYS LYS H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 ARG 40 40 40 ARG ARG H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLY 42 42 42 GLY GLY H . n B 2 43 GLN 43 43 43 GLN GLN H . n B 2 44 GLY 44 44 44 GLY GLY H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 ILE 48 48 48 ILE ILE H . n B 2 49 GLY 49 49 49 GLY GLY H . n B 2 50 GLU 50 50 50 GLU GLU H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 PHE 52 52 52 PHE PHE H . n B 2 53 PRO 53 53 53 PRO PRO H . n B 2 54 LYS 54 54 54 LYS LYS H . n B 2 55 SER 55 55 55 SER SER H . n B 2 56 GLY 56 56 56 GLY GLY H . n B 2 57 ARG 57 57 57 ARG ARG H . n B 2 58 ILE 58 58 58 ILE ILE H . n B 2 59 ASN 59 59 59 ASN ASN H . n B 2 60 SER 60 60 60 SER SER H . n B 2 61 ASN 61 61 61 ASN ASN H . n B 2 62 GLU 62 62 62 GLU GLU H . n B 2 63 ASN 63 63 63 ASN ASN H . n B 2 64 PHE 64 64 64 PHE PHE H . n B 2 65 ARG 65 65 65 ARG ARG H . n B 2 66 GLY 66 66 66 GLY GLY H . n B 2 67 LYS 67 67 67 LYS LYS H . n B 2 68 ALA 68 68 68 ALA ALA H . n B 2 69 THR 69 69 69 THR THR H . n B 2 70 LEU 70 70 70 LEU LEU H . n B 2 71 THR 71 71 71 THR THR H . n B 2 72 VAL 72 72 72 VAL VAL H . n B 2 73 ASP 73 73 73 ASP ASP H . n B 2 74 THR 74 74 74 THR THR H . n B 2 75 SER 75 75 75 SER SER H . n B 2 76 SER 76 76 76 SER SER H . n B 2 77 SER 77 77 77 SER SER H . n B 2 78 THR 78 78 78 THR THR H . n B 2 79 ALA 79 79 79 ALA ALA H . n B 2 80 TYR 80 80 80 TYR TYR H . n B 2 81 ILE 81 81 81 ILE ILE H . n B 2 82 ASN 82 82 82 ASN ASN H . n B 2 83 LEU 83 83 83 LEU LEU H . n B 2 84 SER 84 84 84 SER SER H . n B 2 85 SER 85 85 85 SER SER H . n B 2 86 LEU 86 86 86 LEU LEU H . n B 2 87 THR 87 87 87 THR THR H . n B 2 88 SER 88 88 88 SER SER H . n B 2 89 GLU 89 89 89 GLU GLU H . n B 2 90 ASP 90 90 90 ASP ASP H . n B 2 91 SER 91 91 91 SER SER H . n B 2 92 ALA 92 92 92 ALA ALA H . n B 2 93 VAL 93 93 93 VAL VAL H . n B 2 94 TYR 94 94 94 TYR TYR H . n B 2 95 TYR 95 95 95 TYR TYR H . n B 2 96 CYS 96 96 96 CYS CYS H . n B 2 97 SER 97 97 97 SER SER H . n B 2 98 PRO 98 98 98 PRO PRO H . n B 2 99 ILE 99 99 99 ILE ILE H . n B 2 100 TYR 100 100 100 TYR TYR H . n B 2 101 SER 101 101 101 SER SER H . n B 2 102 GLY 102 102 102 GLY GLY H . n B 2 103 ASP 103 103 103 ASP ASP H . n B 2 104 TYR 104 104 104 TYR TYR H . n B 2 105 GLY 105 105 105 GLY GLY H . n B 2 106 PHE 106 106 106 PHE PHE H . n B 2 107 ALA 107 107 107 ALA ALA H . n B 2 108 ASP 108 108 108 ASP ASP H . n B 2 109 TRP 109 109 109 TRP TRP H . n B 2 110 GLY 110 110 110 GLY GLY H . n B 2 111 GLN 111 111 111 GLN GLN H . n B 2 112 GLY 112 112 112 GLY GLY H . n B 2 113 THR 113 113 113 THR THR H . n B 2 114 LEU 114 114 114 LEU LEU H . n B 2 115 VAL 115 115 115 VAL VAL H . n B 2 116 THR 116 116 116 THR THR H . n B 2 117 VAL 117 117 117 VAL VAL H . n B 2 118 SER 118 118 118 SER SER H . n B 2 119 ALA 119 119 119 ALA ALA H . n B 2 120 ALA 120 120 120 ALA ALA H . n B 2 121 LYS 121 121 121 LYS LYS H . n B 2 122 THR 122 122 122 THR THR H . n B 2 123 THR 123 123 123 THR THR H . n B 2 124 PRO 124 124 124 PRO PRO H . n B 2 125 PRO 125 125 125 PRO PRO H . n B 2 126 SER 126 126 126 SER SER H . n B 2 127 VAL 127 127 127 VAL VAL H . n B 2 128 TYR 128 128 128 TYR TYR H . n B 2 129 PRO 129 129 129 PRO PRO H . n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 ALA 131 131 131 ALA ALA H . n B 2 132 PRO 132 132 132 PRO PRO H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 SER 134 134 ? ? ? H . n B 2 135 ALA 135 135 ? ? ? H . n B 2 136 ALA 136 136 ? ? ? H . n B 2 137 GLN 137 137 137 GLN GLN H . n B 2 138 THR 138 138 138 THR THR H . n B 2 139 ASN 139 139 139 ASN ASN H . n B 2 140 SER 140 140 140 SER SER H . n B 2 141 MET 141 141 141 MET MET H . n B 2 142 VAL 142 142 142 VAL VAL H . n B 2 143 THR 143 143 143 THR THR H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 GLY 145 145 145 GLY GLY H . n B 2 146 CYS 146 146 146 CYS CYS H . n B 2 147 LEU 147 147 147 LEU LEU H . n B 2 148 VAL 148 148 148 VAL VAL H . n B 2 149 LYS 149 149 149 LYS LYS H . n B 2 150 GLY 150 150 150 GLY GLY H . n B 2 151 TYR 151 151 151 TYR TYR H . n B 2 152 PHE 152 152 152 PHE PHE H . n B 2 153 PRO 153 153 153 PRO PRO H . n B 2 154 GLU 154 154 154 GLU GLU H . n B 2 155 PRO 155 155 155 PRO PRO H . n B 2 156 VAL 156 156 156 VAL VAL H . n B 2 157 THR 157 157 157 THR THR H . n B 2 158 VAL 158 158 158 VAL VAL H . n B 2 159 THR 159 159 159 THR THR H . n B 2 160 TRP 160 160 160 TRP TRP H . n B 2 161 ASN 161 161 161 ASN ASN H . n B 2 162 SER 162 162 162 SER SER H . n B 2 163 GLY 163 163 163 GLY GLY H . n B 2 164 SER 164 164 164 SER SER H . n B 2 165 LEU 165 165 165 LEU LEU H . n B 2 166 SER 166 166 166 SER SER H . n B 2 167 SER 167 167 167 SER SER H . n B 2 168 GLY 168 168 168 GLY GLY H . n B 2 169 VAL 169 169 169 VAL VAL H . n B 2 170 HIS 170 170 170 HIS HIS H . n B 2 171 THR 171 171 171 THR THR H . n B 2 172 PHE 172 172 172 PHE PHE H . n B 2 173 PRO 173 173 173 PRO PRO H . n B 2 174 ALA 174 174 174 ALA ALA H . n B 2 175 VAL 175 175 175 VAL VAL H . n B 2 176 LEU 176 176 176 LEU LEU H . n B 2 177 GLN 177 177 177 GLN GLN H . n B 2 178 SER 178 178 178 SER SER H . n B 2 179 ASP 179 179 179 ASP ASP H . n B 2 180 LEU 180 180 180 LEU LEU H . n B 2 181 TYR 181 181 181 TYR TYR H . n B 2 182 THR 182 182 182 THR THR H . n B 2 183 LEU 183 183 183 LEU LEU H . n B 2 184 SER 184 184 184 SER SER H . n B 2 185 SER 185 185 185 SER SER H . n B 2 186 SER 186 186 186 SER SER H . n B 2 187 VAL 187 187 187 VAL VAL H . n B 2 188 THR 188 188 188 THR THR H . n B 2 189 VAL 189 189 189 VAL VAL H . n B 2 190 PRO 190 190 190 PRO PRO H . n B 2 191 SER 191 191 191 SER SER H . n B 2 192 SER 192 192 192 SER SER H . n B 2 193 THR 193 193 193 THR THR H . n B 2 194 TRP 194 194 194 TRP TRP H . n B 2 195 PRO 195 195 195 PRO PRO H . n B 2 196 SER 196 196 196 SER SER H . n B 2 197 GLU 197 197 197 GLU GLU H . n B 2 198 THR 198 198 198 THR THR H . n B 2 199 VAL 199 199 199 VAL VAL H . n B 2 200 THR 200 200 200 THR THR H . n B 2 201 CYS 201 201 201 CYS CYS H . n B 2 202 ASN 202 202 202 ASN ASN H . n B 2 203 VAL 203 203 203 VAL VAL H . n B 2 204 ALA 204 204 204 ALA ALA H . n B 2 205 HIS 205 205 205 HIS HIS H . n B 2 206 PRO 206 206 206 PRO PRO H . n B 2 207 ALA 207 207 207 ALA ALA H . n B 2 208 SER 208 208 208 SER SER H . n B 2 209 SER 209 209 209 SER SER H . n B 2 210 THR 210 210 210 THR THR H . n B 2 211 LYS 211 211 211 LYS LYS H . n B 2 212 VAL 212 212 212 VAL VAL H . n B 2 213 ASP 213 213 213 ASP ASP H . n B 2 214 LYS 214 214 214 LYS LYS H . n B 2 215 LYS 215 215 215 LYS LYS H . n B 2 216 ILE 216 216 216 ILE ILE H . n B 2 217 VAL 217 217 217 VAL VAL H . n B 2 218 PRO 218 218 ? ? ? H . n B 2 219 ARG 219 219 ? ? ? H . n B 2 220 ASP 220 220 ? ? ? H . n B 2 221 CYS 221 221 ? ? ? H . n C 3 1 ASP 1 1 1 ASP ASP L . n C 3 2 ILE 2 2 2 ILE ILE L . n C 3 3 VAL 3 3 3 VAL VAL L . n C 3 4 MET 4 4 4 MET MET L . n C 3 5 THR 5 5 5 THR THR L . n C 3 6 GLN 6 6 6 GLN GLN L . n C 3 7 THR 7 7 7 THR THR L . n C 3 8 PRO 8 8 8 PRO PRO L . n C 3 9 LEU 9 9 9 LEU LEU L . n C 3 10 SER 10 10 10 SER SER L . n C 3 11 LEU 11 11 11 LEU LEU L . n C 3 12 PRO 12 12 12 PRO PRO L . n C 3 13 VAL 13 13 13 VAL VAL L . n C 3 14 SER 14 14 14 SER SER L . n C 3 15 LEU 15 15 15 LEU LEU L . n C 3 16 GLY 16 16 16 GLY GLY L . n C 3 17 ASP 17 17 17 ASP ASP L . n C 3 18 GLN 18 18 18 GLN GLN L . n C 3 19 ALA 19 19 19 ALA ALA L . n C 3 20 SER 20 20 20 SER SER L . n C 3 21 ILE 21 21 21 ILE ILE L . n C 3 22 SER 22 22 22 SER SER L . n C 3 23 CYS 23 23 23 CYS CYS L . n C 3 24 ARG 24 24 24 ARG ARG L . n C 3 25 SER 25 25 25 SER SER L . n C 3 26 SER 26 26 26 SER SER L . n C 3 27 GLN 27 27 27 GLN GLN L . n C 3 28 SER 28 28 28 SER SER L . n C 3 29 VAL 29 29 29 VAL VAL L . n C 3 30 VAL 30 30 30 VAL VAL L . n C 3 31 SER 31 31 31 SER SER L . n C 3 32 ASN 32 32 32 ASN ASN L . n C 3 33 ASN 33 33 33 ASN ASN L . n C 3 34 GLY 34 34 34 GLY GLY L . n C 3 35 LYS 35 35 35 LYS LYS L . n C 3 36 THR 36 36 36 THR THR L . n C 3 37 TYR 37 37 37 TYR TYR L . n C 3 38 LEU 38 38 38 LEU LEU L . n C 3 39 GLU 39 39 39 GLU GLU L . n C 3 40 TRP 40 40 40 TRP TRP L . n C 3 41 TYR 41 41 41 TYR TYR L . n C 3 42 LEU 42 42 42 LEU LEU L . n C 3 43 GLN 43 43 43 GLN GLN L . n C 3 44 LYS 44 44 44 LYS LYS L . n C 3 45 PRO 45 45 45 PRO PRO L . n C 3 46 GLY 46 46 46 GLY GLY L . n C 3 47 GLN 47 47 47 GLN GLN L . n C 3 48 SER 48 48 48 SER SER L . n C 3 49 PRO 49 49 49 PRO PRO L . n C 3 50 LYS 50 50 50 LYS LYS L . n C 3 51 LEU 51 51 51 LEU LEU L . n C 3 52 LEU 52 52 52 LEU LEU L . n C 3 53 ILE 53 53 53 ILE ILE L . n C 3 54 TYR 54 54 54 TYR TYR L . n C 3 55 LYS 55 55 55 LYS LYS L . n C 3 56 VAL 56 56 56 VAL VAL L . n C 3 57 SER 57 57 57 SER SER L . n C 3 58 ASN 58 58 58 ASN ASN L . n C 3 59 ARG 59 59 59 ARG ARG L . n C 3 60 PHE 60 60 60 PHE PHE L . n C 3 61 SER 61 61 61 SER SER L . n C 3 62 GLY 62 62 62 GLY GLY L . n C 3 63 VAL 63 63 63 VAL VAL L . n C 3 64 PRO 64 64 64 PRO PRO L . n C 3 65 ASP 65 65 65 ASP ASP L . n C 3 66 ARG 66 66 66 ARG ARG L . n C 3 67 PHE 67 67 67 PHE PHE L . n C 3 68 SER 68 68 68 SER SER L . n C 3 69 GLY 69 69 69 GLY GLY L . n C 3 70 SER 70 70 70 SER SER L . n C 3 71 GLY 71 71 71 GLY GLY L . n C 3 72 SER 72 72 72 SER SER L . n C 3 73 GLY 73 73 73 GLY GLY L . n C 3 74 THR 74 74 74 THR THR L . n C 3 75 ASP 75 75 75 ASP ASP L . n C 3 76 PHE 76 76 76 PHE PHE L . n C 3 77 THR 77 77 77 THR THR L . n C 3 78 LEU 78 78 78 LEU LEU L . n C 3 79 LYS 79 79 79 LYS LYS L . n C 3 80 ILE 80 80 80 ILE ILE L . n C 3 81 SER 81 81 81 SER SER L . n C 3 82 ARG 82 82 82 ARG ARG L . n C 3 83 VAL 83 83 83 VAL VAL L . n C 3 84 GLU 84 84 84 GLU GLU L . n C 3 85 ALA 85 85 85 ALA ALA L . n C 3 86 GLU 86 86 86 GLU GLU L . n C 3 87 ASP 87 87 87 ASP ASP L . n C 3 88 LEU 88 88 88 LEU LEU L . n C 3 89 GLY 89 89 89 GLY GLY L . n C 3 90 VAL 90 90 90 VAL VAL L . n C 3 91 TYR 91 91 91 TYR TYR L . n C 3 92 TYR 92 92 92 TYR TYR L . n C 3 93 CYS 93 93 93 CYS CYS L . n C 3 94 PHE 94 94 94 PHE PHE L . n C 3 95 GLN 95 95 95 GLN GLN L . n C 3 96 GLY 96 96 96 GLY GLY L . n C 3 97 SER 97 97 97 SER SER L . n C 3 98 HIS 98 98 98 HIS HIS L . n C 3 99 VAL 99 99 99 VAL VAL L . n C 3 100 PRO 100 100 100 PRO PRO L . n C 3 101 TRP 101 101 101 TRP TRP L . n C 3 102 THR 102 102 102 THR THR L . n C 3 103 PHE 103 103 103 PHE PHE L . n C 3 104 GLY 104 104 104 GLY GLY L . n C 3 105 GLY 105 105 105 GLY GLY L . n C 3 106 GLY 106 106 106 GLY GLY L . n C 3 107 THR 107 107 107 THR THR L . n C 3 108 LYS 108 108 108 LYS LYS L . n C 3 109 LEU 109 109 109 LEU LEU L . n C 3 110 GLU 110 110 110 GLU GLU L . n C 3 111 VAL 111 111 111 VAL VAL L . n C 3 112 LYS 112 112 112 LYS LYS L . n C 3 113 ARG 113 113 113 ARG ARG L . n C 3 114 ALA 114 114 114 ALA ALA L . n C 3 115 ASP 115 115 115 ASP ASP L . n C 3 116 ALA 116 116 116 ALA ALA L . n C 3 117 ALA 117 117 117 ALA ALA L . n C 3 118 PRO 118 118 118 PRO PRO L . n C 3 119 THR 119 119 119 THR THR L . n C 3 120 VAL 120 120 120 VAL VAL L . n C 3 121 SER 121 121 121 SER SER L . n C 3 122 ILE 122 122 122 ILE ILE L . n C 3 123 PHE 123 123 123 PHE PHE L . n C 3 124 PRO 124 124 124 PRO PRO L . n C 3 125 PRO 125 125 125 PRO PRO L . n C 3 126 SER 126 126 126 SER SER L . n C 3 127 SER 127 127 127 SER SER L . n C 3 128 GLU 128 128 128 GLU GLU L . n C 3 129 GLN 129 129 129 GLN GLN L . n C 3 130 LEU 130 130 130 LEU LEU L . n C 3 131 THR 131 131 131 THR THR L . n C 3 132 SER 132 132 132 SER SER L . n C 3 133 GLY 133 133 133 GLY GLY L . n C 3 134 GLY 134 134 134 GLY GLY L . n C 3 135 ALA 135 135 135 ALA ALA L . n C 3 136 SER 136 136 136 SER SER L . n C 3 137 VAL 137 137 137 VAL VAL L . n C 3 138 VAL 138 138 138 VAL VAL L . n C 3 139 CYS 139 139 139 CYS CYS L . n C 3 140 PHE 140 140 140 PHE PHE L . n C 3 141 LEU 141 141 141 LEU LEU L . n C 3 142 ASN 142 142 142 ASN ASN L . n C 3 143 ASN 143 143 143 ASN ASN L . n C 3 144 PHE 144 144 144 PHE PHE L . n C 3 145 TYR 145 145 145 TYR TYR L . n C 3 146 PRO 146 146 146 PRO PRO L . n C 3 147 LYS 147 147 147 LYS LYS L . n C 3 148 ASP 148 148 148 ASP ASP L . n C 3 149 ILE 149 149 149 ILE ILE L . n C 3 150 ASN 150 150 150 ASN ASN L . n C 3 151 VAL 151 151 151 VAL VAL L . n C 3 152 LYS 152 152 152 LYS LYS L . n C 3 153 TRP 153 153 153 TRP TRP L . n C 3 154 LYS 154 154 154 LYS LYS L . n C 3 155 ILE 155 155 155 ILE ILE L . n C 3 156 ASP 156 156 156 ASP ASP L . n C 3 157 GLY 157 157 157 GLY GLY L . n C 3 158 SER 158 158 158 SER SER L . n C 3 159 GLU 159 159 159 GLU GLU L . n C 3 160 ARG 160 160 160 ARG ARG L . n C 3 161 GLN 161 161 161 GLN GLN L . n C 3 162 ASN 162 162 162 ASN ASN L . n C 3 163 GLY 163 163 163 GLY GLY L . n C 3 164 VAL 164 164 164 VAL VAL L . n C 3 165 LEU 165 165 165 LEU LEU L . n C 3 166 ASN 166 166 166 ASN ASN L . n C 3 167 SER 167 167 167 SER SER L . n C 3 168 TRP 168 168 168 TRP TRP L . n C 3 169 THR 169 169 169 THR THR L . n C 3 170 ASP 170 170 170 ASP ASP L . n C 3 171 GLN 171 171 171 GLN GLN L . n C 3 172 ASP 172 172 172 ASP ASP L . n C 3 173 SER 173 173 173 SER SER L . n C 3 174 LYS 174 174 174 LYS LYS L . n C 3 175 ASP 175 175 175 ASP ASP L . n C 3 176 SER 176 176 176 SER SER L . n C 3 177 THR 177 177 177 THR THR L . n C 3 178 TYR 178 178 178 TYR TYR L . n C 3 179 SER 179 179 179 SER SER L . n C 3 180 MET 180 180 180 MET MET L . n C 3 181 SER 181 181 181 SER SER L . n C 3 182 SER 182 182 182 SER SER L . n C 3 183 THR 183 183 183 THR THR L . n C 3 184 LEU 184 184 184 LEU LEU L . n C 3 185 THR 185 185 185 THR THR L . n C 3 186 LEU 186 186 186 LEU LEU L . n C 3 187 THR 187 187 187 THR THR L . n C 3 188 LYS 188 188 188 LYS LYS L . n C 3 189 ASP 189 189 189 ASP ASP L . n C 3 190 GLU 190 190 190 GLU GLU L . n C 3 191 TYR 191 191 191 TYR TYR L . n C 3 192 GLU 192 192 192 GLU GLU L . n C 3 193 ARG 193 193 193 ARG ARG L . n C 3 194 HIS 194 194 194 HIS HIS L . n C 3 195 ASN 195 195 195 ASN ASN L . n C 3 196 SER 196 196 196 SER SER L . n C 3 197 TYR 197 197 197 TYR TYR L . n C 3 198 THR 198 198 198 THR THR L . n C 3 199 CYS 199 199 199 CYS CYS L . n C 3 200 GLU 200 200 200 GLU GLU L . n C 3 201 ALA 201 201 201 ALA ALA L . n C 3 202 THR 202 202 202 THR THR L . n C 3 203 HIS 203 203 203 HIS HIS L . n C 3 204 LYS 204 204 204 LYS LYS L . n C 3 205 THR 205 205 205 THR THR L . n C 3 206 SER 206 206 206 SER SER L . n C 3 207 THR 207 207 207 THR THR L . n C 3 208 SER 208 208 208 SER SER L . n C 3 209 PRO 209 209 209 PRO PRO L . n C 3 210 ILE 210 210 210 ILE ILE L . n C 3 211 VAL 211 211 211 VAL VAL L . n C 3 212 LYS 212 212 212 LYS LYS L . n C 3 213 SER 213 213 ? ? ? L . n C 3 214 PHE 214 214 ? ? ? L . n C 3 215 ASN 215 215 ? ? ? L . n C 3 216 ARG 216 216 ? ? ? L . n C 3 217 ASN 217 217 ? ? ? L . n C 3 218 GLU 218 218 ? ? ? L . n C 3 219 CYS 219 219 ? ? ? L . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 B NAG 1 B NAG 1 n D 4 NAG 2 B NAG 2 B NAG 2 n D 4 BMA 3 B BMA 3 B BMA 3 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG 1 301 281 NAG NAG A . F 5 NAG 1 302 282 NAG NAG A . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9YC5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YC5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9YC5 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 4799 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.754 ? 6522 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 9.121 ? 755 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.044 ? 738 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 836 ? f_plane_restr ? ? ? # _struct.entry_id 9YC5 _struct.title 'Human uPAR bound to the Fab fragment of targeted cancer therapeutic antibody FL1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YC5 _struct_keywords.text 'Complex, Targeted cancer therapy, Monoclonal anti-uPAR antibody FL1, Antibody-drug conjugate, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP UPAR_HUMAN Q03405 ? 1 ;LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGN SGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFH NNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRG CATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYRSG ; 23 2 PDB 9YC5 9YC5 ? 2 ? 1 3 PDB 9YC5 9YC5 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9YC5 A 1 ? 283 ? Q03405 23 ? 305 ? 1 283 2 2 9YC5 H 1 ? 221 ? 9YC5 1 ? 221 ? 1 221 3 3 9YC5 L 1 ? 219 ? 9YC5 1 ? 219 ? 1 219 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 243 ? HIS A 249 ? THR A 243 HIS A 249 1 ? 7 HELX_P HELX_P2 AA2 LEU A 252 ? SER A 257 ? LEU A 252 SER A 257 1 ? 6 HELX_P HELX_P3 AA3 HIS A 273 ? ASP A 277 ? HIS A 273 ASP A 277 5 ? 5 HELX_P HELX_P4 AA4 THR B 28 ? TYR B 32 ? THR H 28 TYR H 32 5 ? 5 HELX_P HELX_P5 AA5 PRO B 53 ? GLY B 56 ? PRO H 53 GLY H 56 5 ? 4 HELX_P HELX_P6 AA6 THR B 87 ? SER B 91 ? THR H 87 SER H 91 5 ? 5 HELX_P HELX_P7 AA7 THR B 159 ? SER B 164 ? THR H 159 SER H 164 5 ? 6 HELX_P HELX_P8 AA8 SER B 192 ? TRP B 194 ? SER H 192 TRP H 194 5 ? 3 HELX_P HELX_P9 AA9 LYS C 79 ? VAL C 83 ? LYS L 79 VAL L 83 5 ? 5 HELX_P HELX_P10 AB1 ILE C 122 ? SER C 127 ? ILE L 122 SER L 127 1 ? 6 HELX_P HELX_P11 AB2 ILE C 155 ? GLY C 157 ? ILE L 155 GLY L 157 5 ? 3 HELX_P HELX_P12 AB3 THR C 183 ? THR C 187 ? THR L 183 THR L 187 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 95 SG ? ? ? 1_555 A CYS 122 SG ? ? A CYS 95 A CYS 122 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 98 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 98 A CYS 105 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf3 disulf ? ? A CYS 115 SG ? ? ? 1_555 A CYS 147 SG ? ? A CYS 115 A CYS 147 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 170 SG ? ? A CYS 153 A CYS 170 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf5 disulf ? ? A CYS 171 SG ? ? ? 1_555 A CYS 176 SG ? ? A CYS 171 A CYS 176 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf6 disulf ? ? A CYS 194 SG ? ? ? 1_555 A CYS 222 SG ? ? A CYS 194 A CYS 222 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf7 disulf ? ? A CYS 197 SG ? ? ? 1_555 A CYS 205 SG ? ? A CYS 197 A CYS 205 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf8 disulf ? ? A CYS 215 SG ? ? ? 1_555 A CYS 241 SG ? ? A CYS 215 A CYS 241 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf9 disulf ? ? A CYS 247 SG ? ? ? 1_555 A CYS 265 SG ? ? A CYS 247 A CYS 265 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf10 disulf ? ? A CYS 266 SG ? ? ? 1_555 A CYS 271 SG ? ? A CYS 266 A CYS 271 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf11 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 96 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf12 disulf ? ? B CYS 146 SG ? ? ? 1_555 B CYS 201 SG ? ? H CYS 146 H CYS 201 1_555 ? ? ? ? ? ? ? 2.033 ? ? covale1 covale one ? A ASN 162 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 162 A NAG 301 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale2 covale one ? A ASN 172 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 172 A NAG 302 1_555 ? ? ? ? ? ? ? 1.441 ? N-Glycosylation covale3 covale one ? A ASN 200 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 200 B NAG 1 1_555 ? ? ? ? ? ? ? 1.444 ? N-Glycosylation covale4 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale5 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.445 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN A 200 ? NAG B 1 ? 1_555 ASN A 200 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG E . ? ASN A 162 ? NAG A 301 ? 1_555 ASN A 162 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG F . ? ASN A 172 ? NAG A 302 ? 1_555 ASN A 172 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 CYS A 95 ? CYS A 122 ? CYS A 95 ? 1_555 CYS A 122 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 98 ? CYS A 105 ? CYS A 98 ? 1_555 CYS A 105 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 115 ? CYS A 147 ? CYS A 115 ? 1_555 CYS A 147 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 153 ? CYS A 170 ? CYS A 153 ? 1_555 CYS A 170 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS A 171 ? CYS A 176 ? CYS A 171 ? 1_555 CYS A 176 ? 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS A 194 ? CYS A 222 ? CYS A 194 ? 1_555 CYS A 222 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS A 197 ? CYS A 205 ? CYS A 197 ? 1_555 CYS A 205 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS A 215 ? CYS A 241 ? CYS A 215 ? 1_555 CYS A 241 ? 1_555 SG SG . . . None 'Disulfide bridge' 12 CYS A 247 ? CYS A 265 ? CYS A 247 ? 1_555 CYS A 265 ? 1_555 SG SG . . . None 'Disulfide bridge' 13 CYS A 266 ? CYS A 271 ? CYS A 266 ? 1_555 CYS A 271 ? 1_555 SG SG . . . None 'Disulfide bridge' 14 CYS B 22 ? CYS B 96 ? CYS H 22 ? 1_555 CYS H 96 ? 1_555 SG SG . . . None 'Disulfide bridge' 15 CYS B 146 ? CYS B 201 ? CYS H 146 ? 1_555 CYS H 201 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 CYS 153 A . ? CYS 153 A PRO 154 A ? PRO 154 A 1 3.07 2 GLU 230 A . ? GLU 230 A PRO 231 A ? PRO 231 A 1 -6.10 3 TRP 194 B . ? TRP 194 H PRO 195 B ? PRO 195 H 1 -1.09 4 THR 7 C . ? THR 7 L PRO 8 C ? PRO 8 L 1 -5.54 5 PHE 94 C . ? PHE 94 L GLN 95 C ? GLN 95 L 1 23.29 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 8 ? AA3 ? 8 ? AA4 ? 4 ? AA5 ? 2 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 3 ? AB1 ? 4 ? AB2 ? 2 ? AB3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB2 1 2 ? anti-parallel AB3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 94 ? ILE A 96 ? GLU A 94 ILE A 96 AA1 2 SER A 112 ? GLN A 114 ? SER A 112 GLN A 114 AA2 1 CYS A 98 ? GLY A 99 ? CYS A 98 GLY A 99 AA2 2 ARG A 142 ? GLY A 148 ? ARG A 142 GLY A 148 AA2 3 GLN A 121 ? TRP A 129 ? GLN A 121 TRP A 129 AA2 4 THR A 164 ? CYS A 171 ? THR A 164 CYS A 171 AA2 5 ASN A 157 ? HIS A 160 ? ASN A 157 HIS A 160 AA2 6 SER A 235 ? ALA A 242 ? SER A 235 ALA A 242 AA2 7 GLN A 189 ? GLY A 199 ? GLN A 189 GLY A 199 AA2 8 PHE A 211 ? ARG A 216 ? PHE A 211 ARG A 216 AA3 1 CYS A 98 ? GLY A 99 ? CYS A 98 GLY A 99 AA3 2 ARG A 142 ? GLY A 148 ? ARG A 142 GLY A 148 AA3 3 GLN A 121 ? TRP A 129 ? GLN A 121 TRP A 129 AA3 4 THR A 164 ? CYS A 171 ? THR A 164 CYS A 171 AA3 5 ASN A 157 ? HIS A 160 ? ASN A 157 HIS A 160 AA3 6 SER A 235 ? ALA A 242 ? SER A 235 ALA A 242 AA3 7 GLN A 221 ? HIS A 229 ? GLN A 221 HIS A 229 AA3 8 MET A 258 ? CYS A 266 ? MET A 258 CYS A 266 AA4 1 GLN B 3 ? GLN B 6 ? GLN H 3 GLN H 6 AA4 2 VAL B 18 ? SER B 25 ? VAL H 18 SER H 25 AA4 3 THR B 78 ? LEU B 83 ? THR H 78 LEU H 83 AA4 4 ALA B 68 ? ASP B 73 ? ALA H 68 ASP H 73 AA5 1 LEU B 11 ? VAL B 12 ? LEU H 11 VAL H 12 AA5 2 LEU B 114 ? VAL B 115 ? LEU H 114 VAL H 115 AA6 1 ARG B 57 ? SER B 60 ? ARG H 57 SER H 60 AA6 2 LEU B 45 ? PHE B 52 ? LEU H 45 PHE H 52 AA6 3 TRP B 33 ? GLN B 39 ? TRP H 33 GLN H 39 AA6 4 VAL B 93 ? ILE B 99 ? VAL H 93 ILE H 99 AA7 1 PRO B 125 ? TYR B 128 ? PRO H 125 TYR H 128 AA7 2 MET B 141 ? TYR B 151 ? MET H 141 TYR H 151 AA7 3 TYR B 181 ? PRO B 190 ? TYR H 181 PRO H 190 AA7 4 VAL B 169 ? THR B 171 ? VAL H 169 THR H 171 AA8 1 THR C 5 ? THR C 7 ? THR L 5 THR L 7 AA8 2 ILE C 21 ? ARG C 24 ? ILE L 21 ARG L 24 AA8 3 SER C 72 ? ASP C 75 ? SER L 72 ASP L 75 AA8 4 GLY C 62 ? ASP C 65 ? GLY L 62 ASP L 65 AA9 1 SER C 48 ? PRO C 49 ? SER L 48 PRO L 49 AA9 2 THR C 36 ? GLU C 39 ? THR L 36 GLU L 39 AA9 3 GLU C 86 ? GLY C 89 ? GLU L 86 GLY L 89 AB1 1 ALA C 114 ? ALA C 116 ? ALA L 114 ALA L 116 AB1 2 GLY C 133 ? CYS C 139 ? GLY L 133 CYS L 139 AB1 3 SER C 173 ? SER C 179 ? SER L 173 SER L 179 AB1 4 GLU C 159 ? VAL C 164 ? GLU L 159 VAL L 164 AB2 1 GLN C 129 ? LEU C 130 ? GLN L 129 LEU L 130 AB2 2 SER C 181 ? SER C 182 ? SER L 181 SER L 182 AB3 1 HIS C 194 ? ASN C 195 ? HIS L 194 ASN L 195 AB3 2 SER C 206 ? THR C 207 ? SER L 206 THR L 207 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 95 ? N CYS A 95 O LEU A 113 ? O LEU A 113 AA2 1 2 N CYS A 98 ? N CYS A 98 O ARG A 145 ? O ARG A 145 AA2 2 3 O ARG A 142 ? O ARG A 142 N THR A 127 ? N THR A 127 AA2 3 4 N VAL A 126 ? N VAL A 126 O PHE A 167 ? O PHE A 167 AA2 4 5 O HIS A 166 ? O HIS A 166 N PHE A 159 ? N PHE A 159 AA2 5 6 N HIS A 160 ? N HIS A 160 O CYS A 241 ? O CYS A 241 AA2 6 7 O ARG A 239 ? O ARG A 239 N CYS A 197 ? N CYS A 197 AA2 7 8 N SER A 196 ? N SER A 196 O PHE A 211 ? O PHE A 211 AA3 1 2 N CYS A 98 ? N CYS A 98 O ARG A 145 ? O ARG A 145 AA3 2 3 O ARG A 142 ? O ARG A 142 N THR A 127 ? N THR A 127 AA3 3 4 N VAL A 126 ? N VAL A 126 O PHE A 167 ? O PHE A 167 AA3 4 5 O HIS A 166 ? O HIS A 166 N PHE A 159 ? N PHE A 159 AA3 5 6 N HIS A 160 ? N HIS A 160 O CYS A 241 ? O CYS A 241 AA3 6 7 O ALA A 242 ? O ALA A 242 N GLN A 221 ? N GLN A 221 AA3 7 8 N CYS A 222 ? N CYS A 222 O CYS A 266 ? O CYS A 266 AA4 1 2 N GLN B 3 ? N GLN H 3 O SER B 25 ? O SER H 25 AA4 2 3 N CYS B 22 ? N CYS H 22 O ALA B 79 ? O ALA H 79 AA4 3 4 O TYR B 80 ? O TYR H 80 N THR B 71 ? N THR H 71 AA5 1 2 N VAL B 12 ? N VAL H 12 O LEU B 114 ? O LEU H 114 AA6 1 2 O ARG B 57 ? O ARG H 57 N PHE B 52 ? N PHE H 52 AA6 2 3 O ILE B 51 ? O ILE H 51 N MET B 34 ? N MET H 34 AA6 3 4 N SER B 35 ? N SER H 35 O SER B 97 ? O SER H 97 AA7 1 2 N SER B 126 ? N SER H 126 O LEU B 147 ? O LEU H 147 AA7 2 3 N LEU B 144 ? N LEU H 144 O VAL B 187 ? O VAL H 187 AA7 3 4 O SER B 186 ? O SER H 186 N HIS B 170 ? N HIS H 170 AA8 1 2 N THR C 5 ? N THR L 5 O ARG C 24 ? O ARG L 24 AA8 2 3 N ILE C 21 ? N ILE L 21 O GLY C 73 ? O GLY L 73 AA8 3 4 O THR C 74 ? O THR L 74 N VAL C 63 ? N VAL L 63 AA9 1 2 O SER C 48 ? O SER L 48 N TYR C 37 ? N TYR L 37 AA9 2 3 N LEU C 38 ? N LEU L 38 O ASP C 87 ? O ASP L 87 AB1 1 2 N ALA C 114 ? N ALA L 114 O VAL C 137 ? O VAL L 137 AB1 2 3 N GLY C 134 ? N GLY L 134 O THR C 177 ? O THR L 177 AB1 3 4 O SER C 176 ? O SER L 176 N ASN C 162 ? N ASN L 162 AB2 1 2 N LEU C 130 ? N LEU L 130 O SER C 181 ? O SER L 181 AB3 1 2 N HIS C 194 ? N HIS L 194 O THR C 207 ? O THR L 207 # _pdbx_entry_details.entry_id 9YC5 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 111 ? ? 61.66 169.53 2 1 GLU A 178 ? ? -77.74 -169.72 3 1 CYS A 205 ? ? -142.55 33.50 4 1 SER H 9 ? ? -144.49 25.77 5 1 SER H 55 ? ? 72.12 -2.70 6 1 ALA H 131 ? ? 52.63 71.10 7 1 SER H 178 ? ? -147.74 -156.94 8 1 PRO H 206 ? ? 26.75 25.62 9 1 SER H 208 ? ? 62.83 164.97 10 1 VAL H 212 ? ? 48.24 -161.73 11 1 SER L 25 ? ? -172.31 -173.32 12 1 SER L 31 ? ? 178.45 -91.69 13 1 ASN L 33 ? ? -102.18 74.02 14 1 TRP L 40 ? ? 79.37 175.28 15 1 LEU L 42 ? ? -76.72 -165.96 16 1 SER L 70 ? ? -100.55 77.91 17 1 TYR L 92 ? ? 69.97 129.59 18 1 TRP L 101 ? ? -64.07 -179.31 19 1 GLU L 128 ? ? 70.63 39.86 20 1 ASN L 150 ? ? -75.91 -159.71 21 1 VAL L 151 ? ? -68.10 93.95 22 1 SER L 181 ? ? -174.24 -174.27 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY H 112 ? ? THR H 113 ? ? -147.87 2 1 HIS H 205 ? ? PRO H 206 ? ? -148.49 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9YC5 _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'cross-correlation coefficient' _em_3d_fitting.details 'An initial local fitting was performed with ISOLDE implemented in ChimeraX prior to real-space refinement in phenix.' _em_3d_fitting.overall_b_value 112 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range 114-299 _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code AF-Q03405-F1-v4 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9YC5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.94 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 184642 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 16 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20mM Tris, 150mM NaCl, 2.5% Glycerol, 1mM EDTA, pH 7.4' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Binary complex of human uPAR and Fab fragment of anti-uPAR antibody FL1' _em_entity_assembly.details 'Full-length human uPAR, and full-length antibody FL1 (IgG) were mixed to form the protein complex which was used for EM sample.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_image_scans.entry_id 9YC5 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 9YC5 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9YC5 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9YC5 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9YC5 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 1 ? A LEU 1 2 1 Y 1 A ARG 2 ? A ARG 2 3 1 Y 1 A CYS 3 ? A CYS 3 4 1 Y 1 A MET 4 ? A MET 4 5 1 Y 1 A GLN 5 ? A GLN 5 6 1 Y 1 A CYS 6 ? A CYS 6 7 1 Y 1 A LYS 7 ? A LYS 7 8 1 Y 1 A THR 8 ? A THR 8 9 1 Y 1 A ASN 9 ? A ASN 9 10 1 Y 1 A GLY 10 ? A GLY 10 11 1 Y 1 A ASP 11 ? A ASP 11 12 1 Y 1 A CYS 12 ? A CYS 12 13 1 Y 1 A ARG 13 ? A ARG 13 14 1 Y 1 A VAL 14 ? A VAL 14 15 1 Y 1 A GLU 15 ? A GLU 15 16 1 Y 1 A GLU 16 ? A GLU 16 17 1 Y 1 A CYS 17 ? A CYS 17 18 1 Y 1 A ALA 18 ? A ALA 18 19 1 Y 1 A LEU 19 ? A LEU 19 20 1 Y 1 A GLY 20 ? A GLY 20 21 1 Y 1 A GLN 21 ? A GLN 21 22 1 Y 1 A ASP 22 ? A ASP 22 23 1 Y 1 A LEU 23 ? A LEU 23 24 1 Y 1 A CYS 24 ? A CYS 24 25 1 Y 1 A ARG 25 ? A ARG 25 26 1 Y 1 A THR 26 ? A THR 26 27 1 Y 1 A THR 27 ? A THR 27 28 1 Y 1 A ILE 28 ? A ILE 28 29 1 Y 1 A VAL 29 ? A VAL 29 30 1 Y 1 A ARG 30 ? A ARG 30 31 1 Y 1 A LEU 31 ? A LEU 31 32 1 Y 1 A TRP 32 ? A TRP 32 33 1 Y 1 A GLU 33 ? A GLU 33 34 1 Y 1 A GLU 34 ? A GLU 34 35 1 Y 1 A GLY 35 ? A GLY 35 36 1 Y 1 A GLU 36 ? A GLU 36 37 1 Y 1 A GLU 37 ? A GLU 37 38 1 Y 1 A LEU 38 ? A LEU 38 39 1 Y 1 A GLU 39 ? A GLU 39 40 1 Y 1 A LEU 40 ? A LEU 40 41 1 Y 1 A VAL 41 ? A VAL 41 42 1 Y 1 A GLU 42 ? A GLU 42 43 1 Y 1 A LYS 43 ? A LYS 43 44 1 Y 1 A SER 44 ? A SER 44 45 1 Y 1 A CYS 45 ? A CYS 45 46 1 Y 1 A THR 46 ? A THR 46 47 1 Y 1 A HIS 47 ? A HIS 47 48 1 Y 1 A SER 48 ? A SER 48 49 1 Y 1 A GLU 49 ? A GLU 49 50 1 Y 1 A LYS 50 ? A LYS 50 51 1 Y 1 A THR 51 ? A THR 51 52 1 Y 1 A ASN 52 ? A ASN 52 53 1 Y 1 A ARG 53 ? A ARG 53 54 1 Y 1 A THR 54 ? A THR 54 55 1 Y 1 A LEU 55 ? A LEU 55 56 1 Y 1 A SER 56 ? A SER 56 57 1 Y 1 A TYR 57 ? A TYR 57 58 1 Y 1 A ARG 58 ? A ARG 58 59 1 Y 1 A THR 59 ? A THR 59 60 1 Y 1 A GLY 60 ? A GLY 60 61 1 Y 1 A LEU 61 ? A LEU 61 62 1 Y 1 A LYS 62 ? A LYS 62 63 1 Y 1 A ILE 63 ? A ILE 63 64 1 Y 1 A THR 64 ? A THR 64 65 1 Y 1 A SER 65 ? A SER 65 66 1 Y 1 A LEU 66 ? A LEU 66 67 1 Y 1 A THR 67 ? A THR 67 68 1 Y 1 A GLU 68 ? A GLU 68 69 1 Y 1 A VAL 69 ? A VAL 69 70 1 Y 1 A VAL 70 ? A VAL 70 71 1 Y 1 A CYS 71 ? A CYS 71 72 1 Y 1 A GLY 72 ? A GLY 72 73 1 Y 1 A LEU 73 ? A LEU 73 74 1 Y 1 A ASP 74 ? A ASP 74 75 1 Y 1 A LEU 75 ? A LEU 75 76 1 Y 1 A CYS 76 ? A CYS 76 77 1 Y 1 A ASN 77 ? A ASN 77 78 1 Y 1 A GLN 78 ? A GLN 78 79 1 Y 1 A GLY 79 ? A GLY 79 80 1 Y 1 A ASN 80 ? A ASN 80 81 1 Y 1 A SER 81 ? A SER 81 82 1 Y 1 A GLY 82 ? A GLY 82 83 1 Y 1 A ARG 83 ? A ARG 83 84 1 Y 1 A ALA 84 ? A ALA 84 85 1 Y 1 A VAL 85 ? A VAL 85 86 1 Y 1 A THR 86 ? A THR 86 87 1 Y 1 A TYR 87 ? A TYR 87 88 1 Y 1 A SER 88 ? A SER 88 89 1 Y 1 A ARG 89 ? A ARG 89 90 1 Y 1 A SER 90 ? A SER 90 91 1 Y 1 A ARG 91 ? A ARG 91 92 1 Y 1 A GLU 132 ? A GLU 132 93 1 Y 1 A GLY 133 ? A GLY 133 94 1 Y 1 A GLU 134 ? A GLU 134 95 1 Y 1 A GLU 135 ? A GLU 135 96 1 Y 1 A GLY 136 ? A GLY 136 97 1 Y 1 A ARG 137 ? A ARG 137 98 1 Y 1 A VAL 278 ? A VAL 278 99 1 Y 1 A GLN 279 ? A GLN 279 100 1 Y 1 A TYR 280 ? A TYR 280 101 1 Y 1 A ARG 281 ? A ARG 281 102 1 Y 1 A SER 282 ? A SER 282 103 1 Y 1 A GLY 283 ? A GLY 283 104 1 Y 1 H SER 134 ? B SER 134 105 1 Y 1 H ALA 135 ? B ALA 135 106 1 Y 1 H ALA 136 ? B ALA 136 107 1 Y 1 H PRO 218 ? B PRO 218 108 1 Y 1 H ARG 219 ? B ARG 219 109 1 Y 1 H ASP 220 ? B ASP 220 110 1 Y 1 H CYS 221 ? B CYS 221 111 1 Y 1 L SER 213 ? C SER 213 112 1 Y 1 L PHE 214 ? C PHE 214 113 1 Y 1 L ASN 215 ? C ASN 215 114 1 Y 1 L ARG 216 ? C ARG 216 115 1 Y 1 L ASN 217 ? C ASN 217 116 1 Y 1 L GLU 218 ? C GLU 218 117 1 Y 1 L CYS 219 ? C CYS 219 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 ILE N N N N 182 ILE CA C N S 183 ILE C C N N 184 ILE O O N N 185 ILE CB C N S 186 ILE CG1 C N N 187 ILE CG2 C N N 188 ILE CD1 C N N 189 ILE OXT O N N 190 ILE H H N N 191 ILE H2 H N N 192 ILE HA H N N 193 ILE HB H N N 194 ILE HG12 H N N 195 ILE HG13 H N N 196 ILE HG21 H N N 197 ILE HG22 H N N 198 ILE HG23 H N N 199 ILE HD11 H N N 200 ILE HD12 H N N 201 ILE HD13 H N N 202 ILE HXT H N N 203 LEU N N N N 204 LEU CA C N S 205 LEU C C N N 206 LEU O O N N 207 LEU CB C N N 208 LEU CG C N N 209 LEU CD1 C N N 210 LEU CD2 C N N 211 LEU OXT O N N 212 LEU H H N N 213 LEU H2 H N N 214 LEU HA H N N 215 LEU HB2 H N N 216 LEU HB3 H N N 217 LEU HG H N N 218 LEU HD11 H N N 219 LEU HD12 H N N 220 LEU HD13 H N N 221 LEU HD21 H N N 222 LEU HD22 H N N 223 LEU HD23 H N N 224 LEU HXT H N N 225 LYS N N N N 226 LYS CA C N S 227 LYS C C N N 228 LYS O O N N 229 LYS CB C N N 230 LYS CG C N N 231 LYS CD C N N 232 LYS CE C N N 233 LYS NZ N N N 234 LYS OXT O N N 235 LYS H H N N 236 LYS H2 H N N 237 LYS HA H N N 238 LYS HB2 H N N 239 LYS HB3 H N N 240 LYS HG2 H N N 241 LYS HG3 H N N 242 LYS HD2 H N N 243 LYS HD3 H N N 244 LYS HE2 H N N 245 LYS HE3 H N N 246 LYS HZ1 H N N 247 LYS HZ2 H N N 248 LYS HZ3 H N N 249 LYS HXT H N N 250 MET N N N N 251 MET CA C N S 252 MET C C N N 253 MET O O N N 254 MET CB C N N 255 MET CG C N N 256 MET SD S N N 257 MET CE C N N 258 MET OXT O N N 259 MET H H N N 260 MET H2 H N N 261 MET HA H N N 262 MET HB2 H N N 263 MET HB3 H N N 264 MET HG2 H N N 265 MET HG3 H N N 266 MET HE1 H N N 267 MET HE2 H N N 268 MET HE3 H N N 269 MET HXT H N N 270 NAG C1 C N R 271 NAG C2 C N R 272 NAG C3 C N R 273 NAG C4 C N S 274 NAG C5 C N R 275 NAG C6 C N N 276 NAG C7 C N N 277 NAG C8 C N N 278 NAG N2 N N N 279 NAG O1 O N N 280 NAG O3 O N N 281 NAG O4 O N N 282 NAG O5 O N N 283 NAG O6 O N N 284 NAG O7 O N N 285 NAG H1 H N N 286 NAG H2 H N N 287 NAG H3 H N N 288 NAG H4 H N N 289 NAG H5 H N N 290 NAG H61 H N N 291 NAG H62 H N N 292 NAG H81 H N N 293 NAG H82 H N N 294 NAG H83 H N N 295 NAG HN2 H N N 296 NAG HO1 H N N 297 NAG HO3 H N N 298 NAG HO4 H N N 299 NAG HO6 H N N 300 PHE N N N N 301 PHE CA C N S 302 PHE C C N N 303 PHE O O N N 304 PHE CB C N N 305 PHE CG C Y N 306 PHE CD1 C Y N 307 PHE CD2 C Y N 308 PHE CE1 C Y N 309 PHE CE2 C Y N 310 PHE CZ C Y N 311 PHE OXT O N N 312 PHE H H N N 313 PHE H2 H N N 314 PHE HA H N N 315 PHE HB2 H N N 316 PHE HB3 H N N 317 PHE HD1 H N N 318 PHE HD2 H N N 319 PHE HE1 H N N 320 PHE HE2 H N N 321 PHE HZ H N N 322 PHE HXT H N N 323 PRO N N N N 324 PRO CA C N S 325 PRO C C N N 326 PRO O O N N 327 PRO CB C N N 328 PRO CG C N N 329 PRO CD C N N 330 PRO OXT O N N 331 PRO H H N N 332 PRO HA H N N 333 PRO HB2 H N N 334 PRO HB3 H N N 335 PRO HG2 H N N 336 PRO HG3 H N N 337 PRO HD2 H N N 338 PRO HD3 H N N 339 PRO HXT H N N 340 SER N N N N 341 SER CA C N S 342 SER C C N N 343 SER O O N N 344 SER CB C N N 345 SER OG O N N 346 SER OXT O N N 347 SER H H N N 348 SER H2 H N N 349 SER HA H N N 350 SER HB2 H N N 351 SER HB3 H N N 352 SER HG H N N 353 SER HXT H N N 354 THR N N N N 355 THR CA C N S 356 THR C C N N 357 THR O O N N 358 THR CB C N R 359 THR OG1 O N N 360 THR CG2 C N N 361 THR OXT O N N 362 THR H H N N 363 THR H2 H N N 364 THR HA H N N 365 THR HB H N N 366 THR HG1 H N N 367 THR HG21 H N N 368 THR HG22 H N N 369 THR HG23 H N N 370 THR HXT H N N 371 TRP N N N N 372 TRP CA C N S 373 TRP C C N N 374 TRP O O N N 375 TRP CB C N N 376 TRP CG C Y N 377 TRP CD1 C Y N 378 TRP CD2 C Y N 379 TRP NE1 N Y N 380 TRP CE2 C Y N 381 TRP CE3 C Y N 382 TRP CZ2 C Y N 383 TRP CZ3 C Y N 384 TRP CH2 C Y N 385 TRP OXT O N N 386 TRP H H N N 387 TRP H2 H N N 388 TRP HA H N N 389 TRP HB2 H N N 390 TRP HB3 H N N 391 TRP HD1 H N N 392 TRP HE1 H N N 393 TRP HE3 H N N 394 TRP HZ2 H N N 395 TRP HZ3 H N N 396 TRP HH2 H N N 397 TRP HXT H N N 398 TYR N N N N 399 TYR CA C N S 400 TYR C C N N 401 TYR O O N N 402 TYR CB C N N 403 TYR CG C Y N 404 TYR CD1 C Y N 405 TYR CD2 C Y N 406 TYR CE1 C Y N 407 TYR CE2 C Y N 408 TYR CZ C Y N 409 TYR OH O N N 410 TYR OXT O N N 411 TYR H H N N 412 TYR H2 H N N 413 TYR HA H N N 414 TYR HB2 H N N 415 TYR HB3 H N N 416 TYR HD1 H N N 417 TYR HD2 H N N 418 TYR HE1 H N N 419 TYR HE2 H N N 420 TYR HH H N N 421 TYR HXT H N N 422 VAL N N N N 423 VAL CA C N S 424 VAL C C N N 425 VAL O O N N 426 VAL CB C N N 427 VAL CG1 C N N 428 VAL CG2 C N N 429 VAL OXT O N N 430 VAL H H N N 431 VAL H2 H N N 432 VAL HA H N N 433 VAL HB H N N 434 VAL HG11 H N N 435 VAL HG12 H N N 436 VAL HG13 H N N 437 VAL HG21 H N N 438 VAL HG22 H N N 439 VAL HG23 H N N 440 VAL HXT H N N 441 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 LEU N CA sing N N 195 LEU N H sing N N 196 LEU N H2 sing N N 197 LEU CA C sing N N 198 LEU CA CB sing N N 199 LEU CA HA sing N N 200 LEU C O doub N N 201 LEU C OXT sing N N 202 LEU CB CG sing N N 203 LEU CB HB2 sing N N 204 LEU CB HB3 sing N N 205 LEU CG CD1 sing N N 206 LEU CG CD2 sing N N 207 LEU CG HG sing N N 208 LEU CD1 HD11 sing N N 209 LEU CD1 HD12 sing N N 210 LEU CD1 HD13 sing N N 211 LEU CD2 HD21 sing N N 212 LEU CD2 HD22 sing N N 213 LEU CD2 HD23 sing N N 214 LEU OXT HXT sing N N 215 LYS N CA sing N N 216 LYS N H sing N N 217 LYS N H2 sing N N 218 LYS CA C sing N N 219 LYS CA CB sing N N 220 LYS CA HA sing N N 221 LYS C O doub N N 222 LYS C OXT sing N N 223 LYS CB CG sing N N 224 LYS CB HB2 sing N N 225 LYS CB HB3 sing N N 226 LYS CG CD sing N N 227 LYS CG HG2 sing N N 228 LYS CG HG3 sing N N 229 LYS CD CE sing N N 230 LYS CD HD2 sing N N 231 LYS CD HD3 sing N N 232 LYS CE NZ sing N N 233 LYS CE HE2 sing N N 234 LYS CE HE3 sing N N 235 LYS NZ HZ1 sing N N 236 LYS NZ HZ2 sing N N 237 LYS NZ HZ3 sing N N 238 LYS OXT HXT sing N N 239 MET N CA sing N N 240 MET N H sing N N 241 MET N H2 sing N N 242 MET CA C sing N N 243 MET CA CB sing N N 244 MET CA HA sing N N 245 MET C O doub N N 246 MET C OXT sing N N 247 MET CB CG sing N N 248 MET CB HB2 sing N N 249 MET CB HB3 sing N N 250 MET CG SD sing N N 251 MET CG HG2 sing N N 252 MET CG HG3 sing N N 253 MET SD CE sing N N 254 MET CE HE1 sing N N 255 MET CE HE2 sing N N 256 MET CE HE3 sing N N 257 MET OXT HXT sing N N 258 NAG C1 C2 sing N N 259 NAG C1 O1 sing N N 260 NAG C1 O5 sing N N 261 NAG C1 H1 sing N N 262 NAG C2 C3 sing N N 263 NAG C2 N2 sing N N 264 NAG C2 H2 sing N N 265 NAG C3 C4 sing N N 266 NAG C3 O3 sing N N 267 NAG C3 H3 sing N N 268 NAG C4 C5 sing N N 269 NAG C4 O4 sing N N 270 NAG C4 H4 sing N N 271 NAG C5 C6 sing N N 272 NAG C5 O5 sing N N 273 NAG C5 H5 sing N N 274 NAG C6 O6 sing N N 275 NAG C6 H61 sing N N 276 NAG C6 H62 sing N N 277 NAG C7 C8 sing N N 278 NAG C7 N2 sing N N 279 NAG C7 O7 doub N N 280 NAG C8 H81 sing N N 281 NAG C8 H82 sing N N 282 NAG C8 H83 sing N N 283 NAG N2 HN2 sing N N 284 NAG O1 HO1 sing N N 285 NAG O3 HO3 sing N N 286 NAG O4 HO4 sing N N 287 NAG O6 HO6 sing N N 288 PHE N CA sing N N 289 PHE N H sing N N 290 PHE N H2 sing N N 291 PHE CA C sing N N 292 PHE CA CB sing N N 293 PHE CA HA sing N N 294 PHE C O doub N N 295 PHE C OXT sing N N 296 PHE CB CG sing N N 297 PHE CB HB2 sing N N 298 PHE CB HB3 sing N N 299 PHE CG CD1 doub Y N 300 PHE CG CD2 sing Y N 301 PHE CD1 CE1 sing Y N 302 PHE CD1 HD1 sing N N 303 PHE CD2 CE2 doub Y N 304 PHE CD2 HD2 sing N N 305 PHE CE1 CZ doub Y N 306 PHE CE1 HE1 sing N N 307 PHE CE2 CZ sing Y N 308 PHE CE2 HE2 sing N N 309 PHE CZ HZ sing N N 310 PHE OXT HXT sing N N 311 PRO N CA sing N N 312 PRO N CD sing N N 313 PRO N H sing N N 314 PRO CA C sing N N 315 PRO CA CB sing N N 316 PRO CA HA sing N N 317 PRO C O doub N N 318 PRO C OXT sing N N 319 PRO CB CG sing N N 320 PRO CB HB2 sing N N 321 PRO CB HB3 sing N N 322 PRO CG CD sing N N 323 PRO CG HG2 sing N N 324 PRO CG HG3 sing N N 325 PRO CD HD2 sing N N 326 PRO CD HD3 sing N N 327 PRO OXT HXT sing N N 328 SER N CA sing N N 329 SER N H sing N N 330 SER N H2 sing N N 331 SER CA C sing N N 332 SER CA CB sing N N 333 SER CA HA sing N N 334 SER C O doub N N 335 SER C OXT sing N N 336 SER CB OG sing N N 337 SER CB HB2 sing N N 338 SER CB HB3 sing N N 339 SER OG HG sing N N 340 SER OXT HXT sing N N 341 THR N CA sing N N 342 THR N H sing N N 343 THR N H2 sing N N 344 THR CA C sing N N 345 THR CA CB sing N N 346 THR CA HA sing N N 347 THR C O doub N N 348 THR C OXT sing N N 349 THR CB OG1 sing N N 350 THR CB CG2 sing N N 351 THR CB HB sing N N 352 THR OG1 HG1 sing N N 353 THR CG2 HG21 sing N N 354 THR CG2 HG22 sing N N 355 THR CG2 HG23 sing N N 356 THR OXT HXT sing N N 357 TRP N CA sing N N 358 TRP N H sing N N 359 TRP N H2 sing N N 360 TRP CA C sing N N 361 TRP CA CB sing N N 362 TRP CA HA sing N N 363 TRP C O doub N N 364 TRP C OXT sing N N 365 TRP CB CG sing N N 366 TRP CB HB2 sing N N 367 TRP CB HB3 sing N N 368 TRP CG CD1 doub Y N 369 TRP CG CD2 sing Y N 370 TRP CD1 NE1 sing Y N 371 TRP CD1 HD1 sing N N 372 TRP CD2 CE2 doub Y N 373 TRP CD2 CE3 sing Y N 374 TRP NE1 CE2 sing Y N 375 TRP NE1 HE1 sing N N 376 TRP CE2 CZ2 sing Y N 377 TRP CE3 CZ3 doub Y N 378 TRP CE3 HE3 sing N N 379 TRP CZ2 CH2 doub Y N 380 TRP CZ2 HZ2 sing N N 381 TRP CZ3 CH2 sing Y N 382 TRP CZ3 HZ3 sing N N 383 TRP CH2 HH2 sing N N 384 TRP OXT HXT sing N N 385 TYR N CA sing N N 386 TYR N H sing N N 387 TYR N H2 sing N N 388 TYR CA C sing N N 389 TYR CA CB sing N N 390 TYR CA HA sing N N 391 TYR C O doub N N 392 TYR C OXT sing N N 393 TYR CB CG sing N N 394 TYR CB HB2 sing N N 395 TYR CB HB3 sing N N 396 TYR CG CD1 doub Y N 397 TYR CG CD2 sing Y N 398 TYR CD1 CE1 sing Y N 399 TYR CD1 HD1 sing N N 400 TYR CD2 CE2 doub Y N 401 TYR CD2 HD2 sing N N 402 TYR CE1 CZ doub Y N 403 TYR CE1 HE1 sing N N 404 TYR CE2 CZ sing Y N 405 TYR CE2 HE2 sing N N 406 TYR CZ OH sing N N 407 TYR OH HH sing N N 408 TYR OXT HXT sing N N 409 VAL N CA sing N N 410 VAL N H sing N N 411 VAL N H2 sing N N 412 VAL CA C sing N N 413 VAL CA CB sing N N 414 VAL CA HA sing N N 415 VAL C O doub N N 416 VAL C OXT sing N N 417 VAL CB CG1 sing N N 418 VAL CB CG2 sing N N 419 VAL CB HB sing N N 420 VAL CG1 HG11 sing N N 421 VAL CG1 HG12 sing N N 422 VAL CG1 HG13 sing N N 423 VAL CG2 HG21 sing N N 424 VAL CG2 HG22 sing N N 425 VAL CG2 HG23 sing N N 426 VAL OXT HXT sing N N 427 # _em_admin.current_status REL _em_admin.deposition_date 2025-09-18 _em_admin.deposition_site RCSB _em_admin.entry_id 9YC5 _em_admin.last_update 2026-02-04 _em_admin.map_release_date 2026-02-04 _em_admin.title 'Human uPAR bound to the Fab fragment of targeted cancer therapeutic antibody FL1' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM C4H11NO3 1 'Tris(hydroxymethyl)aminomethane' 1 150 mM NaCl 2 'Sodium chloride' 1 2.5 % C3H8O3 3 Glycerol 1 1 mM C10H16N2O8 4 EDTA # _em_ctf_correction.details 'CTF corrections were performed after 3D reconstruction to improve the final resolution' _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 7227 _em_entity_assembly_recombinant.organism 'Drosophila melanogaster' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details 'Following motion correction, 4345 images were selected for particle picking' _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 4.92 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 10.7 _em_image_recording.details 'Images were collected at a pixel size of 0.8234' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 7181 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate 'VOLTA PHASE PLATE' _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ;The 7426690 particles were picked by automated particle picking using blob picker. Several rounds of 2D classification were performed to discard particles of low quality, producing 184642 particles of good quality which were used for 3D reconstruction. ; _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 7426690 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.5.3 ? 'IMAGE ACQUISITION' 'Images were automatically collected using EPU software' 2 ? ? 1 EPU 3.9 ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4.5.3 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ISOLDE 1.10.1 ? OTHER ? 8 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC 4.5.3 ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4.5.3 ? CLASSIFICATION ? 11 1 ? ? cryoSPARC 4.5.3 ? RECONSTRUCTION ? 12 1 ? ? cryoSPARC 4.5.3 ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.21.2_5419: ? # _em_specimen.concentration 3.5 _em_specimen.details ;Full-length human uPAR, and full-length antibody FL1 (IgG) were mixed in 2:1 molar ratio to form the protein complex which was used for EM sample. ; _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Other private' Denmark ? 1 'Other government' Denmark 'R231-A13832 and R352-A20542' 2 'Australian Research Council (ARC)' Australia FL180100019 3 'National Health and Medical Research Council (NHMRC, Australia)' Australia APP2000728 4 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code AF-Q03405-F1-v4 # _atom_sites.entry_id 9YC5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #